Salmon Ontology
type: Ontology
version IRI: http://purl.dataone.org/odo/SALMON/0.3.1
imports: oboe-core.owl
imports: astronomical-body-part-hierarchy.owl
imports: geosparql
date: 2021-04-12T11:02:10-07:00
description: An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms.
creator: https://orcid.org/0000-0002-5300-3075 https://orcid.org/0000-0002-0381-3766 https://orcid.org/0000-0003-0632-7576 https://orcid.org/0000-0003-0077-4738
license: https://creativecommons.org/publicdomain/zero/1.0/
git repository: https://github.com/DataONEorg/sem-prov-ontologies
bug-database: https://github.com/DataONEorg/sem-prov-ontologies/issues
default-namespace: SALMON
comment: Draft ontology to support Semantic Annotation of SASAP and salmon-related datasets housed in the SASAP Data Portal (https://knb.ecoinformatics.org/portals/SASAP/About). April 7, 2022 UPDATE (Mark Schildhauer; schild@nceas.ucsb.edu) This version of the salmon ontology preserves all terms and their original URI identifiers ("GUIDS") used to semantically annotate datasets in the SASAP data archives as of April 7, 2022, while also containing a number of additional terms that are not yet used. There are a number of "provisional" terms that have been added throughout the Ontology, i.e. as Classes, Individuals, Object, Datatype and Annotation Properties-- some are stubs for further axiomatization, other patterns are experimental and need to be cleaned up or revised as work progresses. In addition, a number of relationships have been created-- using Object Properties, Existential and Universal Quantifier Axioms, and "Annotation Properties as Flags"-- are in this Ontology due to experimentation with various approaches to inferencing. These are especially apparent in the treatment of Taxonomic and Vernacular names of Pacific Salmon. These should also be considered provisional and experimental. None of these issues should impact proper interpretation of annotated items in our SASAP archive Developed with Protege 5.5.0 Inferences using Pellet ============== creator: Samantha Csik, scsik@nceas.ucsb.edu created: 2021-04-12 updated: 2021-06-14 2021-07-20 mps (schild@nceas.ucsb.edu) 2021-08-05 mps (schild@nceas.ucsb.edu) 2021-08-09 mps (schild@nceas.ucsb.edu) 2021-08-11 mps (schild@nceas.ucsb.edu) 2021-08-13 mps (schild@nceas.ucsb.edu) merged in missing Classes from Sam's earlier version 2021-09-08 mps (schild@nceas.ucsb.edu) corrected all ID's to be 8 chars long 2021-10-04 mps with import of ENVO "ecology" subset 2021-10-13 mps added fisheries types; test modeling of different representation of taxonomies-- scoped domains/ranges? 2021-11-15 mps fixed "Age class Y" recruits to "Age…
version info: 0.3.1

hasNativeWaterbody
type: ObjectProperty
range: Water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T21:41:26Z

hasMigratoryPattern
type: ObjectProperty
inverse of: migratoryPatternOf
range: Migratory pattern
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:26:57Z

hasReproductiveStrategy
type: ObjectProperty
sub property of: topObjectProperty
inverse of: reproductiveStrategyOf
range: Reproductive strategy
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:27:15Z

reproductiveStrategyOf
type: ObjectProperty
domain: Reproductive strategy
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:30:32Z

migratoryPatternOf
type: ObjectProperty
domain: Migratory pattern
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:31:46Z

contains occurrence data about
type: ObjectProperty
sub property of: topObjectProperty
range: Organism name or identifier
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-08-12T01:42:16Z
comment: Object property to enable linking an information-bearing object such as a dataset, to its assertion of some organismal occurrence (sensu Darwin Core)

has vernacular name
type: ObjectProperty
equivalent property: vernacularName

has scientific name
type: ObjectProperty
equivalent property: scientificName

nameAccordingTo
type: ObjectProperty
range: Author citation
comment: As of 30April2021, Darwin Core (DWC) does not specify domains and ranges. Currently, I am considering 'Salmon specimen and occurrence' to be the domain and 'Author citation' to be the range.
definition: The reference to the source in which the specific taxon concept circumscription is defined or implied - traditionally signified by the Latin "sensu" or "sec." (from secundum, meaning "according to"). For taxa that result from identifications, a reference to the keys, monographs, experts and other sources should be given.

scientificName
type: ObjectProperty
domain: Salmonid Type
range: Taxon concept
comment: As of 30April2021, Darwin Core (DWC) does not specify domains and ranges. Currently, I am considering 'Vernacular name' to be the domain and 'Salmon specimen and occurrence' to be the range.
definition: The full scientific name, with authorship and date information if known. When forming part of an Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the IdentificationQualifier term.

hasBeginning
type: ObjectProperty
definition: Beginning of a temporal entity.

hasEnd
type: ObjectProperty
definition: End of a temporal entity.

hasTemporalDuration
type: ObjectProperty
definition: Duration of a temporal entity.

hasADF&GCode
type: DatatypeProperty
domain: Class
  union of: Pacific trout and char
  union of: Pacific salmon
range: integer
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T18:00:35Z
description: Alaska Department of Fish and Game (ADF&G) uses a list of numeric codes to describe (a) commercially-harvested aquatic species, (b) gear used for harvest, (c) method of catch processing, and (d) delivery form and product type.

Axiom
annotated source: hasADF&GCode
annotated property: description
annotated target: Alaska Department of Fish and Game (ADF&G) uses a list of numeric codes to describe (a) commercially-harvested aquatic species, (b) gear used for harvest, (c) method of catch processing, and (d) delivery form and product type.
source: coar fish codes.pdf

MeasurementType
type: Class
definition: A MeasurementType describes the type of a Measurement in which the Measurement would follow the associated Protocol to record the value of the associated Characteristic of the associated Entity using the associated Standard. Any of these associated properties may be omitted, in which case the MeasurementType is only constrained by the provided associations. A MeasurementType is a hypothetical construct, in that it is not associated with a particular instance of a Measurement.

temporal_MeasurementType
type: Class
subclass of: MeasurementType
hidden label: temporal_MeasurementType
preferred label: Temporal Measurement Type

Time Step
type: Class
subclass of: temporal_MeasurementType
IAO_0000115: Interval of time representing duration of observation
IAO_0000119: Adapted from http://en.wikipedia.org/wiki/Time
creator: http://orcid.org/0000-0002-5896-7295
has exact synonym: duration
has exact synonym: time interval
alternative label: duration
alternative label: time interval
hidden label: Time Step

estuary name
type: Class
subclass of: study location name
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-05-20T21:33:57Z

data quality assessment measurement type
type: Class
subclass of: MeasurementType
creator: http://orcid.org/0000-0003-1264-1166
date: 2018-11-30T05:06:00Z

data quality flag
type: Class
subclass of: data quality assessment measurement type
creator: http://orcid.org/0000-0003-1264-1166
date: 2018-11-30T05:06:08Z

time of measurement
type: Class
subclass of: date and time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T20:43:43Z

date and time of measurement
type: Class
subclass of: temporal_MeasurementType
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T21:16:02Z

measurement start time
type: Class
subclass of: time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T21:55:20Z

measurement end time
type: Class
subclass of: time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T21:55:34Z

month of year
type: Class
subclass of: date and time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T22:26:35Z

hour of measurement time
type: Class
subclass of: time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T22:40:52Z
has exact synonym: hour of day
alternative label: hour of day

year of measurement
type: Class
subclass of: date and time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T23:23:43Z

date
type: Class
subclass of: date and time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-14T23:28:39Z

part of season measurement made
type: Class
subclass of: temporal_MeasurementType
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-15T00:16:39Z

seconds elapsed
type: Class
subclass of: elapsed time
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-15T01:05:09Z

day of year
type: Class
subclass of: date and time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-15T18:26:54Z
has exact synonym: Julian day
alternative label: Julian day

fractional day of year
type: Class
subclass of: day of year
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-15T18:52:39Z
has exact synonym: Julian day fractional
alternative label: Julian day fractional

hour and minute of measurement time
type: Class
subclass of: time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T00:19:09Z

hours elapsed
type: Class
subclass of: elapsed time
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T00:23:41Z

elapsed time
type: Class
subclass of: Time Step
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T00:27:36Z

minute of measurement time
type: Class
subclass of: time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T00:29:17Z
has exact synonym: minute of hour
alternative label: minute of hour

second of measurement time
type: Class
subclass of: time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T00:29:24Z
has exact synonym: second of hour
alternative label: second of hour

year and day of measurement
type: Class
subclass of: date and time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T00:44:09Z

geographic position measurement type
type: Class
subclass of: MeasurementType
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-17T18:54:57Z

day of month
type: Class
subclass of: date and time of measurement
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T21:15:01Z

days elapsed
type: Class
subclass of: elapsed time
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-16T21:22:28Z

latitude coordinate
type: Class
subclass of: latitude and longitude coordinates
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-17T18:57:21Z
description: In geography, latitude is a geographic coordinate that specifies the north–south position of a point on the Earth's surface. Latitude is an angle (defined below) which ranges from 0° at the Equator to 90° (North or South) at the poles. Lines of constant latitude, or parallels, run east–west as circles parallel to the equator. Latitude is used together with longitude to specify the precise location of features on the surface of the Earth. On its own, the term latitude should be taken to be the geodetic latitude as defined below. Briefly, geodetic latitude at a point is the angle formed by the vector perpendicular (or normal) to the ellipsoidal surface from that point, and the equatorial plane. Also defined are six auxiliary latitudes that are used in special applications.

Axiom
annotated source: latitude coordinate
annotated property: description
annotated target: In geography, latitude is a geographic coordinate that specifies the north–south position of a point on the Earth's surface. Latitude is an angle (defined below) which ranges from 0° at the Equator to 90° (North or South) at the poles. Lines of constant latitude, or parallels, run east–west as circles parallel to the equator. Latitude is used together with longitude to specify the precise location of features on the surface of the Earth. On its own, the term latitude should be taken to be the geodetic latitude as defined below. Briefly, geodetic latitude at a point is the angle formed by the vector perpendicular (or normal) to the ellipsoidal surface from that point, and the equatorial plane. Also defined are six auxiliary latitudes that are used in special applications.
source: https://en.wikipedia.org/wiki/Latitude

longitude coordinate
type: Class
subclass of: latitude and longitude coordinates
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-17T18:58:37Z
description: Longitude (/ˈlɒndʒɪtjuːd/, AU and UK also /ˈlɒŋɡɪ-/)[1][2] is a geographic coordinate that specifies the east–west position of a point on the Earth's surface, or the surface of a celestial body. It is an angular measurement, usually expressed in degrees and denoted by the Greek letter lambda (λ). Meridians (lines running from pole to pole) connect points with the same longitude. The prime meridian, which passes near the Royal Observatory, Greenwich, England, is defined as 0° longitude by convention. Positive longitudes are east of the prime meridian, and negative ones are west.

Axiom
annotated source: longitude coordinate
annotated property: description
annotated target: Longitude (/ˈlɒndʒɪtjuːd/, AU and UK also /ˈlɒŋɡɪ-/)[1][2] is a geographic coordinate that specifies the east–west position of a point on the Earth's surface, or the surface of a celestial body. It is an angular measurement, usually expressed in degrees and denoted by the Greek letter lambda (λ). Meridians (lines running from pole to pole) connect points with the same longitude. The prime meridian, which passes near the Royal Observatory, Greenwich, England, is defined as 0° longitude by convention. Positive longitudes are east of the prime meridian, and negative ones are west.
source: https://en.wikipedia.org/wiki/Longitude

latitude minute component
type: Class
subclass of: latitude coordinate
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-17T19:36:39Z

longitude minute component
type: Class
subclass of: longitude coordinate
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-17T22:52:26Z

year and season
type: Class
subclass of: temporal_MeasurementType
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-22T22:55:13Z

minutes elapsed
type: Class
subclass of: elapsed time
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-05-04T00:30:14Z

longitude degree component
type: Class
subclass of: longitude coordinate
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-28T21:35:36Z

latitude second component
type: Class
subclass of: latitude coordinate
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-28T21:37:49Z

latitude degree component
type: Class
subclass of: latitude coordinate
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-28T21:57:42Z

longitude second component
type: Class
subclass of: longitude coordinate
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-28T21:59:23Z

latitude and longitude coordinates
type: Class
equivalent class: Geocoordinates
subclass of: geographic position measurement type
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-01-29T00:50:47Z

season
type: Class
subclass of: year and season
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-05-17T22:41:45Z

station name
type: Class
subclass of: Places and Locations
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-02-20T18:28:45Z

station identifier
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-02-20T18:41:50Z
comment: Identifier associated, in some context, with a "station", i.e. a location having some established facilities for doing scientific research

creek name
type: Class
subclass of: study location name
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-03-15T23:46:34Z

cruise name
type: Class
subclass of: study location name
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-03-15T23:48:23Z

observer confidence
type: Class
subclass of: data quality assessment measurement type
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-03-19T21:55:20Z

valley name
type: Class
subclass of: study location name
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-03-25T22:43:37Z

signal quality
type: Class
subclass of: data quality assessment measurement type
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-03-26T17:39:32Z

lake name
type: Class
subclass of: study location name
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-03-26T22:54:25Z

years elapsed
type: Class
subclass of: elapsed time
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-07-15T23:41:07Z

study location name
type: Class
subclass of: Places and Locations
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-04-24T00:15:35Z

river or stream name
type: Class
subclass of: study location name
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-04-25T22:17:53Z

milliseconds elapsed
type: Class
subclass of: seconds elapsed
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-05-07T21:18:21Z

site identifier
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0003-1264-1166
date: 2019-05-23T19:30:55Z
comment: Identifier associated, in some context" with a "Site"-- i.e. a location where some research data have been or are being collected

Place or location or region
type: Class
equivalent class: Class
  union of: Location
  union of: Place
  union of: Region
subclass of: Geospatial information
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-30T20:59:48Z
comment: Union of Place and Location to enable searching over both less and more precise named designations of Regions

Water body
type: Class
subclass of: Environmental feature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-30T20:59:53Z
description: The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.
alternative label: waterbody body of water aquatic feature
definition: An accumulation of water of varying size.

Axiom
annotated source: Water body
annotated property: description
annotated target: The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.
source: https://en.wikipedia.org/wiki/Body_of_water, accessed 2021-03-30

Axiom
annotated source: Water body
annotated property: definition
annotated target: An accumulation of water of varying size.
has db xref: https://en.wikipedia.org/wiki/Body_of_water, accessed 2021-03-30 https://www.wikidata.org/wiki/Q15324, accessed 2021-03-30

Pacific trout and char
type: Class
subclass of: Salmonid Type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-30T21:00:02Z

Fish length measurement type
type: Class
subclass of: Fish measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T17:43:39Z
definition: A numerical value which represents the length of a fish, typically in units of millimeters, centimeters, or inches.

Axiom
annotated source: Fish length measurement type
annotated property: definition
annotated target: A numerical value which represents the length of a fish, typically in units of millimeters, centimeters, or inches.
has db xref: http://purl.dataone.org/odo/ECSO_00000553

Fork length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:19:34Z
alternative label: FL tip of snout to fork of tail
definition: A fish length measurement taken from the most anterior part of a fish to the tip of the median caudal fin rays (i.e. fork).

Axiom
annotated source: Fork length
annotated property: definition
annotated target: A fish length measurement taken from the most anterior part of a fish to the tip of the median caudal fin rays (i.e. fork).
source: https://www.monitoringresources.org/Document/Method/Details/4041, accessed 2021-03-31

Post-orbit to fork of tail length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:19:40Z
alternative label: POFK
definition: A fish length measurement taken from the hind margin of the orbit to the tip of the median caudal fin rays.

Axiom
annotated source: Post-orbit to fork of tail length
annotated property: altLabel
annotated target: POFK
comment: "POFK" is an acronym used by Alaska Department of Fish & Game (ADF&G)

Axiom
annotated source: Post-orbit to fork of tail length
annotated property: definition
annotated target: A fish length measurement taken from the hind margin of the orbit to the tip of the median caudal fin rays.
has db xref: https://www.monitoringresources.org/Document/Method/Details/1548, accessed 2021-03-31 https://www.monitoringresources.org/Document/Method/Details/4041, accessed 2021-03-31

Post orbit to hypural plate length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:19:49Z
alternative label: POHL
definition: A fish length measurement taken from the hind margin of the orbit to the hypural plate.

Axiom
annotated source: Post orbit to hypural plate length
annotated property: altLabel
annotated target: POHL
comment: "POHL" is an acronym used by Alaska Department of Fish & Game (ADF&G)

Axiom
annotated source: Post orbit to hypural plate length
annotated property: definition
annotated target: A fish length measurement taken from the hind margin of the orbit to the hypural plate.
source: https://www.monitoringresources.org/Document/Method/Details/1548, accessed 2021-03-31

Mid-orbit to hypural plate length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:19:56Z
alternative label: Mid-eye to hypural plate MEHL MEPS Mid-eye to posterior scale
definition: A fish length measurement taken from the middle of the orbit (i.e. eye) to the hypural plate.

Axiom
annotated source: Mid-orbit to hypural plate length
annotated property: altLabel
annotated target: Mid-eye to hypural plate MEHL MEPS Mid-eye to posterior scale
comment: "MEHL" is an acronym used by Alaska Department of Fish & Game (ADF&G)

Axiom
annotated source: Mid-orbit to hypural plate length
annotated property: definition
annotated target: A fish length measurement taken from the middle of the orbit (i.e. eye) to the hypural plate.
source: https://www.monitoringresources.org/Document/Method/Details/1549, accessed 2021-03-31

Mid-orbit to posterior insertion of anal fin length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:20:26Z
description: The insertion of a fin is the posterior-most point where the fin connects with the body.
alternative label: Mid-eye to posterior insertion of anal fin
definition: A fish length measurement taken from the mid-orbit (i.e. eye) to the posterior insertion of the anal fin.

Axiom
annotated source: Mid-orbit to posterior insertion of anal fin length
annotated property: description
annotated target: The insertion of a fin is the posterior-most point where the fin connects with the body.
source: https://www.seagrant.wisc.edu/our-work/focus-areas/fish-and-fisheries/fish-glossary/, accessed 2021-03-31

Axiom
annotated source: Mid-orbit to posterior insertion of anal fin length
annotated property: definition
annotated target: A fish length measurement taken from the mid-orbit (i.e. eye) to the posterior insertion of the anal fin.
has db xref: https://www.monitoringresources.org/Document/Method/Details/1549, accessed 2021-03-31

Mid-orbit to fork of tail length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:20:33Z
alternative label: MEFK Mid-eye to fork of tail
definition: A fish length measurement taken from the middle of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork).

Axiom
annotated source: Mid-orbit to fork of tail length
annotated property: altLabel
annotated target: MEFK Mid-eye to fork of tail
comment: "MEFK" is an acronym used by Alaska Department of Fish & Game (ADF&G)

Axiom
annotated source: Mid-orbit to fork of tail length
annotated property: definition
annotated target: A fish length measurement taken from the middle of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork).
has db xref: https://www.monitoringresources.org/Document/Method/Details/1549, accessed 2021-03-31 https://www.monitoringresources.org/Document/Method/Details/4041, accessed 2021-03-31

Total length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:21:18Z
alternative label: TL
definition: A fish length measurement of the entire length of a fish's body, taken from the most anterior part of the fish to the tip of the longest caudal fin rays.

Axiom
annotated source: Total length
annotated property: definition
annotated target: A fish length measurement of the entire length of a fish's body, taken from the most anterior part of the fish to the tip of the longest caudal fin rays.
source: https://www.monitoringresources.org/Document/Method/Details/1551, accessed 2021-03-31

Standard length
type: Class
subclass of: Fish length measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-03-31T18:21:24Z
alternative label: SL
definition: The measurement from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates).

Axiom
annotated source: Standard length
annotated property: definition
annotated target: The measurement from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates).
source: https://www.fishbase.in/glossary/Glossary.php?q=standard+length, accessed 2021-03-31

Fishery type
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T17:33:14Z
description: The Food and Agriculture Organization of the United Nations (FAO) defines a fishery as "...an activity leading to harvesting of fish. It may involve capture of wild fish or raising of fish through aquaculture."

Axiom
annotated source: Fishery type
annotated property: description
annotated target: The Food and Agriculture Organization of the United Nations (FAO) defines a fishery as "...an activity leading to harvesting of fish. It may involve capture of wild fish or raising of fish through aquaculture."
has db xref: https://en.wikipedia.org/wiki/Fishery, accessed 2021-04-01 https://www.wikidata.org/wiki/Q180538, accessed 2021-04-01 http://www.fao.org/faoterm/en/?defaultCollId=21, accessed 2021-04-01 Fletcher, W.J., Chesson, J. Fisher, M., Sainsbury K.J., Hundloe, T. Smith A.D.M., and B. Whitworth (2002): National ESD reporting framework for Australian fisheries: The "How To" guide for wild capture fisheries. FRDC Project 2000/145. Canberra, Australia

Fishing gear type
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:00:22Z
description: Equipment which is used to harvest aquatic resources, and in particular fish(es).
comment: [ADDRESS THIS COMMENT, THEN DELETE] Could use some input on subclass hierarchy. E.g. 'Hand collection' includes methods which are largely done with tools that can be operated by hand. 'Netting' includes things like gillnets and seines, which, while largely set from fishing vessels (particularly in commercial fisheries), can also be set by hand at smaller scales.

Axiom
annotated source: Fishing gear type
annotated property: description
annotated target: Equipment which is used to harvest aquatic resources, and in particular fish(es).
source: http://orcid.org/0000-0002-5300-3075

Angling
type: Class
subclass of: Hand collection
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:18Z
alternative label: hook and line
definition: Fishing by means of an "angle" (fish hook). The hook is usually attached to a fishing line and baited with natural bait or artificial lures to attract fish. The line is often attached to a fishing rod.
related match: http://vocab.nerc.ac.uk/collection/M13/current/014/

Axiom
annotated source: Angling
annotated property: definition
annotated target: Fishing by means of an "angle" (fish hook). The hook is usually attached to a fishing line and baited with natural bait or artificial lures to attract fish. The line is often attached to a fishing rod.
has db xref: https://en.wikipedia.org/wiki/Angling, accessed 2021-04-01

Fish wheel
type: Class
subclass of: Fishing gear type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:23Z
alternative label: salmon wheel
definition: A device which (a) is situated in rivers for catching fish, and (b) looks and operates like a watermill that is outfitted with wire baskets designed to catch and carry fish from the water and into a nearby holding tank.

Axiom
annotated source: Fish wheel
annotated property: definition
annotated target: A device which (a) is situated in rivers for catching fish, and (b) looks and operates like a watermill that is outfitted with wire baskets designed to catch and carry fish from the water and into a nearby holding tank.
has db xref: https://en.wikipedia.org/wiki/Fish_wheel, accessed 2021-04-01 https://www.wikidata.org/wiki/Q5454688, accessed 2021-04-01

Spear
type: Class
subclass of: Hand collection
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:30Z
definition: A barbed pole, which is used to strike and collect a fish. Spearheads come in a variety of different shapes (e.g. arrow, trident), and can be thrown by hand or deployed using elastic-powered spearguns and slings or compressed gas pneumatic powered spearguns.

Axiom
annotated source: Spear
annotated property: definition
annotated target: A barbed pole, which is used to strike and collect a fish. Spearheads come in a variety of different shapes (e.g. arrow, trident), and can be thrown by hand or deployed using elastic-powered spearguns and slings or compressed gas pneumatic powered spearguns.
has db xref: https://en.wikipedia.org/wiki/Spearfishing, accessed 2021-04-01 https://www.wikidata.org/wiki/Q765706, accessed 2021-04-01

Set gillnet
type: Class
subclass of: Gillnet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:36Z
alternative label: set net
definition: A gillnet which is attached to poles fixed in the substrate or an anchor system to prevent movement of the net.

Axiom
annotated source: Set gillnet
annotated property: definition
annotated target: A gillnet which is attached to poles fixed in the substrate or an anchor system to prevent movement of the net.
source: https://www.fisheries.noaa.gov/national/bycatch/fishing-gear-gillnets

Weir
type: Class
subclass of: Fishing gear type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:41Z
alternative label: fish weir fishing weir fishgarth kiddle
definition: An obstruction placed in tidal waters, or wholly or partially across a river, to direct the passage of, or trap fish.

Axiom
annotated source: Weir
annotated property: definition
annotated target: An obstruction placed in tidal waters, or wholly or partially across a river, to direct the passage of, or trap fish.
source: https://en.wikipedia.org/wiki/Fishing_weir, accessed 2021-04-01 https://www.wikidata.org/wiki/Q1417573, accessed 2021-04-01

Pot
type: Class
subclass of: Fishing gear type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:50Z
alternative label: trap
definition: A three-dimensional wire or wood device which is submerged and commonly baited. A pot (or "trap") permits organisms to enter the enclosure, but makes escape extremely difficult or impossible.

Axiom
annotated source: Pot
annotated property: definition
annotated target: A three-dimensional wire or wood device which is submerged and commonly baited. A pot (or "trap") permits organisms to enter the enclosure, but makes escape extremely difficult or impossible.
has db xref: https://www.fisheries.noaa.gov/national/bycatch/fishing-gear-traps-and-pots, accessed 2021-04-01

Beach seine
type: Class
subclass of: Seine
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:54Z
definition: A seine net operated from the shore. The gear is composed of a bunt (bag or lose netting) and long wings often lengthened with long ropes for towing the seine to the beach. The headrope with floats is on the surface, the footrope is in permanent contact with the bottom and the seine is therefore a barrier which prevent the fish from escaping from the area enclosed by the net

Axiom
annotated source: Beach seine
annotated property: definition
annotated target: A seine net operated from the shore. The gear is composed of a bunt (bag or lose netting) and long wings often lengthened with long ropes for towing the seine to the beach. The headrope with floats is on the surface, the footrope is in permanent contact with the bottom and the seine is therefore a barrier which prevent the fish from escaping from the area enclosed by the net
source: http://www.fao.org/fishery/geartype/202/en, accessed 01April2021

Dip net
type: Class
subclass of: Hand collection
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:01:59Z
alternative label: hand net scoop net
definition: A net or mesh basket held open by a hoop which may or may not be on the end of a handle and is used for scopping fish near the surface of the water.

Axiom
annotated source: Dip net
annotated property: definition
annotated target: A net or mesh basket held open by a hoop which may or may not be on the end of a handle and is used for scopping fish near the surface of the water.
has db xref: https://en.wikipedia.org/wiki/Hand_net, accessed 2021-04-01 https://www.wikidata.org/wiki/Q640082, accessed 2021-04-01

Handpicked or carcass collection
type: Class
subclass of: Hand collection
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:02:25Z
definition: The gathering live or deceased fishes by hand.

Axiom
annotated source: Handpicked or carcass collection
annotated property: definition
annotated target: The gathering live or deceased fishes by hand.
source: http://orcid.org/0000-0002-5300-3075

Troll
type: Class
subclass of: Fishing gear type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:02:30Z
definition: One or more fishing lines, which are baited with lures or bait fish and drawn through the water (often behind a moving vessel) to catch pelagic fishes.

Axiom
annotated source: Troll
annotated property: definition
annotated target: One or more fishing lines, which are baited with lures or bait fish and drawn through the water (often behind a moving vessel) to catch pelagic fishes.
has db xref: https://en.wikipedia.org/wiki/Trolling_(fishing), accessed 2021-04-01

Gig
type: Class
subclass of: Spear
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:02:33Z
definition: A multi-pronged spear, typically ranging in length from 8 to 14 feet, which is used to spear (or "gig") fishes for harvest.

Axiom
annotated source: Gig
annotated property: definition
annotated target: A multi-pronged spear, typically ranging in length from 8 to 14 feet, which is used to spear (or "gig") fishes for harvest.
has db xref: https://en.wikipedia.org/wiki/Gigging, accessed 2021-04-01 https://www.wikidata.org/wiki/Q4412590, accessed 2021-04-01

Drift gillnet
type: Class
subclass of: Gillnet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:02:38Z
definition: A gillnet which is kept afloat at the proper depth using a system of weights and buoys attached to the headrope, footrope, or floatline.

Axiom
annotated source: Drift gillnet
annotated property: definition
annotated target: A gillnet which is kept afloat at the proper depth using a system of weights and buoys attached to the headrope, footrope, or floatline.
source: https://www.fisheries.noaa.gov/national/bycatch/fishing-gear-gillnets

Purse seine
type: Class
subclass of: Seine
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:02:44Z
definition: A large wall of netting deployed around an entire area or school of fish. The seine has floats along the top line with a lead line threaded through rings along the bottom. Once a school of fish is located, a skiff encircles the school with the net. The lead line is then pulled in, "pursing" the net closed on the bottom, preventing fish from escaping by swimming downward. The catch is harvested by either hauling the net aboard or bringing it alongside the vessel.

Axiom
annotated source: Purse seine
annotated property: definition
annotated target: A large wall of netting deployed around an entire area or school of fish. The seine has floats along the top line with a lead line threaded through rings along the bottom. Once a school of fish is located, a skiff encircles the school with the net. The lead line is then pulled in, "pursing" the net closed on the bottom, preventing fish from escaping by swimming downward. The catch is harvested by either hauling the net aboard or bringing it alongside the vessel.
source: https://www.fisheries.noaa.gov/national/bycatch/fishing-gear-purse-seines, accessed 01April2021
has db xref: http://vocab.nerc.ac.uk/collection/M13/current/015/, accessed 01April2021

Electrofishing
type: Class
subclass of: Hand collection
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:02:48Z
definition: A type of fishing gear which uses direct current electricity flowing between a submerged cathod and anode to cause galvanotaxis, or an uncontrolled muscular convulsion, which affects the movement of the fish such that it swims towards the anode, where it is then collected.

Axiom
annotated source: Electrofishing
annotated property: definition
annotated target: A type of fishing gear which uses direct current electricity flowing between a submerged cathod and anode to cause galvanotaxis, or an uncontrolled muscular convulsion, which affects the movement of the fish such that it swims towards the anode, where it is then collected.
has db xref: https://en.wikipedia.org/wiki/Electrofishing, accessed 2021-04-01 https://www.wikidata.org/wiki/Q1249133, accessed 2021-04-01

Gillnet
type: Class
subclass of: Netting
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:31:54Z
definition: A wall of netting which hangs in the water column, typically made of monofilament or multifilament nylon. Mesh sizes are designed to allow fish to get only their head through the netting but not their body. The fish's gills then get caught in the mesh as the fish tries to back out of the net. As the fish struggles to free itself, it becomes more and more entangled.
related match: http://vocab.nerc.ac.uk/collection/M13/current/013/

Axiom
annotated source: Gillnet
annotated property: definition
annotated target: A wall of netting which hangs in the water column, typically made of monofilament or multifilament nylon. Mesh sizes are designed to allow fish to get only their head through the netting but not their body. The fish's gills then get caught in the mesh as the fish tries to back out of the net. As the fish struggles to free itself, it becomes more and more entangled.
has db xref: https://www.fisheries.noaa.gov/national/bycatch/fishing-gear-gillnets, accessed 01April2021

Seine
type: Class
subclass of: Netting
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:32:41Z
definition: A type of net which hangs vertically in the water with its bottom edge held down by weights and its top edge buoyed by floats. Seine nets can be deployed from the shore as a beach seine, or from a boat.

Axiom
annotated source: Seine
annotated property: definition
annotated target: A type of net which hangs vertically in the water with its bottom edge held down by weights and its top edge buoyed by floats. Seine nets can be deployed from the shore as a beach seine, or from a boat.
source: https://en.wikipedia.org/wiki/Seine_fishing, accessed 01April2021 https://www.wikidata.org/wiki/Q600580, accessed 01April2021

Netting
type: Class
subclass of: Fishing gear type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:46:07Z

Hand collection
type: Class
subclass of: Fishing gear type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T18:47:27Z
definition: Fishing gear which is used to collect fish and can be operated by hand by one or few people. Hand collection methods may also include the collection of fish without the aid of any gear (i.e. gathering live fish or carcasses using only one's hands).

Axiom
annotated source: Hand collection
annotated property: definition
annotated target: Fishing gear which is used to collect fish and can be operated by hand by one or few people. Hand collection methods may also include the collection of fish without the aid of any gear (i.e. gathering live fish or carcasses using only one's hands).
source: http://orcid.org/0000-0002-5300-3075

Fish measurement type
type: Class
subclass of: MeasurementType
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-01T21:37:39Z
definition: A measurement type taken of some physical, biological, or ecological aspect of a fish or fishes.

Axiom
annotated source: Fish measurement type
annotated property: definition
annotated target: A measurement type taken of some physical, biological, or ecological aspect of a fish or fishes.
source: http://orcid.org/0000-0002-5300-3075

Commercial fishery
type: Class
subclass of: Fishery type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-02T19:59:17Z
definition: A fishery in which fishes and other seafood are harvested for commercial profit, mostly from wild fisheries.

Axiom
annotated source: Commercial fishery
annotated property: definition
annotated target: A fishery in which fishes and other seafood are harvested for commercial profit, mostly from wild fisheries.
has db xref: https://en.wikipedia.org/wiki/Commercial_fishing, accessed 2021-04-02 https://www.wikidata.org/wiki/Q11202642, accessed 2021-04-02

Recreational (sport) fishery
type: Class
subclass of: Fishery type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-02T20:00:25Z
alternative label: sport fishery
definition: A fishery in which fishes and other seafood are harvested for pleasure or competition.

Axiom
annotated source: Recreational (sport) fishery
annotated property: definition
annotated target: A fishery in which fishes and other seafood are harvested for pleasure or competition.
has db xref: https://en.wikipedia.org/wiki/Recreational_fishing, accessed 2021-04-02 https://www.wikidata.org/wiki/Q283534, accessed 2021-04-02

Subsistence fishery
type: Class
subclass of: Fishery type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-02T20:00:36Z
description: In Alaska, subsistence fisheries may not operate in "nonsubsistence areas" as designated by the state (AS 16.05.258(c)).
alternative label: artisinal fishery traditional fishery
definition: A fishery in which fishes or other seafood are harvested for noncommercial, customary and traditional uses. These uses include direct personal or family consumption as food, shelter, fuel, clothing, tools, or transportation, for the making and selling of handicraft articles out of nonedible by-products of fish and wildlife resources taken for personal or family consumption, and for the customary trade, barter, or sharing for personal or family consumption.

Axiom
annotated source: Subsistence fishery
annotated property: description
annotated target: In Alaska, subsistence fisheries may not operate in "nonsubsistence areas" as designated by the state (AS 16.05.258(c)).
source: http://www.touchngo.com/lglcntr/akstats/statutes/title16/chapter05/section258.htm, accessed 2021-04-27

Axiom
annotated source: Subsistence fishery
annotated property: definition
annotated target: A fishery in which fishes or other seafood are harvested for noncommercial, customary and traditional uses. These uses include direct personal or family consumption as food, shelter, fuel, clothing, tools, or transportation, for the making and selling of handicraft articles out of nonedible by-products of fish and wildlife resources taken for personal or family consumption, and for the customary trade, barter, or sharing for personal or family consumption.
has db xref: https://www.adfg.alaska.gov/index.cfm?adfg=fishingsubsistence.main, accessed 2021-04-02

Hatchery
type: Class
subclass of: Fish stock type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-02T20:00:45Z
description: The Alaska hatchery program was designed to increase salmon abundance and enhace fisheries, while protecting wild stocks. The program was built in response to depressed commercial fisheries, to meet the needs of the people of the state.
comment: Oftentimes, hatchery-reared salmon will have their adipose fins removed (i.e. clipped) to mark that they come from a hatchery (versus a wild stock).
definition: The artificial breeding, hatching, and rearing through the early life stages of animals -- finfish and shellfish in particular. Hatcheries produce larval and juvenile fish, shellfish, and crustaceans, primarily to support the aquaculture industry where they are transferred to on-growing systems, such as fish farms, to reach harvest size.

Axiom
annotated source: Hatchery
annotated property: description
annotated target: The Alaska hatchery program was designed to increase salmon abundance and enhace fisheries, while protecting wild stocks. The program was built in response to depressed commercial fisheries, to meet the needs of the people of the state.
source: https://www.adfg.alaska.gov/static/fishing/PDFs/hatcheries/2013_ak_hatcheries.pdf, accessed 2021-04-02
has db xref: https://www.adfg.alaska.gov/index.cfm?adfg=fishingHatcheries.main, accessed 2021-04-02

Axiom
annotated source: Hatchery
annotated property: comment
annotated target: Oftentimes, hatchery-reared salmon will have their adipose fins removed (i.e. clipped) to mark that they come from a hatchery (versus a wild stock).
has db xref: https://www.adfg.alaska.gov/index.cfm?adfg=wildlifenews.view_article&articles_id=693, accessed 2021-06-15

Axiom
annotated source: Hatchery
annotated property: definition
annotated target: The artificial breeding, hatching, and rearing through the early life stages of animals -- finfish and shellfish in particular. Hatcheries produce larval and juvenile fish, shellfish, and crustaceans, primarily to support the aquaculture industry where they are transferred to on-growing systems, such as fish farms, to reach harvest size.
source: https://en.wikipedia.org/wiki/Fish_hatchery, accessed 2021-04-02 https://www.wikidata.org/wiki/Q15615109, accessed 2021-04-02

Personal use fishery
type: Class
subclass of: Small-scale fishery
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-02T22:17:54Z
description: Personal use fishing is open to Alaskan residents only, and you must have a valid resident Sport Fishing License to participate in personal use fisheries. The bag, possession, and gear limits in personal use fisheries MAY NOT be added to the bag, possession, and gear limits under sport or subsistence regulations. It is unlawful to buy, sell, trade or barter personal use finfish, shellfish, aquatic plants, or their parts. Many, but not all, personal use fisheries require a permit issued by the Department of Fish and Game. Personal use fisheries have many different regulations for bag limits, allowable gear, and time and area restrictions. Some personal use fisheries are managed in-season by emergency order, so regulations can change at any time.
definition: A regulatory category of Alaskan fishery which is legally defined as, "the taking, fishing for, or possession of finfish, shellfish, or other fishery resources, by Alaska residents for personal use and not for sale or barter, with gill or dip net, seine, fish wheel, long line, or other means defined by the Board of Fisheries." Personal use fisheries may exist only in "nonsubsistence areas" as determined by the state of Alaska (AS 16.05.258(c)).
related match: Subsistence fishery

Axiom
annotated source: Personal use fishery
annotated property: description
annotated target: Personal use fishing is open to Alaskan residents only, and you must have a valid resident Sport Fishing License to participate in personal use fisheries. The bag, possession, and gear limits in personal use fisheries MAY NOT be added to the bag, possession, and gear limits under sport or subsistence regulations. It is unlawful to buy, sell, trade or barter personal use finfish, shellfish, aquatic plants, or their parts. Many, but not all, personal use fisheries require a permit issued by the Department of Fish and Game. Personal use fisheries have many different regulations for bag limits, allowable gear, and time and area restrictions. Some personal use fisheries are managed in-season by emergency order, so regulations can change at any time.
source: http://www.adfg.alaska.gov/index.cfm?adfg=fishingPersonalUse.main, accessed 2021-04-02

Axiom
annotated source: Personal use fishery
annotated property: definition
annotated target: A regulatory category of Alaskan fishery which is legally defined as, "the taking, fishing for, or possession of finfish, shellfish, or other fishery resources, by Alaska residents for personal use and not for sale or barter, with gill or dip net, seine, fish wheel, long line, or other means defined by the Board of Fisheries." Personal use fisheries may exist only in "nonsubsistence areas" as determined by the state of Alaska (AS 16.05.258(c)).
has db xref: http://www.adfg.alaska.gov/index.cfm?adfg=fishingPersonalUse.main, accessed 2021-04-02
has db xref: https://alaskasalmonandpeople.org/working-group/governance-and-subsistence/, accessed 2021-04-02

Aquaculture
type: Class
subclass of: Fish stock type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-02T22:18:14Z
description: In Alaska, the aquaculture industry primarily produces Pacific oysters, littleneck clams, and mussels for commercial food production.
alternative label: Aquatic farming Aquafarming
definition: The culturing of fish, shellfish, aquatic plants, and/or other organisms in captivity or under controlled conditions in the near shore environment.

Axiom
annotated source: Aquaculture
annotated property: description
annotated target: In Alaska, the aquaculture industry primarily produces Pacific oysters, littleneck clams, and mussels for commercial food production.
source: https://www.adfg.alaska.gov/index.cfm?adfg=fishingaquaticfarming.programinfo, accessed 2021-04-02

Axiom
annotated source: Aquaculture
annotated property: definition
annotated target: The culturing of fish, shellfish, aquatic plants, and/or other organisms in captivity or under controlled conditions in the near shore environment.
source: https://en.wikipedia.org/wiki/Aquaculture, accessed 2021-04-02 https://www.wikidata.org/wiki/Q188989, accessed 2021-04-02
has db xref: http://vocab.nerc.ac.uk/collection/M13/current/018/, accessed 2021-04-02

Fish measurement method
type: Class
subclass of: Measurement method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-05T21:55:12Z
definition: The manner, procedure or technique by which a morphological or physiological state or property in a single fish or sample or a group of fish(es) or samples is assessed and a quantitative or qualitative value assigned.

Axiom
annotated source: Fish measurement method
annotated property: definition
annotated target: The manner, procedure or technique by which a morphological or physiological state or property in a single fish or sample or a group of fish(es) or samples is assessed and a quantitative or qualitative value assigned.
has db xref: http://purl.obolibrary.org/obo/MMO_0000000

Fish age measurement type
type: Class
subclass of: Fish measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-06T22:46:36Z
definition: The duration of time for which a fish has been alive.

Axiom
annotated source: Fish age measurement type
annotated property: closeMatch
annotated target: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25150
comment: This URI does not appear to dereference to the term. Including this URL, https://bioportal.bioontology.org/ontologies/NCIT?p=classes&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C25150, to ensure findability.

Axiom
annotated source: Fish age measurement type
annotated property: definition
annotated target: The duration of time for which a fish has been alive.
has db xref: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25150

Fish age determination method
type: Class
subclass of: Fish measurement method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-06T22:49:05Z
description: There are three basic methods for age and growth determination of fishes: (1) observation of the growth of fishes of known age, (2) study of fish size-frequencies, and (3) study of seasonal ring formation in hard body parts such as scales and bones.
definition: The way in which age is determined for a given individual.

Axiom
annotated source: Fish age determination method
annotated property: description
annotated target: There are three basic methods for age and growth determination of fishes: (1) observation of the growth of fishes of known age, (2) study of fish size-frequencies, and (3) study of seasonal ring formation in hard body parts such as scales and bones.
source: https://spo.nmfs.noaa.gov/sites/default/files/legacy-pdfs/leaflet488.pdf, accessed 2021-04-06

Fish sex determination method
type: Class
subclass of: Fish measurement method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-06T22:50:14Z
definition: The way in which sex is determined for a given individual.

Total age
type: Class
subclass of: Numeric age of fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-06T22:51:22Z
definition: The sum of freshwater and marine annuli plus one to account for time spent in the gravel before hatching.

Axiom
annotated source: Total age
annotated property: definition
annotated target: The sum of freshwater and marine annuli plus one to account for time spent in the gravel before hatching.
has db xref: http://courses.washington.edu/fish450/Lecture%20PDFs/Salmon_age_and_size_at_maturity.pdf, accessed 2021-04-06

Freshwater age
type: Class
subclass of: Numeric age of fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-06T23:10:05Z
definition: The number of years or winters a salmon spends in a freshwater environment as a free-swimming fish.

Axiom
annotated source: Freshwater age
annotated property: definition
annotated target: The number of years or winters a salmon spends in a freshwater environment as a free-swimming fish.
has db xref: https://www.researchgate.net/profile/Darlene-Gillespie/publication/281285926_Chinook_Salmon_Oncorhynchus_tshawytscha_Scale_Age_Determination_Procedures/links/55df66d708aede0b572b8de7/Chinook-Salmon-Oncorhynchus-tshawytscha-Scale-Age-Determination-Procedures.pdf, accessed 2021-04-06

Saltwater age
type: Class
subclass of: Numeric age of fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-06T23:14:20Z
definition: The number of years or winters a salmon spends in a saltwater environment.

Axiom
annotated source: Saltwater age
annotated property: definition
annotated target: The number of years or winters a salmon spends in a saltwater environment.
has db xref: https://www.researchgate.net/profile/Darlene-Gillespie/publication/281285926_Chinook_Salmon_Oncorhynchus_tshawytscha_Scale_Age_Determination_Procedures/links/55df66d708aede0b572b8de7/Chinook-Salmon-Oncorhynchus-tshawytscha-Scale-Age-Determination-Procedures.pdf, accessed 2021-04-06

River
type: Class
subclass of: Stream
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:39:18Z
definition: A stream which, through permanent or seasonal flow processes, moves from elevated land towards lower elevations through a definite channel and empties either into a sea, lake, or another river or ends on land as bed seepage and evapotranspiration exceed water supply.

Axiom
annotated source: River
annotated property: definition
annotated target: A stream which, through permanent or seasonal flow processes, moves from elevated land towards lower elevations through a definite channel and empties either into a sea, lake, or another river or ends on land as bed seepage and evapotranspiration exceed water supply.
source: http://purl.obolibrary.org/obo/ENVO_00000022
has db xref: https://en.wikipedia.org/wiki/River, accessed 2021-04-07 https://www.wikidata.org/wiki/Q4022, accessed 2021-04-07

Lake
type: Class
subclass of: Lentic water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:39:22Z
definition: A body of water or other liquid of considerable size contained in a depression on a landmass.

Axiom
annotated source: Lake
annotated property: definition
annotated target: A body of water or other liquid of considerable size contained in a depression on a landmass.
source: http://purl.obolibrary.org/obo/ENVO_00000020

Ocean
type: Class
subclass of: Marine water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:39:26Z
definition: A marine water body which is constitutes the majority of an astronomical body's hydrosphere.

Axiom
annotated source: Ocean
annotated property: definition
annotated target: A marine water body which is constitutes the majority of an astronomical body's hydrosphere.
source: http://purl.obolibrary.org/obo/ENVO_00000015

Stream
type: Class
subclass of: Watercourse
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:40:11Z
definition: A watercourse which is linear and flows across the solid portion of a planetary surface.

Axiom
annotated source: Stream
annotated property: definition
annotated target: A watercourse which is linear and flows across the solid portion of a planetary surface.
source: http://purl.obolibrary.org/obo/ENVO_00000023
has db xref: https://en.wikipedia.org/wiki/Stream, accessed 2021-04-07 https://www.wikidata.org/wiki/Q47521, accessed 2021-04-07

Tributary
type: Class
subclass of: Stream
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:40:15Z
alternative label: affluent
definition: A stream or river which flows into another river (a parent river) or body of water but which may not flow directly into the sea.

Axiom
annotated source: Tributary
annotated property: definition
annotated target: A stream or river which flows into another river (a parent river) or body of water but which may not flow directly into the sea.
source: http://purl.obolibrary.org/obo/ENVO_00000495
has db xref: https://en.wikipedia.org/wiki/Tributary, accessed 2021-04-07 https://www.wikidata.org/wiki/Q159675, accessed 2021-04-07

Lotic water body
type: Class
subclass of: Water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:44:17Z
definition: A water body in which the accumulated water, in its totality, is flowing.

Axiom
annotated source: Lotic water body
annotated property: definition
annotated target: A water body in which the accumulated water, in its totality, is flowing.
source: http://purl.obolibrary.org/obo/ENVO_01000618

Lentic water body
type: Class
subclass of: Water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:47:13Z
definition: A water body in which the accumulated water, in its totality, has very little to no directed flow.

Axiom
annotated source: Lentic water body
annotated property: definition
annotated target: A water body in which the accumulated water, in its totality, has very little to no directed flow.
source: http://purl.obolibrary.org/obo/ENVO_01000617

Pond
type: Class
subclass of: Lentic water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-07T18:47:40Z
definition: A body of water, usually of smaller size than a lake.

Axiom
annotated source: Pond
annotated property: definition
annotated target: A body of water, usually of smaller size than a lake.
source: http://purl.obolibrary.org/obo/ENVO_00000033

Fish age (European notation)
type: Class
subclass of: Fish age notation type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-09T18:49:30Z
description: e.g. An age written in European notation as '1.3' is interpreted as 1 year over-wintered in freshwater and 3 years in the ocean. The total age is 4 years (1 + 3 years). The Gilbert-Rich equivalent age is written as '5sub2'.
comment: The European Age System Designation is based on a count of Freshwater (FW) and Saltwater (SW) Annuli in recruit otoliths, represented as "number of FW annuli" "." "number of SW annuli", e.g "1.4" indicating 1 FW annulus and 4 SW annuli. Some interpret the "Total Age" of a recruit with an "Age designation= 0.0" as a 1-year old salmon, while others interpret "Total Age" as a 0-year old salmon. That is, in some cases "Total Age" might be reported FW+SW+1, while in other cases it would simply be FW+SW: 1.3=total age of 4, or 5 years 2.3=total age of 5, or 6 years
definition: An age designation notation that includes two number separated by a period. The first number represents the number of years or winters a salmon has spent in freshwater after emergence from the gravel, and the second number represents the number of years spent in the ocean. Added together, these numbers can provide the total age or age class of a salmon. (although see Comment for further detail).

Axiom
annotated source: Fish age (European notation)
annotated property: description
annotated target: e.g. An age written in European notation as '1.3' is interpreted as 1 year over-wintered in freshwater and 3 years in the ocean. The total age is 4 years (1 + 3 years). The Gilbert-Rich equivalent age is written as '5sub2'.
source: https://www.researchgate.net/profile/Darlene-Gillespie/publication/281285926_Chinook_Salmon_Oncorhynchus_tshawytscha_Scale_Age_Determination_Procedures/links/55df66d708aede0b572b8de7/Chinook-Salmon-Oncorhynchus-tshawytscha-Scale-Age-Determination-Procedures.pdf, accessed 20212-04-09

Axiom
annotated source: Fish age (European notation)
annotated property: definition
annotated target: An age designation notation that includes two number separated by a period. The first number represents the number of years or winters a salmon has spent in freshwater after emergence from the gravel, and the second number represents the number of years spent in the ocean. Added together, these numbers can provide the total age or age class of a salmon. (although see Comment for further detail).
source: https://www.researchgate.net/profile/Darlene-Gillespie/publication/281285926_Chinook_Salmon_Oncorhynchus_tshawytscha_Scale_Age_Determination_Procedures/links/55df66d708aede0b572b8de7/Chinook-Salmon-Oncorhynchus-tshawytscha-Scale-Age-Determination-Procedures.pdf, accessed 20212-04-09

Fish age (Gilbert-Rich notation)
type: Class
subclass of: Fish age notation type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-09T18:52:00Z
description: e.g. An age written in Gilbert-Rich notation as '5sub2' (spoken as "five sub two") is interpreted as a fish that is in its fifth year of life (i.e. a fish that will be 5 on its next "birthday" or the number of winters from its deposition in the gravel as an egg to the time of sampling) and which migrated to the ocean during its second year of life. The European notation equivalent age is written as '1.3'.
alternative label: G-R notation G-R
definition: An age designation notation that includes two numbers, of which the second is a subscript. The first numeral indicates the total age of the fish and the subscript indicates the time spent in freshwater prior to saltwater immigration.

Axiom
annotated source: Fish age (Gilbert-Rich notation)
annotated property: description
annotated target: e.g. An age written in Gilbert-Rich notation as '5sub2' (spoken as "five sub two") is interpreted as a fish that is in its fifth year of life (i.e. a fish that will be 5 on its next "birthday" or the number of winters from its deposition in the gravel as an egg to the time of sampling) and which migrated to the ocean during its second year of life. The European notation equivalent age is written as '1.3'.
has db xref: https://www.researchgate.net/profile/Darlene-Gillespie/publication/281285926_Chinook_Salmon_Oncorhynchus_tshawytscha_Scale_Age_Determination_Procedures/links/55df66d708aede0b572b8de7/Chinook-Salmon-Oncorhynchus-tshawytscha-Scale-Age-Determination-Procedures.pdf, accessed 20212-04-09 https://www.pac.dfo-mpo.gc.ca/fm-gp/fraser/docs/abor-autoc/2010FrasRvrChkInformDoc.htm, accessed 20212-04-09

Axiom
annotated source: Fish age (Gilbert-Rich notation)
annotated property: definition
annotated target: An age designation notation that includes two numbers, of which the second is a subscript. The first numeral indicates the total age of the fish and the subscript indicates the time spent in freshwater prior to saltwater immigration.
source: https://www.researchgate.net/profile/Darlene-Gillespie/publication/281285926_Chinook_Salmon_Oncorhynchus_tshawytscha_Scale_Age_Determination_Procedures/links/55df66d708aede0b572b8de7/Chinook-Salmon-Oncorhynchus-tshawytscha-Scale-Age-Determination-Procedures.pdf, accessed 20212-04-09 https://pdxscholar.library.pdx.edu/cgi/viewcontent.cgi?article=3220&context=open_access_etds, accessed 20212-04-09

Environmental feature
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-12T19:49:29Z
comment: This Class and all its Subclasses are taken from the Environment Ontology, ENVO-- where the Class "Environmental feature" is now deprecated. To address this issue, we have imported the "astronomical-body-parts--hierarchy.owl" file from the ENVO ontology framework into this Salmon ontology. That subset of ENVO includes all the relevant subclass terms included here, except for "Creek". We will put in a request to ENVO curators to add the term "Creek", probably as a subclass of "Stream". Aside from Creek, we would recommend using the Classes included under the ENVO "water body" Class hierarchy for annotation of Salmon data as to "features" of their habitat, because these are more comprehensive than the terms in this native "salmon ontology" subClass hierarchy. (Mark Schildhauer, 2021Jul20)
equivalent class: http://purl.obolibrary.org/obo/ENVO_00002297
definition: A material entity which determines an environmental system.

Axiom
annotated source: Environmental feature
annotated property: equivalentClass
annotated target: http://purl.obolibrary.org/obo/ENVO_00002297
comment: Note that this ENVO term, 'environmental feature' is deprecated

Axiom
annotated source: Environmental feature
annotated property: definition
annotated target: A material entity which determines an environmental system.
source: http://purl.obolibrary.org/obo/ENVO_00002297 [DEPRECATED]

Marine water body
type: Class
subclass of: Lentic water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-12T21:36:50Z
description: On average, seawater in the world's oceans has a salinity of about 3.5% (35 g/l, 35 ppt, 599 mM).
alternative label: marine waterbody body of marine water
definition: A significant accumulation of saline water which is part of a marine biome.

Axiom
annotated source: Marine water body
annotated property: description
annotated target: On average, seawater in the world's oceans has a salinity of about 3.5% (35 g/l, 35 ppt, 599 mM).
source: https://en.wikipedia.org/wiki/Seawater https://www.wikidata.org/wiki/Q184395

Axiom
annotated source: Marine water body
annotated property: definition
annotated target: A significant accumulation of saline water which is part of a marine biome.
has db xref: http://purl.obolibrary.org/obo/ENVO_00001999

Axiom
annotated source: Marine water body
annotated property: exactMatch
annotated target: http://purl.obolibrary.org/obo/ENVO_00001999
comment: I altered the definition slightly from ENVO to include "...accumulation of SALINE water..." but have left this as owl:equivalentClass since ENVO axiomatizes 'marine water body' (http://purl.obolibrary.org/obo/ENVO_00001999) as 'composed primarily of some sea water'. MPS changed from owl:equivalentClass being used as an Annot Prop to skos:exactMatch

Sea
type: Class
subclass of: Marine water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-12T21:38:14Z
definition: A large expanse of saline water usually connected with an ocean.

Axiom
annotated source: Sea
annotated property: definition
annotated target: A large expanse of saline water usually connected with an ocean.
source: http://purl.obolibrary.org/obo/ENVO_00000016

Measurement method
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-12T23:21:32Z
definition: The manner, procedure or technique by which a morphological or physiological state or property in a single individual or sample or a group of individuals or samples is assessed and a quantitative or qualitative value assigned.

Axiom
annotated source: Measurement method
annotated property: definition
annotated target: The manner, procedure or technique by which a morphological or physiological state or property in a single individual or sample or a group of individuals or samples is assessed and a quantitative or qualitative value assigned.
source: http://purl.obolibrary.org/obo/MMO_0000000

Environmental measurement type
type: Class
subclass of: MeasurementType
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-14T18:23:43Z
definition: A measurement type taken of some non-living chemical or physical component of the environment.

Axiom
annotated source: Environmental measurement type
annotated property: definition
annotated target: A measurement type taken of some non-living chemical or physical component of the environment.
has db xref: https://en.wikipedia.org/wiki/Abiotic_component, accessed 2021-04-14 https://www.wikidata.org/wiki/Q461335, accessed 2021-06-14

Salmonid species name or identifier
type: Class
subclass of: Organism name or identifier
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-14T18:47:11Z

Fish sex measurement type
type: Class
subclass of: Fish measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-14T19:59:20Z
comment: May be better to map to PATO, that has some potentially better definitions-- e.g. biological sex: http://purl.obolibrary.org/obo/PATO_0000047 phenotypic sex: http://purl.obolibrary.org/obo/PATO_0001894
definition: A categorical measurement type which describes the sex of a fish or group of fish(es), where sex is defined as the assemblage of physical properties or qualities of a fish by which male is distinguished from female; the physical difference between male and female; the distinguishing peculiarity of male or female.

Axiom
annotated source: Fish sex measurement type
annotated property: closeMatch
annotated target: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C28421
comment: This URI does not appear to dereference to the term. Including this URL, https://bioportal.bioontology.org/ontologies/NCIT?p=classes&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C28421, to ensure findability.

Axiom
annotated source: Fish sex measurement type
annotated property: definition
annotated target: A categorical measurement type which describes the sex of a fish or group of fish(es), where sex is defined as the assemblage of physical properties or qualities of a fish by which male is distinguished from female; the physical difference between male and female; the distinguishing peculiarity of male or female.
has db xref: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C28421

Temperature measurement type
type: Class
subclass of: Environmental measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-14T22:18:17Z
description: Temperature is measured with thermometers that may be calibrated to a variety of temperature scales. Most scientists measure temperature using the Celsius scale and thermodynamic temperature using the Kelvin scale, which is the Celsius scale offset so that its null point is 0K = −273.15°C, or absolute zero. The basic unit of temperature in the International System of Units (SI) is the kelvin. It has the symbol K.
equivalent class: http://purl.dataone.org/odo/ECSO_00001104
alternative label: temp temperature
definition: The degree of hotness or coldness of a body or environment (corresponding to its molecular activity).

Axiom
annotated source: Temperature measurement type
annotated property: description
annotated target: Temperature is measured with thermometers that may be calibrated to a variety of temperature scales. Most scientists measure temperature using the Celsius scale and thermodynamic temperature using the Kelvin scale, which is the Celsius scale offset so that its null point is 0K = −273.15°C, or absolute zero. The basic unit of temperature in the International System of Units (SI) is the kelvin. It has the symbol K.
source: http://purl.dataone.org/odo/ECSO_00001104

Axiom
annotated source: Temperature measurement type
annotated property: definition
annotated target: The degree of hotness or coldness of a body or environment (corresponding to its molecular activity).
source: http://purl.dataone.org/odo/ECSO_00001104

Air temperature
type: Class
subclass of: Temperature measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-14T22:18:45Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.
definition: Objective comparative measure of hot or cold of air.

Axiom
annotated source: Air temperature
annotated property: definition
annotated target: Objective comparative measure of hot or cold of air.
source: http://purl.dataone.org/odo/ECSO_00001225

Stream water temperature
type: Class
subclass of: Freshwater temperature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-14T22:18:53Z
definition: Objective comparative measure of hot or cold of water in a stream.

Axiom
annotated source: Stream water temperature
annotated property: definition
annotated target: Objective comparative measure of hot or cold of water in a stream.
source: https://orcid.org/0000-0002-5300-3075

Precipitation measurement type
type: Class
subclass of: Environmental measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-14T22:31:36Z
definition: Measurement types which pertain to any product of the condensation of atmospheric water vapor that falls under gravity.

Axiom
annotated source: Precipitation measurement type
annotated property: definition
annotated target: Measurement types which pertain to any product of the condensation of atmospheric water vapor that falls under gravity.
has db xref: http://purl.dataone.org/odo/ECSO_00001237

Inlet
type: Class
subclass of: Water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:37:33Z
definition: An opening of the sea into the land, or of a lake into its shore.

Axiom
annotated source: Inlet
annotated property: definition
annotated target: An opening of the sea into the land, or of a lake into its shore.
source: http://purl.obolibrary.org/obo/ENVO_00000475

Coastal inlet
type: Class
subclass of: Inlet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:39:14Z
definition: An opening of the sea into the land.

Axiom
annotated source: Coastal inlet
annotated property: definition
annotated target: An opening of the sea into the land.
source: http://purl.obolibrary.org/obo/ENVO_00000137

Bay
type: Class
subclass of: Coastal inlet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:39:18Z
definition: An area of water bordered by land on three sides.

Axiom
annotated source: Bay
annotated property: definition
annotated target: An area of water bordered by land on three sides.
source: http://purl.obolibrary.org/obo/ENVO_00000032

Cove
type: Class
subclass of: Coastal inlet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:39:55Z
definition: A circular or round inlet with a narrow entrance.

Axiom
annotated source: Cove
annotated property: definition
annotated target: A circular or round inlet with a narrow entrance.
source: http://purl.obolibrary.org/obo/ENVO_00000138

Sound
type: Class
subclass of: Coastal inlet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:39:58Z
definition: A large sea or ocean inlet larger than a bay, deeper than a bight, wider than a fjord, or it may identify a narrow sea or ocean channel between two bodies of land.

Axiom
annotated source: Sound
annotated property: definition
annotated target: A large sea or ocean inlet larger than a bay, deeper than a bight, wider than a fjord, or it may identify a narrow sea or ocean channel between two bodies of land.
source: http://purl.obolibrary.org/obo/ENVO_00000393

Fjord
type: Class
subclass of: Coastal inlet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:40:03Z
definition: A long and narrow sea inlet with high steeply sloped walled sides. A fjord is a landform created during a period of glaciation.

Axiom
annotated source: Fjord
annotated property: definition
annotated target: A long and narrow sea inlet with high steeply sloped walled sides. A fjord is a landform created during a period of glaciation.
source: http://purl.obolibrary.org/obo/ENVO_00000039

Lake inlet
type: Class
subclass of: Inlet
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:47:50Z
definition: An opening of a lake into its shore.

Axiom
annotated source: Lake inlet
annotated property: definition
annotated target: An opening of a lake into its shore.
source: http://purl.obolibrary.org/obo/ENVO_00000476

Creek
type: Class
subclass of: Stream
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:50:11Z
comment: Term not currently in ENVO, will be submitted for consideration to ENVO curation team. 03AUG2021
alternative label: Brook
definition: A stream that is usually smaller than a river.

Axiom
annotated source: Creek
annotated property: definition
annotated target: A stream that is usually smaller than a river.
source: https://en.wikipedia.org/wiki/Creek, accessed 2021-04-15 https://www.wikidata.org/wiki/Q63565252, accessed 2021-04-15

Watercourse
type: Class
subclass of: Lotic water body
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T18:52:49Z
definition: A flowing body of water.

Axiom
annotated source: Watercourse
annotated property: definition
annotated target: A flowing body of water.
source: http://purl.obolibrary.org/obo/ENVO_00000029

Measuring the distance between scale circuli
type: Class
subclass of: Fish age determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T19:25:23Z
comment: A Basic Guide to Aging & Identification of Pacific Salmon Scales by Alaska Department of Fish & Game is available at: https://www.adfg.alaska.gov/static/education/educators/curricula/pdfs/salmon_scales_guide_aging_identification.pdf
definition: A method which is used to approximate the age of a fish, and which generally involves removing and preserving a scale from a fish, then counting the number of annuli (i.e. year marks).

Axiom
annotated source: Measuring the distance between scale circuli
annotated property: definition
annotated target: A method which is used to approximate the age of a fish, and which generally involves removing and preserving a scale from a fish, then counting the number of annuli (i.e. year marks).
has db xref: https://spo.nmfs.noaa.gov/sites/default/files/legacy-pdfs/leaflet488.pdf, accessed 2021-04-15

Counting otolith annuli
type: Class
subclass of: Fish age determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T19:27:37Z
comment: Alaska Department of Fish & Game, Division of Fisheries Rehabilitation, Enchancement and Development's report on Juvenile Salmonid Otolith Extraction and Preparation Techniques for Microscopic Examination can be accessed at: https://www.adfg.alaska.gov/fedaidpdfs/FRED.132.pdf
definition: A method which is used to approximate the age of a fish and which generally involves extracting the otoliths from a fish, then counting the number of annuli (i.e. year marks).

Axiom
annotated source: Counting otolith annuli
annotated property: definition
annotated target: A method which is used to approximate the age of a fish and which generally involves extracting the otoliths from a fish, then counting the number of annuli (i.e. year marks).
has db xref: https://www.adfg.alaska.gov/fedaidpdfs/FRED.132.pdf, accessed 2021-04-15

Fish age proxy measurement type
type: Class
subclass of: Proxy measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T19:38:17Z
description: Fish ages are often estimated using proxy measurements, such as the space or distance between scale circuli.

Distance between scale circuli
type: Class
subclass of: Fish age proxy measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T19:38:49Z
description: Circuli are more widely spaced in warmer months when food is abundant and growth is rapid, and more narrowly spaced in colder months when food availability is low and growth slows.
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.
definition: The measured distance between the fine ridges of a scale (i.e. circuli) which are laid down annually in a circular pattern around the focus, or center, of a scale as the growth of the fish proceeds.

Axiom
annotated source: Distance between scale circuli
annotated property: description
annotated target: Circuli are more widely spaced in warmer months when food is abundant and growth is rapid, and more narrowly spaced in colder months when food availability is low and growth slows.
source: https://spo.nmfs.noaa.gov/sites/default/files/legacy-pdfs/leaflet488.pdf, accessed 2021-04-15

Axiom
annotated source: Distance between scale circuli
annotated property: definition
annotated target: The measured distance between the fine ridges of a scale (i.e. circuli) which are laid down annually in a circular pattern around the focus, or center, of a scale as the growth of the fish proceeds.
source: https://spo.nmfs.noaa.gov/sites/default/files/legacy-pdfs/leaflet488.pdf, accessed 2021-04-15

Aquatic temperature
type: Class
subclass of: Temperature measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T20:49:21Z
definition: Objective comparative measure of hot or cold of water temperature in an aquatic environment.

Axiom
annotated source: Aquatic temperature
annotated property: definition
annotated target: Objective comparative measure of hot or cold of water temperature in an aquatic environment.
source: http://orcid.org/0000-0002-5300-3075

Male
type: Class
subclass of: Fish sex measurement type
disjoint with: Female
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T20:51:04Z
equivalent class: http://purl.obolibrary.org/obo/PATO_0000384
definition: A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.

Female
type: Class
subclass of: Fish sex measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-15T20:51:08Z
equivalent class: http://purl.obolibrary.org/obo/PATO_0000383
definition: A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.

Chinook salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-16T18:10:30Z
alternative label: "Sikayujak" @ipk "Ggaal" [Denaakk'e, Koyukon Athabaskan] "Gath" [Benhti Kenaga, Lower Tanana] "Luk Choo" @gwi "Kiagtaq" @ypk "Taryaqvak" @ypk "Aciirturtet" @ypk "sumgax̂" @ale [Unangam tunuu variant] "chaguchax̂" @ale [Unangam tunuu variant] "chavichax̂" @ale [Unangam tunuu variant] "Aamasuuk" [Alutiiq/Sugpiaq] "Liliksak" [Alutiiq/Sugpiaq] "Luk'ece'e" [Ahtna] "Kentsinai'i" [Ahtna] "luq'aka'a" [Kenai Dena'ina] "nudlaghi" [Kenai Dena'ina] "te'ya'lee" @eya "Yee" @tsi @tli "t'á" @tsi @tli
alternative label: Oncorhynchus tshawytscha O. tshawytscha "king salmon" @en "Quinnat salmon" @en "spring salmon" @en "chrome hog" @en "Blackmouth" @en "Tyee salmon" @en

Axiom
annotated source: Chinook salmon
annotated property: altLabel
annotated target: "Sikayujak" @ipk "Ggaal" [Denaakk'e, Koyukon Athabaskan] "Gath" [Benhti Kenaga, Lower Tanana] "Luk Choo" @gwi "Kiagtaq" @ypk "Taryaqvak" @ypk "Aciirturtet" @ypk "sumgax̂" @ale [Unangam tunuu variant] "chaguchax̂" @ale [Unangam tunuu variant] "chavichax̂" @ale [Unangam tunuu variant] "Aamasuuk" [Alutiiq/Sugpiaq] "Liliksak" [Alutiiq/Sugpiaq] "Luk'ece'e" [Ahtna] "Kentsinai'i" [Ahtna] "luq'aka'a" [Kenai Dena'ina] "nudlaghi" [Kenai Dena'ina] "te'ya'lee" @eya "Yee" @tsi @tli "t'á" @tsi @tli
source: https://alaskasalmonandpeople.org/regions/, accessed 2021-04-16
comment: Indigenous names for salmon can be found by exploring each SASAP region's page on the State of Alaska's Salmon and People website (for example, see the Arctic Region here: https://alaskasalmonandpeople.org/region/arctic/)

Axiom
annotated source: Chinook salmon
annotated property: altLabel
annotated target: Oncorhynchus tshawytscha O. tshawytscha "king salmon" @en "Quinnat salmon" @en "spring salmon" @en "chrome hog" @en "Blackmouth" @en "Tyee salmon" @en
source: https://en.wikipedia.org/wiki/Chinook_salmon, accessed 2021-04-16
source: https://www.wikidata.org/wiki/Q833503, accessed 2021-04-16

Chum salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-16T18:10:52Z
alternative label: "Iqalugruaq" @ipk "Aqalugruaq" @ipk "Noolaaghe" [Denaakk'e, Koyukon Athabaskan] "Nahdlii" @gwi "Shii" @gwi "Aluyak" @ypk "Iqalluk" @ypk "Kangitneq" @ypk "Mac'utaq" @ypk "Teggmaarrluk" @ypk [Unangam tunuu variant] "x̂aykix̂" @ale "Alimaq" [Alutiiq/Sugpiaq] "alima" [Kenai Dena'ina] "tiitl'" @eya "Gaynii"@tsi @tli "téel'" @tsi @tli
alternative label: Oncorhynchus keta O. keta "dog salmon" @en "keta salmon" @en "silverbrite salmon" @en

Axiom
annotated source: Chum salmon
annotated property: altLabel
annotated target: "Iqalugruaq" @ipk "Aqalugruaq" @ipk "Noolaaghe" [Denaakk'e, Koyukon Athabaskan] "Nahdlii" @gwi "Shii" @gwi "Aluyak" @ypk "Iqalluk" @ypk "Kangitneq" @ypk "Mac'utaq" @ypk "Teggmaarrluk" @ypk [Unangam tunuu variant] "x̂aykix̂" @ale "Alimaq" [Alutiiq/Sugpiaq] "alima" [Kenai Dena'ina] "tiitl'" @eya "Gaynii"@tsi @tli "téel'" @tsi @tli
source: https://alaskasalmonandpeople.org/regions/, accessed 2021-04-16
comment: Indigenous names for salmon can be found by exploring each SASAP region's page on the State of Alaska's Salmon and People website (for example, see the Arctic Region here: https://alaskasalmonandpeople.org/region/arctic/)

Axiom
annotated source: Chum salmon
annotated property: altLabel
annotated target: Oncorhynchus keta O. keta "dog salmon" @en "keta salmon" @en "silverbrite salmon" @en
source: Chum salmon
source: Q475211

Pink salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-16T18:10:57Z
alternative label: "Amaqtuq" @ipk "Amaqaayak" @ypk "Amaqsuq" @ypk "Cuqpeq" @ypk "Terteq" @ypk "Qungaayux" @ale [Unangam tunuu variant] "Amartuq" [Alutiiq/Sugpiaq] "Amaqaayak" [Alutiiq/Sugpiaq] "Dak'aay" [Ahtna] "Dak'aagi" [Ahtna] "qughuna" [Kenai Dena'ina] "giyah sdilahL" @eyk "kaashk'" @eyk "Sti'moon" @tsi @tli "Cháas'" @tsi @tli
alternative label: Oncorhynchus gorbuscha O. gorbuscha "humpback salmon" @en "humpbacked salmon" @en

Axiom
annotated source: Pink salmon
annotated property: altLabel
annotated target: "Amaqtuq" @ipk "Amaqaayak" @ypk "Amaqsuq" @ypk "Cuqpeq" @ypk "Terteq" @ypk "Qungaayux" @ale [Unangam tunuu variant] "Amartuq" [Alutiiq/Sugpiaq] "Amaqaayak" [Alutiiq/Sugpiaq] "Dak'aay" [Ahtna] "Dak'aagi" [Ahtna] "qughuna" [Kenai Dena'ina] "giyah sdilahL" @eyk "kaashk'" @eyk "Sti'moon" @tsi @tli "Cháas'" @tsi @tli
source: https://alaskasalmonandpeople.org/regions/, accessed 2021-04-16
comment: Indigenous names for salmon can be found by exploring each SASAP region's page on the State of Alaska's Salmon and People website (for example, see the Arctic Region here: https://alaskasalmonandpeople.org/region/arctic/)

Axiom
annotated source: Pink salmon
annotated property: altLabel
annotated target: Oncorhynchus gorbuscha O. gorbuscha "humpback salmon" @en "humpbacked salmon" @en
source: Pink salmon
source: Q673380

Sockeye salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-16T18:11:02Z
alternative label: "Cayak" @ypk "Sayak" @ypk "Niklliq" [Alutiiq/Sugpiaq] "Nulaeggi" [Ahtna] "Sesluugge"' [Ahtna] "Natael luugge'" [Ahtna] "k'q'uya" [Kenai Dena'ina] "tahi'id" @eyk "cha'ch" @eyk "Misoo" @tsi @tli "g̲aat" @tsi @tli
alternative label: Oncorhynchus nerka O. nerka "red salmon" @en "kokanee" @en "kokanee salmon" @en "blueback salmon" @en "blue-back" @en "Fraser River salmon" @en "redfish" @en "sock-eye salmon" @en "sox" @en

Axiom
annotated source: Sockeye salmon
annotated property: altLabel
annotated target: "Cayak" @ypk "Sayak" @ypk "Niklliq" [Alutiiq/Sugpiaq] "Nulaeggi" [Ahtna] "Sesluugge"' [Ahtna] "Natael luugge'" [Ahtna] "k'q'uya" [Kenai Dena'ina] "tahi'id" @eyk "cha'ch" @eyk "Misoo" @tsi @tli "g̲aat" @tsi @tli
source: https://alaskasalmonandpeople.org/regions/, accessed 2021-04-16
comment: Indigenous names for salmon can be found by exploring each SASAP region's page on the State of Alaska's Salmon and People website (for example, see the Arctic Region here: https://alaskasalmonandpeople.org/region/arctic/)

Axiom
annotated source: Sockeye salmon
annotated property: altLabel
annotated target: Oncorhynchus nerka O. nerka "red salmon" @en "kokanee" @en "kokanee salmon" @en "blueback salmon" @en "blue-back" @en "Fraser River salmon" @en "redfish" @en "sock-eye salmon" @en "sox" @en
source: Sockeye salmon
source: Q44064

Coho salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-16T18:11:22Z
alternative label: "Saanlaaghe" [Denaakk'e, Koyukon Athabaskan] "Khwyhts'en'" [Benhti Kenaga, Lower Tanana] "Shii" @gwi "Caayuryaq" @ypk "Qakiiyaq" @ypk "Qavlunaq" @ypk "Uqurliq" @ypk "Qakiidax̂: @ale [Unangam tunuu variant] "Qakiiyaq" [Alutiiq/Sugpiaq] "ta'ay" @eyk "ÜÜx" @tsi @tli "L'ook" @tsi @tli
alternative label: Oncorhynchus kisutch O. kisutch "silver salmon" @en "silvers" @en

Axiom
annotated source: Coho salmon
annotated property: altLabel
annotated target: "Saanlaaghe" [Denaakk'e, Koyukon Athabaskan] "Khwyhts'en'" [Benhti Kenaga, Lower Tanana] "Shii" @gwi "Caayuryaq" @ypk "Qakiiyaq" @ypk "Qavlunaq" @ypk "Uqurliq" @ypk "Qakiidax̂: @ale [Unangam tunuu variant] "Qakiiyaq" [Alutiiq/Sugpiaq] "ta'ay" @eyk "ÜÜx" @tsi @tli "L'ook" @tsi @tli
source: https://alaskasalmonandpeople.org/regions/, accessed 2021-04-16
comment: Indigenous names for salmon can be found by exploring each SASAP region's page on the State of Alaska's Salmon and People website (for example, see the Arctic Region here: https://alaskasalmonandpeople.org/region/arctic/)

Axiom
annotated source: Coho salmon
annotated property: altLabel
annotated target: Oncorhynchus kisutch O. kisutch "silver salmon" @en "silvers" @en
source: Coho salmon
source: Q934874

Unknown sex
type: Class
subclass of: Fish sex measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-19T18:26:55Z

Immature
type: Class
subclass of: Fish sex measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-21T21:15:55Z

Life history stage of salmonid fish
type: Class
subclass of: Fish measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-21T23:42:02Z
equivalent class: http://rs.tdwg.org/dwc/terms/lifeStage
definition: The age class or life stage of the biological individual(s) at the time the occurrence was recorded.

Axiom
annotated source: Life history stage of salmonid fish
annotated property: definition
annotated target: The age class or life stage of the biological individual(s) at the time the occurrence was recorded.
has db xref: http://rs.tdwg.org/dwc/terms/lifeStage

Egg
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-21T23:42:09Z
definition: In fish, the term egg usually refers to female haploid gametes.

Axiom
annotated source: Egg
annotated property: definition
annotated target: In fish, the term egg usually refers to female haploid gametes.
source: http://www.fishbase.us/glossary/Glossary.php?q=egg&language=english&sc=is, accessed 2021-06-15

Alevin
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-21T23:42:13Z
definition: Larval salmon that have hatched but have not yet completely absorbed their yolk sacs and usually have not yet emerged from the gravel.

Axiom
annotated source: Alevin
annotated property: definition
annotated target: Larval salmon that have hatched but have not yet completely absorbed their yolk sacs and usually have not yet emerged from the gravel.
source: http://www.fishbase.us/glossary/Glossary.php?q=alevin&language=english&sc=is, accessed 2021-04-21

Smolt
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-21T23:42:21Z
definition: 1) A young salmonid which has developed silvery coloring on its sides, obscuring the parr marks, and which is about to migrate or has just migrated into the sea, 2) to undergo the transformation from parr to smolt.

Axiom
annotated source: Smolt
annotated property: definition
annotated target: 1) A young salmonid which has developed silvery coloring on its sides, obscuring the parr marks, and which is about to migrate or has just migrated into the sea, 2) to undergo the transformation from parr to smolt.
source: https://www.fishbase.in/Glossary/Glossary.php?q=smolt&language=english&sc=is, accessed 2021-04-21

Fry
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-21T23:42:38Z
definition: A young fish at the post-larval stage. May include all fish stages from hatching to fingerling. An advanced fry is any young fish from the start of exogenous feeding after the yolk is absorbed while a sac fry is from hatching to yolk sac absorption. In Salmonidae the stage from end of dependence on the yolk sac as the primary source of nutrition to dispersal from the redd.

Axiom
annotated source: Fry
annotated property: definition
annotated target: A young fish at the post-larval stage. May include all fish stages from hatching to fingerling. An advanced fry is any young fish from the start of exogenous feeding after the yolk is absorbed while a sac fry is from hatching to yolk sac absorption. In Salmonidae the stage from end of dependence on the yolk sac as the primary source of nutrition to dispersal from the redd.
source: http://www.fishbase.us/glossary/Glossary.php?q=fry&language=english&sc=is, accessed 2021-04-21

Adult
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-21T23:42:40Z
definition: Fish that have fully developed morphological and meristic characters and that have attained sexual maturity.

Axiom
annotated source: Adult
annotated property: definition
annotated target: Fish that have fully developed morphological and meristic characters and that have attained sexual maturity.
source: http://www.fishbase.us/glossary/Glossary.php?q=adult&language=english&sc=is, accessed 2021-04-21

Numeric age of fish
type: Class
subclass of: Fish age measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T00:00:18Z
definition: Elapsed time, typically expressed in years, (a) since birth or (b) which describes the how long a salmon has spent in a particular environment (e.g. saltwater vs. freshwater).

Axiom
annotated source: Numeric age of fish
annotated property: definition
annotated target: Elapsed time, typically expressed in years, (a) since birth or (b) which describes the how long a salmon has spent in a particular environment (e.g. saltwater vs. freshwater).
source: http://orcid.org/0000-0002-5300-3075

Fish age notation type
type: Class
subclass of: Notation type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T00:00:42Z
definition: A standardized notation format for describing the age of a salmon.

Axiom
annotated source: Fish age notation type
annotated property: definition
annotated target: A standardized notation format for describing the age of a salmon.
source: http://orcid.org/0000-0002-5300-3075

Freshwater temperature
type: Class
subclass of: Aquatic temperature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T04:05:19Z
definition: The objective measure of hot or cold in freshwater (i.e. non-saline water).

Axiom
annotated source: Freshwater temperature
annotated property: definition
annotated target: The objective measure of hot or cold in freshwater (i.e. non-saline water).
has db xref: https://en.wikipedia.org/wiki/Temperature, accessed 2021-04-22 https://www.wikidata.org/wiki/Q11466, accessed 2021-04-22

Seawater temperature
type: Class
subclass of: Aquatic temperature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T04:05:29Z
definition: An objective measure of hot or cold of water in a marine (i.e. ocean or sea) environment.

River water temperature
type: Class
subclass of: Stream water temperature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T16:35:07Z
definition: The objective measure of hot or cold of water in a river.

Axiom
annotated source: River water temperature
annotated property: definition
annotated target: The objective measure of hot or cold of water in a river.
has db xref: https://en.wikipedia.org/wiki/Temperature, accessed 2021-04-22 https://www.wikidata.org/wiki/Q11466, accessed 2021-04-22

Lake water temperature
type: Class
subclass of: Freshwater temperature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T16:36:05Z
definition: Objective comparative measure of hot or cold of water in a lake.

Axiom
annotated source: Lake water temperature
annotated property: definition
annotated target: Objective comparative measure of hot or cold of water in a lake.
source: http://purl.dataone.org/odo/ECSO_00001231

Sea surface temperature
type: Class
subclass of: Seawater temperature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T16:49:49Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.
alternative label: SST Ocean surface temperature
definition: An aquatic temperature which inheres in water close to the surface of an ocean or sea. The exact meaning of surface varies according to the measurement method used, but it is between 1 millimetre (0.04 in) and 20 metres (70 ft) below the sea surface.

Axiom
annotated source: Sea surface temperature
annotated property: definition
annotated target: An aquatic temperature which inheres in water close to the surface of an ocean or sea. The exact meaning of surface varies according to the measurement method used, but it is between 1 millimetre (0.04 in) and 20 metres (70 ft) below the sea surface.
source: http://purl.dataone.org/odo/ECSO_00001523

Water salinity measurement type
type: Class
subclass of: Environmental measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T17:00:09Z
description: Salinity is an important factor in determining many aspects of the chemistry of natural waters and of biological processes within it, and is a thermodynamic state variable that, along with temperature and pressure, governs physical characteristics like the density and heat capacity of the water.
definition: A measure of the saltiness or dissolved salt content of a body of water.

Axiom
annotated source: Water salinity measurement type
annotated property: description
annotated target: Salinity is an important factor in determining many aspects of the chemistry of natural waters and of biological processes within it, and is a thermodynamic state variable that, along with temperature and pressure, governs physical characteristics like the density and heat capacity of the water.
source: ECSO_00001164

Axiom
annotated source: Water salinity measurement type
annotated property: definition
annotated target: A measure of the saltiness or dissolved salt content of a body of water.
source: http://purl.dataone.org/odo/ECSO_00001164

Sea surface salinity
type: Class
subclass of: Water salinity measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T17:17:30Z
comment: Is also an Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.
definition: Salinity measured at the surface of the sea. The exact meaning of surface varies according to the measurement method used, but it is between 1 millimetre (0.04 in) and 20 metres (70 ft) below the sea surface.

Subsurface sea temperature
type: Class
subclass of: Seawater temperature
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T17:20:03Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.

Alkalinity measurement type
type: Class
subclass of: Environmental measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T17:28:15Z
definition: A measure of the quantitative capacity of an aqueous solution to neutralize an acid.

Axiom
annotated source: Alkalinity measurement type
annotated property: definition
annotated target: A measure of the quantitative capacity of an aqueous solution to neutralize an acid.
has db xref: https://en.wikipedia.org/wiki/Alkalinity, accessed 2021-04-22 https://www.wikidata.org/wiki/Q432016, accessed 2021-04-22

Freshwater alkalinity
type: Class
subclass of: Alkalinity measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T17:45:49Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.
definition: Alkalinity which is measured in freshwater.

Seawater alkalinity
type: Class
subclass of: Alkalinity measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T17:45:58Z
definition: Alkalinity which is measured in seawater.

Dissolved oxygen measurement type
type: Class
subclass of: Environmental measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T18:12:58Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.
alternative label: DO
definition: The amount of gaseous oxygen (O2) dissolved in water.

Axiom
annotated source: Dissolved oxygen measurement type
annotated property: definition
annotated target: The amount of gaseous oxygen (O2) dissolved in water.
source: https://arcos.disl.org/main/whatisDO#:~:text=Dissolved%20Oxygen%20is%20the%20amount,can%20affect%20dissolved%20oxygen%20levels, accessed 2021-04-22

Dissolved oxygen saturation
type: Class
subclass of: Dissolved oxygen measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T18:13:22Z
description: Dissolved oxygen saturation can be measured with a dissolved oxygen probe such as an oxygen sensor or an optode in liquid media, usually water. The standard unit of oxygen saturation is percent (%).
comment: http://purl.dataone.org/odo/ECSO_00002386
alternative label: DOsat
definition: A relative measure of the concentration of oxygen that is dissolved or carried in a given medium as a proportion of the maximal concentration that can be dissolved in that medium.

Axiom
annotated source: Dissolved oxygen saturation
annotated property: description
annotated target: Dissolved oxygen saturation can be measured with a dissolved oxygen probe such as an oxygen sensor or an optode in liquid media, usually water. The standard unit of oxygen saturation is percent (%).
source: https://en.wikipedia.org/wiki/Oxygen_saturation, accessed 22April2021 https://www.wikidata.org/wiki/Q6294669, accessed 22April2021

Axiom
annotated source: Dissolved oxygen saturation
annotated property: definition
annotated target: A relative measure of the concentration of oxygen that is dissolved or carried in a given medium as a proportion of the maximal concentration that can be dissolved in that medium.
source: https://en.wikipedia.org/wiki/Oxygen_saturation, accessed 22April2021 https://www.wikidata.org/wiki/Q6294669, accessed 22April2021

Dissolved oxygen concentration
type: Class
subclass of: Dissolved oxygen measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-22T18:13:32Z
comment: http://purl.dataone.org/odo/ECSO_00001669
alternative label: DO concentration
definition: A concentration of the amount of oxygen present in water.

Salmonid Type
type: Class
subclass of: Salmonid species name or identifier
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T20:17:29Z
alternative label: Scientific name Binomial name Binomen Latin name
definition: In biological taxonomy, Type generically refers to the official name applied to a taxon. This Class constrains Type members as belonging to family Salmonidae

Axiom
annotated source: Salmonid Type
annotated property: definition
annotated target: In biological taxonomy, Type generically refers to the official name applied to a taxon. This Class constrains Type members as belonging to family Salmonidae
source: C43459

Oncorhynchus gorbuscha
type: Class
subclass of: Oncorhynchus spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T20:17:52Z
description: Oncorhynchus gorbuscha (i.e. pink salmon) is the smallest and most abundant of the five species of Pacific salmon. Physical Description: In the ocean, pink salmon are bright silver fish. After returning to their spawning streams, their coloring changes to pale grey on the back with yellowish-white belly (although some turn an overall dull green color). As with all salmon, in addition to the dorsal fin, they also have an adipose fin. The fish is characterized by a white mouth with black gums, no teeth on the tongue, large oval-shaped black spots on the back, a v-shaped tail, and an anal fin with 13-17 soft rays. During their spawning migration, males develop a pronounced humped back, hence their nickname "humpies". Pink salmon average 4.8 pounds (2.2 kg) in weight. The maximum recorded size was 30 inches (76 cm) and 15 pounds (6.8 kg). Range: The native range of the species is in the Pacific and Arctic coastal waters and rivers, from the Sacramento River in northern California to the Mackenzie River in Canada; and in the west from the Lena River in Siberia to Korea and Honshu in Japan. In North America pink salmon spawn from the Mackenzie River in the Arctic to as far south as tributaries of Puget Sound, Washington, although they were also reported in the San Lorenzo River near Santa Cruz, California in 1915 and the Sacramento River in northern California in the 1950s. In 2013 a new record for the southernmost extent of spawning pink salmon was published for the Salinas River. In the fall of 2017 a dozen pink salmon were counted in Lagunitas Creek about 25 miles (40 km) north of San Francisco, California.
has db xref: NCBI:txid8017 ITIS: 161975 (https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161975#null) GBIF: 5204037 (https://www.gbif.org/species/5204037) EOL: 46563135 (https://eol.org/pages/46563135) COL: 74N5S (https://www.catalogueoflife.org/data/taxon/74N5S) Wikidata: Q673380 (https://www.wikidata.org/wiki/Q673380)
alternative label: O. gorbuscha
definition: The class which contains all instances of Oncorhynchus gorbuscha.

Axiom
annotated source: Oncorhynchus gorbuscha
annotated property: description
annotated target: Oncorhynchus gorbuscha (i.e. pink salmon) is the smallest and most abundant of the five species of Pacific salmon. Physical Description: In the ocean, pink salmon are bright silver fish. After returning to their spawning streams, their coloring changes to pale grey on the back with yellowish-white belly (although some turn an overall dull green color). As with all salmon, in addition to the dorsal fin, they also have an adipose fin. The fish is characterized by a white mouth with black gums, no teeth on the tongue, large oval-shaped black spots on the back, a v-shaped tail, and an anal fin with 13-17 soft rays. During their spawning migration, males develop a pronounced humped back, hence their nickname "humpies". Pink salmon average 4.8 pounds (2.2 kg) in weight. The maximum recorded size was 30 inches (76 cm) and 15 pounds (6.8 kg). Range: The native range of the species is in the Pacific and Arctic coastal waters and rivers, from the Sacramento River in northern California to the Mackenzie River in Canada; and in the west from the Lena River in Siberia to Korea and Honshu in Japan. In North America pink salmon spawn from the Mackenzie River in the Arctic to as far south as tributaries of Puget Sound, Washington, although they were also reported in the San Lorenzo River near Santa Cruz, California in 1915 and the Sacramento River in northern California in the 1950s. In 2013 a new record for the southernmost extent of spawning pink salmon was published for the Salinas River. In the fall of 2017 a dozen pink salmon were counted in Lagunitas Creek about 25 miles (40 km) north of San Francisco, California.
has db xref: https://en.wikipedia.org/wiki/Pink_salmon, accessed 2021-06-15 https://www.wikidata.org/wiki/Q673380, accessed 2021-06-15

Oncorhynchus keta
type: Class
subclass of: Oncorhynchus spp.
subclass of: Class
  intersection of: Restriction
    on property: nameAccordingTo
    some values from: Author citation
  intersection of: Restriction
    on property: scientificName
    some values from: Taxon (name)
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T20:18:47Z
description: Oncorhynchus keta (i.e. chum salmon) is one of the five species of Pacific salmon. Physical Description: The body of the chum salmon is deeper than most salmonid species. In common with other species found in the Pacific, the anal fin has 12 to 20 rays, compared with a maximum of 12 in European species. Chum have an ocean coloration of silvery blue green with some indistinct spotting in a darker shade, and a rather paler belly. When they move into fresh water the color changes to dark olive green and the belly color deepens. When adults are near spawning, they have purple blotchy streaks near the caudal peduncle, darker towards the tail. Spawning males typically grow an elongated snout or kype, their lower fins become tipped with white and they have enlarged teeth. Some researchers speculate these characteristics are used to compete for mates. Range: Chum salmon have the largest natural range of any Pacific salmon, and undergo the longest migrations within the genus Oncorhynchus, far up the Yukon River and deep into the Amur River basin in Asia. In lesser numbers they migrate thousands of kilometres up the Mackenzie River. Chum are found around the north Pacific, in the waters of Korea, Japan, and the Okhotsk and Bering seas (Kamchatka, Chukotka, Kuril Islands, Sakhalin, Khabarovsk Krai, Primorsky Krai), British Columbia in Canada, and from Alaska to California in the United States. In the Arctic Ocean they are found in limited numbers from the Laptev Sea to the Beaufort Sea. In North America chum salmon spawn from the Mackenzie River in the Arctic to as far south as Tillamook Bay, Oregon, although they were also reported in the San Lorenzo River near Santa Cruz, California in 1915 and the Sacramento River in northern California in the 1950s. In fall 2017 a half dozen chum salmon were counted in Lagunitas Creek about 25 miles (40 km) north of San Francisco, California.
has db xref: NCBI:txid8018 ITIS: 161976 (https://itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161976#null) GBIF: 5204014 (https://www.gbif.org/species/5204014) EOL: 46563136 (https://eol.org/pages/46563136) COL: 49JF6 (https://www.catalogueoflife.org/data/taxon/49JF6) Wikidata: Q475211 (https://www.wikidata.org/wiki/Q475211)
alternative label: O. keta
definition: The class which contains all instances of Oncorhynchus keta.

Axiom
annotated source: Oncorhynchus keta
annotated property: description
annotated target: Oncorhynchus keta (i.e. chum salmon) is one of the five species of Pacific salmon. Physical Description: The body of the chum salmon is deeper than most salmonid species. In common with other species found in the Pacific, the anal fin has 12 to 20 rays, compared with a maximum of 12 in European species. Chum have an ocean coloration of silvery blue green with some indistinct spotting in a darker shade, and a rather paler belly. When they move into fresh water the color changes to dark olive green and the belly color deepens. When adults are near spawning, they have purple blotchy streaks near the caudal peduncle, darker towards the tail. Spawning males typically grow an elongated snout or kype, their lower fins become tipped with white and they have enlarged teeth. Some researchers speculate these characteristics are used to compete for mates. Range: Chum salmon have the largest natural range of any Pacific salmon, and undergo the longest migrations within the genus Oncorhynchus, far up the Yukon River and deep into the Amur River basin in Asia. In lesser numbers they migrate thousands of kilometres up the Mackenzie River. Chum are found around the north Pacific, in the waters of Korea, Japan, and the Okhotsk and Bering seas (Kamchatka, Chukotka, Kuril Islands, Sakhalin, Khabarovsk Krai, Primorsky Krai), British Columbia in Canada, and from Alaska to California in the United States. In the Arctic Ocean they are found in limited numbers from the Laptev Sea to the Beaufort Sea. In North America chum salmon spawn from the Mackenzie River in the Arctic to as far south as Tillamook Bay, Oregon, although they were also reported in the San Lorenzo River near Santa Cruz, California in 1915 and the Sacramento River in northern California in the 1950s. In fall 2017 a half dozen chum salmon were counted in Lagunitas Creek about 25 miles (40 km) north of San Francisco, California.
has db xref: https://en.wikipedia.org/wiki/Chum_salmon, accessed 2021-06-15 https://www.wikidata.org/wiki/Q475211, accessed 2021-06-15

Oncorhynchus kisutch
type: Class
subclass of: Oncorhynchus spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T20:18:52Z
description: Oncorhynchus kisutch (i.e. coho salmon) is one of the five species of Pacific salmon. Physical Description: During their ocean phase, coho salmon have silver sides and dark-blue backs. During their spawning phase, their jaws and teeth become hooked. After entering fresh water, they develop bright-red sides, bluish-green heads and backs, dark bellies and dark spots on their backs. Sexually maturing fish develop a light-pink or rose shading along the belly, and the males may show a slight arching of the back. Mature adults have a pronounced red skin color with darker backs and average 28 inches (71 cm) and 7 to 11 pounds (3.2 to 5.0 kg), occasionally reaching up to 36 pounds (16 kg). They also develop a large kype (hooked beak) during spawning. Mature females may be darker than males, with both showing a pronounced hook on the nose. Range: The traditional range of the coho salmon runs along both sides of the North Pacific Ocean, from Hokkaidō, Japan and eastern Russia, around the Bering Sea to mainland Alaska, and south to Monterey Bay, California. Coho salmon have also been introduced in all the Great Lakes, as well as many landlocked reservoirs throughout the United States. A number of specimens, (more than 20), were caught in waters surrounding Denmark and Norway in 2017. Their source is currently unknown, but the salmon species is farmed at several locations in Europe, making it probable that the animal has slipped the net at such a farm.
has db xref: NCBI:txid8019 ITIS: 161977 (https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161977#null) GBIF: 5204034 (https://www.gbif.org/species/5204034) EOL: 46563137 (https://eol.org/pages/46563137) COL: 49JF8 (https://www.catalogueoflife.org/data/taxon/49JF8) Wikidata: Q934874 (https://www.wikidata.org/wiki/Q934874)
alternative label: O. kisutch
definition: The class which contains all instances of Oncorhynchus kisutch.

Axiom
annotated source: Oncorhynchus kisutch
annotated property: description
annotated target: Oncorhynchus kisutch (i.e. coho salmon) is one of the five species of Pacific salmon. Physical Description: During their ocean phase, coho salmon have silver sides and dark-blue backs. During their spawning phase, their jaws and teeth become hooked. After entering fresh water, they develop bright-red sides, bluish-green heads and backs, dark bellies and dark spots on their backs. Sexually maturing fish develop a light-pink or rose shading along the belly, and the males may show a slight arching of the back. Mature adults have a pronounced red skin color with darker backs and average 28 inches (71 cm) and 7 to 11 pounds (3.2 to 5.0 kg), occasionally reaching up to 36 pounds (16 kg). They also develop a large kype (hooked beak) during spawning. Mature females may be darker than males, with both showing a pronounced hook on the nose. Range: The traditional range of the coho salmon runs along both sides of the North Pacific Ocean, from Hokkaidō, Japan and eastern Russia, around the Bering Sea to mainland Alaska, and south to Monterey Bay, California. Coho salmon have also been introduced in all the Great Lakes, as well as many landlocked reservoirs throughout the United States. A number of specimens, (more than 20), were caught in waters surrounding Denmark and Norway in 2017. Their source is currently unknown, but the salmon species is farmed at several locations in Europe, making it probable that the animal has slipped the net at such a farm.
has db xref: https://en.wikipedia.org/wiki/Coho_salmon, accessed 2021-06-15 https://www.wikidata.org/wiki/Q934874, accessed 2021-06-15

Oncorhynchus nerka
type: Class
subclass of: Oncorhynchus spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T20:19:04Z
description: Oncorhynchus nerka (i.e. sockeye salmon) is one of the five species of Pacific salmon. Physical Description: The sockeye salmon is sometimes called red or blueback salmon, due to its color. Sockeye are blue tinged with silver in color while living in the ocean. When they return to spawning grounds, their bodies become red and their heads turn green. Sockeye can be anywhere from 60 to 84 cm (2 ft 0 in–2 ft 9 in) in length and weigh from 2.3 to 7 kg (5–15 lb). Two distinguishing features are their long, serrated gill rakers that range from 30 to 40 in number, and their lack of a spot on their tail or back. Range: Sockeye salmon range as far south as the Columbia River in the eastern Pacific (although individuals have been spotted as far south as the 10 Mile River on the Mendocino Coast of California) and in northern Hokkaidō Island in Japan in the western Pacific. They range as far north as the Bathurst Inlet in the Canadian Arctic in the east and the Anadyr River in Siberia in the west. The farthest inland sockeye salmon travel is to Redfish Lake, Idaho, over 1,400 km (900 mi) from the ocean and 2,000 m (6,500 ft) in elevation. In the United States, populations of sockeye salmon have been extirpated from Idaho and Oregon.
has db xref: NCBI:txid8023 ITIS: 161979 (https://itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161979#null) GBIF: 5204039 (https://www.gbif.org/species/5204039) EOL: 46563140 (https://eol.org/pages/46563140, currently produces an error 505) COL: 49JFH (https://www.catalogueoflife.org/data/taxon/49JFH) Wikidata: Q44064 (https://www.wikidata.org/wiki/Q44064)
alternative label: O. nerka
definition: The class which contains all instances of Oncorhynchus nerka.

Axiom
annotated source: Oncorhynchus nerka
annotated property: description
annotated target: Oncorhynchus nerka (i.e. sockeye salmon) is one of the five species of Pacific salmon. Physical Description: The sockeye salmon is sometimes called red or blueback salmon, due to its color. Sockeye are blue tinged with silver in color while living in the ocean. When they return to spawning grounds, their bodies become red and their heads turn green. Sockeye can be anywhere from 60 to 84 cm (2 ft 0 in–2 ft 9 in) in length and weigh from 2.3 to 7 kg (5–15 lb). Two distinguishing features are their long, serrated gill rakers that range from 30 to 40 in number, and their lack of a spot on their tail or back. Range: Sockeye salmon range as far south as the Columbia River in the eastern Pacific (although individuals have been spotted as far south as the 10 Mile River on the Mendocino Coast of California) and in northern Hokkaidō Island in Japan in the western Pacific. They range as far north as the Bathurst Inlet in the Canadian Arctic in the east and the Anadyr River in Siberia in the west. The farthest inland sockeye salmon travel is to Redfish Lake, Idaho, over 1,400 km (900 mi) from the ocean and 2,000 m (6,500 ft) in elevation. In the United States, populations of sockeye salmon have been extirpated from Idaho and Oregon.
has db xref: https://en.wikipedia.org/wiki/Sockeye_salmon, accessed 2021-06-15 https://www.wikidata.org/wiki/Q44064, accessed 2021-06-15

Oncorhynchus tshawytscha
type: Class
subclass of: Oncorhynchus spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T20:19:15Z
description: Oncorhynchus tshawytscha (i.e. Chinook salmon) is the largest of the five species of Pacific salmon. Physical Description: The Chinook is blue-green, red, or purple on the back and top of the head, with silvery sides and white ventral surfaces. It has black spots on its tail and the upper half of its body. Although spots are seen on the tail in pink salmon, and silver on the tail in coho and chum salmon, Chinook are unique among the Pacific salmon in combining black spots and silver on the tail. Another distinctive feature is a black gum line that is present in both salt and freshwater. Adult fish range in size from 24 to 36 in (61 to 91 cm), but may be up to 58 in (150 cm) in length; they average 10 to 50 lb (4.5 to 22.7 kg), but may reach 130 lb (59 kg). The meat can be either pink or white in color, depending on what the salmon have been feeding on. Range: Chinook are anadromous fish native to the North Pacific Ocean and the river systems of western North America, ranging from California to Alaska, as well as Asian rivers ranging from northern Japan to the Palyavaam River in the Arctic northeast Siberia. They have been introduced to other parts of the world, including New Zealand, thriving in Lake Michigan Great Lakes of North America and Michigan's western rivers, and Patagonia.
has db xref: NCBI:txid74940 ITIS: 161980 (https://itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161980#null) GBIF: 5204024 (https://www.gbif.org/species/5204024) EOL: 46563139 (https://eol.org/pages/46563139, currently produces and error 505) COL: 49JFR (https://www.catalogueoflife.org/data/taxon/49JFR) Wikidata: Q833503 (https://www.wikidata.org/wiki/Q833503)
alternative label: O. tshawytscha
definition: The class which contains all instances of Oncorhynchus tshawytscha.

Axiom
annotated source: Oncorhynchus tshawytscha
annotated property: description
annotated target: Oncorhynchus tshawytscha (i.e. Chinook salmon) is the largest of the five species of Pacific salmon. Physical Description: The Chinook is blue-green, red, or purple on the back and top of the head, with silvery sides and white ventral surfaces. It has black spots on its tail and the upper half of its body. Although spots are seen on the tail in pink salmon, and silver on the tail in coho and chum salmon, Chinook are unique among the Pacific salmon in combining black spots and silver on the tail. Another distinctive feature is a black gum line that is present in both salt and freshwater. Adult fish range in size from 24 to 36 in (61 to 91 cm), but may be up to 58 in (150 cm) in length; they average 10 to 50 lb (4.5 to 22.7 kg), but may reach 130 lb (59 kg). The meat can be either pink or white in color, depending on what the salmon have been feeding on. Range: Chinook are anadromous fish native to the North Pacific Ocean and the river systems of western North America, ranging from California to Alaska, as well as Asian rivers ranging from northern Japan to the Palyavaam River in the Arctic northeast Siberia. They have been introduced to other parts of the world, including New Zealand, thriving in Lake Michigan Great Lakes of North America and Michigan's western rivers, and Patagonia.
has db xref: https://en.wikipedia.org/wiki/Chinook_salmon, accessed 2021-06-15 https://www.wikidata.org/wiki/Q833503, accessed 2021-06-15

Quality of a population measurement type
type: Class
subclass of: MeasurementType
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T22:37:24Z
description: Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism.
comment: [NEEDS ALIGNMENT] http://purl.obolibrary.org/obo/PCO_0000003
definition: A quality that inheres in a population of organisms.

Axiom
annotated source: Quality of a population measurement type
annotated property: description
annotated target: Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism.
source: PCO_0000003

Axiom
annotated source: Quality of a population measurement type
annotated property: definition
annotated target: A quality that inheres in a population of organisms.
source: PCO_0000003

Notation type
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T23:10:08Z
comment: [NEEDS ALIGNMENT] http://semanticscience.org/resource/SIO_001385
definition: A series or system of written symbols used to represent numbers, amounts, or elements.

Axiom
annotated source: Notation type
annotated property: definition
annotated target: A series or system of written symbols used to represent numbers, amounts, or elements.
source: SIO_001385
has db xref: https://en.wikipedia.org/wiki/Notation, accessed 2021-06-14 https://www.wikidata.org/wiki/Q2001982, accessed 2021-06-14

Salmon escapement count
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T23:21:35Z
definition: The number of salmon which do not get caught by commercial or recreational fisheries and return to their freshwater spawning habitat.

Axiom
annotated source: Salmon escapement count
annotated property: definition
annotated target: The number of salmon which do not get caught by commercial or recreational fisheries and return to their freshwater spawning habitat.
has db xref: https://en.wikipedia.org/wiki/Salmon_escapement, accessed 2021-04-26 https://www.wikidata.org/wiki/Q23582242, accessed 2021-04-26

Annual escapement count
type: Class
subclass of: Salmon escapement count
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T23:24:51Z
comment: Need to think more about how to model time over which measurement is taken. E.g. do we want to have separate terms for annual escapement counts vs. daily escapement counts, OR have a predicate which encapsulates the time period over which a measurement occurs, OR something else?
definition: The number of salmon from a given population that escape the fishery in a year.

Daily escapement count
type: Class
subclass of: Salmon escapement count
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T23:24:56Z
comment: Compare with "Annual escapement count" Need to think more about how to model time over which measurement is taken. E.g. do we want to have separate terms for annual escapement counts vs. daily escapement counts, OR have a predicate which encapsulates the time period over which a measurement occurs, OR something else?
definition: The number of salmon from a given population that escape the fishery in a day.

Bycatch abundance
type: Class
subclass of: Fish abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T23:38:07Z
comment: Amount of Bycatch

Number of otolith annuli
type: Class
subclass of: Fish age proxy measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-27T21:37:46Z
description: Otoliths, or "earstones" (structures formed of calcium in the heads of bony fishes, and which function as organs of balance), grow concentrically from the center origin. Factors, such as watertemperature, that affect fish growth cause seasonal changes in the density of layers laid down in otoliths and in some cases it is possible to determine fish age from the banding that results. When otoliths are viewed under a low-power microscope, the layers making up spring and summer growth appear as a white, opaque band. Layers laid down in the fall, and also in the winter in some fishes, appear as a dark translucent band. A light and a dark band together make up the annual growth, and age in years is determined by counting the number of dark bands.
definition: The number of annuli on a given otolith.

Axiom
annotated source: Number of otolith annuli
annotated property: description
annotated target: Otoliths, or "earstones" (structures formed of calcium in the heads of bony fishes, and which function as organs of balance), grow concentrically from the center origin. Factors, such as watertemperature, that affect fish growth cause seasonal changes in the density of layers laid down in otoliths and in some cases it is possible to determine fish age from the banding that results. When otoliths are viewed under a low-power microscope, the layers making up spring and summer growth appear as a white, opaque band. Layers laid down in the fall, and also in the winter in some fishes, appear as a dark translucent band. A light and a dark band together make up the annual growth, and age in years is determined by counting the number of dark bands.
source: https://spo.nmfs.noaa.gov/sites/default/files/legacy-pdfs/leaflet488.pdf, accessed 2021-04-27

Axiom
annotated source: Number of otolith annuli
annotated property: definition
annotated target: The number of annuli on a given otolith.
has db xref: https://spo.nmfs.noaa.gov/sites/default/files/legacy-pdfs/leaflet488.pdf, accessed 2021-04-27

Proxy measurement type
type: Class
subclass of: Fish measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-27T22:01:23Z
comment: [ADDRESS COMMENT, THEN DELETE] This probably isn't the best place for this, since there may be proxy measures for non-fish measurement types; leaving for now but need input on the best way to model these in general
definition: A variable that is not in itself directly measured but inferred, and that serves in place of an unobservable or immeasurable variable. In order for a variable to be a good proxy, it must have a close correlation, not necessarily linear, with the variable of interest. This correlation might be either positive or negative.

Axiom
annotated source: Proxy measurement type
annotated property: definition
annotated target: A variable that is not in itself directly measured but inferred, and that serves in place of an unobservable or immeasurable variable. In order for a variable to be a good proxy, it must have a close correlation, not necessarily linear, with the variable of interest. This correlation might be either positive or negative.
source: Proxy (statistics)

External sex determination method
type: Class
subclass of: Fish sex determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-27T23:56:52Z
comment: Sex determined on basis of organism's external morphology

Internal sex determination method
type: Class
subclass of: Fish sex determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-27T23:57:03Z
comment: Determination of fish gender based on internal examination, e.g. examination of gonads

Genetic sexing
type: Class
subclass of: Fish sex determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-27T23:57:56Z
comment: Determination of fish gender based on genetic evidence rather than morphological evidence alone This may be a good resource: https://www.fws.gov/r7/fisheries/genetics/pdf/09_rf_2004_OlsenMillerHarperNaglerVanHattenWhittonWenburg_OS.pdf

Hermaphrodite
type: Class
subclass of: Fish sex measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-27T23:59:24Z
comment: Used to designate that some individual or individuals in a group of organisms possessed functional qualities of more than one gender, simultaneously or sequentially.

Sexual dimorphic characteristic
type: Class
subclass of: External sex determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-28T00:02:33Z
comment: A method that uses the presence or other features of a trait ("characteristic") of an organism to differentiate or assign gender

Salmon harvest count
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-28T18:15:41Z
definition: The number of recruits which survive to a legal age and/or size and are captured by a fishery.

Axiom
annotated source: Salmon harvest count
annotated property: definition
annotated target: The number of recruits which survive to a legal age and/or size and are captured by a fishery.
source: http://orcid.org/0000-0002-5300-3075

Commercial harvest count
type: Class
subclass of: Salmon harvest count
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-28T18:15:54Z
comment: Estimates of number of fish caught based on some commerical harvest

Fish biomass
type: Class
subclass of: Quality of a population measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-28T18:42:51Z
comment: A measurement of the weight of a fish, or of a sample of fish/fishes

Taxon concept
type: Class
equivalent class: Class
  intersection of: Restriction
    on property: nameAccordingTo
    some values from: Author citation
  intersection of: Restriction
    on property: scientificName
    some values from: Taxon (name)
subclass of: Organism name or identifier
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-28T19:23:01Z
alternative label: taxonomic concept
definition: A reference which is made to a taxon name along with a publication which explains how the author intends for the name to be applied.

Axiom
annotated source: Taxon concept
annotated property: definition
annotated target: A reference which is made to a taxon name along with a publication which explains how the author intends for the name to be applied.
source: https://github.com/darwin-sw/dsw/wiki/ClassTaxon#equivalence-of-taxon-and-taxoncon-%20cept-in-the-tdwg-ontology-and-the-darwin-core-standard, accessed 2021-04-28

Author citation
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-28T20:18:16Z
description: The International Code of Zoological Nomenclature (ICZN), a widely accepted convention in zoology that rules the formal scientific naming of organisms treated as animals, establishes guidelines for author citation. See Chapter 11 of the Fourth Edition.
comment: For example, in 1758 Linnaeus gave the Asian elephant the scientific name Elephas maximus, so the name is sometimes written as "Elephas maximus Linnaeus, 1758".
alternative label: taxonomic authority authority
definition: The name of the scientist or scientists who first validly published the scientific name of a particular organism.

Axiom
annotated source: Author citation
annotated property: description
annotated target: The International Code of Zoological Nomenclature (ICZN), a widely accepted convention in zoology that rules the formal scientific naming of organisms treated as animals, establishes guidelines for author citation. See Chapter 11 of the Fourth Edition.
has db xref: https://code.iczn.org/authorship/article-51-citation-of-names-of-authors/?frame=1, accessed 2021-04-28

Axiom
annotated source: Author citation
annotated property: comment
annotated target: For example, in 1758 Linnaeus gave the Asian elephant the scientific name Elephas maximus, so the name is sometimes written as "Elephas maximus Linnaeus, 1758".
source: https://en.wikipedia.org/wiki/Taxonomy_(biology), accessed 2021-04-28

Axiom
annotated source: Author citation
annotated property: definition
annotated target: The name of the scientist or scientists who first validly published the scientific name of a particular organism.
has db xref: https://en.wikipedia.org/wiki/Taxonomy_(biology), accessed 2021-04-28

Fish abundance
type: Class
subclass of: Quality of a population measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-28T21:29:53Z
comment: General Class for organizing various measurements and estimates of the Abundance of Fish, that can involve methods focusing on assessments during different life-stages, using different harvest methods, etc.

Modeled salmon abundance
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-29T18:39:15Z
comment: Abundance of salmon estimated from modeling techniques, rather than direct counts, weights, etc.

Pre-fishery abundance
type: Class
subclass of: Modeled salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-29T18:44:25Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.
comment: [ADDRESS COMMENT, THEN DELETE] needs defintion

Quality of an ecological community
type: Class
subclass of: MeasurementType
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-29T18:48:45Z
definition: A quality that inheres in a community.

Axiom
annotated source: Quality of an ecological community
annotated property: definition
annotated target: A quality that inheres in a community.
source: PCO_0000004

Salmon abundance
type: Class
subclass of: Fish abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-29T19:01:14Z
comment: A measurement or estimate of the number of salmon, based on counts, densities, weights, or other methods.

Spawner abundance
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-29T19:02:08Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust. The ESV list uses the label 'Adult spawning stock abundance' rather than 'Spawner abundance.'
alternative label: adult spawning stock abundance adult spawning stock
definition: The total number of recruits which successfully return to spawn in freshwater habitats for a given brood year.

Axiom
annotated source: Spawner abundance
annotated property: definition
annotated target: The total number of recruits which successfully return to spawn in freshwater habitats for a given brood year.
source: http://orcid.org/0000-0002-5300-3075

Juvenile standing stock abundance
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-29T19:02:18Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.

Juvenile
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-29T19:11:32Z
definition: Young fish, mostly similar in form to adult but not yet sexually mature (Hubbs, 1943). In some cases refers to a stage unlike the adult in appearance.

Axiom
annotated source: Juvenile
annotated property: definition
annotated target: Young fish, mostly similar in form to adult but not yet sexually mature (Hubbs, 1943). In some cases refers to a stage unlike the adult in appearance.
source: http://www.fishbase.us/glossary/Glossary.php?q=juvenile&language=english&sc=is, accessed 2021-06-15

Year of fish harvest
type: Class
subclass of: year of measurement
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T17:21:40Z
comment: The Year in which some commercial fish harvest was taken. Given a Class structure here to enable filtering by Year(s) of interest, although this temporal descriptor could and should also be assigned to any observations of "Commercial Fish Harvest", e.g. potentially by using the SOSA:PhenomenonTime attribute.

Year of commercial fish harvest
type: Class
subclass of: Year of fish harvest
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T17:21:48Z
comment: The Year in which some commercial fish harvest was taken. Given a Class structure here to enable filtering by Year(s) of interest, although this temporal descriptor could and should also be assigned to any observations of "Commercial Fish Harvest", e.g. potentially by using the SOSA:PhenomenonTime attribute.
related match: Commercial harvest count

Brood year
type: Class
subclass of: year of measurement
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T17:25:52Z
definition: The parental year for a group of returning salmon, i.e. the calendar year when the majority of parents of these fish spawned.

Axiom
annotated source: Brood year
annotated property: definition
annotated target: The parental year for a group of returning salmon, i.e. the calendar year when the majority of parents of these fish spawned.
source: https://www.pac.dfo-mpo.gc.ca/fm-gp/salmon-saumon/gloss-eng.html, accessed 2021-05-04

Left pectoral fin clip
type: Class
subclass of: Pectoral fin clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T19:41:04Z
definition: The left pectoral fin of the fish is removed.

Axiom
annotated source: Left pectoral fin clip
annotated property: definition
annotated target: The left pectoral fin of the fish is removed.
source: http://orcid.org/0000-0002-5300-3075

Species code
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T19:41:18Z
comment: [NEEDS ALIGNMENT] http://purl.dataone.org/odo/ECSO_00002490
definition: A numeric or alphanumeric code, which represents a particular species and may be recorded in place of a formal scientific or vernacular name.

Axiom
annotated source: Species code
annotated property: definition
annotated target: A numeric or alphanumeric code, which represents a particular species and may be recorded in place of a formal scientific or vernacular name.
source: http://orcid.org/0000-0002-5300-3075

Fish tag code or color
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T19:41:34Z
definition: The unique alphanumeric code or marking color(s) of a tagged fish.

Axiom
annotated source: Fish tag code or color
annotated property: definition
annotated target: The unique alphanumeric code or marking color(s) of a tagged fish.
source: http://orcid.org/0000-0002-5300-3075

ADF&G species code
type: Class
subclass of: Species code
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T19:44:10Z
comment: ADF&G salmon species codes: 410 salmon, chinook 420 salmon, sockeye 430 salmon, coho 440 salmon, pink 450 salmon, chum
alternative label: Alaska Department of Fish and Wildlife species code
definition: The Alaska Department of Fish and Game defines unique three-digit "Codes for the Commercial Operator's Annual Report" which represent each of the commercially harvested aquatic species.

Axiom
annotated source: ADF&G species code
annotated property: comment
annotated target: ADF&G salmon species codes: 410 salmon, chinook 420 salmon, sockeye 430 salmon, coho 440 salmon, pink 450 salmon, chum
source: https://www.adfg.alaska.gov/static/license/fishing/pdfs/coar_fish_codes.pdf, accessed 04May2021

Axiom
annotated source: ADF&G species code
annotated property: definition
annotated target: The Alaska Department of Fish and Game defines unique three-digit "Codes for the Commercial Operator's Annual Report" which represent each of the commercially harvested aquatic species.
has db xref: https://www.adfg.alaska.gov/static/license/fishing/pdfs/coar_fish_codes.pdf, accessed 04May2021

Fishing gear code
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T19:58:20Z
definition: A numeric or alphanumeric code, which represents a particular type of fishing gear or equipment.

ADF&G gear code
type: Class
subclass of: Fishing gear code
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T19:58:32Z
comment: ADF&G gear codes: 01 purse seine 02 beach seine 03 drift gillnet 04 set gillnet 05 hand line/jig/troll 07 non-pelagic/bottom trawl 08 fish wheel 10 ring net 11 diving 12 handpicked 13 dip net 14 weir 15 power gurdy troll 17 beam trawl 18 shovel 21 pound 22 dredge 23 hydro/mechanical dredge 25 dinglebar 26 mechanical jigs 27 double otter trawl 34 herring gillnet 37 pair trawl 41 sunken gillnet 47 pelagic/mid-water trawl 61 longline (hook and line) 77 fish ladder/raceway 90 trap 91 pot gear 99 other (please specify)
alternative label: Alaska Department of Fish and Game gear code
definition: The Alaska Department of Fish and Game defines unique two-digit "Codes for the Commercial Operator's Annual Report" which represent each of the gear types and harvest methods used Alaskan fisheries.

Axiom
annotated source: ADF&G gear code
annotated property: comment
annotated target: ADF&G gear codes: 01 purse seine 02 beach seine 03 drift gillnet 04 set gillnet 05 hand line/jig/troll 07 non-pelagic/bottom trawl 08 fish wheel 10 ring net 11 diving 12 handpicked 13 dip net 14 weir 15 power gurdy troll 17 beam trawl 18 shovel 21 pound 22 dredge 23 hydro/mechanical dredge 25 dinglebar 26 mechanical jigs 27 double otter trawl 34 herring gillnet 37 pair trawl 41 sunken gillnet 47 pelagic/mid-water trawl 61 longline (hook and line) 77 fish ladder/raceway 90 trap 91 pot gear 99 other (please specify)
source: https://www.adfg.alaska.gov/static/license/fishing/pdfs/coar_fish_codes.pdf, accessed 04May2021

Axiom
annotated source: ADF&G gear code
annotated property: definition
annotated target: The Alaska Department of Fish and Game defines unique two-digit "Codes for the Commercial Operator's Annual Report" which represent each of the gear types and harvest methods used Alaskan fisheries.
has db xref: https://www.adfg.alaska.gov/static/license/fishing/pdfs/coar_fish_codes.pdf, accessed 04May2021

Sample code
type: Class
subclass of: Region or location code
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T21:54:57Z
alternative label: sample id
definition: A numeric or alphanumeric code which represents a particular sample. A sample is defined as a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, analysis, inspection, investigation, demonstration, or trial use.
related match: SIO_001050

Axiom
annotated source: Sample code
annotated property: definition
annotated target: A numeric or alphanumeric code which represents a particular sample. A sample is defined as a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, analysis, inspection, investigation, demonstration, or trial use.
has db xref: SIO_001050

Fish sample code
type: Class
subclass of: Sample code
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T21:55:17Z
definition: An identifier, which may be assigned to a physical sample taken from a fish (e.g. tissue, fin, otolith) or an entire fish specimen.

Axiom
annotated source: Fish sample code
annotated property: definition
annotated target: An identifier, which may be assigned to a physical sample taken from a fish (e.g. tissue, fin, otolith) or an entire fish specimen.
source: http://orcid.org/0000-0002-5300-3075

Fish tag or identification type
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T22:55:08Z
comment: An overview of many popular tag types and methods: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05
definition: A marking which is used to differentiate individual fish or groups of fish(es).

Axiom
annotated source: Fish tag or identification type
annotated property: definition
annotated target: A marking which is used to differentiate individual fish or groups of fish(es).
source: http://orcid.org/0000-0002-5300-3075

Coded wire tag
type: Class
subclass of: Subcutaneous tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T23:17:44Z
description: This identification type will often last the entire life of the fish, is primarily used for group marking, and is most suitable for fish at least 2.5cm in length. The fish must be euthanized for reading. The tags are delivered on a spool, and the tagging machine magnetises, cuts and inserts the tag into the fish. While a detector can be used to determine if a fish is marked or not, a fish must be euthanized in order to remove the tag and read the engraved code.
alternative label: CWT
definition: A small metal pin which is inserted into the fish, usually into the cartilage of the snout.

Axiom
annotated source: Coded wire tag
annotated property: description
annotated target: This identification type will often last the entire life of the fish, is primarily used for group marking, and is most suitable for fish at least 2.5cm in length. The fish must be euthanized for reading. The tags are delivered on a spool, and the tagging machine magnetises, cuts and inserts the tag into the fish. While a detector can be used to determine if a fish is marked or not, a fish must be euthanized in order to remove the tag and read the engraved code.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Coded wire tag
annotated property: definition
annotated target: A small metal pin which is inserted into the fish, usually into the cartilage of the snout.
source: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05
has db xref: https://en.wikipedia.org/wiki/Coded_wire_tag, accessed 2021-05-05 https://www.wikidata.org/wiki/Q23581650, accessed 2021-05-05

Genetic identification
type: Class
subclass of: Fish tag or identification type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-04T23:17:57Z
description: There are four main methods for collecting tissue samples for DNA sequencing: (1) collecting a fin sample, (2) swabbing the mucus layer of the fish, (3) collecting a scale sample, and (4) blood sampling. Genetic identification can provide better answers to some questions that are also answered through typical fish marking and tagging, such as effective population size, whether populations differ and the degree of inbreeding. However, genetic identification cannot answer questions about, for example migration patterns, movement in the water and growth.
definition: The use of a DNA sample to identify fish which have known biomarkers.

Axiom
annotated source: Genetic identification
annotated property: description
annotated target: There are four main methods for collecting tissue samples for DNA sequencing: (1) collecting a fin sample, (2) swabbing the mucus layer of the fish, (3) collecting a scale sample, and (4) blood sampling. Genetic identification can provide better answers to some questions that are also answered through typical fish marking and tagging, such as effective population size, whether populations differ and the degree of inbreeding. However, genetic identification cannot answer questions about, for example migration patterns, movement in the water and growth.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Genetic identification
annotated property: definition
annotated target: The use of a DNA sample to identify fish which have known biomarkers.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Internal acoustic tag
type: Class
subclass of: Acoustic tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:20:13Z
description: This type of identification can remain in a fish for several years, is used for individual tagging, and is most suitable for fish that weigh at least 100g (given current technology). Tags may be inserted several different ways: (a) placed in a fish's stomach using a finger or guide, (b) implanted in the abdominal cavity, or (c) anchored inside the abdomen, usually to the abdominal wall with stiches. Data is transmitted wirelessly, usually through the use of radio waves (in fresh water and air), acoustic signals (in water; the receiver must also be in the water) or via satellite communication (in air; the tag sends data after it releases from the fish and floats up to the surface). Many types of telemetry devices also act as bio-loggers and store information locally on the device. Reading is done using the tag’s associated equipment, often through a computer connection.
definition: A small, electronic, sound-emitting device which is placed inside a fish and collects information on that fish's physiology and/or movement patterns.

Axiom
annotated source: Internal acoustic tag
annotated property: description
annotated target: This type of identification can remain in a fish for several years, is used for individual tagging, and is most suitable for fish that weigh at least 100g (given current technology). Tags may be inserted several different ways: (a) placed in a fish's stomach using a finger or guide, (b) implanted in the abdominal cavity, or (c) anchored inside the abdomen, usually to the abdominal wall with stiches. Data is transmitted wirelessly, usually through the use of radio waves (in fresh water and air), acoustic signals (in water; the receiver must also be in the water) or via satellite communication (in air; the tag sends data after it releases from the fish and floats up to the surface). Many types of telemetry devices also act as bio-loggers and store information locally on the device. Reading is done using the tag’s associated equipment, often through a computer connection.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Internal acoustic tag
annotated property: definition
annotated target: A small, electronic, sound-emitting device which is placed inside a fish and collects information on that fish's physiology and/or movement patterns.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Adipose fin clip
type: Class
subclass of: Fin or maxilla clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:20:22Z
description: When done correctly, this identification type will last the entire life of the fish, and is used for group marking.
definition: The adipose fin is removed using scissors or a razor blade.

Axiom
annotated source: Adipose fin clip
annotated property: description
annotated target: When done correctly, this identification type will last the entire life of the fish, and is used for group marking.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Adipose fin clip
annotated property: definition
annotated target: The adipose fin is removed using scissors or a razor blade.
source: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Bismarck brown dye tag
type: Class
subclass of: Dye tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:23:36Z
description: This type of identification can remain on a fish from a couple days up to several weeks, and is used for group marking. and is most suitable for fish
alternative label: Bismarck brown Machester brown Phenylene brown Bismarck brown Y C.I. 21000 C.I. Basic Brown 1 Basic Brown 1 Vesuvine BA
definition: Tag based on application of a dilution of diazo dye in which fish are immersed and which stains the fins a brown/tan color.

Axiom
annotated source: Bismarck brown dye tag
annotated property: description
annotated target: This type of identification can remain on a fish from a couple days up to several weeks, and is used for group marking. and is most suitable for fish
has db xref: https://fishbio.com/field-notes/inside-fishbio/spray-on-tan, accessed 05May2021

Axiom
annotated source: Bismarck brown dye tag
annotated property: altLabel
annotated target: Bismarck brown Machester brown Phenylene brown Bismarck brown Y C.I. 21000 C.I. Basic Brown 1 Basic Brown 1 Vesuvine BA
source: https://en.wikipedia.org/wiki/Bismarck_brown_Y, accessed 05May2021

Axiom
annotated source: Bismarck brown dye tag
annotated property: definition
annotated target: Tag based on application of a dilution of diazo dye in which fish are immersed and which stains the fins a brown/tan color.
has db xref: https://fishbio.com/field-notes/inside-fishbio/spray-on-tan, accessed 2021-05-05 https://en.wikipedia.org/wiki/Bismarck_brown_Y, accessed 2021-05-05

Calcein dye tag
type: Class
subclass of: Dye tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:24:43Z
description: Though not well studied, this type of identification may last up to 3 years post-immersion, and is used for group marking.
alternative label: SE-MARK
definition: Tag based on application of a dilution of fluorochrome dye in which fish are immersed and which binds to bony structures (such as fin rays, jaw bones, and scales), manifesting as a green fluorescence.

Axiom
annotated source: Calcein dye tag
annotated property: description
annotated target: Though not well studied, this type of identification may last up to 3 years post-immersion, and is used for group marking.
comment: https://doi.org/10.1577/M02-143, accessed 2021-05-05

Axiom
annotated source: Calcein dye tag
annotated property: altLabel
annotated target: SE-MARK
source: https://www.fws.gov/guidance/sites/default/files/documents/Calcein_%28SE%20Mark%29_Study_Protocol.pdf, accessed 2021-05-05

Axiom
annotated source: Calcein dye tag
annotated property: definition
annotated target: Tag based on application of a dilution of fluorochrome dye in which fish are immersed and which binds to bony structures (such as fin rays, jaw bones, and scales), manifesting as a green fluorescence.
has db xref: https://www.fws.gov/guidance/sites/default/files/documents/Calcein_%28SE%20Mark%29_Study_Protocol.pdf, accessed 2021-05-05

Freeze brand
type: Class
subclass of: Fish body modification
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:25:55Z
description: This identification type may be clearly visible for several months and can be felt for up to a year, is primarily used for group marking, and is most suitable for salmonids that are at least 7.5cm in length. Freeze branding is done by cooling a metal rod and/or brand in liquid nitrogen, then pressing the rod lightly against the fish for ~3sec. A dark spot is temporarily created and the fish's scales are deformed. The dark spot disappears after about a month, while the deformation of the scales can be seen at certain light angles and felt with fingers for up to a year.
definition: A scar made on the dermal tissue using liquid nitrogen.

Axiom
annotated source: Freeze brand
annotated property: description
annotated target: This identification type may be clearly visible for several months and can be felt for up to a year, is primarily used for group marking, and is most suitable for salmonids that are at least 7.5cm in length. Freeze branding is done by cooling a metal rod and/or brand in liquid nitrogen, then pressing the rod lightly against the fish for ~3sec. A dark spot is temporarily created and the fish's scales are deformed. The dark spot disappears after about a month, while the deformation of the scales can be seen at certain light angles and felt with fingers for up to a year.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Freeze brand
annotated property: definition
annotated target: A scar made on the dermal tissue using liquid nitrogen.
has db xref: https://doi.org/10.1186/2050-3385-1-18, accessed 2021-05-05

Dye tag
type: Class
subclass of: Fish tag or identification type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:26:27Z
comment: The URI http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C461 does not resolve to the term. Including the URL to BioPortal to ensure findability: https://bioportal.bioontology.org/ontologies/NCIT?p=classes&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C461
comment: [NEEDS ALIGHMENT] http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C461
definition: Tag based on application of chemical agents used to enhance the color or contrast of target materials or samples. Dyes have some affinity for their substrates and are usually applied in a solution.

Axiom
annotated source: Dye tag
annotated property: definition
annotated target: Tag based on application of chemical agents used to enhance the color or contrast of target materials or samples. Dyes have some affinity for their substrates and are usually applied in a solution.
source: C461

Fin or maxilla clip
type: Class
subclass of: Fish body modification
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:29:24Z
definition: The removal of a portion or entirety of a fin or the maxilla of a fish, for identification purposes.

Axiom
annotated source: Fin or maxilla clip
annotated property: definition
annotated target: The removal of a portion or entirety of a fin or the maxilla of a fish, for identification purposes.
source: http://orcid.org/0000-0002-5300-3075

Lower caudal fin clip
type: Class
subclass of: Fin or maxilla clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:30:45Z
definition: A portion of the lower caudal fin lobe is removed.

Axiom
annotated source: Lower caudal fin clip
annotated property: definition
annotated target: A portion of the lower caudal fin lobe is removed.
source: https://www.solitudelakemanagement.com/blog/know-your-pond-life-fin-clipping-for-fisheries-management-success/, accessed 2021-05-05

Upper caudal fin clip
type: Class
subclass of: Fin or maxilla clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:31:23Z
definition: A portion of the upper caudal fin lobe is removed.

Axiom
annotated source: Upper caudal fin clip
annotated property: definition
annotated target: A portion of the upper caudal fin lobe is removed.
source: https://www.solitudelakemanagement.com/blog/know-your-pond-life-fin-clipping-for-fisheries-management-success/, accessed 2021-05-05

Maxilla clip
type: Class
subclass of: Fin or maxilla clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:35:46Z
description: This identification type will last the entire lifetime of the fish, is used for group marking, and is most suitable for salmonids that are at least 10cm in length.
definition: The flap in the corner of the mouth is clipped away (the maxilla - sometimes also the supermaxilla).

Axiom
annotated source: Maxilla clip
annotated property: description
annotated target: This identification type will last the entire lifetime of the fish, is used for group marking, and is most suitable for salmonids that are at least 10cm in length.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Maxilla clip
annotated property: definition
annotated target: The flap in the corner of the mouth is clipped away (the maxilla - sometimes also the supermaxilla).
source: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Pelvic fin clip
type: Class
subclass of: Fin or maxilla clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:36:17Z
definition: One of the pelvic fins is removed using scissors.
definition: This identification type will last the lifetime of the fish, is used for group marking, and is most suitable for salmonids that are at least 7cm in length.

Axiom
annotated source: Pelvic fin clip
annotated property: definition
annotated target: One of the pelvic fins is removed using scissors.
source: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Pelvic fin clip
annotated property: definition
annotated target: This identification type will last the lifetime of the fish, is used for group marking, and is most suitable for salmonids that are at least 7cm in length.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Electronic tag
type: Class
subclass of: Fish tag or identification type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:37:48Z
alternative label: Biologger Biotelemetry tag Radio tag
definition: A tag which transmits information about a fish via an electronic receiver.

Axiom
annotated source: Electronic tag
annotated property: definition
annotated target: A tag which transmits information about a fish via an electronic receiver.
source: http://orcid.org/0000-0002-5300-3075

External acoustic tag
type: Class
subclass of: Acoustic tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:38:49Z
description: This type of identification can remain on a fish for several years, is used for individual tagging, and is most suitable for fish that weigh at least 100g (given current technology). One or more sutures are typically used to attach the tag to the fish's skin using a needle. Data is transmitted wirelessly, usually through the use of radio waves (in fresh water and air), acoustic signals (in water; the receiver must also be in the water) or via satellite communication (in air; the tag sends data after it releases from the fish and floats up to the surface). Many types of telemetry devices also act as bio-loggers and store information locally on the device. Reading is done using the tag’s associated equipment, often through a computer connection.
definition: A small, electronic, sound-emitting device which is attached externally to a fish and collects information on fish movement patterns and the physical environment.

Axiom
annotated source: External acoustic tag
annotated property: description
annotated target: This type of identification can remain on a fish for several years, is used for individual tagging, and is most suitable for fish that weigh at least 100g (given current technology). One or more sutures are typically used to attach the tag to the fish's skin using a needle. Data is transmitted wirelessly, usually through the use of radio waves (in fresh water and air), acoustic signals (in water; the receiver must also be in the water) or via satellite communication (in air; the tag sends data after it releases from the fish and floats up to the surface). Many types of telemetry devices also act as bio-loggers and store information locally on the device. Reading is done using the tag’s associated equipment, often through a computer connection.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: External acoustic tag
annotated property: definition
annotated target: A small, electronic, sound-emitting device which is attached externally to a fish and collects information on fish movement patterns and the physical environment.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05 https://en.wikipedia.org/wiki/Acoustic_tag, accessed 2021-05-05

External visual tag
type: Class
subclass of: Fish tag or identification type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:40:28Z
definition: A static tag, which is attached externally to the body of the fish and visually read or interpreted (as opposed to read with an electronic device e.g. an acoustic tag reader).

Axiom
annotated source: External visual tag
annotated property: definition
annotated target: A static tag, which is attached externally to the body of the fish and visually read or interpreted (as opposed to read with an electronic device e.g. an acoustic tag reader).
source: http://orcid.org/0000-0002-5300-3075

Carlin tag
type: Class
subclass of: External visual tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:40:41Z
description: A metal plate with a unique identifying code, which is attached to a fish below the dorsal fin via two stainless steel wires.
description: If performed correctly, this identification type may remain attached for the entire life of the fish, is used for individual tagging, and is most suitable for fish at least 15cm in length and which live in open environments. To attach a Carlin tag, double cannulas are first inserted through the fish at the height of the center of the pterygiophores (the bones that support the dorsal fin). Two stainless steel wires are then pulled through the cannulas and then the cannulas are pulled out of the fish. A small metal plate with an alphanumeric code is atached to the steel wires, which are then twisted tightly against the fish's body to hold the plate in place.

Axiom
annotated source: Carlin tag
annotated property: description
annotated target: A metal plate with a unique identifying code, which is attached to a fish below the dorsal fin via two stainless steel wires.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Carlin tag
annotated property: description
annotated target: If performed correctly, this identification type may remain attached for the entire life of the fish, is used for individual tagging, and is most suitable for fish at least 15cm in length and which live in open environments. To attach a Carlin tag, double cannulas are first inserted through the fish at the height of the center of the pterygiophores (the bones that support the dorsal fin). Two stainless steel wires are then pulled through the cannulas and then the cannulas are pulled out of the fish. A small metal plate with an alphanumeric code is atached to the steel wires, which are then twisted tightly against the fish's body to hold the plate in place.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Dart tag
type: Class
subclass of: External visual tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:43:07Z
description: If performed correctly, this type of identification can remain in place for at least a year, is used for individual tagging, and is suitable for fish at lest 20cm in length and which live in open environments. With the cannula attached to a special tag applicator, a scale is removed just below the base of the dorsal fin and the tag is attached. The barb on the tag must hook securely into the pterygiophores (the bones that supports the dorsal fin), otherwise the tag will come loose. Most of the tag then hangs outside the fish’s body like a stiff, narrow tube. The tag is colour-coded, pre-printed with relevant text and numbered by the manufacturer according to the requests of the end user.
definition: A barbed plastic tag which is inserted under the dorsal fin of the fish using a cannula.

Axiom
annotated source: Dart tag
annotated property: description
annotated target: If performed correctly, this type of identification can remain in place for at least a year, is used for individual tagging, and is suitable for fish at lest 20cm in length and which live in open environments. With the cannula attached to a special tag applicator, a scale is removed just below the base of the dorsal fin and the tag is attached. The barb on the tag must hook securely into the pterygiophores (the bones that supports the dorsal fin), otherwise the tag will come loose. Most of the tag then hangs outside the fish’s body like a stiff, narrow tube. The tag is colour-coded, pre-printed with relevant text and numbered by the manufacturer according to the requests of the end user.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Dart tag
annotated property: definition
annotated target: A barbed plastic tag which is inserted under the dorsal fin of the fish using a cannula.
source: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

RFID
type: Class
subclass of: Electronic tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:47:51Z
description: An RFID system consists of a tiny transponder, a radio receiver, and an transmitter. When triggered by an electromagnetic interrogation pulse from a nearby FRID reader device, the tag transmits digital data, usually an identifying inventory number, back to the reader.
alternative label: Radio Frequency Identification
definition: A system which uses electromagnetic fields to automatically identify and track tags attached to objects.

Axiom
annotated source: RFID
annotated property: description
annotated target: An RFID system consists of a tiny transponder, a radio receiver, and an transmitter. When triggered by an electromagnetic interrogation pulse from a nearby FRID reader device, the tag transmits digital data, usually an identifying inventory number, back to the reader.
source: https://en.wikipedia.org/wiki/Radio-frequency_identification, accessed 2021-05-05 https://www.wikidata.org/wiki/Q104954, accessed 2021-05-05

Axiom
annotated source: RFID
annotated property: definition
annotated target: A system which uses electromagnetic fields to automatically identify and track tags attached to objects.
has db xref: https://en.wikipedia.org/wiki/Radio-frequency_identification, accessed 2021-05-05 https://www.wikidata.org/wiki/Q104954, accessed 2021-05-05

PIT tag
type: Class
subclass of: RFID
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:47:58Z
alternative label: Passive Integrated Transponder tag Microchip
definition: A small, passive (i.e. does not actively send out a signal and does not require a battery) radio transponder tag which, when in range, is activated by a signal emitted from a tag reader. The tag then emits a unique identification code back to the reader.
definition: This identification type may last for several years or up to the lifetime of a fish, and is used for individual tagging. The tag is placed in the abdominal cavity or in the muscular tissue. Reading PIT tags can be done (a) automatically by detecting fish as they swim past (this is usually done by building an obstacle so that fish must pass close to the reader), or (b) manually by taking the fish up in the air to be scanned with a reader.

Axiom
annotated source: PIT tag
annotated property: definition
annotated target: A small, passive (i.e. does not actively send out a signal and does not require a battery) radio transponder tag which, when in range, is activated by a signal emitted from a tag reader. The tag then emits a unique identification code back to the reader.
has db xref: https://fishbio.com/field-notes/fish-monitoring/pit-tag-the-full-story, accessed 05May2021 https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 05May2021

Axiom
annotated source: PIT tag
annotated property: definition
annotated target: This identification type may last for several years or up to the lifetime of a fish, and is used for individual tagging. The tag is placed in the abdominal cavity or in the muscular tissue. Reading PIT tags can be done (a) automatically by detecting fish as they swim past (this is usually done by building an obstacle so that fish must pass close to the reader), or (b) manually by taking the fish up in the air to be scanned with a reader.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 05May2021

Natural pattern or unique marking
type: Class
subclass of: Fish tag or identification type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:54:30Z
description: Natural patterns or unique markings are primarily used for identification of individuals. This type of identification does not involve marking a fish in any way, but rather relies on stable and individual differences in appareance, such as color, patterns, and scars. This method is based on the use of still images or videos taken of individual fish, which are then analyzed manually or using digital image processing.
definition: An appearance that varies between individuals.

Axiom
annotated source: Natural pattern or unique marking
annotated property: description
annotated target: Natural patterns or unique markings are primarily used for identification of individuals. This type of identification does not involve marking a fish in any way, but rather relies on stable and individual differences in appareance, such as color, patterns, and scars. This method is based on the use of still images or videos taken of individual fish, which are then analyzed manually or using digital image processing.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Natural pattern or unique marking
annotated property: definition
annotated target: An appearance that varies between individuals.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Otolith marking
type: Class
subclass of: Fish body modification
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:55:56Z
description: This identification type will last the entire life of the fish and is primarily used for group marking, though the fish must be euthanized for reading. Altering the appearance of otoliths may be achieved in a variety of ways, including (a) exposing a fish to variations in water temperature of at least 3 degrees Celsius a number of times to create darker and lighter bands in the otoliths, (b) bathing the fish or eggs in an aqueous solution with fluorescent dye, which is absorbed into the otoliths, or (c) bathing the fish in strontium chloride solution or feeding the fish food that contains the metallic substance strontium.
definition: The appearance of the otoliths (located in the inner ear of the fish) are changed.

Axiom
annotated source: Otolith marking
annotated property: description
annotated target: This identification type will last the entire life of the fish and is primarily used for group marking, though the fish must be euthanized for reading. Altering the appearance of otoliths may be achieved in a variety of ways, including (a) exposing a fish to variations in water temperature of at least 3 degrees Celsius a number of times to create darker and lighter bands in the otoliths, (b) bathing the fish or eggs in an aqueous solution with fluorescent dye, which is absorbed into the otoliths, or (c) bathing the fish in strontium chloride solution or feeding the fish food that contains the metallic substance strontium.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Otolith marking
annotated property: definition
annotated target: The appearance of the otoliths (located in the inner ear of the fish) are changed.
source: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Visible implant elastomer
type: Class
subclass of: Subcutaneous color mark
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T16:58:54Z
description: When done correctly, this identification type will remain visible for the entire lifetime of the fish and can be used for group or individual marking. Neon or fluorescent colors are often used, and best placement is in light areas and fin rays, though even semi-transparent and transparent tissue may be suitable for easy visual reading.
alternative label: VIE
definition: A colored two-component plastic which is injected into the fish's epidermis or fins.

Axiom
annotated source: Visible implant elastomer
annotated property: description
annotated target: When done correctly, this identification type will remain visible for the entire lifetime of the fish and can be used for group or individual marking. Neon or fluorescent colors are often used, and best placement is in light areas and fin rays, though even semi-transparent and transparent tissue may be suitable for easy visual reading.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Visible implant elastomer
annotated property: definition
annotated target: A colored two-component plastic which is injected into the fish's epidermis or fins.
source: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Tattoo
type: Class
subclass of: Subcutaneous color mark
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T17:00:08Z
description: This type of identification is usually visible for one year on salmon, is primarily used for group marking, and is suitable for fish that weigh at least 20g. An ink solution (often Alcian blue dissolved in distilled water) is typically injected under the skin using a syringe with a cannula. Marking a fish using the "square dot system" with up to 3x3 dots is common. Unlike VIE, tattoos do not require transparent skin to be visible. However, in salmon, the tattoo should be placed in areas in front of the pelvic fins, under the pectoral fins and/or behind the anal fins to enable reading during spawning, when the fish's natural pigmentation may cover up the tattoo.
definition: An ink solution, which is injected into the skin.

Axiom
annotated source: Tattoo
annotated property: description
annotated target: This type of identification is usually visible for one year on salmon, is primarily used for group marking, and is suitable for fish that weigh at least 20g. An ink solution (often Alcian blue dissolved in distilled water) is typically injected under the skin using a syringe with a cannula. Marking a fish using the "square dot system" with up to 3x3 dots is common. Unlike VIE, tattoos do not require transparent skin to be visible. However, in salmon, the tattoo should be placed in areas in front of the pelvic fins, under the pectoral fins and/or behind the anal fins to enable reading during spawning, when the fish's natural pigmentation may cover up the tattoo.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Axiom
annotated source: Tattoo
annotated property: definition
annotated target: An ink solution, which is injected into the skin.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Subcutaneous color mark
type: Class
subclass of: Subcutaneous tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T17:00:38Z
definition: A colored marking, which is placed beneath the skin of a fish for identification.

Axiom
annotated source: Subcutaneous color mark
annotated property: definition
annotated target: A colored marking, which is placed beneath the skin of a fish for identification.
source: http://orcid.org/0000-0002-5300-3075

Fish body modification
type: Class
subclass of: Fish tag or identification type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T17:26:06Z
definition: The alteration of a physical bodily feature of a fish, either internally or externally, for identification purposes.

Axiom
annotated source: Fish body modification
annotated property: definition
annotated target: The alteration of a physical bodily feature of a fish, either internally or externally, for identification purposes.
source: http://orcid.org/0000-0002-5300-3075

Acoustic tag
type: Class
subclass of: Electronic tag
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T23:05:51Z
definition: A small, electronic, sound-emitting device which may be placed inside or attached to a fish and collects information on that fish's physiology, environmentm and/or movement patterns.

Axiom
annotated source: Acoustic tag
annotated property: definition
annotated target: A small, electronic, sound-emitting device which may be placed inside or attached to a fish and collects information on that fish's physiology, environmentm and/or movement patterns.
has db xref: https://jordbruksverket.se/download/18.38d764e9177375620998e232/1611738582157/Rapport-Fish-identification-marking-and-tagging-methods.pdf, accessed 2021-05-05

Subcutaneous tag
type: Class
subclass of: Fish tag or identification type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-05T23:07:11Z
description: A mark or tag which is placed beneath the skin of a fish.

Axiom
annotated source: Subcutaneous tag
annotated property: description
annotated target: A mark or tag which is placed beneath the skin of a fish.
source: http://orcid.org/0000-0002-5300-3075

Pectoral fin clip
type: Class
subclass of: Fin or maxilla clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-06T16:58:02Z
definition: A pectoral fin is removed, typically as close to the body as possible, using scissors or a razor blade.

Axiom
annotated source: Pectoral fin clip
annotated property: definition
annotated target: A pectoral fin is removed, typically as close to the body as possible, using scissors or a razor blade.
has db xref: https://risaa.org/newsletter/0516/0516_09.pdf, accessed 2021-05-06

Right pectoral fin clip
type: Class
subclass of: Pectoral fin clip
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-06T16:58:12Z
definition: The right pectoral fin of the fish is removed.

Axiom
annotated source: Right pectoral fin clip
annotated property: definition
annotated target: The right pectoral fin of the fish is removed.
source: http://orcid.org/0000-0002-5300-3075

Sex ratio
type: Class
subclass of: Quality of a population measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-10T22:51:40Z
definition: The ratio of males to females in a population.

Axiom
annotated source: Sex ratio
annotated property: definition
annotated target: The ratio of males to females in a population.
source: https://en.wikipedia.org/wiki/Sex_ratio, accessed 10May2021 https://www.wikidata.org/wiki/Q1068155, accessed 10May2021

Sex ratio of adult spawning stock
type: Class
subclass of: Sex ratio
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-11T00:01:35Z
definition: The proportion of males and females in an adult spawning stock.

Sex ratio of juvenile standing stock
type: Class
subclass of: Sex ratio
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-11T00:01:49Z
definition: The ratio of males and females in a juvenile standing stock.

Sex ratio of smolts
type: Class
subclass of: Sex ratio
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-11T00:02:35Z
definition: The proportion of males and females in a smolt population.

Dolly Varden trout
type: Class
subclass of: Pacific trout and char
date: 2021-05-11T17:26:36Z
comment: ADF&G says that dolly varden are actually char (http://www.adfg.alaska.gov/index.cfm%3Fadfg=dollyvarden.main), though Wikipedia suggests that they are trout (https://en.wikipedia.org/wiki/Dolly_Varden_trout). Formally, members of Genus Salvelinus are considered "char", but Dolly Varden are often interchangeably called "trout"
alternative label: Salvelinus malma S. malma "Dolly Varden" @en

Axiom
annotated source: Dolly Varden trout
annotated property: altLabel
annotated target: Salvelinus malma S. malma "Dolly Varden" @en
source: https://en.wikipedia.org/wiki/Dolly_Varden_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q327067, accessed 2021-06-15

Steelhead trout
type: Class
subclass of: Pacific trout and char
type: NamedIndividual
type: Oncorhynchus mykiss
scientific name: Oncorhynchus mykiss irideus
hasADF&GCode: 540
alternative label: Oncorhynchus mykiss irideus Oncorhynchus m. irideus O. m. irideus "steelhead" @en
date: 2021-05-11T17:26:46Z
creator: http://orcid.org/0000-0002-5300-3075

Pacific salmon
type: Class
subclass of: Salmonid Type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-11T17:26:55Z
description: There are five species of Pacific salmon, which occur in the North Pacific waters of the United States and Canada -- Chinook, Chum, Coho, Pink, and Sockeye. All five species are anadromous, meaning that they spawn in freshwater, migrate to the ocean to forage and mature, and return to freshwater to spawn and begin the cycle again.

Axiom
annotated source: Pacific salmon
annotated property: description
annotated target: There are five species of Pacific salmon, which occur in the North Pacific waters of the United States and Canada -- Chinook, Chum, Coho, Pink, and Sockeye. All five species are anadromous, meaning that they spawn in freshwater, migrate to the ocean to forage and mature, and return to freshwater to spawn and begin the cycle again.
has db xref: Schiewe, MH (2013) Salmon. Encyclopedia of Biodiversity (Second Edition). pg. 522-531. https://doi.org/10.1016/B978-0-12-384719-5.00293-8
has db xref: https://www.fisheries.noaa.gov/species/pacific-salmon-and-steelhead#overview, accessed 2021-06-01

Region or location code
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-12T17:37:57Z
definition: An identifier which represents a region or location in and is used in place of the full name.

Cutthroat trout
type: Class
subclass of: Pacific trout and char
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T21:45:56Z
alternative label: Oncorhynchus clarkii O. clarkii

Axiom
annotated source: Cutthroat trout
annotated property: altLabel
annotated target: Oncorhynchus clarkii O. clarkii
source: https://en.wikipedia.org/wiki/Cutthroat_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q2717060, accessed 2021-06-15

Atlantic salmon
type: Class
subclass of: Salmonid Type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T23:51:30Z
description: Atlantic salmon are the only anadromous salmonid native to the Atlantic coast of North America.
alternative label: Salmo salar S. salar

Axiom
annotated source: Atlantic salmon
annotated property: description
annotated target: Atlantic salmon are the only anadromous salmonid native to the Atlantic coast of North America.
source: Schiewe, MH (2013) Salmon. Encyclopedia of Biodiversity (Second Edition). pg. 522-531. https://doi.org/10.1016/B978-0-12-384719-5.00293-8

Axiom
annotated source: Atlantic salmon
annotated property: altLabel
annotated target: Salmo salar S. salar
source: https://en.wikipedia.org/wiki/Atlantic_salmon, accessed 2021-06-01 https://www.wikidata.org/wiki/Q188879, accessed 2021-06-01

Oncorhynchus spp.
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T23:57:17Z
description: Oncorhynchus is a genus of fish in the family Salmonidae; it contains the Pacific salmon and Pacific trout. The name of the genus is derived from the Greek ὄγκος (ónkos, “lump, bend”) + ῥύγχος (rhúnkhos, “snout”), in reference to the hooked jaws of males in the mating season (the "kype").
has db xref: NCBI:txid8016

Axiom
annotated source: Oncorhynchus spp.
annotated property: description
annotated target: Oncorhynchus is a genus of fish in the family Salmonidae; it contains the Pacific salmon and Pacific trout. The name of the genus is derived from the Greek ὄγκος (ónkos, “lump, bend”) + ῥύγχος (rhúnkhos, “snout”), in reference to the hooked jaws of males in the mating season (the "kype").
source: https://en.wikipedia.org/wiki/Oncorhynchus, accessed 2021-06-15 https://www.wikidata.org/wiki/Q133325, accessed 2021-06-15

Salmo spp.
type: Class
subclass of: Atlantic salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T00:02:38Z
description: Salmo is a genus of fish in the salmon family Salmonidae that includes the European species of salmon and trout, among them the familiar Atlantic salmon Salmo salar and the brown trout Salmo trutta.
has db xref: NCBI:txid8028

Axiom
annotated source: Salmo spp.
annotated property: description
annotated target: Salmo is a genus of fish in the salmon family Salmonidae that includes the European species of salmon and trout, among them the familiar Atlantic salmon Salmo salar and the brown trout Salmo trutta.
source: https://en.wikipedia.org/wiki/Salmo, accessed 2021-06-15 https://www.wikidata.org/wiki/Q310436, accessed 2021-06-15

Salmo salar
type: Class
subclass of: Salmo spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T00:02:46Z
description: Salmo salar is the only species of Atlantic salmon. Physical Description: Atlantic salmon are the largest species in their genus, Salmo. After two years at sea, the fish average 71 to 76 cm (28 to 30 in) in length and 3.6 to 5.4 kg (7.9 to 11.9 lb) in weight. The colouration of young Atlantic salmon does not resemble the adult stage. While they live in fresh water, they have blue and red spots. At maturity, they take on a silver-blue sheen. The easiest way of identifying them as an adult is by the black spots predominantly above the lateral line, though the caudal fin is usually unspotted. When they reproduce, males take on a slight green or red colouration. The salmon has a fusiform body, and well-developed teeth. All fins, except the adipose fin, are bordered with black.
has db xref: NCBI:txid8030 ITIS: 161996 (https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161996#null) GBIF: 7595433 (https://www.gbif.org/species/7595433) EOL: 46563143 (https://eol.org/pages/46563143) COL: 6XCXT (https://www.catalogueoflife.org/data/taxon/6XCXT) Wikidata: Q188879 (https://www.wikidata.org/wiki/Q188879)
alternative label: S. salar
definition: The class which contains all instances of Salmo salar.

Axiom
annotated source: Salmo salar
annotated property: description
annotated target: Salmo salar is the only species of Atlantic salmon. Physical Description: Atlantic salmon are the largest species in their genus, Salmo. After two years at sea, the fish average 71 to 76 cm (28 to 30 in) in length and 3.6 to 5.4 kg (7.9 to 11.9 lb) in weight. The colouration of young Atlantic salmon does not resemble the adult stage. While they live in fresh water, they have blue and red spots. At maturity, they take on a silver-blue sheen. The easiest way of identifying them as an adult is by the black spots predominantly above the lateral line, though the caudal fin is usually unspotted. When they reproduce, males take on a slight green or red colouration. The salmon has a fusiform body, and well-developed teeth. All fins, except the adipose fin, are bordered with black.
has db xref: https://en.wikipedia.org/wiki/Atlantic_salmon, accessed 2021-06-15 https://www.wikidata.org/wiki/Q188879, accessed 2021-06-15

Oncorhynchus mykiss
type: Class
subclass of: Oncorhynchus spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T00:06:44Z
description: Oncorhynchus mykiss (i.e. rainbow trout) is a species of Pacific trout. Physical Description: Resident freshwater rainbow trout adults average between 1 and 5 lb (0.5 and 2.3 kg) in riverine environments, while lake-dwelling and anadromous forms may reach 20 lb (9 kg). Coloration varies widely between regions and subspecies. Adult freshwater forms are generally blue-green or olive green with heavy black spotting over the length of the body. Adult fish have a broad reddish stripe along the lateral line, from gills to the tail, which is most pronounced in breeding males. The caudal fin is squarish and only mildly forked. Lake-dwelling and anadromous forms are usually more silvery in color with the reddish stripe almost completely gone. Juvenile rainbow trout display parr marks (dark vertical bars) typical of most salmonid juveniles. In some redband and golden trout forms parr marks are typically retained into adulthood. Some coastal rainbow trout (O. m. irideus) and Columbia River redband trout (O. m. gairdneri) populations and cutbow hybrids may also display reddish or pink throat markings similar to cutthroat trout. In many regions, hatchery-bred trout can be distinguished from native trout via fin clips. Fin clipping the adipose fin is a management tool used to identify hatchery-reared fish. Range: The native range of Oncorhynchus mykiss is in the coastal waters and tributary streams of the Pacific basin, from the Kamchatka Peninsula in Russia, east along the Aleutian Islands, throughout southwest Alaska, the Pacific coast of British Columbia and southeast Alaska, and south along the west coast of the U.S. to northern Mexico. It is claimed that the Mexican forms of Oncorhynchus mykiss represent the southernmost native range of any trout or salmon (Salmonidae), though the Formosan landlocked salmon (O. masou formosanus) in Asia inhabits a similar latitude. The range of coastal rainbow trout (O. m. irideus) extends north from the Pacific basin into tributaries of the…
has db xref: ITIS: 161989 (https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161989#null) GBIF: 5204019 (https://www.gbif.org/species/5204019) EOL: 46563138 (https://eol.org/pages/46563138, NOTE: refers to 'rainbow trout') COL: 49JFF (https://www.catalogueoflife.org/data/taxon/49JFF) Wikidata: Q64437771 (https://www.wikidata.org/wiki/Q64437771)
has db xref: NCBI:txid8022 ITIS: 161989 (https://itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161989#null) GBIF: 5204019 (https://www.gbif.org/species/5204019) EOL: 46563138 (https://eol.org/pages/46563138) COL: 49JFF (https://www.catalogueoflife.org/data/taxon/49JFF) Wikidata: Q187986 (https://www.wikidata.org/wiki/Q187986)
alternative label: O. mykiss
definition: The class which contains all instances of Oncorhynchus mykiss.

Axiom
annotated source: Oncorhynchus mykiss
annotated property: description
annotated target: Oncorhynchus mykiss (i.e. rainbow trout) is a species of Pacific trout. Physical Description: Resident freshwater rainbow trout adults average between 1 and 5 lb (0.5 and 2.3 kg) in riverine environments, while lake-dwelling and anadromous forms may reach 20 lb (9 kg). Coloration varies widely between regions and subspecies. Adult freshwater forms are generally blue-green or olive green with heavy black spotting over the length of the body. Adult fish have a broad reddish stripe along the lateral line, from gills to the tail, which is most pronounced in breeding males. The caudal fin is squarish and only mildly forked. Lake-dwelling and anadromous forms are usually more silvery in color with the reddish stripe almost completely gone. Juvenile rainbow trout display parr marks (dark vertical bars) typical of most salmonid juveniles. In some redband and golden trout forms parr marks are typically retained into adulthood. Some coastal rainbow trout (O. m. irideus) and Columbia River redband trout (O. m. gairdneri) populations and cutbow hybrids may also display reddish or pink throat markings similar to cutthroat trout. In many regions, hatchery-bred trout can be distinguished from native trout via fin clips. Fin clipping the adipose fin is a management tool used to identify hatchery-reared fish. Range: The native range of Oncorhynchus mykiss is in the coastal waters and tributary streams of the Pacific basin, from the Kamchatka Peninsula in Russia, east along the Aleutian Islands, throughout southwest Alaska, the Pacific coast of British Columbia and southeast Alaska, and south along the west coast of the U.S. to northern Mexico. It is claimed that the Mexican forms of Oncorhynchus mykiss represent the southernmost native range of any trout or salmon (Salmonidae), though the Formosan landlocked salmon (O. masou formosanus) in Asia inhabits a similar latitude. The range of coastal rainbow trout (O. m. irideus) extends north from the Pacific basin into tributaries of the…
has db xref: https://en.wikipedia.org/wiki/Rainbow_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q187986, accessed 2021-06-15

Axiom
annotated source: Oncorhynchus mykiss
annotated property: seeAlso
annotated target: Steelhead trout
comment: Chose not to assert owl:equivalentClass here, because all Steelhead trout are Oncorhynchus mykiss, but not all Oncorhynchus mykiss are considered Steelhead trout.

Axiom
annotated source: Oncorhynchus mykiss
annotated property: seeAlso
annotated target: Rainbow trout
comment: Chose not to assert owl:equivalentClass here, because all Rainbow trout are Oncorhynchus mykiss, but not all Oncorhynchus mykiss are considered Rainbow trout.

Salvelinus spp.
type: Class
subclass of: Salmonid Type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T00:07:24Z
description: Salvelinus is a genus of salmonid fish often called char or charr; some species are called "trout". Salvelinus is a member of the subfamily Salmoninae within the family Salmonidae.

Axiom
annotated source: Salvelinus spp.
annotated property: description
annotated target: Salvelinus is a genus of salmonid fish often called char or charr; some species are called "trout". Salvelinus is a member of the subfamily Salmoninae within the family Salmonidae.
source: https://en.wikipedia.org/wiki/Salvelinus, accessed 2021-06-15 https://www.wikidata.org/wiki/Q548682, accessed 2021-06-15

Salvelinus malma
type: Class
subclass of: Salvelinus spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T00:07:31Z
description: Salvelinus malma (i.e. the dolly varden trout) is a species of Pacific trout, belonging to the genus Salvelinus of true chars. Physical Description: The back and sides are olive green or muddy gray, shading to white on the belly. The body has scattered pale yellow or pinkish-yellow spots. There are no black spots or wavy lines on the body or fins. Small red spots are present on the lower sides. These are frequently indistinct. The fins are plain and unmarked except for a few light spots on the base of the caudal fin rays. S. malma is extremely similar in appearance to the bull trout (S. confluentus) and Arctic char (S. alpinus), so much so that they are sometimes referred to as "native char" without a distinction. Range: The Dolly Varden trout is found in coastal waters of the North Pacific from Puget Sound north along the British Columbia Coast to the Alaska Peninsula and into the eastern Aleutian Islands, along the Bering Sea and the Arctic Sea to the Mackenzie River. The range in Asia extends south through the Kamchatka Peninsula into northern Japan.
has db xref: NCBI:txid8039 ITIS: 162000 (https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=162000#null) GBIF: 4284020 (https://www.gbif.org/species/4284020) EOL: 225241 (https://eol.org/pages/225241) COL: 79FQR (https://www.catalogueoflife.org/data/taxon/79FQR) Wikidata: Q327067 (https://www.wikidata.org/wiki/Q327067)
alternative label: S. malma
definition: The class which contains all instances of Salvelinus malma.

Axiom
annotated source: Salvelinus malma
annotated property: description
annotated target: Salvelinus malma (i.e. the dolly varden trout) is a species of Pacific trout, belonging to the genus Salvelinus of true chars. Physical Description: The back and sides are olive green or muddy gray, shading to white on the belly. The body has scattered pale yellow or pinkish-yellow spots. There are no black spots or wavy lines on the body or fins. Small red spots are present on the lower sides. These are frequently indistinct. The fins are plain and unmarked except for a few light spots on the base of the caudal fin rays. S. malma is extremely similar in appearance to the bull trout (S. confluentus) and Arctic char (S. alpinus), so much so that they are sometimes referred to as "native char" without a distinction. Range: The Dolly Varden trout is found in coastal waters of the North Pacific from Puget Sound north along the British Columbia Coast to the Alaska Peninsula and into the eastern Aleutian Islands, along the Bering Sea and the Arctic Sea to the Mackenzie River. The range in Asia extends south through the Kamchatka Peninsula into northern Japan.
has db xref: https://en.wikipedia.org/wiki/Dolly_Varden_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q327067, accessed 2021-06-15

Oncorhynchus clarkii
type: Class
subclass of: Oncorhynchus spp.
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T00:08:33Z
description: Oncorhynchus clarkii (i.e. cutthroat trout) is a species of Pacific trout. Physical Description: Throughout their native and introduced ranges, cutthroat trout vary widely in size, coloration and habitat selection. Their coloration can range from golden to gray to green on the back. Cutthroat trout can generally be distinguished from rainbow trout by the presence of basibranchial teeth at the base of tongue and a maxillary that extends beyond the posterior edge of the eye. Depending on subspecies, strain and habitat, most have distinctive red, pink, or orange linear marks along the underside of their mandibles in the lower folds of the gill plates. At maturity, different populations and subspecies of cutthroat trout can range from 6 to 40 inches (15 to 102 cm) in length, depending on habitat and food availability. Sea-run forms of coastal cutthroat trout average 2 to 5 pounds (0.9 to 2.3 kg). The length and weights of mature inland forms vary widely depending on their particular environment and availability of food. Stream-resident fish are much smaller, 0.4 to 3.2 ounces (11 to 91 g), while lacustrine populations have attained weights ranging from 12 to 17 lb (5.4 to 7.7 kg) in ideal conditions. The largest cutthroat trout subspecies is the Lahontan cutthroat trout (O. c. henshawi). These fish average 8 to 9 in (20 to 23 cm) in small streams and 8 to 22 in (20 to 56 cm) in larger rivers and lakes. In ideal environments, the Lahontan cutthroat trout attains typical weights of 0.25 to 8 lb (0.11 to 3.63 kg). The world record cutthroat trout is a Lahontan at 39 in (99 cm) and 41 lb (19 kg). Range: Cutthroat trout are native to western North America and have evolved through geographic isolation into 14 subspecies, each native to a different major drainage basin. Native cutthroat trout species are found along the Pacific Northwest coast from Alaska through British Columbia into northern California, in the Cascade Range, the Great Basin and throughout the Rocky Mountains…
has db xref: NCBI:txid30962 ITIS: 161983 (https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161983#null) GBIF: 5711980 (https://www.gbif.org/species/5711980) EOL: 212910 (https://eol.org/pages/212910) COL: 6SN65 (https://www.catalogueoflife.org/data/taxon/6SN65) Wikidata: Q2717060 (https://www.wikidata.org/wiki/Q2717060)
alternative label: O. clarkii
definition: The class which contains all instances of Oncorhynchus clarkii.

Axiom
annotated source: Oncorhynchus clarkii
annotated property: description
annotated target: Oncorhynchus clarkii (i.e. cutthroat trout) is a species of Pacific trout. Physical Description: Throughout their native and introduced ranges, cutthroat trout vary widely in size, coloration and habitat selection. Their coloration can range from golden to gray to green on the back. Cutthroat trout can generally be distinguished from rainbow trout by the presence of basibranchial teeth at the base of tongue and a maxillary that extends beyond the posterior edge of the eye. Depending on subspecies, strain and habitat, most have distinctive red, pink, or orange linear marks along the underside of their mandibles in the lower folds of the gill plates. At maturity, different populations and subspecies of cutthroat trout can range from 6 to 40 inches (15 to 102 cm) in length, depending on habitat and food availability. Sea-run forms of coastal cutthroat trout average 2 to 5 pounds (0.9 to 2.3 kg). The length and weights of mature inland forms vary widely depending on their particular environment and availability of food. Stream-resident fish are much smaller, 0.4 to 3.2 ounces (11 to 91 g), while lacustrine populations have attained weights ranging from 12 to 17 lb (5.4 to 7.7 kg) in ideal conditions. The largest cutthroat trout subspecies is the Lahontan cutthroat trout (O. c. henshawi). These fish average 8 to 9 in (20 to 23 cm) in small streams and 8 to 22 in (20 to 56 cm) in larger rivers and lakes. In ideal environments, the Lahontan cutthroat trout attains typical weights of 0.25 to 8 lb (0.11 to 3.63 kg). The world record cutthroat trout is a Lahontan at 39 in (99 cm) and 41 lb (19 kg). Range: Cutthroat trout are native to western North America and have evolved through geographic isolation into 14 subspecies, each native to a different major drainage basin. Native cutthroat trout species are found along the Pacific Northwest coast from Alaska through British Columbia into northern California, in the Cascade Range, the Great Basin and throughout the Rocky Mountains…
comment: https://en.wikipedia.org/wiki/Cutthroat_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q2717060, accessed 2021-06-15

Reproductive strategy
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:04:09Z
comment: A general category for gathering traits (morphological, behavioral, and otherwise) that have some evolutionary basis for achieving reproductive success.

Migratory pattern
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:10:50Z
comment: A broad category that may be useful for classifying fish based on patterns in migratory trajectories.

Smolt abundance
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T22:27:09Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.

Egg abundance
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T22:28:19Z
comment: An Essential Salmon Variable (ESV) from the working list being developed by Graeme Diack et al. at the Atlantic Salmon Trust.

Precipitation volume
type: Class
subclass of: Precipitation measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-04T21:13:21Z
definition: Volume of precipitation, which is any product of the condensation of atmospheric water vapor that falls under gravity.

Axiom
annotated source: Precipitation volume
annotated property: definition
annotated target: Volume of precipitation, which is any product of the condensation of atmospheric water vapor that falls under gravity.
source: ECSO_00001237

Species diversity
type: Class
subclass of: Quality of an ecological community
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-04T22:00:50Z
definition: The number of different species that are represented in a given community, weighted by their abundance. Community species diversity can be calculated in different ways, but consists of two components: species richness and species evenness.

Axiom
annotated source: Species diversity
annotated property: definition
annotated target: The number of different species that are represented in a given community, weighted by their abundance. Community species diversity can be calculated in different ways, but consists of two components: species richness and species evenness.
source: PCO_0000019

Alpha diversity
type: Class
subclass of: Species diversity
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-04T22:00:56Z
alternative label: α-diversity
definition: A community species diversity that is the mean species diversity at a site or within a specific habitat.

Axiom
annotated source: Alpha diversity
annotated property: definition
annotated target: A community species diversity that is the mean species diversity at a site or within a specific habitat.
source: PCO_0000074

Beta diversity
type: Class
subclass of: Species diversity
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-04T22:00:59Z
alternative label: β-diversity
definition: A community species diversity that is the ratio between regional and local species diversity.

Axiom
annotated source: Beta diversity
annotated property: definition
annotated target: A community species diversity that is the ratio between regional and local species diversity.
source: PCO_0000075

Gamma diversity
type: Class
subclass of: Species diversity
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-04T22:01:04Z
alternative label: γ-diversity
definition: A community species diversity that is the total species diversity in a landscape. The area or landscape of interest may be of very different sizes in different situations, but it should encompass multiple sites or habitats as measured by alpha diversity.

Axiom
annotated source: Gamma diversity
annotated property: definition
annotated target: A community species diversity that is the total species diversity in a landscape. The area or landscape of interest may be of very different sizes in different situations, but it should encompass multiple sites or habitats as measured by alpha diversity.
source: PCO_0000076

Species evenness
type: Class
subclass of: Quality of an ecological community
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-04T22:05:10Z
definition: A quality of an ecological community that reflects how close in abundance all species in a community are.

Axiom
annotated source: Species evenness
annotated property: definition
annotated target: A quality of an ecological community that reflects how close in abundance all species in a community are.
source: PCO_0000023

Species richness
type: Class
subclass of: Quality of an ecological community
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-04T22:06:09Z
definition: The number of different species represented in an ecological community.

Axiom
annotated source: Species richness
annotated property: definition
annotated target: The number of different species represented in an ecological community.
source: PCO_0000010

Fish length determination method
type: Class
subclass of: Fish measurement method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T20:43:46Z

Fork length measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T20:44:42Z
description: The fork length measurement method is commonly used in fish species that have forked caudal fins -- where the dorsal and ventral rays are longer than median rays. Longer rays are often damaged or eroded by contact with rocks, debris, or hatchery walls.
definition: A fish measurement method in which the length from the most anterior part of a fish to the tip of the median caudal fin rays (i.e. fork) is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the most anterior part to the tip of the median caudal fin rays (i.e. fork). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the most anterior part to the tip of the median caudal fin rays (i.e. fork). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.

Axiom
annotated source: Fork length measurement method
annotated property: description
annotated target: The fork length measurement method is commonly used in fish species that have forked caudal fins -- where the dorsal and ventral rays are longer than median rays. Longer rays are often damaged or eroded by contact with rocks, debris, or hatchery walls.
source: https://www.monitoringresources.org/Document/Method/Details/4041, accessed 2021-06-14

Axiom
annotated source: Fork length measurement method
annotated property: definition
annotated target: A fish measurement method in which the length from the most anterior part of a fish to the tip of the median caudal fin rays (i.e. fork) is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the most anterior part to the tip of the median caudal fin rays (i.e. fork). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the most anterior part to the tip of the median caudal fin rays (i.e. fork). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.
source: https://www.monitoringresources.org/Document/Method/Details/4041, accessed 2021-06-14

Mid-orbit to fork of tail measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T20:58:33Z
definition: A fish measurement method in which the length from the middle of the orbit to the tip of the median caudal fin rays is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the middle of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the middle of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.

Axiom
annotated source: Mid-orbit to fork of tail measurement method
annotated property: definition
annotated target: A fish measurement method in which the length from the middle of the orbit to the tip of the median caudal fin rays is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the middle of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the middle of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.
has db xref: https://www.monitoringresources.org/Document/Method/Details/1549, accessed 2021-06-14 https://www.monitoringresources.org/Document/Method/Details/4041, accessed 2021-06-14

Mid-orbit to hypural plate measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T21:08:39Z
description: Measurements of specific parts of a fish are sometimes necessary when intact fish are not available. For instance, spawning or dead salmon often have eroded tails (from redd excavation) or enlarged or damaged jaws. When researchers want to compare fish lengths of male spawners versus female spawners or hatchery spawned females versus carcasses, it is a good idea to use this type of length measurement to remove the bias of the eroded tails on female spawners. So length measurements are made from specific parts of the body that are intact, such as the orbit and the hypural plate. The hypural plate is comprised of modified vertebrae that support the rays of the caudal fin and originate from the posterior end of the vertebral column. This measurement is also commonly referred to as MEPS, or mid-eye to posterior scale, noting that researchers typically take the measurement to an external feature when the hypural plate is not visible.
definition: A fish measurement method in which the length from the middle of the orbit (i.e. eye) to the hypural plate is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the middle of the orbit (i.e. eye) to the hypural plate. (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the middle of the orbit (i.e. eye) to the hypural plate. It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth. In the case that hypural plate is not visible, the measurement may be made to some external feature (e.g. the position of the last lateral line scale; end of the fleshy caudal peduncle; midline of a crease that forms when the tail is bent sharply). It is important to note this adjustment in measurement protocol.

Axiom
annotated source: Mid-orbit to hypural plate measurement method
annotated property: description
annotated target: Measurements of specific parts of a fish are sometimes necessary when intact fish are not available. For instance, spawning or dead salmon often have eroded tails (from redd excavation) or enlarged or damaged jaws. When researchers want to compare fish lengths of male spawners versus female spawners or hatchery spawned females versus carcasses, it is a good idea to use this type of length measurement to remove the bias of the eroded tails on female spawners. So length measurements are made from specific parts of the body that are intact, such as the orbit and the hypural plate. The hypural plate is comprised of modified vertebrae that support the rays of the caudal fin and originate from the posterior end of the vertebral column. This measurement is also commonly referred to as MEPS, or mid-eye to posterior scale, noting that researchers typically take the measurement to an external feature when the hypural plate is not visible.
source: https://www.monitoringresources.org/Document/Method/Details/1549, accessed 2021-06-14

Axiom
annotated source: Mid-orbit to hypural plate measurement method
annotated property: definition
annotated target: A fish measurement method in which the length from the middle of the orbit (i.e. eye) to the hypural plate is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the middle of the orbit (i.e. eye) to the hypural plate. (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the middle of the orbit (i.e. eye) to the hypural plate. It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth. In the case that hypural plate is not visible, the measurement may be made to some external feature (e.g. the position of the last lateral line scale; end of the fleshy caudal peduncle; midline of a crease that forms when the tail is bent sharply). It is important to note this adjustment in measurement protocol.
source: https://www.monitoringresources.org/Document/Method/Details/1549, accessed 2021-06-14

Mid-orbit to posterior insertion of anal fin measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T21:17:24Z
definition: A fish measurement method in which the length from the middle of the orbit (i.e. eye) to the the posterior-most point where the fin connects with the body is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the middle of the orbit (i.e. eye) to the posterior-most point where the fin connects with the body. (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the middle of the orbit (i.e. eye) to the posterior-most point where the fin connects with the body. It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.

Axiom
annotated source: Mid-orbit to posterior insertion of anal fin measurement method
annotated property: definition
annotated target: A fish measurement method in which the length from the middle of the orbit (i.e. eye) to the the posterior-most point where the fin connects with the body is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the middle of the orbit (i.e. eye) to the posterior-most point where the fin connects with the body. (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the middle of the orbit (i.e. eye) to the posterior-most point where the fin connects with the body. It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.
has db xref: https://www.monitoringresources.org/Document/Method/Details/1549, accessed 2021-06-14 https://www.seagrant.wisc.edu/our-work/focus-areas/fish-and-fisheries/fish-glossary/, accessed 2021-06-14

Post-orbit to fork of tail measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T21:30:14Z
definition: A fish measurement method in which the length from the hind margin of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork) is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from hind margin of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the hind margin of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.

Axiom
annotated source: Post-orbit to fork of tail measurement method
annotated property: definition
annotated target: A fish measurement method in which the length from the hind margin of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork) is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from hind margin of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the hind margin of the orbit (i.e. eye) to the tip of the median caudal fin rays (i.e. fork). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.
has db xref: https://www.monitoringresources.org/Document/Method/Details/1548, accessed 2021-06-14 https://www.monitoringresources.org/Document/Method/Details/4041, accessed 2021-06-14

Post-orbit to hypural plate measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T21:38:35Z
description: Measurements of specific parts of a fish are sometimes necessary when intact fish are not available. For instance, spawning or dead salmon often have eroded tails (from redd excavation) or enlarged or damaged jaws. When researchers want to compare fish lengths of male spawners versus female spawners or hatchery spawned females versus carcasses, it is a good idea to use this type of length measurement to remove the bias of the eroded tails on female spawners. So length measurements are made from specific parts of the body that are intact, such as the orbit and the hypural plate. The hypural plate is comprised of modified vertebrae that support the rays of the caudal fin and originate from the posterior end of the vertebral column.
definition: A fish measurement method in which the length from the hind margin of the orbit (i.e. eye) to the hypural plate is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from hind margin of the orbit (i.e. eye) to the hypural plate. (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the hind margin of the orbit (i.e. eye) to the hypural plate. It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth. In the case that hypural plate is not visible, the measurement may be made to some external feature (e.g. the position of the last lateral line scale; end of the fleshy caudal peduncle; midline of a crease that forms when the tail is bent sharply). It is important to note this adjustment in measurement protocol.

Axiom
annotated source: Post-orbit to hypural plate measurement method
annotated property: description
annotated target: Measurements of specific parts of a fish are sometimes necessary when intact fish are not available. For instance, spawning or dead salmon often have eroded tails (from redd excavation) or enlarged or damaged jaws. When researchers want to compare fish lengths of male spawners versus female spawners or hatchery spawned females versus carcasses, it is a good idea to use this type of length measurement to remove the bias of the eroded tails on female spawners. So length measurements are made from specific parts of the body that are intact, such as the orbit and the hypural plate. The hypural plate is comprised of modified vertebrae that support the rays of the caudal fin and originate from the posterior end of the vertebral column.
source: https://www.monitoringresources.org/Document/Method/Details/1548, accessed 2021-06-14

Standard length measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T21:45:52Z
definition: A fish measurement method in which the length from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates) is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.

Axiom
annotated source: Standard length measurement method
annotated property: definition
annotated target: A fish measurement method in which the length from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates) is recorded. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates). (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the most anterior tip of the body to the midlateral posterior edge of the hypural plate (in fish with a hypural plate) or to the posterior end of the vertebral column (in fish lacking hypural plates). It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.
has db xref: https://www.fishbase.in/glossary/Glossary.php?q=standard+length, accessed 2021-03-31

Total length measurement method
type: Class
subclass of: Fish length determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T21:49:03Z
definition: A fish measurement method in which the length from the most anterior tip of the body to the tip of the longest caudal fin rays is recorded. Total length can be measured by two conventions -- by leaving the caudal fin spread in a natural position or by compressing the lobes of the caudal fin dorsoventrally. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the most anterior tip of the body to the tip of the longest caudal fin rays. (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the most anterior tip of the body to the tip of the longest caudal fin rays. It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.

Axiom
annotated source: Total length measurement method
annotated property: definition
annotated target: A fish measurement method in which the length from the most anterior tip of the body to the tip of the longest caudal fin rays is recorded. Total length can be measured by two conventions -- by leaving the caudal fin spread in a natural position or by compressing the lobes of the caudal fin dorsoventrally. Two common procedures are: (a) Using a measuring board: A fish is placed on its side on a measuring board with its snout against the rigid headpiece. A measurement is taken from the most anterior tip of the body to the tip of the longest caudal fin rays. (b) Using a tape measure: A fish is placed on its side, either on top of a tape measure or the tape measure is placed just above the dorsal side of the fish to record the measurement from the most anterior tip of the body to the tip of the longest caudal fin rays. It is important to not allow the tape to curve along the contoured side of the fish that is facing up, which can introduce bias into the measurement due to girth.
source: https://www.monitoringresources.org/Document/Method/Details/1551, accessed 2021-06-14

Fish stock type
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T23:05:05Z
definition: Group of individuals of a species which can be regarded as an entity for management or assessment purposes; a separate breeding population of a species; term used to identify a management unit of fishery species. A distinct genetic population, a population defined by movement pattern, part of a population potentially harvestable, or a quantity of fish from a given area. May be a total or a spawning stock.

Axiom
annotated source: Fish stock type
annotated property: definition
annotated target: Group of individuals of a species which can be regarded as an entity for management or assessment purposes; a separate breeding population of a species; term used to identify a management unit of fishery species. A distinct genetic population, a population defined by movement pattern, part of a population potentially harvestable, or a quantity of fish from a given area. May be a total or a spawning stock.
source: https://www.fishbase.se/Glossary/Glossary.php?q=stock&language=english&sc=is, accessed 2021-06-15

Wild stock
type: Class
subclass of: Fish stock type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-14T23:05:21Z
definition: A stock that is sustained by natural spawning and rearing in the natural habitat, regardless of parentage or origin.
related match: PCO_0000001

Axiom
annotated source: Wild stock
annotated property: definition
annotated target: A stock that is sustained by natural spawning and rearing in the natural habitat, regardless of parentage or origin.
source: https://www.fishbase.se/Glossary/Glossary.php?q=wild+stock&language=english&sc=is, accessed 2021-06-15

Fish total age
type: Class
subclass of: Fish age notation type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-15T19:26:05Z
definition: An integer, which represents the sum of freshwater and marine annuli plus one to account for time spent in the gravel before hatching.

Rainbow trout
type: Class
subclass of: Pacific trout and char
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-15T20:05:01Z
alternative label: Oncorhychus mykiss O. mykiss "lake trout" @en "rainbow" @en "silver trout" @en "steelhead" @en "brook trout" @en

Axiom
annotated source: Rainbow trout
annotated property: altLabel
annotated target: Oncorhychus mykiss O. mykiss "lake trout" @en "rainbow" @en "silver trout" @en "steelhead" @en "brook trout" @en
source: https://en.wikipedia.org/wiki/Rainbow_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q187986, accessed 2021-06-15

Oncorhynchus mykiss irideus
type: Class
subclass of: Oncorhynchus mykiss

Parr
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T04:18:20Z
definition: A young salmonid (salmon or trout) with parr-marks before migration to the sea and after dispersal from the redd.

Axiom
annotated source: Parr
annotated property: definition
annotated target: A young salmonid (salmon or trout) with parr-marks before migration to the sea and after dispersal from the redd.
source: http://www.fishbase.us/glossary/Glossary.php?q=parr&language=english&sc=is, accessed 2021-06-15

Coastal cutthroat trout
type: Class
subclass of: Cutthroat trout
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T16:09:57Z
alternative label: Oncorhynchus clarkii clarkii Oncorhynchus c. clarkii O. c. clarkii

Axiom
annotated source: Coastal cutthroat trout
annotated property: altLabel
annotated target: Oncorhynchus clarkii clarkii Oncorhynchus c. clarkii O. c. clarkii
source: https://en.wikipedia.org/wiki/Coastal_cutthroat_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q5138345, accessed 2021-06-15

Oncorhynchus clarkii clarkii
type: Class
subclass of: Oncorhynchus clarkii
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T16:26:35Z
description: Oncorhynchus clarkii clarkii (i.e. coastal cutthroat trout) is a subspecies of Oncorhynchus mykiss and one fo the Pacific trout species. The coastal cutthroat trout occurs in four distinct forms. A semi-anadromous or sea-run form is the most well known. Freshwater forms occur in both large and small rivers and streams and lake environments. The native range of the coastal cutthroat trout extends south from the southern coastline of the Kenai Peninsula in Alaska to the Eel River in Northern California. Coastal cutthroat trout are resident in tributary streams and rivers of the Pacific basin and are rarely found more than 100 miles (160 km) from the ocean. Physical Description: Freshwater forms of the coastal cutthroat trout are generally dark green to greenish-blue on back, olive-green on upper flank, silvery on lower flank and belly. They display more numerous flank spots below lateral line, irregular spots on dorsal, adipose and caudal fins and the anal, pectoral and pelvic fin bases. The gill covers are pinkish. Sea-run forms while in salt water and shortly after returning to fresh water are silvery with a bluish back, yellowish lower flanks and fins, and display sparse spots. Cutthroats usually display distinctive red, pink, or orange linear marks along the undersides of their mandibles in the lower folds of the gill plates. These markings are responsible for the common name "cutthroat" given to the trout by outdoor writer Charles Hallock in an 1884 article in The American Angler., although the red slashes are not unique to the cutthroat trout and some coastal rainbow trout and redband trout also display throat slashes. The sea-run forms of coastal cutthroat average 2 to 5 lb (0.9 to 2.3 kg), while stream-resident forms attain much smaller sizes 0.4 to 3.2 oz (11 to 91 g). Range: The native range of the coastal cutthroat trout extends south from the southern coastline of the Kenai Peninsula in Alaska to the Eel River in Northern California. Coastal cutthroat trou…
has db xref: NCBI:txid69121
alternative label: O. c. clarkii Onchorhynchus c. clarkii sea-run cutthroat trout blueback trout harvest trout
definition: The class which contains all instances of Oncorhynchus clarkii clarkii.

Axiom
annotated source: Oncorhynchus clarkii clarkii
annotated property: description
annotated target: Oncorhynchus clarkii clarkii (i.e. coastal cutthroat trout) is a subspecies of Oncorhynchus mykiss and one fo the Pacific trout species. The coastal cutthroat trout occurs in four distinct forms. A semi-anadromous or sea-run form is the most well known. Freshwater forms occur in both large and small rivers and streams and lake environments. The native range of the coastal cutthroat trout extends south from the southern coastline of the Kenai Peninsula in Alaska to the Eel River in Northern California. Coastal cutthroat trout are resident in tributary streams and rivers of the Pacific basin and are rarely found more than 100 miles (160 km) from the ocean. Physical Description: Freshwater forms of the coastal cutthroat trout are generally dark green to greenish-blue on back, olive-green on upper flank, silvery on lower flank and belly. They display more numerous flank spots below lateral line, irregular spots on dorsal, adipose and caudal fins and the anal, pectoral and pelvic fin bases. The gill covers are pinkish. Sea-run forms while in salt water and shortly after returning to fresh water are silvery with a bluish back, yellowish lower flanks and fins, and display sparse spots. Cutthroats usually display distinctive red, pink, or orange linear marks along the undersides of their mandibles in the lower folds of the gill plates. These markings are responsible for the common name "cutthroat" given to the trout by outdoor writer Charles Hallock in an 1884 article in The American Angler., although the red slashes are not unique to the cutthroat trout and some coastal rainbow trout and redband trout also display throat slashes. The sea-run forms of coastal cutthroat average 2 to 5 lb (0.9 to 2.3 kg), while stream-resident forms attain much smaller sizes 0.4 to 3.2 oz (11 to 91 g). Range: The native range of the coastal cutthroat trout extends south from the southern coastline of the Kenai Peninsula in Alaska to the Eel River in Northern California. Coastal cutthroat trou…
source: https://en.wikipedia.org/wiki/Coastal_cutthroat_trout, accessed 2021-06-18 https://www.wikidata.org/wiki/Q5138345, accessed 2021-06-18

Axiom
annotated source: Oncorhynchus clarkii clarkii
annotated property: altLabel
annotated target: O. c. clarkii Onchorhynchus c. clarkii sea-run cutthroat trout blueback trout harvest trout
source: https://en.wikipedia.org/wiki/Coastal_cutthroat_trout, accessed 2021-06-18 https://www.wikidata.org/wiki/Q5138345, accessed 2021-06-18

Dataset type
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T22:33:55Z
comment: Class intended to facilitate search by "dataset type"

Brood table
type: Class
subclass of: Dataset type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T22:33:58Z
alternative label: run reconstruction
definition: Brood tables, also called run reconstructions, utilize annual estimates of the total run (commercial catch plus escapement), and samples of ages, to estimate the number of recruits per age class. These data are useful for salmon biologists to understand salmon productivity and salmon life histories.

Axiom
annotated source: Brood table
annotated property: definition
annotated target: Brood tables, also called run reconstructions, utilize annual estimates of the total run (commercial catch plus escapement), and samples of ages, to estimate the number of recruits per age class. These data are useful for salmon biologists to understand salmon productivity and salmon life histories.
source: https://nceas.github.io/sasap-training/materials/reproducible_research_in_r_fairbanks/example-brood-table-analysis.html, accessed 2021-06-16

Fish weight measurement type
type: Class
subclass of: Fish measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T22:45:21Z
alternative label: fish weight weight of fish fish mass mass of fish

Wet weight
type: Class
subclass of: Whole fish weight
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T22:53:55Z
definition: The weight of a fish, typically taken when the specimen is still alive or freshly deceased, but before being frozen or further processed.

Axiom
annotated source: Wet weight
annotated property: definition
annotated target: The weight of a fish, typically taken when the specimen is still alive or freshly deceased, but before being frozen or further processed.
source: http://orcid.org/0000-0002-5300-3075

Frozen weight
type: Class
subclass of: Whole fish weight
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T22:54:03Z
definition: The weight of a fish, taken after the specimen has been frozen.

Axiom
annotated source: Frozen weight
annotated property: definition
annotated target: The weight of a fish, taken after the specimen has been frozen.
source: http://orcid.org/0000-0002-5300-3075

Standard weight
type: Class
subclass of: Whole fish weight
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T22:57:49Z
definition: The typical or expected weight at a given total length for a specific species of fish. Most standard weight equations are for freshwater fish species.

Axiom
annotated source: Standard weight
annotated property: definition
annotated target: The typical or expected weight at a given total length for a specific species of fish. Most standard weight equations are for freshwater fish species.
source: https://en.wikipedia.org/wiki/Standard_weight_in_fish, accessed 2021-06-16 https://www.wikidata.org/wiki/Q7598325, accessed 2021-06-16

Age class
type: Class
subclass of: Total age
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:11:34Z
description: For example, salmon of age class 2 include all individuals in a population of interest that are two years old.
definition: A group of individuals of the same species that have the same age.

Total recruit abundance
type: Class
subclass of: Recruit abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:16:10Z
description: Recruits do not include individuals lost to predation.
definition: The number of salmon which survive to reach legal age and/or size for harvest. Recruits include both individuals that are captured by a fishery and individuals that escape the fishery -- total recruitment is calculated as catch plus escapement.

Axiom
annotated source: Total recruit abundance
annotated property: definition
annotated target: The number of salmon which survive to reach legal age and/or size for harvest. Recruits include both individuals that are captured by a fishery and individuals that escape the fishery -- total recruitment is calculated as catch plus escapement.
source: http://orcid.org/0000-0002-5300-3075

Age class 0.x recruits
type: Class
subclass of: European system Age designation recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:30:26Z
definition: Total number of recruits of age class zero.

Age class 1.x recruits
type: Class
subclass of: European system Age designation recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:30:32Z
definition: Total number of recruits of age class one.

Age class 2.x recruits
type: Class
subclass of: European system Age designation recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:30:43Z
definition: Total number of recruits of age class two.

Age class 3.x recruits
type: Class
subclass of: European system Age designation recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:30:49Z
definition: Total number of recruits of age class three.

Age class 4.x recruits
type: Class
subclass of: European system Age designation recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:31:03Z
definition: Total number of recruits of age class four.

Age class 5.x recruits
type: Class
subclass of: European system Age designation recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:31:10Z
definition: Total number of recruits of age class five.

Age class 6.x recruits
type: Class
subclass of: European system Age designation recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T16:31:20Z
definition: Total number of recruits of age class six.

Fish stock code
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-17T17:12:48Z
definition: A numeric or alphanumeric code, which represents a particular salmon stock and may be recorded in place of a formal scientific or vernacular name.

Identifiers and Codes
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-21T20:12:18Z
comment: Identifiers and Codes are differentiated here from their potentially more commonly identifying "labels" that would called "Names", which are typically expressed more in natural language. In some cases, the distinction between a Station "Identifier/Code" and the "Station Name" may be ambiguous, or the same label might apply to both.
see also: ID Identity
definition: A name that identifies (that is, labels the identity of) either a unique object or a unique class of objects, where the "object" of class may be an idea, physical countable object (of class thereof), or physical noncountable substance (or class thereof). The abbreviation ID often refers to identity, identification (the process of identifying), or an identifier (that is, an instance of identification). An identifier may be a word, number, letter, symbol, or any combination of those.

Axiom
annotated source: Identifiers and Codes
annotated property: definition
annotated target: A name that identifies (that is, labels the identity of) either a unique object or a unique class of objects, where the "object" of class may be an idea, physical countable object (of class thereof), or physical noncountable substance (or class thereof). The abbreviation ID often refers to identity, identification (the process of identifying), or an identifier (that is, an instance of identification). An identifier may be a word, number, letter, symbol, or any combination of those.
source: https://en.wikipedia.org/wiki/Identifier, accessed 2021-06-22 https://www.wikidata.org/wiki/Q853614, accessed 2021-06-22

Fish stock name
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-21T20:16:55Z

Geospatial information
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-22T22:50:49Z

Location
type: Class
subclass of: Geospatial information
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-22T22:50:56Z
comment: In geography, location or place are used to denote a region (point, line, or area) on Earth’s surface or elsewhere. The term location generally implies a higher degree of certainty than place, the latter often indicating an entity with an ambiguous boundary, relying more on human or social attributes of place identity and sense of place than on geometry.
comment: [NEEDS ALIGNMENT] http://purl.obolibrary.org/obo/GAZ_00000448
definition: A reference to a position on the Earth, by its name or by its geographical location.

Axiom
annotated source: Location
annotated property: comment
annotated target: In geography, location or place are used to denote a region (point, line, or area) on Earth’s surface or elsewhere. The term location generally implies a higher degree of certainty than place, the latter often indicating an entity with an ambiguous boundary, relying more on human or social attributes of place identity and sense of place than on geometry.
source: https://en.wikipedia.org/wiki/Location

Axiom
annotated source: Location
annotated property: definition
annotated target: A reference to a position on the Earth, by its name or by its geographical location.
comment: http://purl.obolibrary.org/obo/GAZ_00000448 https://www.washoeschools.net/cms/lib/NV01912265/Centricity/Domain/1141/Five%20Themes%20of%20Geo%20packet%202017.pdf, accessed 2021-06-22

Place
type: Class
subclass of: Geospatial information
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-22T22:51:00Z
description: In geography, location or place are used to denote a region (point, line, or area) on Earth’s surface or elsewhere. The term location generally implies a higher degree of certainty than place, the latter often indicating an entity with an ambiguous boundary, relying more on human or social attributes of place identity and sense of place than on geometry.

Axiom
annotated source: Place
annotated property: description
annotated target: In geography, location or place are used to denote a region (point, line, or area) on Earth’s surface or elsewhere. The term location generally implies a higher degree of certainty than place, the latter often indicating an entity with an ambiguous boundary, relying more on human or social attributes of place identity and sense of place than on geometry.
source: https://en.wikipedia.org/wiki/Location

Region
type: Class
subclass of: Geospatial information
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-22T22:51:02Z
description: In geography, regions are areas that are broadly divided by physical characteristics (physical geography), human impact characteristics (human geography), and the interaction of humanity and the environment (environmental geography). Geographic regions and sub-regions are mostly described by their imprecisely defined, and sometimes transitory boundaries, except in human geography, where jurisdiction areas such as national borders are defined in law.
definition: A spatial region whose boundaries are typically defined against some material frame of reference (like the earth).

Axiom
annotated source: Region
annotated property: description
annotated target: In geography, regions are areas that are broadly divided by physical characteristics (physical geography), human impact characteristics (human geography), and the interaction of humanity and the environment (environmental geography). Geographic regions and sub-regions are mostly described by their imprecisely defined, and sometimes transitory boundaries, except in human geography, where jurisdiction areas such as national borders are defined in law.
source: https://en.wikipedia.org/wiki/Region

Axiom
annotated source: Region
annotated property: definition
annotated target: A spatial region whose boundaries are typically defined against some material frame of reference (like the earth).
source: http://semanticscience.org/resource/SIO_000414

Subregion
type: Class
subclass of: Region
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-22T22:51:09Z
comment: A subregion is a part of a larger region or continent and is usually based on location. Cardinal directions, such as south or sou commonly used to define a subregion.

Axiom
annotated source: Subregion
annotated property: comment
annotated target: A subregion is a part of a larger region or continent and is usually based on location. Cardinal directions, such as south or sou commonly used to define a subregion.
source: https://en.wikipedia.org/wiki/Subregion

Gum card number
type: Class
subclass of: Sample code
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T17:34:31Z
description: Gum cards are used to mount and label the identity of sampled fish scales.
definition: A numeric value assigned to a scale gum card.

Axiom
annotated source: Gum card number
annotated property: description
annotated target: Gum cards are used to mount and label the identity of sampled fish scales.
source: http://orcid.org/0000-0002-5300-3075

Axiom
annotated source: Gum card number
annotated property: definition
annotated target: A numeric value assigned to a scale gum card.
source: http://orcid.org/0000-0002-5300-3075

Age error code
type: Class
subclass of: Identifiers and Codes
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T17:53:09Z
definition: A numeric or alphanumeric code which represents potential sources of error in determining the age of a fish specimen.

Axiom
annotated source: Age error code
annotated property: definition
annotated target: A numeric or alphanumeric code which represents potential sources of error in determining the age of a fish specimen.
source: http://orcid.org/0000-0002-5300-3075

Project name
type: Class
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T18:22:30Z
description: The label, acronym, or other preferred way to refer to a Project

Whole fish weight
type: Class
subclass of: Fish weight measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T18:46:24Z

Stomach weight
type: Class
subclass of: Fish weight measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T18:46:59Z

Weight of full stomach
type: Class
subclass of: Stomach weight
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T18:47:09Z
definition: The weight of a specimen's stomach, taken after the stomach has been dissected from the fish but before being emptied of its contents.

Axiom
annotated source: Weight of full stomach
annotated property: definition
annotated target: The weight of a specimen's stomach, taken after the stomach has been dissected from the fish but before being emptied of its contents.
source: http://orcid.org/0000-0002-5300-3075

Weight of empty stomach
type: Class
subclass of: Stomach weight
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T18:47:15Z
definition: The weight of a specimen's stomach, taken after the stomach has been dissected from the fish and emptied of its contents.

Axiom
annotated source: Weight of empty stomach
annotated property: definition
annotated target: The weight of a specimen's stomach, taken after the stomach has been dissected from the fish and emptied of its contents.
source: http://orcid.org/0000-0002-5300-3075

Fish parasite measurement type
type: Class
subclass of: Fish measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T18:53:19Z

Sea lice count
type: Class
subclass of: Fish parasite measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-23T18:54:56Z
description: A sea louse (plural sea lice, not to be confused with sea fleas), is a member of the Caligidae family of copepods (small crustaceans) within the order Siphonostomatoida. The roughly 559 species in 37 genera include around 162 Lepeophtheirus and 268 Caligus species. Sea lice are marine ectoparasites (external parasites) that feed on the mucus, epidermal tissue, and blood of host marine fish.
definition: The number of sea lice counted on an individual fish.

Axiom
annotated source: Sea lice count
annotated property: description
annotated target: A sea louse (plural sea lice, not to be confused with sea fleas), is a member of the Caligidae family of copepods (small crustaceans) within the order Siphonostomatoida. The roughly 559 species in 37 genera include around 162 Lepeophtheirus and 268 Caligus species. Sea lice are marine ectoparasites (external parasites) that feed on the mucus, epidermal tissue, and blood of host marine fish.
source: https://en.wikipedia.org/wiki/Sea_louse, accessed 2021-06-23 https://www.wikidata.org/wiki/Q3808922, accessed 2021-06-23

Axiom
annotated source: Sea lice count
annotated property: definition
annotated target: The number of sea lice counted on an individual fish.
source: http://orcid.org/0000-0002-5300-3075

Age class 0.1 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:43:45Z
definition: Total number of recruits of age class 0.1.

Age class 0.2 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:44:37Z
definition: Total number of recruits of age class 0.2.

Age class 0.3 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:44:58Z
definition: Total number of recruits of age class 0.3.

Age class 0.4 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:45:17Z
definition: Total number of recruits of age class 0.4.

Age class 0.5 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:45:39Z
definition: Total number of recruits of age class 0.5.

Age class 1.1 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:46:02Z
definition: Total number of recruits of age class 1.1.

Age class 1.2 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:46:25Z
definition: Total number of recruits of age class 1.2.

Age class 1.3 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:46:55Z
definition: Total number of recruits of age class 1.3.

Age class 1.4 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:47:12Z
definition: Total number of recruits of age class 1.4.

Age class 1.5 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:47:26Z
definition: Total number of recruits of age class 1.5.

Age class 1.6 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:47:36Z
definition: Total number of recruits of age class 1.6.

Age class 1.7 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:47:48Z
definition: Total number of recruits of age class 1.7.

Age class 1.8 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:48:00Z
definition: Total number of recruits of age class 1.8.

Age class 1.9 recruits
type: Class
subclass of: Age class 1.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:48:13Z
definition: Total number of recruits of age class 1.9.

Age class 0.6 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:48:30Z
definition: Total number of recruits of age class 0.6.

Age class 0.7 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:48:49Z
definition: Total number of recruits of age class 0.7.

Age class 0.8 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:49:01Z
definition: Total number of recruits of age class 0.8.

Age class 0.9 recruits
type: Class
subclass of: Age class 0.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:49:12Z
definition: Total number of recruits of age class 0.9.

Age class 2.1 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:49:46Z
definition: Total number of recruits of age class 2.1.

Age class 2.2 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:49:54Z
definition: Total number of recruits of age class 2.2.

Age class 2.3 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:50:00Z
definition: Total number of recruits of age class 2.3.

Age class 2.4 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:50:08Z
definition: Total number of recruits of age class 2.4.

Age class 2.5 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:50:22Z
definition: Total number of recruits of age class 2.5.

Age class 2.6 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:50:27Z
definition: Total number of recruits of age class 2.6.

Age class 2.7 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:50:32Z
definition: Total number of recruits of age class 2.7.

Age class 2.8 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:50:39Z
definition: Total number of recruits of age class 2.8.

Age class 2.9 recruits
type: Class
subclass of: Age class 2.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:50:43Z
definition: Total number of recruits of age class 2.9.

Age class 3.1 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:51:54Z
definition: Total number of recruits of age class 3.1.

Age class 3.2 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:05Z
definition: Total number of recruits of age class 3.2.

Age class 3.3 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:09Z
definition: Total number of recruits of age class 3.3.

Age class 3.4 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:16Z
definition: Total number of recruits of age class 3.4.

Age class 3.5 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:22Z
definition: Total number of recruits of age class 3.5.

Age class 3.6 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:26Z
definition: Total number of recruits of age class 3.6.

Age class 3.7 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:32Z
definition: Total number of recruits of age class 3.7.

Age class 3.8 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:37Z
definition: Total number of recruits of age class 3.8.

Age class 3.9 recruits
type: Class
subclass of: Age class 3.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:52:44Z
definition: Total number of recruits of age class 3.9.

Age class 4.1 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:02Z
definition: Total number of recruits of age class 4.1.

Age class 4.2 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:08Z
definition: Total number of recruits of age class 4.2.

Age class 4.3 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:15Z
definition: Total number of recruits of age class 4.3.

Age class 4.4 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:20Z
definition: Total number of recruits of age class 4.4.

Age class 4.5 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:24Z
definition: Total number of recruits of age class 4.5.

Age class 4.6 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:29Z
definition: Total number of recruits of age class 4.6.

Age class 4.7 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:35Z
definition: Total number of recruits of age class 4.7.

Age class 4.8 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:40Z
definition: Total number of recruits of age class 4.8.

Age class 4.9 recruits
type: Class
subclass of: Age class 4.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:54:45Z
definition: Total number of recruits of age class 4.9.

Age class 5.1 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:55:44Z
definition: Total number of recruits of age class 5.1.

Age class 5.2 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:55:50Z
definition: Total number of recruits of age class 5.2.

Age class 5.3 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:55:54Z
definition: Total number of recruits of age class 5.3.

Age class 5.4 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:56:01Z
definition: Total number of recruits of age class 5.4.

Age class 5.6 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:56:07Z
definition: Total number of recruits of age class 5.6.

Age class 5.7 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:56:12Z
definition: Total number of recruits of age class 5.7.

Age class 5.8 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:56:21Z
definition: Total number of recruits of age class 5.8.

Age class 5.9 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:56:26Z
definition: Total number of recruits of age class 5.9.

Age class 5.5 recruits
type: Class
subclass of: Age class 5.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:57:19Z
definition: Total number of recruits of age class 5.5.

Age class 6.1 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:57:39Z
definition: Total number of recruits of age class 6.1.

Age class 6.2 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:57:46Z
definition: Total number of recruits of age class 6.2.

Age class 6.3 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:57:51Z
definition: Total number of recruits of age class 6.3.

Age class 6.4 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:57:59Z
definition: Total number of recruits of age class 6.4.

Age class 6.5 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:58:05Z
definition: Total number of recruits of age class 6.5.

Age class 6.6 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:58:10Z
definition: Total number of recruits of age class 6.6.

Age class 6.7 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:58:16Z
definition: Total number of recruits of age class 6.7.

Age class 6.8 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:58:23Z
definition: Total number of recruits of age class 6.8.

Age class 6.9 recruits
type: Class
subclass of: Age class 6.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T18:58:29Z
definition: Total number of recruits of age class 6.9.

Age class 7.x recruits
type: Class
subclass of: European system Age designation recruits
identifier: Total number of recruits of age class 7

Age class 8.x recruits
type: Class
subclass of: European system Age designation recruits
description: Total number of recruits of age class 8

Age class 7.1 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:34:44Z
definition: Total number of recruits of age class 7.1.

Age class 7.2 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:34:51Z
definition: Total number of recruits of age class 7.2.

Age class 7.3 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:00Z
definition: Total number of recruits of age class 7.3.

Age class 7.4 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:09Z
definition: Total number of recruits of age class 7.4.

Age class 7.5 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:15Z
definition: Total number of recruits of age class 7.5.

Age class 7.6 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:23Z
definition: Total number of recruits of age class 7.6.

Age class 7.7 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:30Z
definition: Total number of recruits of age class 7.7.

Age class 7.8 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:36Z
definition: Total number of recruits of age class 7.8.

Age class 7.9 recruits
type: Class
subclass of: Age class 7.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:42Z
definition: Total number of recruits of age class 7.9.

Age class 8.1 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:35:56Z
definition: Total number of recruits of age class 8.1.

Age class 8.2 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:04Z
definition: Total number of recruits of age class 8.2.

Age class 8.3 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:09Z
definition: Total number of recruits of age class 8.3.

Age class 8.4 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:14Z
definition: Total number of recruits of age class 8.4.

Age class 8.5 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:20Z
definition: Total number of recruits of age class 8.5.

Age class 8.6 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:25Z
definition: Total number of recruits of age class 8.6.

Age class 8.7 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:34Z
definition: Total number of recruits of age class 8.7.

Age class 8.8 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:40Z
definition: Total number of recruits of age class 8.8.

Age class 8.9 recruits
type: Class
subclass of: Age class 8.x recruits
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-15T19:36:45Z
definition: Total number of recruits of age class 8.9.

Fish weight proxy measurement type
type: Class
subclass of: Proxy measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-16T19:32:02Z

Girth of fish
type: Class
subclass of: Fish weight proxy measurement type
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-16T19:32:26Z
definition: A measurement taken around the thickest portion of the midsection of a fish.

Fish weight determination method
type: Class
subclass of: Fish measurement method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-16T19:37:18Z

Measuring the girth of a fish
type: Class
subclass of: Fish weight determination method
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-16T19:37:41Z
definition: A method which is used to approximate the total weight of a fish and which involves wrapping a cloth tape measure perpendicular to the longitudinal axis of the fish to measure its circumference at the thickest point.

Axiom
annotated source: Measuring the girth of a fish
annotated property: definition
annotated target: A method which is used to approximate the total weight of a fish and which involves wrapping a cloth tape measure perpendicular to the longitudinal axis of the fish to measure its circumference at the thickest point.
has db xref: https://www.adfg.alaska.gov/FedAidPDFs/fds06-70.pdf, accessed 2021-07-16

AWC water body code
type: Class
subclass of: Region or location code
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-19T20:55:57Z
alternative label: Anadromous Waters Catalog water body code State of Alaska's Anadromous Waters Stream Catalog

Axiom
annotated source: AWC water body code
annotated property: altLabel
annotated target: Anadromous Waters Catalog water body code State of Alaska's Anadromous Waters Stream Catalog
source: https://www.adfg.alaska.gov/sf/SARR/AWC/index.cfm

Recruit abundance
type: Class
subclass of: Salmon abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-20T21:55:15Z

Recruits per spawner
type: Class
subclass of: Recruit abundance
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-07-20T21:55:30Z
comment: A count or other estimate of the number of fish returning to a breeding site from a spawning individual.

Subsistence fishery harvest count
type: Class
subclass of: Salmon harvest count
creator: https://orcid.org/0000-0002-0381-3766
date: 2022-06-10T21:46:57Z
comment: Estimates of number of fish caught based on some subsistence harvest

Sport fishery harvest count
type: Class
subclass of: Salmon harvest count
creator: https://orcid.org/0000-0002-0381-3766
date: 2022-06-10T21:46:57Z
comment: Estimates of number of fish caught based on some sport harvest

Jack
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-22T02:55:24Z
description: Jacks are precocial male salmon that have spent one winter less in the ocean than the youngest females of a given species. Because they are younger, jack salmon are smaller than other age classes of conspecifics. Coho jacks return to spawn the same year they smolted and so are particularly small. Jack coloration can differ from that of older adults. Jacks are able to successfully sneak-spawn in spite of efforts by the female and occasionally the other males.

Axiom
annotated source: Jack
annotated property: description
annotated target: Jacks are precocial male salmon that have spent one winter less in the ocean than the youngest females of a given species. Because they are younger, jack salmon are smaller than other age classes of conspecifics. Coho jacks return to spawn the same year they smolted and so are particularly small. Jack coloration can differ from that of older adults. Jacks are able to successfully sneak-spawn in spite of efforts by the female and occasionally the other males.
source: https://www.salmonography.com/Salmonid-Topic/Jack-Salmon/

Grilse
type: Class
subclass of: Life history stage of salmonid fish
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-22T02:58:24Z
description: a young Atlantic salmon returning to its native river to spawn for the first time after one winter at sea

Axiom
annotated source: Grilse
annotated property: description
annotated target: a young Atlantic salmon returning to its native river to spawn for the first time after one winter at sea
source: https://www.merriam-webster.com/dictionary/grilse

Small-scale fishery
type: Class
subclass of: Fishery type
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-22T05:52:51Z
description: Labour-intensive fisheries using relatively small crafts (if any) and little capital and equipment per person-on-board. Most often family-owned. May be commercial or for subsistence (see below). Usually low fuel consumption. Often equated with artisanal fisheries.
source: http://www.oceansatlas.org/subtopic/en/c/1303/

Industrial Fishery
type: Class
subclass of: Fishery type
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-22T05:53:20Z
description: Capital-intensive fisheries using relatively large vessels with a high degree of mechanization and that normally have advanced fish finding and navigational equipment. Such fisheries have a high production capacity and the catch per unit effort is normally relatively high. In some areas of the world, the term "industrial fisheries" is synonymous with fisheries for species that are used for reduction to fishmeal and fish oil (e.g. the trawl fishery for sandeel in the North Sea or the Peruvian ourse-seine fishery for anchoveta).
source: http://www.oceansatlas.org/subtopic/en/c/1303/

Traditional fishery
type: Class
subclass of: Fishery type
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-22T05:57:23Z
description: Fisheries established long ago, usually by specific communities that have developed customary patterns of rules and operations. Traditional fisheries reflect cultural traits and attitudes and may be strongly influenced by religious practices or social customs. Knowledge is transmitted between generations by word of mouth. They are usually small-scale and/or artisanal.
source: http://www.oceansatlas.org/subtopic/en/c/1303/

Artisanal fishery
type: Class
subclass of: Fishery type
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-22T05:58:02Z
description: Typically traditional fisheries involving fishing households (as opposed to commercial companies), using relatively small amount of capital, relatively small fishing vessels, making short fishing trips, close to shore, mainly for local consumption. In practice, definition varies between countries, e.g. from hand-collection on the beach or a one-person canoe in poor developing countries, to more than 20 m. trawlers, seiners, or long-liners over 20m in developed countries. Artisanal fisheries can be subsistence or commercial fisheries, providing for local consumption or export. Sometimes referred to as small-scale fisheries In general, though by no means always, using relatively low level technology. Artisanal and industrial fisheries frequently target the same resources that may give rise to conflict.
source: http://www.oceansatlas.org/subtopic/en/c/1303/

Occurrence record(s)
type: Class
equivalent class: Restriction
  on property: contains occurrence data about
  some values from: Organism name or identifier
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-08-12T01:31:25Z
description: Instances of this Class contain one or more occurrence records, and may contain other information associated with those occurrences. "Occurrence" is used here in the sense of its Darwin Core definition: "An existence of an Organism (sensu http://rs.tdwg.org/dwc/terms/Organism) at a particular place at a particular time."
has db xref: http://rs.tdwg.org/dwc/terms/Occurrence

Axiom
annotated source: Occurrence record(s)
annotated property: hasDbXref
annotated target: http://rs.tdwg.org/dwc/terms/Occurrence
comment: "hasDbXref' is used here to indicate the equivalence of this Class with its usage in a Darwin Core context

Organism name or identifier
type: Class
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-08-12T17:29:30Z

Geocoordinates
type: Class
subclass of: Geospatial information
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-08-12T20:54:42Z

Dog salmon
type: Class
subclass of: Pacific salmon

King salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-10-07T01:05:10Z

Silver salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-10-07T01:15:21Z

Humpback salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-10-07T01:18:28Z

European system Age designation recruits
type: Class
subclass of: Total recruit abundance
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-12-09T20:48:48Z

European System Age Designation
type: Class
subclass of: Age class
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-12-09T20:51:19Z
comment: The European Age System Designation is based on a count of Freshwater (FW) and Saltwater (SW) Annuli in recruit otoliths, represented as "number of FW annuli" "." "number of SW annuli", e.g "1.4" indicating 1 FW annulus and 4 SW annuli. Some interpret the "Total Age" of a recruit with an "Age designation= 0.0" as a 1-year old salmon, while others interpret "Total Age" as a 0-year old salmon. That is, in some cases "Total Age" might be reported FW+SW+1, while in other cases it would simply be FW+SW: 1.3=total age of 4, or 5 years 2.3=total age of 5, or 6 years

Places and Locations
type: Class
creator: http://orcid.org/0000-0003-0632-7576
date: 2022-01-27T20:37:47Z

Sequential hermaphrodite
type: Class
subclass of: Hermaphrodite
creator: http://orcid.org/0000-0003-0632-7576
date: 2022-02-03T22:54:57Z
comment: Used to designate that some individual or individuals in a group of organisms possessed functional qualities of more than one gender "sequentially", i.e. not at the "same time" or within a single spawning event or season, but more typically across spawning events or seasons.

Simultaneous hermaphrodite
type: Class
subclass of: Hermaphrodite
creator: http://orcid.org/0000-0003-0632-7576
date: 2022-02-03T22:55:07Z
comment: Used to designate that some individual or individuals in a group of organisms possessed functional qualities of more than one gender "simultaneously", i.e. "at one time" or within a single spawning event or season.

Taxon (name)
type: Class
subclass of: Organism name or identifier
creator: http://orcid.org/0000-0003-0632-7576
date: 2022-02-04T02:06:35Z

Keta salmon
type: Class
subclass of: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2022-03-24T19:58:28Z

Dataset
type: Class
comment: A body of structured information describing some topic(s) of interest. (schema.org)

Walbaum, 1792
type: NamedIndividual
type: Author citation
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-26T22:06:58Z
comment: Johann Julius Walbaum (30 June 1724, Wolfenbüttel, Brunswick-Wolfenbüttel – 21 August 1799, Lübeck) was a German physician, naturalist and fauna taxonomist.

Axiom
annotated source: Walbaum, 1792
annotated property: comment
annotated target: Johann Julius Walbaum (30 June 1724, Wolfenbüttel, Brunswick-Wolfenbüttel – 21 August 1799, Lübeck) was a German physician, naturalist and fauna taxonomist.
source: https://en.wikipedia.org/wiki/Johann_Julius_Walbaum, accessed 2021-04-26 https://www.wikidata.org/wiki/Q68096, accessed 2021-04-26

Oncorhynchus gorbuscha
type: NamedIndividual
type: Oncorhynchus spp.
hasMigratoryPattern: Anadromous
hasReproductiveStrategy: Semelparity
name according to: Walbaum, 1792
vernacular name: Pink salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:44:44Z

Oncorhynchus keta
type: NamedIndividual
type: Oncorhynchus spp.
hasMigratoryPattern: Anadromous
hasReproductiveStrategy: Semelparity
name according to: Walbaum, 1792
vernacular name: Chum salmon
vernacular name: Dog salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:44:51Z

Oncorhynchus kisutch
type: NamedIndividual
type: Oncorhynchus spp.
hasMigratoryPattern: Anadromous
hasReproductiveStrategy: Semelparity
name according to: Walbaum, 1792
vernacular name: Coho salmon
vernacular name: Silver salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:44:59Z

Oncorhynchus nerka
type: NamedIndividual
type: Oncorhynchus spp.
hasMigratoryPattern: Anadromous
hasReproductiveStrategy: Semelparity
name according to: Walbaum, 1792
vernacular name: Sockeye salmon
vernacular name: Red salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:45:08Z

Oncorhynchus tshawytscha
type: NamedIndividual
type: Oncorhynchus spp.
hasMigratoryPattern: Anadromous
hasReproductiveStrategy: Semelparity
name according to: Walbaum, 1792
vernacular name: Chinook salmon
vernacular name: King salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:45:30Z

Chinook salmon
type: NamedIndividual
type: Oncorhynchus tshawytscha
type: Pacific salmon
scientific name: Oncorhynchus tshawytscha
hasADF&GCode: 410
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:45:38Z

Chum salmon
type: NamedIndividual
type: Oncorhynchus keta
type: Pacific salmon
scientific name: Oncorhynchus keta
hasADF&GCode: 450
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:45:41Z

Coho salmon
type: NamedIndividual
type: Oncorhynchus kisutch
type: Pacific salmon
name according to: Walbaum, 1792
scientific name: Oncorhynchus kisutch
hasADF&GCode: 430
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:45:43Z

Pink salmon
type: NamedIndividual
type: Oncorhynchus gorbuscha
type: Pacific salmon
scientific name: Oncorhynchus gorbuscha
hasADF&GCode: 440
creator: http://orcid.org/0000-0002-5300-3075

Sockeye salmon
type: NamedIndividual
type: Oncorhynchus nerka
type: Pacific salmon
scientific name: Oncorhynchus nerka
hasADF&GCode: 420
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-04-30T17:45:49Z

Oncorhynchus mykiss
type: NamedIndividual
type: Oncorhynchus spp.
hasMigratoryPattern: Anadromous
hasReproductiveStrategy: Iteroparity
name according to: Walbaum, 1792
vernacular name: Rainbow trout
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T21:27:02Z
comment: Sea-running, i.e. anadromous individuals of Rainbow Trout, are called Steelhead.

Axiom
annotated source: Oncorhynchus mykiss
annotated property: comment
annotated target: Sea-running, i.e. anadromous individuals of Rainbow Trout, are called Steelhead.
source: http://calfish.ucdavis.edu/species/

Pacific Ocean
type: NamedIndividual
type: Ocean
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T22:07:09Z
definition: An ocean that extends from the Arctic in the north to the Antarctic in the south, bounded by Asia and Australia on the west and the Americas on the east.

Axiom
annotated source: Pacific Ocean
annotated property: definition
annotated target: An ocean that extends from the Arctic in the north to the Antarctic in the south, bounded by Asia and Australia on the west and the Americas on the east.
has db xref: https://en.wikipedia.org/wiki/Pacific_Ocean, accessed 2021-06-15 https://www.wikidata.org/wiki/Q98, accessed 2021-06-15

Atlantic Ocean
type: NamedIndividual
type: Ocean
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T22:07:26Z
definition: An ocean bounded on the west by North and South America. In the north and northeast, it is separated from the Arctic Ocean by the Canadian Arctic Archipelago, Greenland, Iceland, Svalbard, and mainland Europe. It connects to the Arctic Ocean through the Denmark Strait, Greenland Sea, Norwegian Sea, and Barents Sea. To the east, the boundaries of the ocean proper are Europe, the Strait of Gibraltar (where it connects with the Mediterranean Sea, one of its marginal seas), and Africa. In the southeast, the Atlantic merges into the Indian Ocean, the border being defined by the 20 East meridian, running south from Cape Agulhas to Antarctica.

Axiom
annotated source: Atlantic Ocean
annotated property: definition
annotated target: An ocean bounded on the west by North and South America. In the north and northeast, it is separated from the Arctic Ocean by the Canadian Arctic Archipelago, Greenland, Iceland, Svalbard, and mainland Europe. It connects to the Arctic Ocean through the Denmark Strait, Greenland Sea, Norwegian Sea, and Barents Sea. To the east, the boundaries of the ocean proper are Europe, the Strait of Gibraltar (where it connects with the Mediterranean Sea, one of its marginal seas), and Africa. In the southeast, the Atlantic merges into the Indian Ocean, the border being defined by the 20 East meridian, running south from Cape Agulhas to Antarctica.
has db xref: https://en.wikipedia.org/wiki/Atlantic_Ocean, accessed 2021-06-15 https://www.wikidata.org/wiki/Q97, accessed 2021-06-15

Linnaeus, 1758
type: NamedIndividual
type: Author citation
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-26T23:58:33Z
description: The 10th edition of Systema Naturae is a book written by Swedish naturalist Carl Linnaeus and published in two volumes in 1758 and 1759, which marks the starting point of zoological nomenclature. In it, Linnaeus introduced binomial nomenclature for animals, something he had already done for plants in his 1753 publication of Species Plantarum.

Axiom
annotated source: Linnaeus, 1758
annotated property: description
annotated target: The 10th edition of Systema Naturae is a book written by Swedish naturalist Carl Linnaeus and published in two volumes in 1758 and 1759, which marks the starting point of zoological nomenclature. In it, Linnaeus introduced binomial nomenclature for animals, something he had already done for plants in his 1753 publication of Species Plantarum.
source: https://en.wikipedia.org/wiki/10th_edition_of_Systema_Naturae, accessed 2021-06-15 https://www.wikidata.org/wiki/Q4547210, accessed 2021-06-15

Richardson, 1836
type: NamedIndividual
type: Author citation
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T00:09:04Z
comment: Sir John Richardson (5 ovember 1787 - 5 June 1865) was a Scottish naval surgeon, naturalist and arctic explorer.

Axiom
annotated source: Richardson, 1836
annotated property: comment
annotated target: Sir John Richardson (5 ovember 1787 - 5 June 1865) was a Scottish naval surgeon, naturalist and arctic explorer.
source: https://en.wikipedia.org/wiki/John_Richardson_(naturalist), accessed 2021-06-15 https://www.wikidata.org/wiki/Q545944, accessed 2021-06-15

Oncorhynchus clarkii
type: NamedIndividual
type: Oncorhynchus spp.
hasReproductiveStrategy: Iteroparity
name according to: Richardson, 1836
vernacular name: Cutthroat trout
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T19:40:11Z
comment: Some populations of the coastal cutthroat trout (O. c. clarkii) are semi-anadromous. (source: https://en.wikipedia.org/wiki/Cutthroat_trout)

Salmo salar
type: NamedIndividual
type: Salmo spp.
hasMigratoryPattern: Anadromous
hasReproductiveStrategy: Iteroparity
name according to: Linnaeus, 1758
vernacular name: Atlantic salmon
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T19:45:43Z

Salvelinus malma
type: NamedIndividual
type: Salvelinus spp.
hasReproductiveStrategy: Iteroparity
name according to: Walbaum, 1792
vernacular name: Dolly Varden trout
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T19:45:59Z
comment: Some Dolly Varden individuals are anadromous

Axiom
annotated source: Salvelinus malma
annotated property: comment
annotated target: Some Dolly Varden individuals are anadromous
source: http://www.adfg.alaska.gov/index.cfm%3Fadfg=dollyvarden.main

Atlantic salmon
type: NamedIndividual
scientific name: Salmo salar
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T19:58:37Z

Dolly Varden trout
type: NamedIndividual
type: Pacific trout and char
hasMigratoryPattern: Semi-anadromous
scientific name: Salvelinus malma
hasADF&GCode: 531
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T19:58:43Z

Cutthroat trout
type: NamedIndividual
type: Pacific trout and char
type: Oncorhynchus clarkii
scientific name: Oncorhynchus clarkii
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-05-27T19:58:56Z

Iteroparity
type: NamedIndividual
type: Reproductive strategy
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:04:29Z
definition: A reproductive strategy which is characterized by multiple reproductive cycles over the course of an organism's lifetime.

Axiom
annotated source: Iteroparity
annotated property: definition
annotated target: A reproductive strategy which is characterized by multiple reproductive cycles over the course of an organism's lifetime.
source: https://en.wikipedia.org/wiki/Semelparity_and_iteroparity#Semelparity, accessed 01June2021 https://www.wikidata.org/wiki/Q522960, accessed 01June2021

Semelparity
type: NamedIndividual
type: Reproductive strategy
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:04:35Z
definition: A reproductive strategy which is characterized by a single reproductive episode, typically before death.

Axiom
annotated source: Semelparity
annotated property: definition
annotated target: A reproductive strategy which is characterized by a single reproductive episode, typically before death.
source: https://en.wikipedia.org/wiki/Semelparity_and_iteroparity#Semelparity, accessed 01June2021 https://www.wikidata.org/wiki/Q522960, accessed 01June2021

Anadromous
type: NamedIndividual
type: Migratory pattern
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:10:58Z
definition: ﻿A classification of fishes which spawn in freshwater, migrate to the ocean to forage and mature, and return to freshwater to spawn and begin the cycle again.

Axiom
annotated source: Anadromous
annotated property: definition
annotated target: ﻿A classification of fishes which spawn in freshwater, migrate to the ocean to forage and mature, and return to freshwater to spawn and begin the cycle again.
source: Schiewe, MH (2013) Salmon. Encyclopedia of Biodiversity (Second Edition). pg. 522-531. https://doi.org/10.1016/B978-0-12-384719-5.00293-8

Catadromous
type: NamedIndividual
type: Migratory pattern
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-01T20:11:04Z
definition: A classification of fishes which spawn in marine habitats, migrate to freshwater areas to forage and mature, then return to marine habitats to spawn.

Axiom
annotated source: Catadromous
annotated property: definition
annotated target: A classification of fishes which spawn in marine habitats, migrate to freshwater areas to forage and mature, then return to marine habitats to spawn.
has db xref: https://en.wikipedia.org/wiki/Fish_migration, accessed 01June2021 https://www.wikidata.org/wiki/Q852569, accessed 01June2021

Rainbow trout
type: NamedIndividual
type: Pacific trout and char
type: Oncorhynchus mykiss
scientific name: Oncorhynchus mykiss
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-15T20:05:20Z

Gibbons, 1855
type: NamedIndividual
type: Author citation
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-15T23:33:16Z
description: In 1855, William P. Gibbons, the curator of Geology and Mineralogy at the California Academy of Sciences, found a population and named it Salmo iridia (Latin: rainbow), later corrected to Salmo irideus. These names faded once it was determined that Walbaum's description of type specimens was conspecific and therefore had precedence. In 1989, morphological and genetic studies indicated that trout of the Pacific Basin were genetically closer to Pacific salmon (Oncorhynchus species) than to the Salmos – brown trout (Salmo trutta) or Atlantic salmon (Salmo salar) of the Atlantic Basin. Thus, in 1989, taxonomic authorities moved the rainbow, cutthroat, and other Pacific Basin trout into the genus Oncorhynchus. Walbaum's name had precedence, so the species name Oncorhynchus mykiss became the scientific name of the rainbow trout. The previous species names irideus and gairdneri were adopted as subspecies names for the coastal rainbow and Columbia River redband trout, respectively.

Axiom
annotated source: Gibbons, 1855
annotated property: description
annotated target: In 1855, William P. Gibbons, the curator of Geology and Mineralogy at the California Academy of Sciences, found a population and named it Salmo iridia (Latin: rainbow), later corrected to Salmo irideus. These names faded once it was determined that Walbaum's description of type specimens was conspecific and therefore had precedence. In 1989, morphological and genetic studies indicated that trout of the Pacific Basin were genetically closer to Pacific salmon (Oncorhynchus species) than to the Salmos – brown trout (Salmo trutta) or Atlantic salmon (Salmo salar) of the Atlantic Basin. Thus, in 1989, taxonomic authorities moved the rainbow, cutthroat, and other Pacific Basin trout into the genus Oncorhynchus. Walbaum's name had precedence, so the species name Oncorhynchus mykiss became the scientific name of the rainbow trout. The previous species names irideus and gairdneri were adopted as subspecies names for the coastal rainbow and Columbia River redband trout, respectively.
source: https://en.wikipedia.org/wiki/Rainbow_trout, accessed 2021-06-16 https://www.wikidata.org/wiki/Q187986, accessed 20212-06-16

Oncorhynchus mykiss irideus
type: NamedIndividual
type: Oncorhynchus spp.
name according to: Gibbons, 1855
vernacular name: Coastal rainbow trout
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-15T23:34:02Z
comment: Sea-running, i.e. anadromous individuals of Rainbow Trout are called Steelhead.

Axiom
annotated source: Oncorhynchus mykiss irideus
annotated property: comment
annotated target: Sea-running, i.e. anadromous individuals of Rainbow Trout are called Steelhead.
source: http://calfish.ucdavis.edu/species/

Coastal rainbow trout
type: NamedIndividual
type: Pacific trout and char
type: Oncorhynchus mykiss irideus
hasMigratoryPattern: Semi-anadromous
scientific name: Oncorhynchus mykiss irideus
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-15T23:43:41Z
broad match: Rainbow trout
narrow match: Steelhead trout

Semi-anadromous
type: NamedIndividual
type: Migratory pattern
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T16:03:41Z
comment: Term to designate that some, but not all, individuals of the taxon migrate from freshwater into the ocean for part of their life history. Used as Existential Quantifier on the appropriate taxonomic Class to indicate anadromous behavior of some Instances of that Class.

Coastal cutthroat trout
type: NamedIndividual
type: Pacific trout and char
type: Oncorhynchus clarkii clarkii
scientific name: Oncorhynchus clarkii clarkii
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T16:10:16Z
broad match: Cutthroat trout

Oncorhynchus clarkii clarkii
type: NamedIndividual
type: Oncorhynchus spp.
hasReproductiveStrategy: Iteroparity
name according to: Richardson, 1836
vernacular name: Coastal cutthroat trout
creator: http://orcid.org/0000-0002-5300-3075
date: 2021-06-16T17:31:20Z
comment: Some populations of the coastal cutthroat trout (O. c. clarkii) are semi-anadromous. (source: https://en.wikipedia.org/wiki/Cutthroat_trout)

Humpback salmon
type: NamedIndividual
type: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-21T23:13:14Z

Dog salmon
type: NamedIndividual
type: Oncorhynchus keta
type: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-21T23:13:40Z

Silver salmon
type: NamedIndividual
type: Oncorhynchus kisutch
type: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-21T23:15:02Z

Red salmon
type: NamedIndividual
type: Sockeye salmon
type: Oncorhynchus nerka
type: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-21T23:26:30Z

King salmon
type: NamedIndividual
type: Oncorhynchus tshawytscha
type: Pacific salmon
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-07-21T23:27:40Z

Kokanee salmon
type: NamedIndividual
hasMigratoryPattern: non-anadromous
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-08-03T22:40:10Z
description: Kokanee salmon
broad match: Sockeye salmon

non-anadromous
type: NamedIndividual
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-08-06T06:33:41Z
comment: Fish belonging to a taxon that is typically anadromous, that do not migrate seaward at some time in their life-cycle.

Bristol Bay
type: NamedIndividual
type: Bay
creator: http://orcid.org/0000-0003-0632-7576
date: 2021-08-10T22:44:31Z

Axiom
annotated source: Steelhead trout
annotated property: altLabel
annotated target: Oncorhynchus mykiss irideus Oncorhynchus m. irideus O. m. irideus "steelhead" @en
source: https://en.wikipedia.org/wiki/Steelhead_trout, accessed 2021-06-15 https://www.wikidata.org/wiki/Q64437771, accessed 2021-06-15

Thing
comment: search for '[ADDRESS COMMENT, THEN DELETE]' to find terms that need further review
comment: Salmonid species identification and classification still needs work. Instances of 'Pink salmon', for example, will not be inferred as instances of 'Oncorhynchus gorbuscha' (and vice versa) at the moment. Asserting owl:equivalentClass between these classes causes weird protege behavior after saving/closing/reopening Protege. Went with skos:exactMatch for now to avoid this problem.
comment: search for '[NEEDS ALIGNMENT]' to find terms that should have owl:equivalentClass assertions (but were removed for now b/c Protege was having issues)