Integbioデータベースカタログ
type: Catalog
label: Integbio Database Catalog @en
language: ja
language: en
publisher: 独立行政法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  label: Japan Science and Technology Agency National Bioscience Database Center @en
  address country: Japan @en
  address country: 日本
dataset: Full-Toxoplasma
dataset: Codon Usage Database
dataset: CGED
dataset: Full-Malaria
dataset: GO
dataset: Biomolecules Gallery
dataset: ANIMAL SEARCH SYSTEM (マウス系統検索）
dataset: CARD R-BASE
dataset: Photographs of mutants in Bombyx mori
dataset: 3DinSight
dataset: BioTermNet
dataset: 5'SAGE
dataset: FlyBase
dataset: 医用細胞資源センター
dataset: DDBJ
dataset: 脳画像データベース
dataset: ArkDB
dataset: Integbioデータベースカタログ
dataset: AAindex
dataset: BDGP
dataset: Chlamydomonas reinhardtii EST index
dataset: RIKEN Arabidopsis Full-Length Clone Database Search
dataset: RMG (アーカイブ)
dataset: GDBS（アーカイブ）
dataset: Cancer Chromosomes
dataset: Ghost Database
dataset: CluSTr
dataset: InterPro
dataset: Arch GeNet
dataset: DBGET Search
dataset: Aspergillus oryzae EST DataBase
dataset: BSORF
dataset: サイバーデンタル
dataset: nbdc01470
dataset: MDeR （アーカイブ）
dataset: BodyParts3D
dataset: nbdc01032
dataset: nbdc01214
dataset: Poplar Full-Length Clone Database Search
dataset: nbdc01169
dataset: RARGE
dataset: Macrophage Curated Database Index
dataset: NRSub
dataset: SGD
dataset: nbdc01086
dataset: ChromatinDB
dataset: MiBASE
dataset: nbdc01232
dataset: Plant snoRNA Database
dataset: Tobacco EST clones from BY-2 cells Database Search
dataset: MMDBJ
dataset: GENIES
dataset: CGEMS
dataset: National BioResource Project Zebrafish
dataset: FANTOM3
dataset: nbdc01136
dataset: RAFL cDNAs
dataset: Pseudogene.org
dataset: NIAS Oryza SNP Database
dataset: nbdc01322
dataset: nbdc02379
dataset: nbdc01602
dataset: nbdc01468
dataset: nbdc01628
dataset: nbdc01094
dataset: nbdc01388
dataset: nbdc01460
dataset: nbdc01592
dataset: nbdc01386
dataset: BombMap
dataset: Mouse SAGE Site
dataset: H-DBAS
dataset: nbdc01038
dataset: The NAISTrap Project
dataset: Het-PDB Navi

DDBJ taxonomy ontology
type: ConceptScheme
version info: 2017-03-30

Integbioデータベース分類タグ
type: ConceptScheme
title: Integbio Database Category Tag @en
version: 2017-09-13

nbdc00001
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-03-17
source: Integbio Database Catalog
primary topic: Integbioデータベースカタログ

nbdc00001
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Integbioデータベースカタログ

Integbioデータベースカタログ
type: Dataset
title: Integbio Database Catalog @en
description: This database collects URL information from international life science databases and the associated basic metadata, including descriptions of the database and information about the species. Databases include those independently operated by the Ministry of Education, Culture, Sports, Science and Technology, the Ministry of Health, Labour and Welfare, the Ministry of Agriculture, Forestry and Fisheries, and the Ministry of Economy, Trade and Industry. Since the catalog began in October 2012, the respective ministries have continued to accumulate information for the database, adding to and updating the catalog, which includes: - Database Catalog - WINGpro - MEDALS Database Catalog - AgrID Database Catalog - National Institute of Biomedical Innovation database list @en
description: 国内外の生命科学系データベースの所在情報 (URL)と、データベースについての説明や生物種などの基本的な属性情報 (メタデータ)をまとめたデータベースです。 文部科学省、厚生労働省、農林水産省、経済産業省の4省による生命科学系データベース統合の取り組みの一環としてこれまで4省が独自にもっていた以下のデータベースのリストを集約し、4省にまたがるデータベースカタログを構築しました。2011年12月にベータ版を公開し、2012年10月には正規公開版サイトを公開しました。その後も4省が協力して継続的にデータベースの情報を収集し、カタログへの追加・更新を行っています。 - 生命科学系データベースカタログ - WINGpro - MEDALSデータベース便覧 - AgrIDのデータベース便覧 - 医薬基盤・健康・栄養研究所のデータベースリスト
language: ja
language: en
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  label: Japan Science and Technology Agency National Bioscience Database Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: about
  rights: download
  access URL: http://integbio.jp/dbcatalog/en/download
  access URL: http://integbio.jp/dbcatalog/download
landing page: http://integbio.jp/dbcatalog/?lang=en
landing page: http://integbio.jp/dbcatalog
theme: T0031
theme: T0030
status: Active @en
status: 稼動中

nbdc00002
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 3DinSight

nbdc00002
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 3DinSight

3DinSight
type: Dataset
description: 3DinSight is a database that helps users explore the relationship between the structure, function, and properties of biomolecules. Structural data are derived from the Protein Data Bank (PDB) and displayed as real-time 3D images by RasMol and Virtual Reality Modeling Language (VRML). Functional domains and mutations are identified by PROSITE and Protein Mutant Database, respectively. @en
description: 生体分子の構造、機能及び物性に関する統合型データベースです。蛋白質立体構造データベース (PDB)を中心に、PROSITE、Protein Mutant Database (PMD)などの機能情報、PIR、SWISSPROT、アミノ酸の物理化学的性質などのデータをリレーショナルデータベース上に統合しました。構造、機能、物性を組み合わせたさなざまな検索を行い、これらの間の関係について調べることができます。構造と機能及び物性の間の関係性については可視化を行っています (例：自動的に機能部位をマッピングした構造データのリアルタイム3D表示など）。
language: en
publisher: 九州工業大学
  type: Organization
  label: Kyushu Institute of Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9545451
landing page: http://gibk26.bio.kyutech.ac.jp/jouhou/3dinsight/3DinSight.html
theme: T0022
theme: T0007
status: 休止
status: Inactive @en

nbdc00003
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 5'SAGE

nbdc00003
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 5'SAGE

5'SAGE
type: Dataset
alternative: 5'-end serial analysis of gene expression database
description: ヒト細胞株11ラインについて、5' SAGE法を用いて網羅的に遺伝子発現の解析を行った結果を収録したデータベースです。ライン間の発現の違いが分かりやすく表示されます。 オリジナルSAGE法は3'側の特定の断片を用いて遺伝子を特定するものであり、最長27bpの断片を用いることで発現遺伝子のゲノム上の位置を決定することができます。しかしながら5'端の情報は正確でないものが多く、遺伝子の機能を明らかにする上で問題になることがあります。こうした問題を克服し、さらに詳細な解析を行うため、転写開始点及び遺伝子発現頻度を観察できる5'-end SAGE (5'SAGE)法を開発しました。
language: en
publisher: 東京大学 大学院新領域創成科学研究科
  type: Organization
  label: The University of Tokyo Graduate School of Frontier Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15300261
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608259
landing page: http://5sage.gi.k.u-tokyo.ac.jp/
theme: T0021
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00004
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: AAindex

nbdc00004
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: AAindex

AAindex
type: Dataset
alternative: Amino acid indices, substitution matrices and pair-wise contact potentials @en
description: The AAindex database collects and organizes amino acid properties. Users can search from dozens of studies summarizing multiple biophysical parameters for three types of information: - AAindex1: Biophysical properties of individual amino acids. All indexed studies have been compared to other studies in the database and pairwise correlation coefficients between related studies are provided. - AAindex2: Substitution indices indicating amino acid similarity. - AAindex3: Pairwise contact potentials between amino acids in various contexts. All three databases can be searched either by study or keyword using DBGET. @en
description: アミノ酸やアミノ酸ペアの物理化学的、生化学的な様々な特性を、過去の文献データの収集とクラスター解析により数値で指標化したデータベースです。AAindex1、AAindex2、AAindex3の3つのデータベースから構成されています。 AAindex1：アミノ酸の特性を表現した20の数値セットのデータベース AAindex2：アミノ酸置換行列のデータベース AAindex3：アミノ酸間の相互作用ポテンシャルのデータベース
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592278
references: http://rdf.ncbi.nlm.nih.gov/pubmed/3244698
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847231
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9053899
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17998252
distribution: Distribution
  description: aaindex help.html
  description: aaindex.doc
  access URL: ftp://ftp.genome.jp/pub/db/community/aaindex/
landing page: http://www.genome.jp/aaindex/
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00005
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ANIMAL SEARCH SYSTEM (マウス系統検索）

nbdc00005
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: ANIMAL SEARCH SYSTEM (マウス系統検索）

ANIMAL SEARCH SYSTEM (マウス系統検索）
type: Dataset
title: Animal Search System @en
description: ヒトのモデル動物として遺伝子機能の解明、病気の治療法や薬の開発に役立つマウスについて、その系統の収集・保存・提供を実施しています。このマウス系統検索では、フリーキーワード、系統名、遺伝子名、RBRC NOを指定することが可能です。系統の種類や研究目的から探すこともできます。またオンラインで提供依頼書の作成ができます。オンラインカタログで検索したリソースをカートに入れることで必要な書類を自動的に作成します。
description: Animal Search System allows keyword searches to be performed on more than 2000 strains of mice available from the RIKEN BRC, including transgenic, knockout, inbred, wild-derived, ENU mutant and congenic strains. Although the top page is written in Japanese, each search result has a link to the English page. The system also provides detailed information that capture the characteristics of the strain, such as the strain name, description, gene details, references, availability status, images and so on. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
landing page: http://www2.brc.riken.jp/lab/animal/search.php
theme: T0014
theme: T0015
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
theme: T0018
status: Active @en
status: 稼動中

nbdc00006
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Arch GeNet

nbdc00006
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Arch GeNet

Arch GeNet
type: Dataset
alternative: Archaeal Gene Network
description: 好熱性古細菌 (Thermoplasma volcanium GSS1)において、環境適応性に関わる発現プロファイルの同定結果を収録したデータベースです。3種類の環境下における遺伝子発現をマイクロアレイで測定した結果と、好気的環境下、嫌気的環境下におけるタンパク質発現を2次元ゲル電気泳動で解析した結果を掲載しています。
description: Arch genet is a database providing summaries of the expression of individual genes of Thermoplasma volcanium GSS1, a thermophilic archaeon, during adaptation to various environments, as identified experimentally. All the genes in a given genome are not used simultaneously at any given time in vivo, and organisms adapt to various environments by the process of re-selecting concerned populations of genes although the genomic information remains the same. Arch genet provides visual data to contribute to a better understanding of gene networks as applicable to environmental adaptation. @en
language: en
publisher: 独立行政法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://riodb.ibase.aist.go.jp/db067/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/273116
theme: T0020
theme: T0026
theme: T0007
theme: T0002
theme: T0024
theme: T0029
status: 運用終了
status: Closed @en

nbdc00007
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: ARCHAIC

nbdc00007
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: ARCHAIC

ARCHAIC
type: Dataset
alternative: Archaebacterial Information Collection @en
description: 古細菌ゲノムDNAの配列とその遺伝子情報を提供しているデータベースです。古細菌ゲノムのDNA配列（独自に決定したものを含む）を独自に開発した生物情報学的手法を用いて解析することにより、ゲノム全体の構成を解明するとともにゲノム構成の比較を行うことを目的に構築しています。対象菌株は、Pyrococcus sp. OT3、Thermoplasma volcanium GSS1、Archaeoglobus fulgidus。
description: ARCHAIC stands for 'ARCHAebacterial Information Collection' is a database of analyzed archaebacterial genomic DNA sequences. Determinations follow a consistent method so that the overall organization of the genomes can be understood better and different species can be compared based on genomic DNA sequences. Information on the identification of genes, pseudo-genes, and operons, derived by original methods, is available. The complete genomic DNA sequences of Pyrococcus sp. OT3 and Thermoplasma volcanium GSS1, an aero/anaero-facultative archaebacterium, respectively, can also be found here. @en
language: en
publisher: 独立行政法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9598984
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11121031
landing page: http://riodb.ibase.aist.go.jp/archaic/ARCHAIC.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/273116
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2234
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/70601
theme: T0001
status: 運用終了
status: Closed @en

nbdc00008
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ArkDB

nbdc00008
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ArkDB

ArkDB
type: Dataset
description: 家畜やその他の動物のゲノムマッピングデータを提供する公共レポジトリです。ネコ、ニワトリ、ウシ、シカ、アヒル、ウマ、ブタ、ウズラ、サケ、シーバス、ヒツジ、シチメンチョウのマイクロサテライト、SSCP等のマーカーを収録しており、核型および染色体情報が一覧できます。
description: ArkDB is a database that contains extensive mapping information of the genomes of farm animals and other animal species. This repository records the maps in detail as well as their markers with some marker-marker relationships. A species table provides data on specific chromosomes. The Maps menu leads to the results of mapping analyses. A keyword search is available. GFF files may be downloaded and displayed in the Ensembl genome browser. @en
language: en
publisher: The Roslin Institute （University of Edinburgh）
  type: Organization
  label: The Roslin Institute(University of Edinburgh) @en
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125062
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19682365
landing page: http://www.thearkdb.org/arkdb/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9860
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8839
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9103
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9796
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9940
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/93934
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9685
theme: T0003
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13489
status: Active @en
status: 稼動中

nbdc00009
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ArrayExpress

nbdc00009
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ArrayExpress

ArrayExpress
type: Dataset
alternative: ArrayExpress Archive @en
description: ArrayExpress is a database of experiments related to the structure, function, evolution, and mapping of genomes. It contains information on gene expression obtained from microarray and sequencing studies. Altogether 36,292 experiments are listed. Each experiment is described and reported in detail. Altogether 13,748 arrays are listed and described. Keyword and advanced search options are available. The data may also be downloaded. @en
description: 遺伝子発現を含む機能ゲノミクス実験データの欧州版アーカイブです。ユーザはMIAMEおよびMINSEQE形式のデータを登録したりダウンロードすることが可能です。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21071405
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19015125
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17132828
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16939801
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14744115
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519949
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608260
distribution: Distribution
  rights: terms-of-use
  access URL: ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/
landing page: http://www.ebi.ac.uk/arrayexpress
theme: T0024
theme: T0001
theme: T0007
theme: T0006
theme: T0002
status: Active @en
status: 稼動中

nbdc00010
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-21
source: Integbio Database Catalog
primary topic: ARTADE

nbdc00010
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-21
source: Integbio Database Catalog
primary topic: ARTADE

ARTADE
type: Dataset
alternative: ARabidopsis Tiling-Array-based Detection of Exons @en
description: シロイヌナズナのゲノムワイドタイリングアレイデータのアノテーションのためのプログラムです。シロイヌナズナのタイリングアレイデータにATRADEを適用した結果をデータベース化し、Webから検索できるようになっています。アカデミックユーザは、ライセンス契約同意の下で、プログラムのソースコードを自由にダウンロードできます。
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16098113
landing page: http://omicspace.riken.jp/ARTADE/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0024
theme: T0001
theme: T0002
status: 運用終了
status: Closed @en

nbdc00011
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Aspergillus oryzae EST DataBase

nbdc00011
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-16
source: Integbio Database Catalog
primary topic: Aspergillus oryzae EST DataBase

Aspergillus oryzae EST DataBase
type: Dataset
description: This database allows users to explore the gene expression of Aspergillus oryzae with different environmental stimuli from 21,368 EST clones. @en
description: 麹菌EST解析プロジェクトで得られた成果に、さらに当研究所独自で解析した「ふすま麹」および「米麹」からのEST解析結果をあわせデータベースを作成し、公開しています。全21,368クローンから得られた7,580のコンティグがデータベース化されています。BLASTによる相同性検索などができます。 現在は情報提供を一時停止しており、こちらのサイト（http://www.nrib.go.jp/data/EST2/est.htm ）に連絡先についての情報が記載されています。
language: en
publisher: 独立行政法人酒類総合研究所
  type: Organization
  label: National Research Institute of Brewing @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17540709
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18448366
landing page: http://nribf21.nrib.go.jp/EST2/
theme: T0021
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5062
theme: T0002
status: Suspended @en
status: 公開停止中

nbdc00012
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Atlas of Genetics and Cytogenetics in Oncology and Haematology

nbdc00012
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-13
source: Integbio Database Catalog
primary topic: Atlas of Genetics and Cytogenetics in Oncology and Haematology

Atlas of Genetics and Cytogenetics in Oncology and Haematology
type: Dataset
description: The Atlas of genetics and Cytogenetics in Oncology and Haematology is a database for genes, cytogenetics and clinical entities in cancer, and cancer-prone diseases. It provides concise and updated reviews (cards) or longer texts (deep insights), a huge portal towards genetics and/or cancer databases and journals, teaching items in genetics for students in Medicine and in Sciences, and a case report section. Users are able to search data using gene name, solid tumors name, chromosomal number, or cancer-prone diseases. @en
description: 「Atlas of Genetics and Cytogenetics in Oncology and Haematology」はオンラインの査読付きジャーナルおよびデータベースで、 癌や高発癌性疾患の遺伝学や臨床情報を扱っています。細胞遺伝学、分子生物学、腫瘍学、血液学、病理学の臨床医や研究者による、研究者のために構築されています。
language: en
publisher: ATLAS
  type: Organization
  address country: Global
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125120
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592271
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847226
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520000
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10942808
landing page: http://atlasgeneticsoncology.org/
theme: T0015
theme: T0029
theme: T0001
theme: T0007
theme: T0013
theme: T0030
status: Active @en
status: 稼動中

nbdc00013
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-04-25
source: Integbio Database Catalog
primary topic: Barley DB

nbdc00013
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-04-25
source: Integbio Database Catalog
primary topic: Barley DB

Barley DB
type: Dataset
alternative: Barley Bioresource Database @en
description: Barley DBでは、岡山大学資源植物科学研究所がナショナルバイオリソースプロジェクトオオムギの代表機関として保存している分譲可能なオオムギリソース情報（オオムギ各系統の種子や穂の写真、採取地マップ、cDNA/ESTクローン）の情報を提供しています。オオムギ系統、BACライブラリー、cDNAクローンについて、研究用に限ってリソースを配布しています。オオムギ系統の品種ごとに、起源、形態的・生理的・生態学的形質等も得られます。
description: National BioResource Project BarleyDB includes information about the barley germplasm preserved in the Institute of Plant Science and Resources, Okayama University. Users can search and browse information of barley germplasm (spike/seed images, collection sites map) and full length cDNA clones and ESTs of barley. These barley resources are available for research purpose. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: termsofuse.html
  rights: termsofuse en.html
  access URL: http://earth.lab.nig.ac.jp/~dclust/download_en.html
  access URL: http://earth.lab.nig.ac.jp/~dclust/download.html
landing page: http://earth.lab.nig.ac.jp/~dclust/cgi-bin/index.cgi
landing page: http://earth.lab.nig.ac.jp/~dclust/cgi-bin/index.cgi?lang=en
theme: T0016
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4513
theme: T0002
theme: T0003
theme: T0021
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00014
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BDGP

nbdc00014
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BDGP

BDGP
type: Dataset
alternative: Berkeley Drosophila Genome Project @en
description: ショウジョウバエゲノムプロジェクトのホームページです。ゲノム配列、配列アノテーション、ESTやcDNA、遺伝子発現パターン等のデータを公開しています。クローンやライブラリの分配も行っています。
description: This is the website for the Berkeley Drosophila Genome Project, and has information about genomic sequencing, sequence annotations, as well as data on EST, cDNA, and gene expression patterns. It also distributes genomic or cDNA clones, library filters or fly stocks and vector maps. @en
language: en
publisher: The Berkeley Drosophila Genome Project
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10471706
distribution: Distribution
  description: download.html
  rights: citations.html
  access URL: http://www.fruitfly.org/sequence/download.html
landing page: http://www.fruitfly.org/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0024
theme: T0029
theme: T0001
theme: T0007
theme: T0002
theme: T0003
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00015
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-30
source: Integbio Database Catalog
primary topic: Biomolecules Gallery

nbdc00015
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-30
source: Integbio Database Catalog
primary topic: Biomolecules Gallery

Biomolecules Gallery
type: Dataset
description: 生体分子構造の画像を収集したデータベースです。核酸、タンパク質、タンパク質-DNA複合体、アミノ酸と塩基の相互作用が登録されています。
description: This gallery uses high quality images of spatial models of nucleic acids, proteins and their complexes. In this database, users can visualize basic biomolecules (nucleic acids and amino acid) and complex motifs (nucleic acid base-pairing, protein secondary structures and functional domains). @en
language: en
publisher: 九州工業大学
  type: Organization
  label: Kyushu Institute of Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://dna00.bio.kyutech.ac.jp/image/gallery.html
theme: T0022
theme: T0026
theme: T0007
theme: T0005
theme: T0006
theme: T0029
status: Active @en
status: 稼動中

nbdc00016
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BioTermNet

nbdc00016
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BioTermNet

BioTermNet
type: Dataset
description: Users can use the BioTermNet database to explore relationships between proteins, DNA, gene expression, and drug compounds: 1. Related concepts from a single concept; 2. A single concept to a single concept; 3. Multiple concepts to a single concept; 4. Common concepts among multiple concepts; and 5. gene clustering. Key examples of these relationships are: the identification of interactions between drugs and biomolecules, linkage analyses of cancer-related genes, and interpretation of DNA/protein analyses. The output data is expressed as protein-protein/gene/family/compound (drug) interactions (PRIME), statistical relatedness, or protein-biological process function (PRIME-GO). @en
description: 情報検索技術と情報抽出技術を用いて、概念ネットワークを自動的に描画するシステムです。このシステムでは、(1)概念の関係性が1件以上の文献アブストラクトに明確に記述されている、(2)それぞれの概念がMEDLINEアブストラクト中に共起している場合、に2つの概念が関連していると見なしています。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
landing page: http://btn.ontology.hgc.jp/
theme: T0019
status: 休止
status: Inactive @en

nbdc00017
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Photographs of mutants in Bombyx mori

nbdc00017
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Photographs of mutants in Bombyx mori

Photographs of mutants in Bombyx mori
type: Dataset
description: カイコの突然変異体の写真を集めた画像集です。変異遺伝子名をクリックするとカイコの画像が表示されます。
description: This photographic database contains images of mutant Bombyx mori larvae along with changes in larvae length. Currently, the database comprises more than 40 mutants that map to multiple chromosomes. @en
language: en
publisher: 東京大学
  type: Organization
  label: The University of Tokyo @en
  address country: Japan @en
  address country: 日本
landing page: http://papilio.ab.a.u-tokyo.ac.jp/bioresource/shimada/mutant_photo.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0029
theme: T0014
status: Active @en
status: 稼動中

nbdc00018
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: 脳画像データベース

nbdc00018
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: 脳画像データベース

脳画像データベース
type: Dataset
title: Brain Atlas Database of Japanese Monkey for WWW. @en
description: ヒト、ニホンザル、アカゲザルの脳のMRI画像の連続写真をデジタル化し、マウスのみの操作で簡便に参照可能なデータベースです。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://riodb.ibase.aist.go.jp/brain/index.php
theme: T0014
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9542
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: 運用終了
status: Closed @en

nbdc00019
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: The Comprehensive Enzyme Information System (BRENDA)

nbdc00019
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Comprehensive Enzyme Information System (BRENDA)

The Comprehensive Enzyme Information System (BRENDA)
type: Dataset
description: BRENDA is an extensive database of enzymes, which came online in January 2013. As many as 5858 various enzymes are listed and a comprehensive amount of information about each of these is available, for example enzyme structure, reaction and specificity, disease-related information, stability and functional parameters. The search option EC Explorer gives entry to a page where the enzymes are grouped under oxidoreductases (of 6,523 organisms), transferases (of 4,594 organisms), hydrolases (of 7,847 organisms), lyases (of 3,498 organisms), isomerases (of 1,329 organisms) and ligases (of 1,100 organisms). A Quick search option (enter name or ID number) is offered, as well as a Full Text and an Advanced search option, where a combination of criteria can be entered to narrow down the search results. @en
description: 酵素の機能と特性データを収集した総合的な酵素情報データベースです。データの大半は主要文献から手動で抽出したもので、酵素の機能、構造、生成反応、生物種、活性、実験手法、応用、変異体に関する情報を網羅しています。関連するパスウエイへのリンクや、テキストマイニングによる疾患情報も含まれています。
language: en
publisher: Technische Universitat Braunschweig
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17202167
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752250
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11796225
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681450
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21827651
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18984617
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21030441
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12850129
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21062828
landing page: http://www.brenda-enzymes.info/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9860
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9611
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0026
theme: T0019
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/99883
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8364
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0021
theme: T0015
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: Active @en
status: 稼動中

nbdc00020
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BSORF

nbdc00020
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BSORF

BSORF
type: Dataset
alternative: Bacillus subtilis Genome Database
description: JAFAN（枯草菌の日本機能解析ネットワーク）による枯草菌ORFデータベースです。枯草菌ゲノム上のORFと詳細なアノテーション、変異株リスト、マイクロアレイによる遺伝子発現パターンが掲載されています。
description: BSORF is a repository for Bacillus subtilis genomic information from researchers in multiple countries. Detailed information regarding B. subtilis mutants is listed, as well as DNA array data and links to the KEGG Expression Database. In addition, users can search for nucleotide and amino acid sequence homology against B. subtilis genomic sequences or coding sequences. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12682299
landing page: http://bacillus.genome.jp/
theme: T0014
theme: T0024
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
theme: T0002
theme: T0021
theme: T0017
status: Active @en
status: 稼動中

nbdc00021
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: Cancer Chromosomes

nbdc00021
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: Cancer Chromosomes

Cancer Chromosomes
type: Dataset
description: ヒト、マウスのがん細胞株の核型解析結果、CGH解析結果、臨床情報等を提供するデータベースです。NCI/NCBIのSKY/M-FISH & CGH Database、NCIのMitelman Database of Chromosome Aberrations in Cancer、NCIのRecurrent Aberrations in Cancerの3つのデータベースを統合したシステムとなっています。身体の部位や診断名、染色体位置から検索できます。現在は廃止され、データはNCBI Database of Genomic Structural Variation (dbVar) URL: http://www.ncbi.nlm.nih.gov/dbvar ( カタログ詳細ページ：http://integbio.jp/dbcatalog/record/nbdc00244) に移行しました。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.ncbi.nlm.nih.gov/cancerchromosomes
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 運用終了
status: Inactive @en

nbdc00022
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CARD R-BASE

nbdc00022
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CARD R-BASE

CARD R-BASE
type: Dataset
alternative: Center for Animal Resources and Development Database @en
description: CARD (Center for Animal Resources and Development) R-BASE (Resource Database) is the database for cryopreserved embryos of genetically engineered mice. CARD have over 1,500 mouse strains, 842,000 frozen embryos and 26,000 straws containing frozen sperm, and disclose information about 1,300 deposited strains. Over 400 strains of frozen embryos or mice produced from frozen embryos and sperm are available on request both domestically and internationally. @en
description: 熊本大学生命資源開発研究・支援センター動物資源開発研究部門(CARD)に保存されている遺伝子改変マウスの系統、遺伝子、文献、疾患および応用分野に関する情報が記載されています。 また、寄託、分与/分譲（供給）やマウスおよびラットに関する命名規約、遺伝子・系統の表記方法および施設の登録略記号についての情報も掲載しています。
language: ja
language: en
publisher: 熊本大学 生命資源研究・支援センター
  type: Organization
  label: Kumamoto University Institute of Resource Development and Analysis @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: index.jsp
  access URL: http://cardb.cc.kumamoto-u.ac.jp/transgenic/download.jsp
landing page: http://cardb.cc.kumamoto-u.ac.jp/transgenic/index.jsp
theme: T0014
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
theme: T0030
theme: T0019
status: Active @en
status: 稼動中

nbdc00023
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CCDS

nbdc00023
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CCDS

CCDS
type: Dataset
alternative: Consensus CDS
description: 高品質で確実にアノテーション付けされたヒトとマウスのタンパク質コード領域のコアセットを集約し、提供しているデータベースです。
description: This database seeks to identify a core set of human and mouse protein coding regions of high quality that are consistently annotated. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19498102
distribution: Distribution
  description: README
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/
landing page: http://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi
theme: T0021
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00024
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-20
source: Integbio Database Catalog
primary topic: 医用細胞資源センター

医用細胞資源センター
type: Dataset
description: 東北大学加齢医学研究所医用細胞資源センターは、国立大学の中で唯一の癌細胞バンクであり、国内外の研究者に多数の細胞株を供給しています。種々のヒト癌細胞、正常細胞、動物腫瘍細胞、正常機能保持細胞、単クローン抗体産生ハイブリドーマ細胞の新たな細胞株の樹立開発するとともに、貴重な細胞の収集に努め、細胞保存、供給、品質管理、データベース構築、インターネット公開を行っています。本ページでは、保有細胞のカタログが掲載されているほか、細胞供給依頼書や同意書などの書式も用意されています。
language: ja
publisher: 東北大学 加齢医学研究所
  type: Organization
  address country: 日本
landing page: http://www2.idac.tohoku.ac.jp/dep/ccr/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9534
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10036
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9483
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9986
theme: T0017
status: 稼動中

nbdc00025
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CGED

nbdc00025
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CGED

CGED
type: Dataset
alternative: Cancer Gene Expression Database @en
description: The CGED database comprises gene expression profile data and related clinical information for breast (prognosis and docetaxel treatment), colorectal, hepatocellular, esophageal, thyroid, and gastric cancers, collected through a collaboration between four medical centers in Japan. The data is searchable by type of cancer, gene name/symbol, Swiss-Prot functional annotation, GenBank accession number, RefSeq, or p-values/q-values for differential gene expression and results are displayed as graphical representations of expression and clinical data. @en
description: 癌の遺伝子発現データ及び臨床情報の統合データベースです。乳がん、結腸直腸がん、肝細胞がん、食道がん、甲状腺がん、胃がんの遺伝子発現プロファイル解析を行ったデータと詳細な臨床情報が格納されています。遺伝子発現データと臨床情報の関係は、モザイクプロットによりグラフィカルに表示されます。一般の分子生物学者にも利用しやすいように、一般的な遺伝子名による検索の他、 Gene Ontology TermやSwissProt functional annotationによる機能グループの検索が可能です。
language: en
publisher: 情報・システム研究機構 ライフサイエンス統合データベースセンター
  type: Organization
  label: Research Organization of Information and Systems Database Center for Life Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608255
landing page: http://lifesciencedb.jp/cged/
theme: T0015
theme: T0024
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00026
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CGH Data Base

nbdc00026
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CGH Data Base

CGH Data Base
type: Dataset
alternative: Comparative Genomic Hybridization Database
description: 種々の癌細胞株のアレイCGH(Comparative Genomic Hybridization) 解析データを対象としたデータベースです。
description: The CGH Database is a portal of databases with thorough data on human genome aberrations and variations. These have been detected by bacterial artificial chromosome (BAC) clones-based array comparative genomic hybridization (aCGH). There is a link to the CGH (Comparative Genomic Hybridization) Database with genomic aberrations that have been detected by conventional CGH and aCGH in more than a dozen different cancer cell lines. There is also a link to the MCG CNV Database, which provides genomic copy number variants that were detected by array-CGH analyses of healthy Japanese parent and child trios. These databases are partly supported by the Ministry of Education, Culture, Sports, Science and Technology (MEXT), the Japan Science and Technology Corporation (JST) and the Industrial Technology Development Organization (NEDO). @en
language: ja
language: en
publisher: 東京医科歯科大学 難治疾患研究所
  type: Organization
  label: Tokyo Medical and Dental University Medical Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.cghtmd.jp/CGHDatabase/index_j.jsp
landing page: http://www.cghtmd.jp/CGHDatabase/index_e.jsp
theme: T0015
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00027
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ChEBI

nbdc00027
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ChEBI

ChEBI
type: Dataset
alternative: Chemical Entities of Biological Interest
description: 生命プロセスに介在する小分子化合物の辞典です。ゲノムに直接コード化されている分子（例：核酸、タンパク、ペプチド）はこのデータベースの対象外です。登録されているデータは、多数の情報源のデータを組み合わせ、冗長性を除いています。主な情報源はIntEnz(EBI)、KEGG COMPOUND、PDBeChem(EBI)、ChEMBL(EBI)です。 ChEBIオントロジー（化合物オントロジー）による分類情報と階層表示が特徴です。 全てのエントリーにはデータの信頼性を示す★印がついています； 3つ星：ChEBIチームが手作業で注釈付けを行ったもの。2つ星：ChEMBLチームまたはデータ提供者が手作業で注釈付けを行ったもの。1つ星：情報源から自動的に取得した仮エントリーで、手作業での注釈付けが行われていないもの。
description: ChEBI is a collection of data on entities of biological interest. This database concentrates on assembling data on smaller chemical compounds, such as atoms, molecules, ions, radicals etc. These should be produced in nature or be synthetic molecules affecting biological processes in living organisms. ChEBI does not generally include molecules directly encoded by the genome. The database contains 31,651 entries with annotations. A keyword search option is available. In addition to this an advanced search option, which includes a structure drawing tool, is provided. The ChEBI database can be searched individually or in combination with other databases. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17932057
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19854951
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19496059
distribution: Distribution
  description: README.txt
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/chebi/downloadsForward.do
landing page: http://www.ebi.ac.uk/chebi/
theme: T0009
theme: T0010
theme: T0008
theme: T0011
theme: T0019
status: Active @en
status: 稼動中

nbdc00028
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Chlamydomonas reinhardtii EST index

nbdc00028
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Chlamydomonas reinhardtii EST index

Chlamydomonas reinhardtii EST index
type: Dataset
description: かずさDNA研究所で決定したクラミドモナスのEST配列と、非冗長タンパク配列データベースとの間で行ったblastx検索の結果が収録されています。
description: This database collects EST for Chlamydomonas reinhardtii, each with blastx analysis against the non-redundant protein database results. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11089912
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10691129
distribution: Distribution
  access URL: http://est.kazusa.or.jp/en/plant/chlamy/EST/index.html
landing page: http://est.kazusa.or.jp/en/plant/chlamy/EST/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3055
theme: T0002
status: Active @en
status: 稼動中

nbdc00029
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-11-15
source: Integbio Database Catalog
primary topic: CIBEX

nbdc00029
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-11-15
source: Integbio Database Catalog
primary topic: CIBEX

CIBEX
type: Dataset
alternative: Center for Information Biology gene Expression database @en
description: CIBEXは、EBIのArrayExpress、NCBIのGene Expression Omnibus(GEO)とともに、遺伝子発現データの国際的レポジトリとして機能しているデータベースです。MGEDが提唱したMIAME互換標準フォーマットで記述されたデータを登録しています。
description: CIBEX is a repository of gene expression data from microarray-based experiments measuring mRNA, SAGE tags, and proteomic data from mass spectrometry. All included data meet MIAME standards. @en
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生命情報・DDBJ研究センター
  type: Organization
  label: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15669238
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14744116
distribution: Distribution
  access URL: http://cibex.nig.ac.jp/data/index.html
landing page: http://cibex.nig.ac.jp/data/index.html
theme: T0024
theme: T0002
status: Active @en
status: 稼動中

nbdc00030
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: CluSTr

nbdc00030
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: CluSTr

CluSTr
type: Dataset
alternative: Clusters of SWISS-PROT and TrEMBL proteins database @en
description: UniProtやIPIに登録されているタンパク質を関連のあるグループに自動的に分類したデータベースです。分類手法は、タンパク配列間のペアワイズ比較法に基づいています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125042
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520029
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15961444
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125045
landing page: http://www.ebi.ac.uk/clustr/
theme: T0021
theme: T0028
theme: T0007
status: 運用終了
status: Closed @en

nbdc00031
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CORG

nbdc00031
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CORG

CORG
type: Dataset
alternative: Comparative Regulatory Genomics @en
description: 複数のゲノム配列で保存されている非コードDNA領域は、制御エレメントである可能性が高いと考えられます。そこで、10種類の脊椎動物の相同遺伝子の組の上流領域から、保存されている非コード領域を収集し、データベース化しました。保存領域はゲノムビューワで表示されます。
language: en
publisher: Max-Planck-Institut fur Entwicklungsbiologie
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12385988
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519946
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15723697
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17135197
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16888353
landing page: http://corg.eb.tuebingen.mpg.de/cgi-bin/index.pl
theme: T0021
theme: T0001
theme: T0005
status: 休止
status: Inactive @en

nbdc00032
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CSA

nbdc00032
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CSA

CSA
type: Dataset
alternative: Catalytic Site Atlas @en
description: 酵素の活性部位を集めたデータベースです。Protein Data Bank (PDB）番号やEC番号、Swiss-Prot番号で検索すると、目的の酵素の活性部位に関する情報と、配列上の活性残基の位置が表示されます。
description: The Catalytic Site Atlas (CSA) is a database that carries information on the active sites and catalytic residues of enzymes. This database contains manual notes produced during a study of applicable literature as well as a number of homologues obtained after applying a number of sequence comparison methods. A search option is available in which a PDB ID, UniProtKB ID or E.C. number may be entered to retrieve the information that is sought. The data provided by this repository may be downloaded in the form of a set of applicable MySQL tables. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681376
distribution: Distribution
  description: help.php
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/thornton-srv/databases/CSA/Downloads.php
landing page: http://www.ebi.ac.uk/thornton-srv/databases/CSA/
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00033
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-07-09
source: Integbio Database Catalog
primary topic: Codon Usage Database

nbdc00033
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-03
source: Integbio Database Catalog
primary topic: Codon Usage Database

Codon Usage Database
type: Dataset
description: 各生物種のコドン使用頻度を収集しているデータベースです。生物種ごとに、各タンパク質をコードする遺伝子から算出されるコドン使用回数を集計し、千分率で表示しています。GC含量も掲載されています。 CUTG (Codon Usage Tabulated from GenBank：ftp://ftp.kazusa.or.jp/pub/codon/current/) を拡張したウェブバージョンです。
description: The Codon Usage Database is an extended web-based version of CUTG (Codon Usage Tabulated from GenBank) and is used for exploration of codon usage within various organisms, chloroplast, and mitochondria. The database captures data from the NCBI-GenBank for 3,027,973 complete protein coding genes from 35,799 organisms. Users can search the database by organism with data expressed in tabular form: codon, frequency per 1000, number. In addition, the table can be modified to include the amino acid encoded by the codon. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592250
distribution: Distribution
  description: README
  access URL: ftp://ftp.kazusa.or.jp/pub/codon/current/
landing page: http://www.kazusa.or.jp/codon/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0001
status: Active @en
status: 稼動中

nbdc00034
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: CyanoBase

nbdc00034
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: CyanoBase

CyanoBase
type: Dataset
alternative: Genome database for Cyanobacteria
description: 財団法人かずさDNA研究所で全ゲノム配列決定したシアノバクテリアを含む、シアノバクテリア、緑色硫黄細菌、紅色非硫黄細菌の全ゲノム配列解析結果を収録しています。2017年にリリースされた新バージョンでは370を超える種が収録されています。ゲノム配列、染色体マップ、遺伝子アノテーション、遺伝子機能カテゴリ、文献、公共データベースのリンク等が閲覧できます。各エントリのAPIの項目からは、その生物の様々なデータがダウンロードできます。
description: CyanoBase combines sequence data, NCBI taxonomy and KEGG genome information with social genome annotation and features derived from UniProt for 39 species of Cyanobacteria. Links to BLAST and KazusaMart allow users to search for related genes and genomes. Users can also explore curated Cyanobacteria mutant information, as well as global proteome, interactome, and transcriptome relationships. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592184
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24275496
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19880388
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399802
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847144
references: http://rdf.ncbi.nlm.nih.gov/pubmed/27899668
landing page: http://dev-genome.annotation.jp/cyanobase
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1117
status: Active @en
status: 稼動中

nbdc00035
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CYORF

nbdc00035
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CYORF

CYORF
type: Dataset
alternative: Cyanobacteria Gene Annotation Database
description: らん藻遺伝子に関する全世界の研究者の知識を集約した「コミュニティデータベース」です。らん藻の１種であるSynechocystis sp. PCC6803 の全ゲノム配列は1996年にかずさDNA研究所により決定され、その後、配列決定時には未知であった遺伝子機能が続々と解明されました。しかしながら、その情報は学術雑誌に出版され、PubMed データベースに登録されてはいても、配列データベースに全く反映されておらず、ゲノム解析やネットワーク解析に全く利用できない状況でした。そこで、らん藻遺伝子の機能アノテーションを目的としたデータベースを構築し、らん藻DNA チップコンソーシアムのメンバーを中心に我が国の多くのらん藻研究者と共同作業を行いました。Synechocystis ゲノム中に含まれるすべての遺伝子アノテーションを見直し、その1/3にあたる約1000の遺伝子について最新の情報をもとに再アノテーションを行いました。CYORF にはかずさが決定した他のらん藻ゲノムも含まれ、今後は米国などで決定されている多くのらん藻ゲノムも追加し、各らん藻の比較解析ができるようなシステムになっています。
description: CYORF is an interactive community database that allows registered users to both access and annotate available cyanobacteria genome data. The database provides reliable information regarding experimental data, sequences, and gene functions with corresponding citations. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17211581
landing page: http://cyano.genome.jp/
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1117
status: Active @en
status: 稼動中

nbdc00036
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-12-12
source: Integbio Database Catalog
primary topic: D-HaploDB（アーカイブ）

nbdc00036
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-12-12
source: Integbio Database Catalog
primary topic: D-HaploDB（アーカイブ）

D-HaploDB（アーカイブ）
type: Dataset
title: D-HaploDB (Archive) @en
alternative: Definitive Haplotype Database
description: 全胞状奇胎を用いて直接決定した日本人ゲノムのハプロタイプおよび連鎖不平衡構造をゲノムブラウザー上に表示します。 九州大学生体防御医学研究所によるオリジナルサイト（http: //orca.gen.kyushu-u.ac.jp/）の運用は終了しました。引き続き生命科学系データベースアーカイブからD-HaploDBをご利用いただけます。
description: D-HaploDB is a database of genome-wide definitive haplotypes that allows users to view SNP alleles, LD bins, and CNVs by sequence name, gene name, locus, or other landmark search query, with 1.7 million SNPs and 2,339 CNVRs determined with high-throughput array-based oligonucleotide hybridization techniques. The advantages of this technique include: 1. Haplotypes can be read directly from genotyping 2. CNVSs can be detected with higher signal-to-noise ratio 3. Heterozygous sites of overlapping CNVSs do not need to be resolved. @en
language: ja
language: en
publisher: 九州大学 生体防御医学研究所
  type: Organization
  label: Kyushu University Medical Institute of Bioregulation @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20537301
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19424418
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17166862
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16251461
landing page: http://dbarchive.biosciencedbc.jp/en/dhaplodb/desc.html
landing page: http://dbarchive.biosciencedbc.jp/jp/dhaplodb/desc.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00037
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: Database of Genomic Variants

nbdc00037
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: Database of Genomic Variants

Database of Genomic Variants
type: Dataset
alternative: A curated catalogue of structural variation in the human genome @en
description: ヒトゲノムにおける構造多型を包括的にまとめたデータベースです。2005年に世界の5つの研究機関、企業が国際コンソーシアム（ヒトゲノム構造多型コンソーシアム）を結成し、多様な人種におけるコピー多型の全容を解明するプロジェクトを実施しました。その成果を本データベースで公開しています。プロジェクトの結果、約360Mbp、ヒトゲノムの12％以上という、従来考えられていたよりもはるかに広い領域にコピー数多型が見られ、これまで知られていたSNP に加えて新たな個人間のゲノムの多様性を生み出している可能性が示されました。様々な疾患、薬剤感受性に関連するものを含め約3000個の遺伝子が含まれており、いわゆる染色体異常をともなう先天性疾患だけではなく、生活習慣病、自己免疫疾患といったcommon disease（ありふれた病気）を含むヒト形質の個人差に広く寄与している可能性が示されました。
description: Database of Genomic Variants is a repository that provides information about variations in structure in the human genome. The database offers information on genomic changes in DNA segments larger than 1kb as well as annotated insertion/deletion variations in a range of 100bp to 1kb. Only healthy samples were studied, which makes the results very useful to apply as controls in future related studies. The collection contains 101,923 entries. The number of CNVs identified is 6,6741 and inversions are 953. There were 34,229 InDels in the 100bp to 1kb range. Data concerning whole chromosomes can be retrieved. Keyword and Blast search options are also provided. @en
language: en
publisher: The Centre for Applied Genomics
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15286789
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17124402
distribution: Distribution
  access URL: http://dgv.tcag.ca/dgv/app/downloads
landing page: http://dgv.tcag.ca/
theme: T0021
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00038
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Database of the RNAi phenotypes for the 168 genes analyzed

nbdc00038
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Database of the RNAi phenotypes for the 168 genes analyzed

Database of the RNAi phenotypes for the 168 genes analyzed
type: Dataset
description: 生殖細胞 (germ cell) は種の保存に必須である重要な細胞であるだけでなく、減数分裂という特殊な分裂形式を持ち、全能性や無限増殖能を秘めている極めて興味深い細胞です。しかしながら、生殖細胞の形成過程には多くの研究にも関わらず、未知の点が多く残されています。私たちは逆遺伝学を用いて、生殖細胞形成に関わる遺伝子を効率よく検索するアプローチを試みています。 cDNAプロジェクトによって得られた約7500のcDNAのうちから、生殖腺 (gonad) に特異的に発現する遺伝子約300を同定しました。これらのうち168について、RNAi法と呼ばれる逆遺伝学の手法によって線虫でその遺伝子の機能を阻害し、どのような異常が出るかを調べました。この結果、生殖細胞形成に必要な15の遺伝子を同定しました。胚致死等、不妊以外の表現型が認められたものは26ありました。
description: This database comprises 168 Caenorhabditis elegans genes compiled to help users identify phenotypes affecting germline development. Each gene displayed a significantly stronger signal by differential hybridization than a forward-substracted cDNA pool enriched for cDNA derived from meiotic nuclei. Several clones have shown sterility phenotypes as assessed by RNAi analysis. @en
language: en
publisher: 東京大学
  type: Organization
  label: The University of Tokyo @en
  address country: Japan @en
  address country: 日本
landing page: http://park.itc.u-tokyo.ac.jp/mgrl/germline/
theme: T0016
theme: T0024
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: T0002
status: Active @en
status: 稼動中

nbdc00039
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: PRINTS

nbdc00039
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PRINTS

PRINTS
type: Dataset
description: タンパク質のフィンガープリントを提供しているサイトです。Accession番号やPRINTS code、配列情報などで検索することが可能です。立体構造へのリンクや生物種間の配列比較を行うためのマルチプルアラインメントを閲覧することができます。
description: PRINTS Version 42.0 is a collection of motifs called 'fingerprints', because they are applied to define the character of protein families. To obtain these protein fingerprints the SWISS-PROT and TrEMBL databases were scanned repetitively. The motifs are usually located on the protein sequence as separate, but consecutive units with no overlaps. They are more effective in encoding protein folds and determining their function than are single motifs. The database contains 2,156 fingerprints and 12,444 single motifs. This repository can be search by means of entering an accession number, a PRINTS code, a database code, a sequence or by making use of the provided keyword search option. A Blast sequence search option as well as a BLOCKS search option is provided. This database was created on 2 February 2012. @en
language: en
publisher: The university of Manchester
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7971946
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7937065
references: http://rdf.ncbi.nlm.nih.gov/pubmed/2330366
landing page: http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/index.php
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00040
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBGET Search

nbdc00040
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DBGET Search

DBGET Search
type: Dataset
description: ゲノムネットのバックボーンとなる検索システムです。KEGGデータベース群をはじめ、ゲノムネットで公開しているデータベースを統合検索できる窓口です。
description: DBGET is an integrated system to help users search across an assemblage of major biological databases. The biological databases included are classified into five categories: 1. KEGG databases 2. Other DBGET databases 3. Searchable databases 4. Link-only databases 5. PubMed databases Searches can encompass a specific database, database category, or include all available databases. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9697222
landing page: http://www.genome.jp/dbget/
theme: T0031
status: Active @en
status: 稼動中

nbdc00041
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-10
source: Integbio Database Catalog
primary topic: dbProP

nbdc00041
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-10
source: Integbio Database Catalog
primary topic: dbProP

dbProP
type: Dataset
alternative: a Protein Polymorphism database
description: 蛋白質多様性に着目する生物学研究を支援するために、蛋白質コード領域に見出されるアミノ酸変化多型と可変的スプライシングの情報を提供します。ここでは蛋白質多型の概念を遺伝的多型だけではなく、スプライシング変化による多型にまで拡張して扱っています。そのため、領域SNPsだけでなくalternatively-spliced transcripts 情報 も収集・提供しています。
description: dbProP is a database for supporting research on protein polymophisms. It provides information on amino acid polymorphisms and splicing variants found in protein coding region. dbProP has collected all kind of polymorphisms that cause amino acid substitution thoroughly. It also contains data for SNPs candidates and splicing variants predicted from transcription sequence clusters. It allows to retrieve data with a variety of criteria such as gene name, protein motif, Unigene ID, gene database registration number, position on chromosome, absolute base range from a marker and source tissue. @en
language: ja
language: en
publisher: 国立研究開発法人放射線医学総合研究所
  type: Organization
  label: National Institute of Radiological Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://dbprop.nirs.qst.go.jp/Prop/index_e.html
landing page: http://dbprop.nirs.qst.go.jp/Prop/index.html
theme: T0021
theme: T0007
theme: T0003
status: 休止
status: Inactive @en

nbdc00042
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-02-16
source: Integbio Database Catalog
primary topic: dbQSNP（アーカイブ）

nbdc00042
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-16
source: Integbio Database Catalog
primary topic: dbQSNP（アーカイブ）

dbQSNP（アーカイブ）
type: Dataset
title: dbQSNP (Archive) @en
alternative: SNPs in the transcriptional promoter regions in human
description: dbQSNP is a database of SNPs to help users characterize regulatory mechanisms of genes with medical importance. The database collects and presents experimental data of SNP sequences and allele frequencies in the promoter regions by SSCP analysis. dbQSNP records can be easily searched by a BLAST-search against STS sequences found in the database or by keyword or chromosomal location. @en
description: 遺伝子発現に影響を及ぼす多型のリソースとして、日本人検体を用いて転写開始点周辺のSNPを探索し、その結果を公開しています。遺伝子のプロモータ領域（主としてTSSより1.0K上流および0.2K下流まで）に存在するSNPについて、配列情報やアレル頻度情報を掲載しています。SNPのタイピングと定量化は、独自に開発した定量SSCP解析によるものです。 九州大学生体防御医学研究所によるオリジナルサイト（http:// qsnp.gen.kyushu-u.ac.jp/）の運用は終了しました。dbQSNPのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
language: en
publisher: 九州大学 生体防御医学研究所
  type: Organization
  label: Kyushu University Medical Institute of Bioregulation @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15977179
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12449392
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9371745
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12491901
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11083945
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11242937
references: http://rdf.ncbi.nlm.nih.gov/pubmed/2687159
distribution: Distribution
  description: README e.html
  description: README.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/en/dbqsnp/download.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/dbqsnp/download.html
landing page: https://dbarchive.biosciencedbc.jp/en/dbqsnp/desc.html
landing page: https://dbarchive.biosciencedbc.jp/jp/dbqsnp/desc.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00043
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBTBS

nbdc00043
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DBTBS

DBTBS
type: Dataset
alternative: A database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
description: 枯草菌の転写因子と結合サイト、遺伝子の制御関係を収集したデータベースです。947件の論文を情報源として、実験的に検証された120の結合因子と1475件の制御関係を収録しています。
description: The DBTBS database consists of experimentally validated data for Bacillus subtilis regulated genes and transcription factors to help users elucidate complete gene regulatory networks. Search tools allow exploration of intergenic conservation with homologous genes from Gram-positive bacteria and locations of specific motif sequences within the B. subtilis genome. @en
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681362
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17962296
landing page: http://dbtbs.hgc.jp/
theme: T0021
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
status: Active @en
status: 稼動中

nbdc00044
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBTGR

nbdc00044
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DBTGR

DBTGR
type: Dataset
alternative: Database of Tunicate Gene Regulation @en
description: DBTGR collects information on tunicate gene regulation, including experimental data, reported gene activities, and identified regulatory elements present in promoter sequences. Users can search by organism name, tissue type, specific transcription factor, identified gene, or a genome region, to build an understanding of the regulatory systems underlying the developmental and physiological processes of vertebrates. @en
description: ホヤ等の被嚢類の転写制御の情報を、文献より抽出したデータベースです。実験情報、遺伝子発現の局在、結合配列、プロモータ領域、文献情報などが収録されています。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381930
landing page: http://dbtgr.hgc.jp/
theme: T0021
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7718
theme: T0030
status: Active @en
status: 稼動中

nbdc00045
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBTSS

nbdc00045
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DBTSS

DBTSS
type: Dataset
alternative: Database of Transcriptional Start Sites @en
description: DBTSS provides precise positional information for transcription start sites (TSSs) of eukaryotic mRNAs. One characteristic of DBTSS is coverage of TSS information on a major part of human adult and embryonic tissues. To identify single nucleotide variations (SNVs) in the regulatory regions, TSS information are associated with public and original SNVs data. For example, this database includes RNA-seq data of subcellular-fractionated RNAs, ChIP Seq data of histone modifications and binding sites of RNA polymerase II / several transcription factors in cultured cell lines. @en
description: ヒト、マウス、その他の真核生物の正確な転写開始点を収録したデータベースです。mRNA 5'端に存在するキャップ構造を特異的に選別するオリゴキャッピング法を用いて取得した最新の完全長cDNA配列と、その配列から明らかになった転写開始点およびプロモーター領域の情報を公開しています。ゲノムビューワ上に、オリゴキャッピング法で同定されたcDNA領域、RefSeqやEnsemblで公開されている転写開始点、CpGアイランド、SNP位置が表示されます。
language: ja
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21372179
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17942421
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19910371
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752328
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19237398
landing page: http://dbtss.hgc.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/45157
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0005
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9541
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0003
status: Active @en
status: 稼動中

nbdc00046
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-02-26
source: Integbio Database Catalog
primary topic: DDBJ

nbdc00046
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-26
source: Integbio Database Catalog
primary topic: DDBJ

DDBJ
type: Dataset
alternative: DNA Data Bank of Japan @en
description: DDBJ, which is organized by NIG (National Institute of genetics), is one of the three databanks that constitute International Nucleotide Sequence Database (INSD). DDBJ shares new and updated data with EMBL and GenBank at any given moment, and Japanese researchers submit 99% of INSD data through DDBJ. It privides sequence data search systems such as getentry, ARSA, TXSearch and BLAST. Phylogenetic analysis is also available on the web by using sequence alignment program; ClustalW. @en
description: 欧州と米国の対応機関（EBIとNCBI）と密接に関係しながら、DDBJ/EMBL/GenBank国際塩基配列データベースを構築している三大国際データバンクのひとつです。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生命情報・DDBJ研究センター
  type: Organization
  label: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21062814
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24194602
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18927114
distribution: Distribution
  rights: policies.html
  rights: policies-e.html
  access URL: ftp://ftp.ddbj.nig.ac.jp/
landing page: https://www.ddbj.nig.ac.jp/index-e.html
landing page: https://www.ddbj.nig.ac.jp/index.html
theme: T0021
theme: T0001
theme: T0005
theme: T0006
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00047
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DeinoBase

nbdc00047
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: DeinoBase

DeinoBase
type: Dataset
alternative: Deinococci Genome Database
description: The DeinoBase database annotates open reading frames within the Deinococcus radiodurans genome to help users discover new DNA repair genes and gain a better understanding of the molecular basis for resistance to DNA damage. An additional goal of DeinoBase is to sequence whole genomes of other Deinococcus bacterial species for comparative genomics analyses. @en
description: 放射線耐性菌(Deinococcus) について、DNA修復関連タンパク質のアミノ酸配列、ゲノム上の位置、相互作用の情報が公開されています。ORFのアノテーションに注力しています。サイトでは、データベースに対してprotein/ORF searchやFasta searchを行うことが可能です。
language: en
publisher: 国立研究開発法人日本原子力研究開発機構
  type: Organization
  label: Japan Atomic Energy Agency @en
  address country: Japan @en
  address country: 日本
landing page: http://yayoi.kansai.jaea.go.jp/php/DeinoBase/index.php
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1298
theme: T0001
theme: T0007
status: 休止
status: Inactive @en

nbdc00048
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: DGRC

nbdc00048
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-16
source: Integbio Database Catalog
primary topic: DGRC

DGRC
type: Dataset
alternative: Drosophila Genetic Resource Center
description: 「DGRC」はショウジョウバエ系統の統合検索システムです。現在のところ、ナショナル・バイオリソース・プロジェクト「ショウジョウバエ」の事業担当機関（京都工芸繊維大学、国立遺伝学研究所、愛媛大学、杏林大学）で保存されている系統を一括して検索ができるようにしたデータベースです。検索には遺伝子型、細胞学的位置、種名などの項目が利用可能で、検索後、各系統維持機関への提供依頼もできます。
description: DGRC is the integrated retrieval system for Drosophila strains collected and maintained by NBRP 'Drosophila'. DGRC provides strain search system to input information such as genotypes, cytolocations, names of a species and phenotypes. This database also supplies chromosome maps that strains are mapped. Requests for Drosophila strains are available by using online contact form. @en
language: ja
language: en
publisher: 京都工芸繊維大学 ショウジョウバエ遺伝資源センター
  type: Organization
  label: Kyoto Institute of Technology Drosophila Genetic Resource Center @en
  address country: Japan @en
  address country: 日本
landing page: http://fruitfly.jp/flystock/index_e.html
landing page: http://fruitfly.jp/flystock/index_j.html
theme: T0014
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7215
theme: T0021
theme: T0017
status: Active @en
status: 稼動中

nbdc00049
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DIP

nbdc00049
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DIP

DIP
type: Dataset
alternative: Database of Interacting Proteins
description: The DIP is a database of experimentally determined interactions between proteins. It contains protein pairs that are known to bind with each other at two amino acid chains. Each entry is curated, both, manually by expert curators and also automatically using computational approaches that utilize the the knowledge about the protein-protein interaction networks extracted from the most reliable, core subset of the DIP data. Each protein participating in a DIP interaction cross-references to, at least, one of the major protein databases - PIR, SWISSPROT and/or GENBANK. This database can be searched with node, BLAST, or text searches. @en
description: Yeast two-hybrid等の生化学実験によって決定されたタンパク質間相互作用のデータベースです。相互作用するタンパク質の情報の他に、相互作用マップを提供しています。相互作用マップでは、相互作用の信頼度によりエッジが色分けされています。
language: en
publisher: University of California
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125102
references: http://rdf.ncbi.nlm.nih.gov/pubmed/1175232
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681454
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592249
distribution: Distribution
  description: http://dip.doe-mbi.ucla.edu/dip/Guide.cgi?SM=0:24
  description: http://dip.doe-mbi.ucla.edu/dip/Guide.cgi?SM=0:4
  description: http://dip.doe-mbi.ucla.edu/dip/Guide.cgi?SM=0:3
  description: user
  rights: Main.cgi
  access URL: http://dip.doe-mbi.ucla.edu/dip/Download.cgi
landing page: http://dip.doe-mbi.ucla.edu/dip/Main.cgi
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/210
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00050
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DOGAN

nbdc00050
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-16
source: Integbio Database Catalog
primary topic: DOGAN

DOGAN
type: Dataset
alternative: a genome database of microorganisms sequenced at NITE
description: This is a database containing genomic information of 29 microorganisms. Sequencing of these microorganisms (2 Eukaryota, 4 Archaea and 23 Bacteria) was done by the National Institute of Technology and Evaluation (NITE) Full text, Advanced, Blast and Sequence searches are enabled. Genome data may be downloaded via FTP, but the site administrators request feedback outlining the work the information was used for in order for them to improve the database. All relevant posters, publications and patents acquired using information from this site have to clearly state that NITE is the source of information displayed. @en
description: NITEでゲノム解析した微生物のゲノムデータベースです。テキストと写真による詳細な菌株情報、塩基配列データ、ORFなどの遺伝子情報、遺伝子地図、プロテオーム解析結果を公開しています。これらの情報は、アノテーターによって確認されたものであり、時間の経過に即して再アノテーションも行っています。Blastを用いた相同性検索も行えます。
language: en
publisher: 独立行政法人製品評価技術基盤機構
  type: Organization
  label: National Institute of Technology and Evaluation @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: top
  access URL: http://www.bio.nite.go.jp/dogan/data_download/view
landing page: http://www.bio.nite.go.jp/dogan/Top
landing page: http://www.bio.nite.go.jp/dogan/top
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/272557
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/196620
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/510516
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/693746
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/279808
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/358681
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/639282
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/70601
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/378753
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/926569
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/273063
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2066
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/511051
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/234621
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/452662
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/696747
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/196164
theme: T0017
theme: T0018
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/627192
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/304371
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/718274
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/379066
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/632772
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/158879
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/721032
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1032480
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/573370
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/227882
theme: T0030
status: Active @en
status: 稼動中

nbdc00051
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-04-25
source: Integbio Database Catalog
primary topic: eF-site

nbdc00051
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-22
source: Integbio Database Catalog
primary topic: eF-site

eF-site
type: Dataset
alternative: electrostatic surface of Functional-site
description: タンパク質の分子表面に関するデータベースで、分子認識機構の分析に有用な情報を提供しています。Protein Data Bankの構造について、静電的ポテンシャルと疎水的性質を活性部位のコノリー表面と合わせて表示しています。 PDBj (http://integbio.jp/dbcatalog/record/nbdc00157) が提供するサービスの１つです。
description: eF-site is a database of molecular surfaces and electrostatic potentials for structures in the PDB that allows users to identify active sites and predict molecular recognition mechanisms to infer protein function. The molecular surfaces, with both electrostatic and hydrophobic properties, can be calculated for individual protein subunits, protein complexes, and/or dsDNA in protein-DNA complexes. @en
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15689509
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14871866
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12876308
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12876312
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12836670
references: http://rdf.ncbi.nlm.nih.gov/pubmed/6879170
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12831893
distribution: Distribution
  description: tools.html
  access URL: http://service.pdbj.org/eF-site/tools.html
landing page: http://service.pdbj.org/eF-site/
theme: T0021
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00052
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EGTC

nbdc00052
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EGTC

EGTC
type: Dataset
alternative: Database for the Exchangeable Gene Trap Clones
description: 熊本大学発生医学研究センター臓器形成分野で作製した可変型遺伝子トラップクローンのデータベースです。トラップした遺伝子に関する情報や5'-RACE法による同定情報、トラップクローンから樹立したマウス系統情報を掲載しています。各エントリーには、マウスゲノム上の位置、染色体番号、遺伝子名、トラップベクターおよび細胞株、5'-RACE法による塩基配列、ホモロジー検索結果、樹立マウスの情報、各種外部公共データベースへのリンクが含まれています。
description: EGTC is a mouse gene trap resource which allows users to find information on cell lines and mice with targeted genetic exchanges of over 1000 genes. Analysis is either via gene replacement or knockout techniques, and is geared toward developmentally relevant genes. @en
language: en
publisher: 熊本大学 生命資源研究・支援センター
  type: Organization
  label: Kumamoto University Institute of Resource Development and Analysis @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19199955
landing page: http://egtc.jp/action/main/index
theme: T0014
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0005
theme: T0013
theme: T0017
theme: T0021
status: Active @en
status: 稼動中

nbdc00053
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EMBL-Bank

nbdc00053
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EMBL-Bank

EMBL-Bank
type: Dataset
alternative: EMBL Nucleotide Sequence Database @en
description: The European Nucleotide Archive (ENA) is a database that contains information about the structure and layout of nucleotide sequencing experiments. The content of such a workflow covers the input data, the data the machine delivers and the interpreted results. Text search and sequence search option are provided. ENA data can be downloaded through the ENA Browser in a variety of data formats. @en
description: 欧州の核酸配列レポジトリで、個々の研究者やゲノム配列決定プロジェクトから提供される配列データの登録と配布を行っています。GenBank(米国), DDBJ(日本)と国際的なコラボレーションを行っています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18978013
distribution: Distribution
  description: formats
  description: terms-of-use
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/ena/browse/download
landing page: http://www.ebi.ac.uk/embl/
theme: T0021
theme: T0001
theme: T0005
theme: T0006
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00054
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: Ensembl

nbdc00054
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: Ensembl

Ensembl
type: Dataset
description: ENSEMBL is a collection of automatically annotated genome databases for vertebrates and a number of eukaryotes, integrated with all other relevant biological data available. The repository covers data on gene annotation, microarray probeset mapping and comparative genomics among many other topics. Information may be downloaded by a variety of means: For small amounts of data, an export option is suggested. For larger amounts of data, an FTP site is provided from where a complete database may be downloaded in one of various formats, from flat files to MySQL dumps. @en
description: ゲノム解読された脊椎生物およびその他の主要な真核生物を対象として自動アノテーションを行い、その結果をゲノムビューワやデータベースとして公開しているプロジェクトです。EMBL-EBIとSanger Centreが共同で進めています。
language: en
publisher: Wellcome Trust Sanger Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/28365736
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752248
distribution: Distribution
  description: index.html
  rights: disclaimer.html
  access URL: http://asia.ensembl.org/info/data/ftp/index.html
  access URL: http://asia.ensembl.org/info/data/ftp/
landing page: http://uswest.ensembl.org/index.html
theme: T0021
theme: T0001
status: Active @en
status: 稼動中

nbdc00055
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: Search NCBI databases

nbdc00055
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: Search NCBI databases

Search NCBI databases
type: Dataset
description: PubMed、核酸、アミノ酸配列、発現データ、PubChem (生化学的な働きをする小分子)、タンパク質構造、解読が完了したゲノム、TaxonomyといったNCBIの主要な30以上ものデータベースに対して、テキストベースで統合的に検索できる情報抽出システムです。 また、データベース内の関連するレコードへのリンクや、そのレコードから他のデータベースへのリンク情報も提供しています。
description: This search engine combs for information from over 30 major databases at NCBI, including PubMed, nucleic acids, amino acid sequences, expression data, PubChem (small molecules with biochemical functions), protein structure, sequenced genomes, and taxonomy. The search engine provides links to the search results, as well as to other related databases. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: https://www.ncbi.nlm.nih.gov/search/
theme: T0015
theme: T0031
theme: T0001
theme: T0007
theme: T0027
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00056
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ENU Mutants (A large Scale Mutagenesis Project in Riken GSC)

nbdc00056
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: ENU Mutants (A large Scale Mutagenesis Project in Riken GSC)

ENU Mutants (A large Scale Mutagenesis Project in Riken GSC)
type: Dataset
description: The ENU mutants allows users to find mutant mouse lines. The program has performed a large-scale mutagenesis and screened several mice, categorized by morphological and behavioral phenotypes. Phenotypes can be searched by experiment or keyword and mutants can be ordered. An Oracle-based mutagenesis database is also available. @en
description: 理研GSC ENU誘発による大規模マウス突然変異体作製プロジェクトにおいて作製されたマウスラインと関連リソースを検索できます。プロトコルやプロジェクト情報も掲載されています。
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.brc.riken.jp/lab/gsc/mouse/
theme: T0014
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
theme: T0018
theme: T0030
status: Active @en
status: 稼動中

nbdc00057
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: eProtS

nbdc00057
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: eProtS

eProtS
type: Dataset
alternative: Encyclopedia of Protein Structures @en
description: eProtS（タンパク質構造百科事典）は、生物学的に重要なタンパク質を選び、その立体構造を表示するとともに、タンパク質の構造と機能についてわかりやすく解説したものです。日本語版と英語版を用意しています。
description: eProtS is a dictionary about protein molecules that are particularly important for biology with images of the protein three-dimensional structures. eProtS aims to support understanding the structures and the biological functions of proteins for non-specialists of protein structures. Proteins are classified according to the original (old version) eProtS, biological (cellular) functions or biochemical functions. This website also provides information about species, biological context, structure description, links to PDB entries and links to references. @en
language: ja
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
landing page: http://www.pdbj.org/eprots/index_ja.cgi
landing page: http://www.pdbj.org/eprots/index_en.cgi
theme: T0022
theme: T0007
theme: T0030
status: Active @en
status: 稼動中

nbdc00058
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Escherichia coli O157:H7 Sakai

nbdc00058
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Escherichia coli O157:H7 Sakai

Escherichia coli O157:H7 Sakai
type: Dataset
description: 腸管出血性大腸菌 O157:H7 Sakai株のゲノム情報データベースです。染色体やプラスミドの種々の情報検索や、関連論文の検索が利用できます。
description: This database provides a comprehensive resource about the E. coli O157:H7 Sakai genome, including a species-specific BLAST function, ORF, gene, rRNA, and tRNA location lists, O157:H7 Sakai plasmid sequences, comparative genomics, and an FTP system for bulk data download. @en
language: en
publisher: 東京工業大学 大学院生命理工学研究科
  type: Organization
  label: Tokyo Institute of Technology Graduate School of Bioscience and Biotechnology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10734605
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11597449
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11108008
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11258796
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11111050
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10691128
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12481030
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9628576
landing page: http://genome.bio.titech.ac.jp/bacteria/o157/index.html
theme: T0021
theme: T0001
theme: T0007
theme: T0005
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/386585
status: 休止
status: Inactive @en

nbdc00059
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ECGB

nbdc00059
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-24
source: Integbio Database Catalog
primary topic: ECGB

ECGB
type: Dataset
alternative: Eukaryotic Comparative Genome Browser @en
alternative: Eukaryotic Comparative Genome Browser (真核生物比較ゲノムブラウザ)
description: この比較ゲノムブラウザでは、ヒトやチンパンジー、マウス、ラットなどの真核生物の比較ゲノミクス解析の結果を提供しています。比較ゲノミクス解析は、新規遺伝子の発見や、ゲノム進化についての新しい知見の蓄積に役立つ可能性があります。現在は提供を終了しています。
language: ja
language: en
publisher: 独立行政法人科学技術振興機構
  type: Organization
  label: Japan Science and Technology Agency @en
  address country: Japan @en
  address country: 日本
landing page: http://www-btls.jst.go.jp/ComparativeGenomics/index_j.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0027
theme: T0001
status: 運用終了
status: Closed @en

nbdc00060
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Extremobase

nbdc00060
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Extremobase

Extremobase
type: Dataset
description: 海洋開発研究機構で決定された極限環境微生物のゲノム配列とアノテーションを公開しています。染色体マップ、タンパクコード遺伝子の基本情報、RNAのコドン使用頻度、tRNA、rRNA、挿入配列などが閲覧できます。他の研究機関で解析された極限環境微生物のゲノム情報も掲載されています。
description: Extremobase is a database of genome sequences from various extremophiles. Complete genome sequences are available for seven species, and metagenome sequences are available for three additional conditions. For each sample, descriptive statistics are presented and users can search for ORFs or criteria such as molecular weight or length. Sequence comparison by BLAST is also supported. @en
language: en
publisher: 国立研究開発法人海洋研究開発機構
  type: Organization
  label: Japan Agency for Marine-Earth Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.jamstec.go.jp/gbrowser/cgi-bin/top.cgi
theme: T0021
theme: T0020
theme: T0001
theme: T0006
status: 休止
status: Inactive @en

nbdc00061
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-01-30
source: Integbio Database Catalog
primary topic: EzCatDB

nbdc00061
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: EzCatDB

EzCatDB
type: Dataset
alternative: A Database of Enzyme Catalytic Mechanisms @en
description: The EzCatDB database contains enzyme catalytic mechanisms. Data in the Protein Data Bank (PDB) are analyzed and classified in reference to the literature. Data are then organized and sets of data with enzyme information like E.C. number, information on the annotated ligand and active residues of PDB proteins, and catalytic mechanisms can be searched. There are also links to other databases such as, CATH, KEGG, PubMed, PDBsum, and Swiss-prot. @en
description: Protein Data Bank (PDB)に登録されている酵素の立体構造を情報源として、文献情報などに基づき、酵素触媒機構を階層的に分類しています。各エントリーには、酵素番号(EC number)、PDB番号、触媒部位、リガンド情報、文献情報、触媒機構に関する情報、Swiss-prot, CATH, KEGG等の公共データベースのリンクが含まれています。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17039546
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608227
landing page: http://ezcatdb.cbrc.jp/EzCatDB/
landing page: http://ezcatdb.cbrc.jp/EzCatDB
theme: T0022
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00062
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-10-27
source: Integbio Database Catalog
primary topic: FAMSBASE

nbdc00062
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-03
source: Integbio Database Catalog
primary topic: FAMSBASE

FAMSBASE
type: Dataset
alternative: Protein Structure Model Database
description: 全自動ホモロジーモデリングソフトFAMS (Full Automatic Modeling System) を用いてモデリングされた277生物種のタンパク質構造モデルデータベースです。ヒトや新型インフルエンザタンパク質についてのデータの他、ヒト・ラット・マウスの3種や多様な生物277種から一度に検索できるページもあります。検索には遺伝子ORF、PDB ID、キーワードなどが利用できます。
description: RIKEN FAMSBASE is a genome-wide protein structure model database that contains a large number of protein models from many organisms, including databases human, rat, mouse, and also novel influenza (swine-origin influenza A/H1N1) proteins. It allows searches using gene(ORF) Name, PDB ID, Motif Name or Keywords. @en
language: en
publisher: 中央大学 理工学部
  type: Organization
  label: Department of Biological Sciences, Chuo University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520053
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11021542
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18428727
landing page: http://fams.bio.chuo-u.ac.jp/RIKEN/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10114
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10088
status: 休止
status: Inactive @en

nbdc00064
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: FlyBase

nbdc00064
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: FlyBase

FlyBase
type: Dataset
alternative: A Database of Drosophila Genes & Genomes
description: ショウジョウバエの遺伝情報のデーターベースです。BLASTやGenomeBrowser、分類情報検索やショウジョウバエの成長過程を記録、描画した画像データも含まれています。
description: This database contains genetic information on Drosophila. It allows users to search using BLAST, GenomeBrowser or QuickSearch tool with taxonomical information and image-based data on the life-cycle stages of Drosophila. The information of Drosophila material resources are also provided. @en
language: en
publisher: Genetics Society of America
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7925011
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7937045
references: http://rdf.ncbi.nlm.nih.gov/pubmed/27799470
distribution: Distribution
  description: XML files
  rights: FlyBase Copyright
  access URL: http://flybase.org/static_pages/downloads/bulkdata7.html
landing page: http://flybase.org/
theme: T0014
theme: T0015
theme: T0024
theme: T0026
theme: T0001
theme: T0007
theme: T0027
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7215
theme: T0003
theme: T0021
theme: T0029
theme: T0019
theme: T0002
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00065
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: FlyView

nbdc00065
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: FlyView

FlyView
type: Dataset
alternative: A Drosophila Image Database
description: ショウジョウバエの成長過程や遺伝情報、特に遺伝子発現パターンに関する画像データベースです。ショウジョウバエの主要データベースであるFlyBase (http://integbio.jp/dbcatalog/record/nbdc00064 ) とも互換性を考慮しています。
description: FlyView is an image database of the development and genetics of Drosophila. It specializes in the expression patterns of cloned genes and enhancer trap lines. All images are annotated and these annotations may be entered into a search option to receive additional information. More than 3,700 pictures from 796 enhancer-trap lines are available. Options to search for pattern elements or stocks are present. A complete list of all lines available may also be retrieved. The creators of the database ask for as many contributions as possible to enhance the contents. This site is compatible with the main Drosophila database FlyBase. @en
language: en
publisher: University of Munster
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9441952
landing page: http://flyview.uni-muenster.de/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0024
theme: T0029
theme: T0001
theme: T0013
theme: T0017
status: Active @en
status: 稼動中

nbdc00066
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full Length cDNA

nbdc00066
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full Length cDNA

Full Length cDNA
type: Dataset
description: 完全長ヒトcDNAの配列データベースです。GENBANKフォーマット、FASTAフォーマットそれぞれをダウンロードすることが可能です。
description: This database of cDNA sequences allows users to download human sequences, with different compressed packages of full length or 5'-end single read sequences available. @en
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://cdna.hgc.jp/download.html
landing page: http://cdna.hgc.jp/
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00067
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full-Malaria

nbdc00067
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full-Malaria

Full-Malaria
type: Dataset
alternative: Malaria Full-Length cDNA Database (Plasmodium falciparum) @en
description: ヒトマラリア原虫(2種)、マウスマラリア原虫(2種)の完全長cDNAデータベースです。発現遺伝子の5'端塩基配列をゲノム配列上にマップしています。TBLASTXを用いて、P.falciparumゲノムをテンプレートとするマラリア原虫間のタンパク配列相同性を解析した結果も登録されています。
description: FULL-malaria collects sequence and expression information on the major malaria strain Plasmodia falciparum as well as P. vivax and the murine viruses P. yoelii and P. berghei. Users can search sequences and chromosomes, and data can be downloaded. The site also has a phylogenetic comparison tool for various Plasmodia species and next-generation RNA-sequencing data from field samples, including both viral and human patient expression profiles. @en
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681428
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18987005
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9373149
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16005745
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8125298
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125052
landing page: http://fullmal.hgc.jp/index_ajax.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5855
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5821
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5861
theme: T0027
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
status: Active @en
status: 稼動中

nbdc00068
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full-Toxoplasma

nbdc00068
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full-Toxoplasma

Full-Toxoplasma
type: Dataset
alternative: Toxoplasma Full-Length cDNA Database @en
description: This database features a genome browser for transcriptome analysis of Toxoplasma gondii, with original data produced by the oligo-capping method, namely, full-length cDNA clones and TSS sequences. Also, background information on toxoplasma, the construction of the toxoplasma full-length cDNA library and a BLAST search function are available. The database contains links to other full-length cDNA databases for parasites and anthropods. @en
description: トキソプラズマより全長cDNAクローンを作成し、その解析結果を公開したデータベースです。各クローンのESTはドラフトゲノム配列（コンティグ）にマップされています。
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14987357
landing page: http://fullmal.hgc.jp/index_tg_ajax.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5811
theme: T0002
status: Active @en
status: 稼動中

nbdc00069
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GBIF

nbdc00069
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GBIF

GBIF
type: Dataset
alternative: Global Biodiversity Information Facility free and open access to biodiversity data @en
description: 世界各国の自然史博物館、研究機関、大学などが維持している標本のデータと野生生物の観測のデータを集めたポータルサイトです。
description: GBIF (Global Biodiversity Information Facility) is a database of information on Biodiversity and its global effect. A network of countries across the globe has access to, and participates in supplying, information to the database. There are 38 countries that support the facility financially and are therefore members of the voting governing board. The database contains 396,026,747 indexed records and 10,004 sets of data provided by 464 publishers. It is imperative that the users of any data obtained by means of the GBIF Portal will always give credit to the original data publishers. A keyword search option is provided whereby the facility can be searched for information on a specific group of organisms of a specific country or as displayed in a specific set of data. @en
language: en
publisher: GBIF Secretariat
  type: Organization
  address country: Denmark @en
  address country: デンマーク
landing page: http://www.gbif.org/
theme: T0014
theme: T0019
status: Active @en
status: 稼動中

nbdc00070
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: GDBS（アーカイブ）

nbdc00070
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: GDBS（アーカイブ）

GDBS（アーカイブ）
type: Dataset
title: GDBS (Archive) @en
alternative: Gene Diversity DataBase System
description: 「遺伝子多様性モデル解析事業」において、社団法人バイオ産業情報化コンソーシアム(JBiC)はモデル疾患として選択した幾つかの多因子性疾患に関する遺伝子多型情報等を収集・解析し、疾患の原因となる疾患関連遺伝子を同定するまでの一連の実験・解析フローの確立を目指しました。 同時に、膨大な情報を管理して解析を進めるために必要なデータベースやソフトウェアを構築しました。 産業技術総合研究所のオリジナルサイトからのデータ提供は終了しました。引き続き生命科学系データベースアーカイブからGDBSをご利用いただけます。
description: GDBS is the gene Diversity Data Base System. It provides genetic polymorphism information related to model diseases. This site includes two databases and seven (downloadable) analysis tools. The original site was retired, and it is available in NBDC Life Science Database Archive. @en
language: ja
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16000323
distribution: Distribution
  description: README.html
  rights: lic.html
  access URL: http://dbarchive.biosciencedbc.jp/jp/gdbs/download.html
landing page: http://dbarchive.biosciencedbc.jp/jp/gdbs/desc.html
theme: T0021
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00071
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: GeMDBJ

nbdc00071
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: GeMDBJ

GeMDBJ
type: Dataset
alternative: Genome Medicine Database of Japan @en
description: 疾患ゲノムデータベースは、アルツハイマー病、がん、糖尿病、高血圧、喘息および薬理遺伝学（ファーマコジェネティクス）のためのミレニアム・ゲノム・プロジェクト（MGP)研究グループ（SGMGP）により構築された統合データベースです。特定の臨床・人口統計情報、JSNPやMGPにおいて発見されたものを含めた他のSNPsの多型情報、AffymetrixのGeneChipにより解析された発現プロファイルを公開しています。また、大部分のデータがヒトゲノム配列上に関連付けられ、「ゲノム・ビューア」上で見ることができます。 国立研究開発法人医薬基盤・健康・栄養研究所によるGeMDBJの公開は終了致しました。主なデータは国立がん研究センターの運用するIntegrative Disease Omics Database（iDOx DB）( http://gemdbj.ncc.go.jp/omics/index.html )へ引き継がれます。
description: The Genome Medicine Database of Japan (GeMDBJ) is an integrated database developed by the Study Groups of Millennium Genome Project (MGP), focusing on Alzheimer's disease, Cancer, Diabetes mellitus, Hypertension, Bronchial asthma and Pharmacogenetics (SGMGP). The database provides selected clinical and demographic data, SNPs (including those from JSNP and MGP) and expression profiles analyzed by Affymetrix geneChip. Much of the data is mapped to the human genome and can be visualized using a custom Genome Viewer. The GeMDBJ has now been closed. The main data are available in the Integrative Disease Omics Database（iDOx DB）( http://gemdbj.ncc.go.jp/omics/index.html ). @en
language: ja
language: en
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  label: National Institutes of Biomedical Innovation, Health and Nutrition @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20507324
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20121473
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19507519
distribution: Distribution
  rights: TermOfUse.jsp
  access URL: https://gemdbj.nibio.go.jp/dgdb/DownloadSite.do
landing page: https://gemdbj.nibio.go.jp/dgdb/index.do
theme: T0021
theme: T0015
theme: T0024
theme: T0029
theme: T0001
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: 運用終了
status: Closed @en

nbdc00072
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GENA

nbdc00072
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GENA

GENA
type: Dataset
alternative: Gene Name Dictionary
description: This site contains a dictionary of gene names (GENA). The dictionary can be searched for a gene, family or compound in the genome of one of 7 species, of which Homo sapiens is one. @en
description: 遺伝子と遺伝子産物の正式名、シンボル（記号）、同義語を容易に見つけることができるデータベースです。データは、HUGO、OMIM、Genatlas、LocusLink、GDB、MGI、FlyBase、WormBase、CYGD、SGDから自動的に抽出されたものです。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
landing page: http://gena.ontology.hgc.jp:8081/search/servlet/gena
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0019
theme: T0007
status: 休止
status: Inactive @en

nbdc00073
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Gene - NCBI

nbdc00073
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Gene - NCBI

Gene - NCBI
type: Dataset
description: The gene database provides information on gene sequence, structure, location, and function for annotated genes from the NCBI database. Users can search by accession ID or keyword, compare and identify sequences using BLAST, or submit references into function (RIFs) based on experimental results. Bulk download and an update mailing list are available. @en
description: 生物種別の遺伝子単位でエントリーを構成しており、NCBIの様々なデータベースを統合的に利用して遺伝子情報を掲載しています。染色体上の位置、配列、発現、構造、機能、ホモロジーデータのような遺伝子をベースとした情報を提供しています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21115458
distribution: Distribution
  rights: disclaimer.html
  access URL: ftp://ftp.ncbi.nih.gov/gene/
landing page: http://www.ncbi.nlm.nih.gov/gene
theme: T0021
theme: T0001
status: Active @en
status: 稼動中

nbdc00074
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GO

nbdc00074
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GO

GO
type: Dataset
alternative: Gene Ontology @en
description: GO is a database which provides a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data. It contains data of terms, definitions and ontology structure. The most recent version of the ontology and the annotation files contributed by members of the GO Consortium are available for download. The GO provides the AmiGO browser and search engine which are web browser-based access to the GO database. @en
description: 遺伝子オントロジー（Gene Ontology;GO）とは、生物学的概念を記述するための標準となる語彙を策定しようとするプロジェクトです。GOで定義された用語はGO Termと呼ばれ、Cellular component、Biological process、Molecular functionという3つのカテゴリーに分類されています。GOのデータは、非循環有向グラフ (Directed Acyclic Graph: DAG) と呼ばれるデータ構造を用いて計算機上で記述することができます。 このサイトでは、GO Termや関連ツールの配布を行っています。
language: en
publisher: The GO Consortium
  type: Organization
  address country: Global
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22102568
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19578431
distribution: Distribution
  description: download-mappings
  description: download-ontology
  description: download-annotations
  rights: use-and-license
  access URL: http://www.geneontology.org/page/downloads
landing page: http://www.geneontology.org/
theme: T0001
theme: T0007
theme: T0006
theme: T0019
status: Active @en
status: 稼動中

nbdc00075
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GeneAnnot

nbdc00075
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GeneAnnot

GeneAnnot
type: Dataset
alternative: Microarray Gene Annotation @en
description: AffymetrixのプローブセットHG-U95, HG-U133, HG-U133 Plus2.0のアノテーション情報を提供するデータベースです。プローブセットの情報はGeneCards geneとリンクしており、直接プローブ配列とGenBank, RefSeq, EnsemblのmRNA配列と比較することができるようになっています。
description: geneAnnot Version 2.2 is a database of probe-sets and genes and their relationship to each other. The content of this repository is collected by comparing individual probe sequences with available cDNAs and genes obtained from Ensembl, RefSeq and GenBank. The sequences of transcripts and their positions in the genome are identified with the help of the geneLoc system. Search options by probe-set, gene Symbol or geneCards ID are available. @en
language: en
publisher: Weizmann Institute of Science/Department of Biological
  type: Organization
  address country: Israel @en
  address country: イスラエル
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14725348
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18005434
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14962929
landing page: http://genecards.weizmann.ac.il/geneannot/index.shtml
theme: T0021
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00076
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: GENIES

nbdc00076
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GENIES

GENIES
type: Dataset
alternative: Gene Network Inference Engine based on Supervised Analysis @en
description: マイクロアレイ発現データやゲノム上の位置情報などの多様なデータを統合して、遺伝子の機能ネットワークを推定します。
description: GENIES is used to predict functional associations between genes. The system can be used in a simple mode (default method and parameters) or an advanced mode (selected parameters). After specifying the organism, users can upload data files (tab-delimited text files of 'profile' for each dataset, or a pre-computed 'kernel matrix'). GENIES allows four different outputs: a pathway list, inferred list, search, and details. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11472995
landing page: http://www.genome.jp/tools/genies/
theme: T0026
theme: T0001
status: Active @en
status: 稼動中

nbdc00077
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-25
source: Integbio Database Catalog
primary topic: GenoBase

nbdc00077
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-13
source: Integbio Database Catalog
primary topic: GenoBase

GenoBase
type: Dataset
alternative: Integrated database of E.coli K-12 (W3110)
description: 大腸菌K-12 (W3110)の生細胞システムを包括的に理解するためのデータベースです。大腸菌に関する配列情報、プロテオーム、トランスクリプトームの解析結果、変異株や転写制御に関する文献を収集し、提供している公共リポジトリです。ORFクローンや遺伝子破壊株、欠損株の提供も行っています。
description: GenoBase is a database on the complete system involving the living conditions of Escherichia coli K-12 (W3110). This public repository provides sequence information compiled in ORFs, as well as functions, DNA and amino acid sequences. Proteome and transcriptome information include 2-D protein maps, bioinformatics based on gene-clustering analysis, multivariate analysis of gene functions and gene networks help to infer the function of ORFs and their interrelationships. All available literature on E.coli K-12 has been incorporated here. Keyword Search quickly searches all fields while Search/Clip provides information on gene, position and DNA sequence. @en
language: en
publisher: 奈良先端科学技術大学院大学
  type: Organization
  label: Nara Institute of Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16738554
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16606699
landing page: http://ecoli.naist.jp/GB/
theme: T0021
theme: T0024
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/511145
theme: T0007
theme: T0006
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/316407
theme: T0030
theme: T0001
status: 休止
status: Inactive @en

nbdc00078
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Genome Project of Streptomyces avermitilis

nbdc00078
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Genome Project of Streptomyces avermitilis

Genome Project of Streptomyces avermitilis
type: Dataset
description: 抗寄生虫剤エバーメクチンを生産する放線菌Streptomyces avermitilisの全ゲノム配列と、さまざまなアノテーションが掲載されています。配列情報、物理地図、KEGGパスウェイ解析結果、タンパク質ファミリー、二次代謝産物、種特異的遺伝子、コドン使用頻度、16S rRNAによる系統樹などが表示されます。
description: This is the complete genome sequence of the industrial microorganism Streptomyces avermitilis known for producing avermectins, a group of antiparasitic agents, and also called Streptomyces avermectinius MA-4680T(= NBRC 14893T). Physical maps, KEGG pathway analyses, lineage trees based on 16S rRNA, etc. are also available. @en
language: en
publisher: 北里大学 北里生命科学研究所
  type: Organization
  label: Kitasato University Kitasato Institute for Life Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12692562
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11572948
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12893267
distribution: Distribution
  access URL: http://avermitilis.ls.kitasato-u.ac.jp/download.html
landing page: http://avermitilis.ls.kitasato-u.ac.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33903
theme: T0001
theme: T0007
theme: T0027
theme: T0006
status: Active @en
status: 稼動中

nbdc00079
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GON

nbdc00079
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GON

GON
type: Dataset
alternative: Genomic Object Net Pathway Database
description: GON is a software platform for biological pathway modeling and simulation. It is based on two architectures, hybrid functional Petri net (HFPN) and XML technology. Pathway models of HFPN are also explained in detail. Petri nets provide a method of describing concurrent systems for manufacturing systems and communication protocols and representing biological pathways graphically. Petri Net Pathways includes IL-1,G-protein and TPO signaling pathways as well as a new pathway model of p53 and related genes. @en
description: Genome Object Net (GON) は、生体パスウエイのモデリングやシミュレーションのためのソフトウェアプラットフォームで、hybrid functional Petri net (HFPN)とXML技術を基本としています。本サイトでは、HFPNのパスウエイモデルを詳細な説明情報とともに提供しています。
language: en
publisher: 山口大学 理学部
  type: Organization
  label: Yamaguchi University Faculty of Science @en
  address country: Japan @en
  address country: 日本
landing page: http://genome.ib.sci.yamaguchi-u.ac.jp/~gon/index.html
theme: T0026
theme: T0007
theme: T0013
status: Active @en
status: 稼動中

nbdc00080
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GEO

nbdc00080
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: GEO

GEO
type: Dataset
alternative: Gene Expression Omnibus
description: This is a public data repository of functional genomics data obtained through microarrays and sequencing. Records are carefully examined by experts and standardized to comply with Minimum Information About a Microarray Experiment (MIAME) standards. The data can be searched by sample name, analysis platform, organism, assay details, and keywords. Raw data can also be downloaded from the database. @en
description: マイクロアレイや次世代シーケンサー、メチル化、その他、高スループット実験で得られた機能ゲノムデータを登録、公開、配布しているレポジトリサイトです。登録データの実験情報の記述内容はMIAME（Minimum Information About a Microarray Experiment)形式で統一されており、専門家によって精査されています。サンプル名や解析プラットフォーム名、生物種、実験内容等、各種キーワードで目的のデータを検索することができます。生データの配布も行っています。GEO DataSetsでは、データ投稿者が提供したレコード情報（サンプルやプラットフォーム情報等）とキュレートされたデータセットを提供しており、GEO ProfilesではGEO DataSetsから得られた遺伝子発現プロファイルを提供しています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16888359
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21097893
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18940857
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17160034
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752295
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17099226
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16939800
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608262
distribution: Distribution
  description: datasets.html
  rights: disclaimer.html
  access URL: http://www.ncbi.nlm.nih.gov/geo/info/download.html
landing page: http://www.ncbi.nlm.nih.gov/geo/
theme: T0021
theme: T0024
theme: T0029
theme: T0002
status: Active @en
status: 稼動中

nbdc00081
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GermOnline

nbdc00081
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GermOnline

GermOnline
type: Dataset
description: GermOnline 4 is a unique microarray expression database across various species. It focusses on gametogenesis, mitosis, meiosis and germline development. It contains information on high-throughput expression data collected with geneChips as well as protein-protein interaction data and protein-DNA binding data obtained from in vivo experiments. Sample annotations and genome annotation information are provided. Data on orthologs is also available. The species covered are, among others, Homo sapiens, Mus musculus, Rattus norvegicus and Saccharomyces cereviciae. A keyword search option is offered by entering a gene symbol, a database identification number or the Ensembl identifier into the search field. @en
description: GermOnlineは、生殖系列発生、減数分裂、配偶子形成、有糸分裂細胞周期に着目した異種生物間のマイクロアレイ遺伝子発現データベースです。(1)GeneChipデータ、(2)Multiomics Information Management and Annotation System (MIMAS)を用いたサンプルアノテーション、(3)DNA-タンパク質結合データおよびタンパク質相互作用データ、(4)Ensemblによるゲノムアノテーション情報、(5)EnsemblおよびOrthologs Matrix Project (OMA)のデータを用いて定義したオルソログ情報が含まれています。
language: en
publisher: Universite de Rennes
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21149299
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19450266
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17145711
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681481
distribution: Distribution
  access URL: ftp://ftp.ensembl.org/pub/
landing page: http://www.germonline.org/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0026
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0024
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: Active @en
status: 稼動中

nbdc00082
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: Ghost Database

nbdc00082
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: Ghost Database

Ghost Database
type: Dataset
alternative: Ciona intestinalis genomic and cDNA resources @en
description: カタヤユウレイボヤ（Ciona intestinalis）のゲノムDNAおよびcDNAが登録されています。ゲノムブラウザの利用やBLAST検索の実行、発生ステージごとの遺伝子発現パターンの検索などが可能です。BLAST検索は、ゲノムやEST、ゲノムショットガンリードのデータベースに対して行うことができます。
description: The Ghost database provides genomic DNA and cDNA resources for Ciona intestinalis. genes encoding transcription factors that regulate processes like development can be identified to provide molecular information on complex developmental processes and insight into chordate evolution. Genome Browser and BLAST search for genomes, EST and shotgun reads are provided. @en
language: en
publisher: 京都大学 大学院理学研究科
  type: Organization
  label: Kyoto University Graduate School of Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16252120
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16141696
distribution: Distribution
  rights: download kh.html
  access URL: http://ghost.zool.kyoto-u.ac.jp/download_kh.html
landing page: http://ghost.zool.kyoto-u.ac.jp/SearchGenomekh.html#CDNA
theme: T0014
theme: T0024
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7719
theme: T0002
theme: T0021
status: Active @en
status: 稼動中

nbdc00083
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-02
source: Integbio Database Catalog
primary topic: GIB

nbdc00083
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-02
source: Integbio Database Catalog
primary topic: GIB

GIB
type: Dataset
alternative: Genome Information Broker
description: 既に公開されている微生物ゲノムに対して、付加されている生物学的情報や配列を検索、取得できるデータベースシステムです。古細菌、真正細菌、数種類の真核生物のデータが登録されています。
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752256
landing page: http://gib.genes.nig.ac.jp
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/55529
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/347515
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4930
status: 運用終了
status: Closed @en

nbdc00084
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GiiB-JST mtSNP

nbdc00084
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: GiiB-JST mtSNP

GiiB-JST mtSNP
type: Dataset
alternative: ヒトミトコンドリアゲノム多型データベース (human mitochondrial genome single nucleotide polymorphism database)
alternative: Human Mitochondrial Genome Polymorphism Database @en
description: このデータベースは、ヒトミトコンドリアゲノムの全塩基配列の解析に基づき、ミトコンドリアゲノムに分布する多型と、多型の相互連鎖、疾患との関連、多型の機能的相違に関する総合的情報を提供しています。
description: GiiB was a research and development core institute of biotechnology in Gifu prefecture, and it was closed down in 2012. GiiB-JST mtSNP contains the entire mitochondrial DNA sequences of human and mitochondrial SNPs (mtSNPs) data associated with age-related conditions and energy metabolism. The main content of GiiB-JST mtSNP is information about mtSNPs of individuals belonging to 7 different groups; centenarians, patients with Parkinson's disease, patients with Alzheimer's disease, young obese males, young non-obese males, and type-2 diabetes patients with or without severe vascular involvement. This database provides mtSNP search systems such as alignment programs and secondary-structure prediction data to evaluate the functional differences among sets of mtSNPs. @en
language: ja
language: en
publisher: 岐阜県国際バイオ研究所
  type: Organization
  label: Gifu International Institute of Biotechnology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15466285
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16318308
landing page: http://mtsnp.tmig.or.jp/mtsnp/index_e.shtml
landing page: http://mtsnp.tmig.or.jp/mtsnp/index.shtml
theme: T0021
theme: T0015
theme: T0022
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0013
status: 休止
status: Inactive @en

nbdc00085
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GLIDA

nbdc00085
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GLIDA

GLIDA
type: Dataset
alternative: GPCR-Ligand Database
description: Gタンパク質共役受容体(GPCR)は、細胞外の化学的情報を細胞内に伝達する機能を有する膜タンパク質であり、創薬標的として最も注目されている遺伝子ファミリーの１つです。200以上のヒト由来GPCRが結合するリガンドが不明な「オーファン」として残されています。これらのリガンドを明らかにし、その生理機能と作用機構を解明すれば、全く新しい作用を持った薬の開発につながる可能性があると考えられます。GLIDAは、GPCRに関連した創薬探索やGPCR及びリガンド情報を求めている人たちのために開発されたデータベースです。GLIDAは以下の特徴をもちます; 1. GPCRに関する生物学的知見及びリガンドに関する化学的情報をカバーした高度検索システム、2. GPCR及びリガンドそれぞれの検索機能、3. GPCRとリガンド間の相互検索。
description: GLIDA is a GPCR-Ligand Database. The superfamily of G-protein coupled receptors (GPCRs) is a large class of cell surface receptors that regulate various cellular functions and are important targets for modern drugs. The functions of some GPCRs have not been identified, and this database is useful in GPCR-related drug discovery. The GLIDA web interface has a GPCR search page and a ligand search page, each with a classification menu and a keyword search. Starting either from a GPCR or a ligand, biological and chemical information can be searched as well as crossover between them. @en
language: en
publisher: 京都大学 大学院薬学研究科
  type: Organization
  label: Kyoto University Graduate School of Pharmaceutical Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17986454
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381956
landing page: http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0012
theme: T0010
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0029
status: Active @en
status: 稼動中

nbdc00086
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Globin Gene Server

nbdc00086
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Globin Gene Server

Globin Gene Server
type: Dataset
description: This database contains experimental data on mammalian β-globin gene clusters and sequences. Users can find information on the effects of spontaneous mutations of the human hemoglobin gene as well as experimental data on the regulation of β-globin gene clusters. Additionally, users can use online tools to compare sequences. @en
description: 哺乳類βグロビン遺伝子群の配列や実験結果を収めたデータベースです。自然におこるヒトヘモグロビンの変異とその影響、βグロビン遺伝子クラスターの調整に関する実験データについての情報が含まれており、その他、配列を比較するためのソフトウェアツールが使用できます。
language: en
publisher: Pennsylvania State University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://globin.cse.psu.edu/
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/40674
status: Active @en
status: 稼動中

nbdc00087
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-10-08
source: Integbio Database Catalog
primary topic: GlycoEpitope

nbdc00087
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-10-08
source: Integbio Database Catalog
primary topic: GlycoEpitope

GlycoEpitope
type: Dataset
description: Glyco epitopes are carbohydrate antigens involved in various physiological functions such as cell to cell recognition, fertilization, and blood hormone regulation. This database provides information on the glyco epitopes and antibodies that have been used to analyze their expression. The glycol epitopes are linked to their antibodies, as well as to the original manuscripts on the internet. @en
description: 抗糖鎖抗体やその抗体が反応する生体の組織情報、抗体が認識する糖鎖をキャリーしているタンパク質や脂質、糖転移酵素、文献情報などを格納しています。
language: en
publisher: 立命館大学
  type: Organization
  label: Ritsumeikan University @en
  address country: Japan @en
  address country: 日本
landing page: http://www.glycoepitope.jp/
theme: T0009
theme: T0026
theme: T0008
theme: T0007
status: Active @en
status: 稼動中

nbdc00088
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GrainGenes

nbdc00088
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GrainGenes

GrainGenes
type: Dataset
alternative: A Database for Triticeae and Avena
description: GrainGenesは様々なクラスの内容を検索することができます。クラスは研究に携わっている論文著者名、遺伝子名、文献、多型情報、タンパク情報、配列情報等があります。その他にもBLASTやCmap,GenomeBrowserを使用することができます。
description: Graingenes provides information on wheat and barley research. Users can browse through class data such as references, authors, genes, polymorphisms, proteins, and sequences. Each record is linked to associated databases and web resources. Users can also use BLAST, CMap, and GenomeBrowser. @en
language: en
publisher: Agricultural Research Service of the US Department of Agriculture
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519977
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16219925
landing page: http://wheat.pw.usda.gov/GG2/index.shtml
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/147389
theme: T0029
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4496
theme: T0003
status: Active @en
status: 稼動中

nbdc00089
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: GTOP

nbdc00089
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: GTOP

GTOP
type: Dataset
alternative: Genomes TO Protein structures and functions @en
alternative: Genomes To Protein structures and functions
description: ゲノムにコードされる全タンパク質の配列データを解析した結果をまとめたデータベースです。配列相同性解析を主な手段としており、立体構造予測（対PDBの配列相同性検索。Reverse PSI-BLASTを使用）、機能予測（対Swissprotの配列相同性検索。BLASTを使用）、モチーフ解析 (PROSITE)、ファミリー分類 (Pfam)、膜貫通ヘリックス予測 (SOSUI)、コイルドコイル予測 (Multicoil)、繰り返し配列解析 (RepAlign)の結果が収録されています。
description: GTOP is a integrated database of information on structures and functions of proteins identified by various genome projects. This database, which mainly uses sequence homology analyses, features information on 3D structure of proteins predicted by Reverse PSI-BLAST against PDB. Functional prediction is mainly performed by BLAST search against Swissprot. Results of analysis contains information on protein motifs, family classification, prediction of domains (transmembrane helix and coiled-coil) and repetitive sequences. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18987007
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752318
distribution: Distribution
  description: mas-doc.html
  access URL: ftp://spock.genes.nig.ac.jp/pub/gtop/
landing page: http://spock.genes.nig.ac.jp/~genome/gtop.html
landing page: http://spock.genes.nig.ac.jp/~genome/gtop-j.html
theme: T0021
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00090
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: GTOP (Rice version)

nbdc00090
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: GTOP (Rice version)

GTOP (Rice version)
type: Dataset
alternative: Genomes to protein structures and functions @en
description: 国立遺伝学研究所が公開している「GTOP」のイネ限定版です。GTOPはゲノムにコードされる全タンパク質の配列データを解析した結果をまとめたデータベースで、配列相同性解析を主な手段としており、立体構造予測（対PDBの配列相同性検索。Reverse PSI-BLASTを使用）、機能予測（対Swissprotの配列相同性検索。BLASTを使用）、モチーフ解析(PROSITE)、ファミリー分類(Pfam)、膜貫通ヘリックス予測(SOSUI)、コイルドコイル予測(Multicoil)、繰り返し配列解析(RepAlign)の結果が収録されています。
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12761299
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11163980
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12628242
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12598694
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752318
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11802435
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12234664
distribution: Distribution
  access URL: ftp://spock.genes.nig.ac.jp/pub/gtop/
landing page: http://structure.rice.dna.affrc.go.jp/gtop/gtop-j.html
landing page: http://structure.rice.dna.affrc.go.jp/gtop/gtop.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0022
theme: T0007
status: 運用終了
status: Closed @en

nbdc00091
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: H-ANGEL

nbdc00091
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: H-ANGEL

H-ANGEL
type: Dataset
alternative: The Human Anatomical Gene Expression Library @en
description: ヒトの遺伝子発現についての情報を提供するデータベースです。H-Invitationalプロジェクトの構築した転写産物データに対する遺伝子発現パターンを表示し,遺伝子発現パターンは複数の測定プラットフォームを統合した組織特異的発現データに基づき、実用的な組織分類で表現しています。
description: The Human Anatomical gene Expression Library, H-ANGEL database, is a resource with information on human gene expressions. The human gene expression data can be displayed across 40 distinct tissues and different platforms. Two query interfaces are available: With ' H-Inv Locus Search for gene Expression ', gene expression patterns associated with a particular locus can be retrieved across different tissues and platforms using related identifiers e.g. HIX (H-Inv locus ID), ACC_NO (Genbank ID), Unigene ID, LocusLink ID, OMIM ID, Definition (Genbank), and Product (Genbank). With Expression Pattern Search, a specific expression pattern can be identified across ten tissue categories, and all loci within H-Angel that match the pattern defined by the user can be retrieved. @en
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15103394
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18089548
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608263
distribution: Distribution
  description: download jp.cgi
  description: download.cgi
  rights: help Howto.html
  rights: sitePolicy ja.jsp
  access URL: http://www.h-invitational.jp/hinv/dataset/download_jp.cgi
  access URL: http://www.h-invitational.jp/hinv/dataset/download.cgi
landing page: http://www.h-invitational.jp/hinv/h-angel/wge_top.cgi
landing page: http://h-invitational.jp/hinv/h-angel/
theme: T0024
theme: T0025
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00092
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: H-InvDB

nbdc00092
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: H-InvDB

H-InvDB
type: Dataset
alternative: H-Invitational Database @en
description: H-InvDB is the H-Invitational Database, which integrates human DNA sequences and the proteins for which they carry the production code. Detailed structures of these genes, as well as variations are provided. Indications of where they are located, grouped together and expressed physiologically are also given. An extensive array of views, listing the content under a variety of headings is present. Various search methods are offered e.g. by entering a keyword (simple) or a sequence (Blast). An advanced (more specific) search option is also available. The site can be utilised with the REST application (send request, receive response) as well as the SOAP (send message with search parameters, receive an XML-formatted document) method. @en
description: H-InvDBはヒトのすべての転写産物を対象とした統合データベースです。ヒト遺伝子の構造、選択的スプライシングバリアント、機能性RNA、タンパク質としての機能、機能ドメイン、細胞内局在、代謝経路、立体構造、疾病との関連、遺伝子多型（SNP、マイクロサテライト等）、 遺伝子発現プロファイル、分子進化学的特徴、タンパク質間相互作用(PPI)、遺伝子ファミリー などの精査されたアノテーション（注釈付け）情報を提供しています。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19933760
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18852891
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15103394
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16845023
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18089548
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16185827
distribution: Distribution
  description: download jp.cgi
  description: download.cgi
  rights: sitePolicy ja.jsp
  rights: sitePolicy.jsp
  access URL: http://www.h-invitational.jp/hinv/dataset/download_jp.cgi
  access URL: http://www.h-invitational.jp/hinv/dataset/download.cgi
landing page: http://www.h-invitational.jp/hinv/ahg-db/index.jsp
landing page: http://www.h-invitational.jp/
theme: T0021
theme: T0015
theme: T0024
theme: T0001
theme: T0007
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0028
status: Active @en
status: 稼動中

nbdc00093
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HAL

HAL
type: Dataset
alternative: Human genome Annotation Library
description: ヒトゲノムに潜む遺伝子を発見する信頼性の高いコンピュータアルゴリズムを開発し、それを利用してヒトゲノムに潜む遺伝子の位置と構造、その機能などの注釈情報を取得しました。その成果をデータベース化しています。
language: ja
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  address country: 日本
landing page: http://www.bioportal.jp/genome/cgi-bin/index.cgi?org=hal
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止

nbdc00094
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HarvEST

nbdc00094
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HarvEST

HarvEST
type: Dataset
description: 大麦、ヤマカモジグサ属、ミカン属、コーヒー、ササゲ、バナナ、オオバコ、ダイズ、イネ、小麦のEST配列を提供しています。各生物種の配列や関連する遺伝子情報は、専用のソフトウェアをそれぞれダウンロードして閲覧します。
description: HarvEST is a database and viewing tools for EST in the following organisms: Barley, Brachypodium, Cassava, Citrus, Coffee, Cowpea, Musa (banana/plantain), Soybean, Rice, Wheat. This database contains all EST sequences which have been quality trimmed, cleaned of vector, and assembled using CAP3 with quality values. It includes an ACE file viewer that allows the user to examine the sequence alignment and readily determine where individual sequences reliably deviate from a consensus sequence, including SNPs. Key features of HarvEST include: a choice of assemblies, sequence alignment viewing, synteny displays (available only in Windows versions), archived BLAST hit information, unigene export, Boolean searching with user-defined quantitative settings, and various other searching, reporting and export functions. The unigene export feature is able to be applied to entire assemblies, individual libraries, or any combination of libraries. @en
language: en
publisher: University of California
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: harvest.ucr.edu
  access URL: http://harvest.ucr.edu/
landing page: http://harvest.ucr.edu/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4513
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4640
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/15367
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2706
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3983
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4565
theme: T0002
status: Active @en
status: 稼動中

nbdc00095
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: Hepatitis Virus Database

nbdc00095
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Hepatitis Virus Database

Hepatitis Virus Database
type: Dataset
description: The Hepatitis Virus Database includes all HCV/HBV/HEV/HAV/HAD entries from the latest release of the DNA Data Bank of Japan, arranged both from genomic location and phylogenetic relation. Map information and a reference map can be accessed from individual virus databases, and data sets consisting of full annotated data, nucleic acid sequences or amino acid sequences can be obtained. The 'account mode' can be used to make private divisions of obtained data. @en
description: 肝炎ウィルス (B型、C型、E型）の各遺伝子の核酸配列、アミノ酸配列、全遺伝子配列を対象にした系統樹、アライメント、距離行列を掲載しています。ユーザ登録が必要なアカウントモードと、フリーで閲覧できる（データに制限あり）非アカウントモードに分かれています。
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17877727
landing page: http://s2as02.genes.nig.ac.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/12461
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10407
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/11103
theme: T0001
theme: T0007
theme: T0027
theme: T0021
status: Active @en
status: 稼動中

nbdc00096
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Het-PDB Navi

nbdc00096
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Het-PDB Navi

Het-PDB Navi
type: Dataset
alternative: A navigator of small molecules in Protein Data Bank which is called heterogen atoms or in short hetatoms
description: Het-PDB Navi is a database of heterogen molecules in the Protein Data Bank (PDB), which act as cofactors for enzymes or stabilizers of proteins. Entries can be surveyed to study their interactions statistically. Searches can be performed based on PDB code, hetero-atom code, protein name or hetero-atom name. Help with the use of the RasMol application is also provided. @en
description: タンパク質の立体構造がどのような低分子（ヘテロ原子）との共結晶で決定されているかを知ることを目的に、Protein Data Bank (PDB)にエントリーされているタンパク質と低分子の相互作用を収集したデータベースです。PDBに最も多く含まれている低分子は、カルシウム、亜鉛、マグネシウムなどの金属イオンであり、その次に糖分子やヌクレオチドが多く含まれています。これらの低分子は酵素の補因子として働いたり、タンパク質の構造安定化に寄与しています。
language: en
publisher: 長浜バイオ大学
  type: Organization
  label: Nagahama Institute of Bio-Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14999012
landing page: http://hetpdbnavi.nagahama-i-bio.ac.jp/index.php?mode=0
theme: T0009
theme: T0022
theme: T0010
theme: T0026
theme: T0008
theme: T0007
theme: T0011
status: Active @en
status: 稼動中

nbdc00097
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-03-12
source: Integbio Database Catalog
primary topic: HGMD

nbdc00097
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-03-12
source: Integbio Database Catalog
primary topic: HGMD

HGMD
type: Dataset
alternative: The Human Gene Mutation Database
description: HGMD is a integrated database of germ-line mutations which are underlying or associated with human inherited disease in nuclear genes. This database contains all germ-line disease-causing mutations and disease-associated/functional polymorphisms reported in the literature. Furthermore, it includes the data about single base-pair substitutions in coding (e.g. missense and nonsense), regulatory and splicing-relevant regions of human nuclear genes, micro-deletions and micro-insertions, indels, repeat expansions, as well as gross gene lesions (deletions, insertions and duplications) and complex gene rearrangements. These data are provided in a readily accessible format to all interested parties, whether they are from an academic, clinical or commercial background. @en
description: このデータベースは、ヒト遺伝病の原因核遺伝子と遺伝病関連遺伝子の生殖細胞における変異情報を網羅的に収載しています。
language: en
publisher: Institute of Medical Genetics in Cardiff
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://www.hgmd.org/
theme: T0021
theme: T0015
theme: T0001
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00098
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-15
source: Integbio Database Catalog
primary topic: HGS

HGS
type: Dataset
alternative: Human Genome Sequencing
description: 高機能基盤生体データベース (ALIS) プロジェクトの配列データを提供しています。JSTと4つのシークエンシングチームが7染色体を対象としてシークエンシングを行いました。染色体マップとシークエンシングデータは、表中の染色体名または染色体内の領域名を選択すると表示されます。
language: ja
language: en
publisher: 独立行政法人科学技術振興機構
  type: Organization
  address country: 日本
theme: T0021
theme: T0001
status: 運用終了

nbdc00099
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HINTdb

nbdc00099
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HINTdb

HINTdb
type: Dataset
alternative: Homologous Interactions Database @en
description: HINTdb contains protein-protein interactions experimentally determined by IntAct, BioGRID and HPRD. Homologous interactions are identified by PSI-Blast and orthologous and paralogous interactions by KEGG Orthology. The InterPro database is used for domain information on the proteins, and gene ontology terms are those of the GO database. The user can select interactions of a particular protein and view homologs of the interaction. @en
description: 実験的に決定したタンパク質-タンパク質相互作用のデータベースです。配列相同性を元にグループ化されています。9生物種間で176,983件の相互作用が登録されており、このうち87,026件の相互作用にはホモログが存在します。Swissprot ID、PDB ID、Entrez gene ID、遺伝子名やキーワードで検索できます。
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: help.html
  access URL: http://hintdb.hgc.jp/hint/download.html
landing page: http://hintdb.hgc.jp/hint/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0007
status: Active @en
status: 稼動中

nbdc00100
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HIV DATABASES

nbdc00100
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HIV DATABASES

HIV DATABASES
type: Dataset
description: This database contains information on human immunodeficiency virus (HIV) genetic sequences, epitopes, drug resistance-associated mutations, and clinical trials data for vaccines. @en
description: このデータベースはヒト免疫不全ウィルスの塩基配列、エピトープ、薬剤耐性変異、ワクチンの臨床試験に関する情報が含まれています。
language: en
publisher: Los Alamos National Secutiry, LLC
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.hiv.lanl.gov/content/index
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/12721
theme: T0015
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00101
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HomoloGene

nbdc00101
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HomoloGene

HomoloGene
type: Dataset
description: In Homologenes, users can find automatically constructed homologous gene sets from the full-length genome sequences of a wide range of eukaryotic species, as well as mRNA and protein sequences. @en
description: 全ゲノム配列が決定された20種類の真核生物の間で自動的検出したホモログ遺伝子のセット、およびmRNAやタンパク質の配列データを提供しています。他の生物種のUniGene配列でホモログの可能性があるものも表示されます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/pub/HomoloGene/
landing page: http://www.ncbi.nlm.nih.gov/homologene
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7165
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33169
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/148305
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5141
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/28985
status: Active @en
status: 稼動中

nbdc00102
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-10-16
source: Integbio Database Catalog
primary topic: HOWDY-R

nbdc00102
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-10-16
source: Integbio Database Catalog
primary topic: HOWDY-R

HOWDY-R
type: Dataset
alternative: Human Organized Whole genome Database Powered by RDF @en
description: HOWDY-R (Human Organized Whole genome Database Powered by RDF) is a database for retrieve human genome information in different data sources that are available to public. The information you could find here is automatically extracted from the genetic databases and shown with all data having the identifiers in common and linking to one another. HOWDY-R facilitates obtaining information of human genes by using official symbols and aliases. @en
description: ヒトゲノム情報に関する公共データベースを相互に関連付け、それらを統合的に利用できるようにしたヒトゲノム情報統合データベースです。キーワードで検索すると、キーワードを含む各データベースの項目が相互に関連づけられて表示されます。 科学技術振興機構 (JST) で推進しているALIS (Advanced Lifescience Information System) プロジェクトに関する成果と世界で公開されている主な公共データを相互に関連付けたヒトゲノム情報の統合データベース HOWDY (http://howdy.biosciencedbc.jp/HOWDY/top_ja.pl) の後継サイトです。
language: en
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  label: Japan Science and Technology Agency National Bioscience Database Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752279
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20058496
landing page: http://howdy.biosciencedbc.jp/HOWDY-R/
theme: T0021
theme: T0015
theme: T0001
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00103
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HPRD

nbdc00103
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HPRD

HPRD
type: Dataset
alternative: Human Protein Reference Database @en
description: HPRD (Human Protein Reference Database) version 9 is a manually curated, fully GO compliant protein database. The repository contains 30,047 protein entries, 41,327 protein-protein interactions and 93,710 posttranslational modifications. There are 112,158 occurrences of protein expression, 22,490 of subcellular positioning and 470 domains are identified. All the information in HPRD, including features of proteins such as post-translational modifications, tissue expression, subcellular localization and protein-protein interactions, may be downloaded as XML and FLAT files. Permission is, however, necessary before this may be done. The database can be browsed by selecting a protein, domain, motif, PTM or localization class of interest from a list that is provided. A Blast search option is available by entering a nucleotide or protein sequence. @en
description: ヒトタンパク質に関して、タンパク質名、各種DBのAccessionNumber、HPRD_ID、GeneSymbol、染色体位置、分子分類、翻訳後修飾、局在情報、ドメイン名、モチーフ名、発現位置、タンパクの配列長、分子量、疾患名などで検索することが可能です。その他にもBLASTによる塩基、アミノ酸配列検索が使用できます。
language: en
publisher: Institute of Bioinformatics
  type: Organization
  address country: India @en
  address country: インド
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18988627
distribution: Distribution
  description: download
  rights: download
  access URL: http://www.hprd.org/download
landing page: http://www.hprd.org
theme: T0021
theme: T0015
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00104
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: HUGE

nbdc00104
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: HUGE

HUGE
type: Dataset
alternative: A Database of Human Unidentified Gene-Encoded Large Proteins Analyzed by Kazusa Human cDNA Project
description: 財団法人かずさDNA研究所では、巨大タンパク質をコードすることが予想される4,000塩基以上のヒト長鎖cDNAの構造情報を蓄積してきました。長鎖cDNAがコードするマルチドメイン構造を持つタンパク質が生物学的に重要な働きをしていると推測したからです。現在までに新しく発見した約2,000種の新規ヒト遺伝子にKIAA番号を付して公的データベース登録し、本データベースで情報公開と遺伝子の配布を行っています。
description: The HUGE database is published by the Kazusa DNA Research Institute based on the results of its Kazusa Human cDNA Project to sequence and analyze long (>4 kb) human cDNAs and establish methods to predict the primary structure of proteins with various biological activities. Information on the predicted primary structure of newly identified human proteins that may be involved in cellular structure/motility, gene expression and nucleic acid metabolism, cell signaling/communication, etc. is available. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681467
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847221
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592264
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752282
landing page: http://www.kazusa.or.jp/huge/
theme: T0021
theme: T0001
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00105
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-18
source: Integbio Database Catalog
primary topic: IMGT

nbdc00105
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-18
source: Integbio Database Catalog
primary topic: IMGT

IMGT
type: Dataset
alternative: IMGT, the international ImMunoGeneTics information system
description: IMGT is a database that offers information on immunogenetics and immunoinformatics. This repository focuses on T cell receptors, immunoglobulins and major histocompatibility of humans and other vertebrates. Information on vertebrate and invertebrate proteins related to the immune system are also covered. The IMGT repository contains a series of databases namely for genome, structure, monoclonal antibodies and sequence. A number of interactive tools like IMGT/V-QUEST, IMGT/Phylogene and IMGT/Allele-Align are available. Access is also provided to 10 IMGT Web resources, of which a few are The IMGT Medical page, The IMGT Biotechnology page, IMGT Scientific chart and The IMGT Immunoinformatics page. A keyword search option is available. @en
description: 免疫グロブリン(IG)、Ｔ細胞レセプター(TR）、主要組織適合性遺伝子複合体（MHC）、免疫グロブリン超分子群、主要組織適合複合体スーパーファミリー、免疫システムに関連するタンパク質に特化した知識リソースです。ヒトやその他の脊椎動物、無脊椎動物の情報が含まれています。配列データベース群、ゲノムデータベース、構造データベースから構成されています。
language: en
publisher: Montpellier University, Montpellier
  type: Organization
  address country: France @en
  address country: フランス
publisher: CNRS (The National Center for Scientific Research)
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592230
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125093
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847182
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12818634
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608269
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18978023
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15972004
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520009
distribution: Distribution
  description: README.txt
  description: userman doc.html
  description: userman doc 3ddb.html
  rights: Warranty.php
  access URL: http://www.imgt.org/IMGTdownloads.html
landing page: http://www.imgt.org/
theme: T0021
theme: T0022
theme: T0001
theme: T0007
theme: T0005
theme: T0013
theme: T0019
status: Active @en
status: 稼動中

nbdc00106
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IMGT/HLA Database

nbdc00106
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IMGT/HLA Database

IMGT/HLA Database
type: Dataset
description: このデータベースはヒト主要組織適合遺伝子複合体の配列情報とWHOの命名委員会の公式配列情報を提供しています。このデータベースはIMGT(the International ImMuno GeneTics project)の一部です。
description: IMGT/HLA is a database that specializes in the human major histocompatibility complex and its sequences. There are 8,949 allele sequences that are available, and of them, 6919 are HLA Class I Alleles, 1,875 are HLA Class II Alleles and 155 are other non-HLA Alleles. Information about the source material, from which the sequences were obtained, is provided in detail. Authors of publications regularly check their data against IMGT/HLA first to ascertain the official name of their sequence to avoid confusion due to multiple names for the same product. An IMGT/HLA Alignment Tool is provided as well as protein and nucleotide Blast search options. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
distribution: Distribution
  description: manual.html
  rights: licence.html
  access URL: http://www.ebi.ac.uk/ipd/imgt/hla/download.html
landing page: http://www.ebi.ac.uk/imgt/hla/
theme: T0021
theme: T0001
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0019
status: Active @en
status: 稼動中

nbdc00107
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: INOH Pathway Database （アーカイブ）

nbdc00107
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-03
source: Integbio Database Catalog
primary topic: INOH Pathway Database （アーカイブ）

INOH Pathway Database （アーカイブ）
type: Dataset
title: INOH Pathway Database (Archive) @en
alternative: Integrating Network Objects with Hierarchies Pathway Database
description: INOH provides information on the molecular pathways in humans, mice, rats and other organisms. This data is collected from literature and the pathway describing terms used are also linked to at least two additional databases, namely SWISS-PROT and gene Ontology (GO). Both these links were tested and found to work well. The data (new as well as archived) and pathways themselves can be downloaded to personal computers for later use. @en
description: ヒト、マウス、ラット等のモデル動物のパスウェイデータベースです。シグナル伝達パスウェイや代謝を構成する複層的生体分子の関係などの高次機能情報をオントロジーを使ってデータベース化しています。文献から手作業で抽出したパスウェイ情報を格納しています。 東京大学大学院によるオリジナルサイト (http ://inoh.hgc.jp/) の運用は終了しました。INOHのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
language: ja
publisher: 東京大学大学院 医学系研究科
  type: Organization
  label: The University of Tokyo Graduate School of Medicine @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22120663
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17094236
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18629146
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15089754
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11590099
distribution: Distribution
  description: README.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/inoh/download.html
landing page: http://dbarchive.biosciencedbc.jp/jp/inoh/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0026
theme: T0019
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7215
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00108
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: InterPro

nbdc00108
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: InterPro

InterPro
type: Dataset
alternative: Integrated documentation resource for protein families, domains and functional sites
description: InterPro is a database that analyses proteins functionally and classifies them into families as well as predicts their domain and sites in the genome. This repository harvests its content from a large number of related databases and consolidates its findings into a single searchable resource avoiding the occurrence of redundant entries. InterPro aims to update their content every 8 weeks. A keyword search is available and an option is provided where a protein sequence can be entered for analysis. @en
description: EBI によるタンパク質のファミリー分類、ドメイン、機能サイトに関する記述を収集した統合データベースです。UniProtやPROSITE、PANTHER、ProDom、SMARTなどタンパク質の特性を収録している複数のデータベースを集結し、様々なレベルでのタンパク質の特徴を提供しています。InterProScanを用いて、ユーザが入力した配列から機能ドメインや構造ドメインを検索することができます。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18836194
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22301074
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21785143
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22096229
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15980438
distribution: Distribution
  description: download.html
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/interpro/download.html
landing page: http://www.ebi.ac.uk/interpro/
theme: T0021
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00109
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: iProClass

nbdc00109
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: iProClass

iProClass
type: Dataset
alternative: Integrated Protein Knowledgebase @en
description: UniProtKBおよびUniParc登録タンパク質に対し、タンパクファミリー、機能、パスウェイ、相互作用、構造、構造分類、遺伝子、ゲノム、オントロジー、文献、生物種などを含む90種類以上の生物学データベースのリンク付けを行っているデータベースです。データウエアハウスとハイパーテキストナビゲーション手法を組み合わせて、多数のデータベースのリンク情報を統合したデータを提供しています。
description: The iProClass database integrates protein information from a variety of sources. The database connects information from several different common web databases and provides users a report including ontology, sequence, structure, gene family, and literature links. Users can search using keywords or IDs from any of the linked databases. @en
language: en
publisher: Georgetown University Medical Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15022647
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125047
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520030
landing page: http://pir.georgetown.edu/iproclass/
theme: T0007
status: Active @en
status: 稼動中

nbdc00110
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: J*FLY

nbdc00110
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: J*FLY

J*FLY
type: Dataset
alternative: data depository for Drosophila researchers
description: Jflyでは、ショウジョウバエを中心とした研究を促進する3つのサービスを提供しています。 （１）会員制メーリングリストサービス：ショウジョウバエ研究に関連する情報を交換するメールリストと、bionet.drosophila ニュースグループ記事のメールでの転送を行います。 （２）Jflyホームページ：ショウジョウバエ関連情報（特に日本語の情報）を集積・公開するデータベースを提供しています。 （３）FlyBrain ホームページ：ショウジョウバエ中枢神経系を中心とした画像データベースです。投稿も受け付けています。
description: Jfly consists of following 3 contents to support Drosophila researchers. 1. Jfly mailing list seivice is the membership system to exchange information on Drosophila research, and it forwards the mail magazine of bionet.drosophila newsgroup to Jfly members. 2. Jfly homepage is a database that stores back issues of mail magazine, protocols, the address book of researchers and information on stock lists of Drosophila strains. Some contents are only available in Japanese. 3. FlyBrain is atlas and database for anatomical images of the Drosophila central nervous system. @en
language: ja
language: en
publisher: 東京大学 分子細胞生物学研究所
  type: Organization
  label: The University of Tokyo Institute of Molecular and Cellular Biosciences @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://jfly.iam.u-tokyo.ac.jp/archive_index.html
  access URL: http://jfly.iam.u-tokyo.ac.jp/archive_index_j.html
landing page: http://jfly.iam.u-tokyo.ac.jp/index.html
landing page: http://jfly.iam.u-tokyo.ac.jp/index_j.html
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7214
theme: T0029
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00111
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: JDD

nbdc00111
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: JDD

JDD
type: Dataset
alternative: Japan Drosophila Database
description: ショウジョウバエ遺伝学のデータベースです。遺伝子一覧表示、唾液染色体のバンドの地図、体の部位の名称、ショウジョウバエ科の生物の紹介、系統分類に重要な文献の検索、2次元電気泳動によるプロテオーム解析結果が収録されています。ショウジョウバエ各部の形態的特徴とその名称の調査、検索システムは特に優れています。
description: JDD is an introductory database on genetics and taxonomy of Drosophila. JDD stores images of wild-types and mutants, cytological maps, information on taxonomy of Drosophilidae and proteome atlas with search function. This database provides search systems of gene symbols, species name and taxonomic references. English page of each content is not constructed, and the home page of JDD provides only links to the Japanese pages. @en
language: ja
language: en
publisher: 京都工芸繊維大学 ショウジョウバエ遺伝資源センター
  type: Organization
  label: Kyoto Institute of Technology Drosophila Genetic Resource Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.dgrc.kit.ac.jp/~jdd/
landing page: http://www.dgrc.kit.ac.jp/~jdd/index_en.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7214
theme: T0029
theme: T0001
theme: T0007
theme: T0027
theme: T0013
theme: T0030
status: Active @en
status: 稼動中

nbdc00112
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: JG-SNP

nbdc00112
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: JG-SNP

JG-SNP
type: Dataset
alternative: 老年病SNPデータベース
alternative: A Database of Japanese Single Nucleotide Polymorphism for Geriatric Research @en
description: JG-SNP is a database for accurate medical information and SNPs associated with geriatric diseases. This database contains information on clinical and pathological diagnoses, autopsy findings and SNPs kept by Tokyo Metropolitan Geriatric Hospital. Correlation between genetic polymorphisms and geriatric diseases can be searched by SNPs data and diagnoses, respectively. @en
description: 東京都老人医療センターで収集された、老年病患者の臨床診断、病理診断、遺伝子多型データをデータベース化したものです。高齢者に特有な疾患と遺伝子多型性との関連に関する研究成果を広く役立てるために構築され、公開されています。
language: ja
language: en
publisher: 地方国立研究開発法人東京都健康長寿医療センター
  type: Organization
  label: Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15336912
landing page: http://www.tmghig.jp/jg-snp/english/E_top.html
landing page: http://www.tmghig.jp/jg-snp/japanese/top.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: 休止
status: Inactive @en

nbdc00113
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: JMSR

nbdc00113
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: JMSR

JMSR
type: Dataset
alternative: Japan Mouse/Rat Strain Resources Database
description: JMSRは国内の入手可能なマウス・ラットリソースのほぼすべてを対象として検索できるデータベースです。本データベースを使って希望するリソースを探し出すと同時に、そのまま提供元の機関にアクセスして注文することができます。データは各機関の協力により定期的に更新しています。
description: JMSR is constructed by the genetic Informatics Laboratory, National Institute of genetics (NIG) as a database of mouse and rat strains stocked in Japan. JMSR covers almost all the bioresources of mice and rats available in Japan including frozen embryos, frozen sperm, organs and ES cells. This database provides a query form to cross-search databases of 10 stock centers for the strains. A link in each search result shows detailed information on a request for the bioresource. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: jmsr
  access URL: http://shigen.nig.ac.jp/mouse/jmsr/download/
  access URL: http://www.shigen.nig.ac.jp/mouse/jmsr/download/
landing page: http://www.shigen.nig.ac.jp/mouse/jmsr/top.jsp
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
status: Active @en
status: 稼動中

nbdc00114
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: JSNP（アーカイブ）

nbdc00114
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: JSNP（アーカイブ）

JSNP（アーカイブ）
type: Dataset
title: JSNP (Archive) @en
alternative: Japanese Single Nucleotide Polymorphisms
description: 日本人の持つ約19万7000の一塩基多型（SNPs）データにアノテーション（遺伝子情報、位置情報、アミノ酸置換情報等）を付加して公開しているデータベースです。 東京大学医科学研究所によるオリジナルサイト（http:// snp.ims.u-tokyo.ac.jp/index.html）の運用は終了しました。JSNPに掲載していた「Genotype頻度データ」は、国立研究開発法人科学技術振興機構のNBDCヒトデータベース（http://humandbs.biosciencedbc.jp） からダウンロード頂けます（NBDC Research ID: hum0014）。また、JSNPオリジナルSNP（「JSNP data FASTA files」記載の多型）の関連データは、生命科学系データベースアーカイブからご利用いただけます。
description: JSNP is a database consisting of common gene variations found in the Japanese population. In 2002, it was released information related to 190,562 genetic variations. The original database has been retired. The Genotype frequency data are available in NBDC Human Database (http://humandbs.biosciencedbc.jp/en/), and the JSNP original SNP data in 'JSNP data FASTA files' are available in Life Science Database Archive (https://dbarchive.biosciencedbc.jp/index-e.html). @en
language: ja
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The institute of medical science, The University of Tokyo @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12426569
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752280
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12436197
distribution: Distribution
  description: README.html
  description: README e.html
  rights: lic.html
  access URL: http://dbarchive.biosciencedbc.jp/jp/jsnp/download.html
  access URL: http://dbarchive.biosciencedbc.jp/en/jsnp/download.html
landing page: https://dbarchive.biosciencedbc.jp/en/jsnp/desc.html
landing page: http://dbarchive.biosciencedbc.jp/jp/jsnp/desc.html
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00115
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG BRITE

nbdc00115
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG BRITE

KEGG BRITE
type: Dataset
alternative: Functional hierarchies and binary relationships of biological entities @en
description: 生命システムを様々な観点から機能分類し、階層的に表現したデータベースで、文献等から手作業で作成されています。「パスウエイ・オントロジー」、「遺伝子・タンパク質」、「病気・医薬品」、「化合物・化学反応」、「生物種・細胞」について、階層的な分類が表示されます。
description: The KEGG BRITE database contains functional hierarchies and binary relationships of biological entities, and includes many types of relationships. KEGG BRITE maps large-scale molecular datasets in genomics, transcriptomics, proteomics, and metabolomics to BRITE functional hierarchies, and allows biological interpretation of higher-level systemic functions. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/kegg/brite.html
theme: T0028
theme: T0019
status: Active @en
status: 稼動中

nbdc00116
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG EXPRESSION Database

nbdc00116
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG EXPRESSION Database

KEGG EXPRESSION Database
type: Dataset
description: ラン藻Synechocystis PCC6803、枯草菌、大腸菌W3110 株、窒素固定ラン藻アナベナ PCC7120、その他、日本の研究コミュニティが寄与した生物種の遺伝子発現プロファイルデータのレポジトリです。
description: The KEGG EXPRESSION database provides microarray gene expression profile data for Synechocystis PCC6803 (syn), Bacillus subtilis (bsu), Escherichia coli W3110 (ecj), Anabaena PCC7120 (ana), and other species from the Japanese research community. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: keggftp.html
  access URL: ftp://ftp.genome.jp/pub/db/community/expression/
landing page: http://www.genome.jp/kegg/expression/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/103690
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1148
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/316407
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00117
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG LIGAND Database

nbdc00117
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG LIGAND Database

KEGG LIGAND Database
type: Dataset
alternative: Molecular building blocks of life in the chemical space @en
description: 生体機能と関連する化合物と反応に関する情報を収めたデータベースです。分子量や構造などの化合物そのものの情報の他に、化合物が関連するKEGG PATHWAYへのリンクが含まれています。KEGG COMPOUND, GLYCAN, REACTION, RPAIR, RCLASS, ENZYMEのデータベースから構成されます。
description: The KEGG LIGAND database is a composite consisting of COMPOUND, GLYCAN, REACTION, RPAIR, RCLASS, and ENZYME databases. The primary database is relational, and the KegDraw interface is used to generate the secondary DBGET database. Chemical structure search includes SIMCOMP and SUBCOMP with which the query compound is partially or fully matched, respectively, and a similar glycan structure search. Reaction search and prediction is also available. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README.ligand
  rights: legal.html
  access URL: http://www.kegg.jp/kegg/download/
landing page: http://www.genome.jp/kegg/ligand.html
theme: T0026
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00118
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG PATHWAY Database

nbdc00118
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG PATHWAY Database

KEGG PATHWAY Database
type: Dataset
alternative: Wiring diagrams of molecular interactions, reactions, and relations
description: 代謝、様々な細胞プロセス、ヒト疾患などに関する分子ネットワークの知識を表現したパスウェイマップを収録しています。マップは文献等から手作業で作成しています。
description: The KEGG PATHWAY database has manually drawn pathway maps that represent molecular interaction and reaction networks for the following: Global Map, Metabolism, genetic Information Processing, Cellular Processes, Organismal Systems, Human Diseases and also structure relationships in Drug Development. By using KEGG PATHWAY mapping, molecular datasets can be mapped for the biological interpretation of higher-level systemic functions. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/kegg/pathway.html
theme: T0015
theme: T0009
theme: T0010
theme: T0026
theme: T0008
theme: T0007
theme: T0013
status: Active @en
status: 稼動中

nbdc00119
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG SSDB Database

nbdc00119
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-11-18
source: Integbio Database Catalog
primary topic: KEGG SSDB Database

KEGG SSDB Database
type: Dataset
alternative: Sequence Similarity Database (Orthologs/paralogs, conserved gene clusters, and sequence motifs) @en
description: The KEGG SSDB (Sequence Similarity DataBase) organizes amino acid sequence similarities among all protein-coding genes in complete genomes computationally generated from the geneS database in KEGG. Using the SSEARCH program, all possible pairwise genomes are compared and gene pairs with a Smith-Waterman similarity score of 100 or more are entered into SSDB together with the information on best hits and bidirectional best hits (best-best hits). SSDB is a weighted and directed graph that can be used to search orthologs and paralogs, and conserved gene clusters, taking positional correlations on the chromosome into consideration. @en
description: KEGG GENES データベースをもとに、完全ゲノム配列決定されている全生物種を対象としてそのアミノ酸配列の類似性スコアがデータベース化されています。
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.kegg.jp/kegg/ssdb/
theme: T0021
theme: T0007
theme: T0027
status: Active @en
status: 稼動中

nbdc00120
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: KOME (アーカイブ)

nbdc00120
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: KOME (アーカイブ)

KOME (アーカイブ)
type: Dataset
title: KOME (Archive) @en
alternative: Knowledge-Oriented Molecular Biological Encyclopedia @en
description: This site contains information on full-length cDNA from rice, classified into approximately 28,000 groups of clones, and part of the 'rice full-length cDNA' project to construct a full-length cDNA library from stressed tissues. It includes not only the nucleotide sequence and encoded amino acid sequence information, but also the results of the homology search with public databases, mapping information, pattern of alternative splicing, protein domain information, transmembrane structure, cellular localization, and gene function by gene Ontology. The original site (http: //cdna01.dna.affrc.go.jp/cDNA/) has been closed. KOME is available from LSDB archive site. @en
description: 「イネ完全長cDNAプロジェクト」において、日本晴イネ由来の各種組織、ストレス処理等をおこなった組織より、完全長cDNAライブラリーを構築し、機能解析を行った約28,000種類のイネ完全長cDNAの情報を公開しています。 核酸配列やアミノ酸配列のほかに、公共データベースとの相同性検索結果、マッピング情報、選択的スプライシングのパターン、タンパクドメイン情報、膜貫通構造、Gene Ontologyによる細胞内局在や遺伝子機能情報も含まれます。 国立研究開発法人 農業・食品産業技術総合研究機構によるオリジナルサイト（http: //cdna01.dna.affrc.go.jp/cDNA/）の運用は終了致しました。引き続き生命科学系データベースアーカイブからKOMEをご利用いただけます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18043742
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12869764
distribution: Distribution
  description: README e.html
  description: README.html
  rights: lic.html
  access URL: http://dbarchive.biosciencedbc.jp/jp/kome/download.html
  access URL: http://dbarchive.biosciencedbc.jp/en/kome/download.html
landing page: https://dbarchive.biosciencedbc.jp/jp/kome/desc.html
landing page: https://dbarchive.biosciencedbc.jp/en/kome/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0024
theme: T0007
theme: T0002
status: Active @en
status: 稼動中

nbdc00121
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KONCHU

nbdc00121
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KONCHU

KONCHU
type: Dataset
alternative: 昆虫学データベース
description: 昆虫学データベース(KONCHU)は、日本および東アジア、大平洋地域産昆虫 (クモ・ダニ類を含む)に関する種情報データベースの総称で、次のデータベースを含んでいます：昆虫学文献データベース、有用昆虫画像データベース、日本産昆虫目録データベース、日本産昆虫学名和名辞書、熱帯アジア産ハナバチ類文献データベース、九州大学昆虫学教室所蔵タイプ標本データベース、九州大学昆虫学教室所蔵ハナバチ類標本データベース、九州大学総合研究博物館所蔵甲虫類標本データベース。
description: KONCHU is an entomology database of Japanese, East Asian and Pacific insect species with spiders and mites. KONCHU contains following seven main contents; KONCHUR (a entomology reference database), MOKUROKU (a checklist treating all the insect species or subspecies recorded from Japan), DJI (a dictionary of Japanese insect names), ELKUType (the type collection of the Entomological Laboratory of Kyushu University), TABR (Tropical bee reference database), HANABACHI and TOBIKOBACHI (image databases on useful Japanese insects). @en
language: ja
language: en
publisher: 九州大学 大学院農学研究院
  type: Organization
  label: Kyushu University Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/index-j.html
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/index-e.html
theme: T0014
theme: T0031
theme: T0029
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6656
theme: T0030
status: Active @en
status: 稼動中

nbdc00122
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KONCHUR

nbdc00122
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KONCHUR

KONCHUR
type: Dataset
alternative: 昆虫学文献データベース
description: 昆虫学文献データベース(KONCHUR)は日本の主要な昆虫学・動物学雑誌について、掲載された各論文中の昆虫(クモ・ダニ類を含む)の分類単位(種、属、科等の学名または和名)を一つのレコードとした文献データベースです。日本語と英語に対応しています。扱われている昆虫は、日本国内のみならず、アジア、太平洋地域産の種も多く含まれています。各レコードには、著者名、表題名、掲載誌名、巻号頁、刊行年、目名、科名、同物異名、分布、分類、形態、生態、生理等に関するキーワードなど13項目を収録しています。備考には、新種の模式産地、模式標本の所在地、寄生種の寄主など有用な情報も多数採録しています。
description: KONCHUR is a reference database of the main Japanese entomological and zoological journals associated with Japanese, East Asian and Pacific insects. A taxon is treated as one record in this database, and each record is composed of 13 items of data and tags including taxon names (scientific name and Japanese name), order, family, synonymy and distribution. This database allows to search records by keywords from these items. Search results show additional useful information such as type locality of new recorded species, type depository and host records of parasitic insects. @en
language: ja
language: en
publisher: 九州大学 大学院農学研究院
  type: Organization
  label: Kyushu University Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/konchur/index-j.html
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/konchur/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6656
theme: T0030
status: Active @en
status: 稼動中

nbdc00123
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: LeEST

LeEST
type: Dataset
description: シイタケよりcDNAライブラリを構築し、その5' ESTを配列決定しました。EST番号、配列、NCBI BLASTによるホモロジー検索結果（ホモログと相同性）を表形式で掲載しています。
language: ja
publisher: 島根大学
  type: Organization
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18357445
landing page: http://yoshiki.life.shimane-u.ac.jp/Ledodes.EST/est%20homepage/LeEST.html
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5353
status: 稼動中

nbdc00124
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: Legume Base

nbdc00124
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-09-11
source: Integbio Database Catalog
primary topic: Legume Base

Legume Base
type: Dataset
alternative: NBRP ミヤコグサ・ダイズ
alternative: NBRP Lotus / Glycine @en
description: NBRP Legume Base is a database for offering research materials of two legume species; Lotus japonicus and Glycine max (soybean). Legume Base provides a query form to search resources of each species and check availability. In addition, this database contains two databases; 'Legume Base - Lotus japonicus' and 'Glycine max Database'. Both of them cover detailed information on the two species including lists of strains, phenotypes and genotypes. @en
description: ミヤコグサ、ダイズの2種類の情報を提供しているサイトです。分与申し込みもサイト上で受け付けており、種子、DNA、ベクターなどのバイオリソースを検索することが可能です。
language: ja
language: en
publisher: 宮崎大学 農学部
  type: Organization
  label: University of Miyazaki, Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: https://www.legumebase.brc.miyazaki-u.ac.jp/top.jsp
landing page: https://www.legumebase.brc.miyazaki-u.ac.jp/index.jsp
theme: T0016
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/379
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34305
theme: T0013
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00125
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: LinkDB Search

nbdc00125
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: LinkDB Search

LinkDB Search
type: Dataset
description: ゲノムネット内データベースとその他 500以上の外部公共データベースの間のクロスリファレンス情報を2項関係ファイルとして取り込み、あるデータベースのあるエントリについて、他のデータベース中の対応するデータを網羅的に検索できるシステムです。外部データベースと内部データベースを区別なく検索する機能や等価なリンクを扱うための機能が備わっています。
description: The LinkDB database links information between hundreds of molecular biology databases. The database consists of the following three sections: (1) 'Original' links are information extracted from the database entries provided by the GenomeNet DBGET system. (2) 'Reverse' links are information derived from the original links by exchanging a source entry and its target entry. (3) 'Equivalent' links indicate equivalent contents between KEGG geneS, COMPOUND, DRUG, REACTION databases and other databases other than KEGG. Users can search the link information by entry and also download equivalent link information for a selected organism, or for compound drug and reaction. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/linkdb/
theme: T0031
status: Active @en
status: 稼動中

nbdc00126
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: LipidBank

nbdc00126
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: LipidBank

LipidBank
type: Dataset
description: 6,000以上の天然生理活性脂質（脂肪酸、グリセロ脂質、スフィンゴ脂質、ステロイド、ビタミン類）について、その構造、物理的・化学的特性、スペクトルデータ、代謝系、脂肪酸組成、参考文献を収集したデータベースです。構造はChemDraw、およびMDLMOL形式で提供されます。データベースに登録されている全ての情報は手作業でキュレートを行い、専門家によって承認されたものです。 本ページは旧サイトで、現在はwiki形式で公開されています(http://lipidbank.jp/wiki/Category:LB)。
description: Lipidbank is the official database of the Japanese Conference on the Biochemistry of Lipids (JCBL). Natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins can be freely searched. It also provides more than 6000 unique molecular structures (ChemDraw cdx format, MDL MOL format) with their lipid names (common name, IUPAC), spectral information (mass, UV, IR, NMR and others), and links to published information. @en
language: en
publisher: 日本脂質生化学会 (JCBL)
  type: Organization
  label: The Japanese Conference on the Biochemistry of Lipids @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12058481
landing page: http://lipidbank.jp/
theme: T0009
theme: T0023
theme: T0029
status: Active @en
status: 稼動中

nbdc00127
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: ライフサイエンス辞書

nbdc00127
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: ライフサイエンス辞書

ライフサイエンス辞書
type: Dataset
title: LIFE SCIENCE DICTIONARY @en
alternative: LIFE SCIENCE DICTIONARY
description: ライフサイエンス分野で使用される専門用語の辞書です。英和検索、和英検索、共起検索、用例、スペルチェックなどが可能で、用語の論文アブストラクト中における用例を確認できます。
description: LSD Project is a database of life science terms with free online devices for dictionaries and translation. The English version of LSD Project site is composed of following 4 online services. 1. English-Japanese and Japanese-English dictionaries (WebLSD, WebLSD mini) 2. To make an English-Japanese vocabulary list on a web browser (EtoJ Vocabulary) 3. English-Japanese translation of life science terms (EtoJ) 4. English spell checker of life science and general terms (WebSpell) WebLSD mini is available on iPhone and Android smartphones. @en
language: ja
language: en
publisher: LSDプロジェクト
  type: Organization
  label: Life Science Dictionary Project @en
  address country: Japan @en
  address country: 日本
landing page: https://lsd-project.jp/cgi-bin/lsdproj/ejlookup04.pl
theme: T0019
status: Active @en
status: 稼動中

nbdc00128
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MAGEST

nbdc00128
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MAGEST

MAGEST
type: Dataset
alternative: MAboya ( the ascidian, Halocynthia roretzi ) Gene Expression patterns and Sequence Tags
description: MAGEST is a database of newly identified maternal cDNAs of the ascidian Halocynthia roretzi to examine the mRNA population. Collected 3' and 5' tag sequences of mRNAs and their expression data from whole-mount in situ hybridization in early embryos, as well as additional information are available through this public database. @en
description: ホヤ卵に存在する母性mRNAのESTと各クローンの発現パターンに関するデータを提供しています。
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752271
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592202
distribution: Distribution
  access URL: http://magest.hgc.jp/files/download.html
landing page: http://magest.hgc.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7729
theme: T0024
theme: T0029
theme: T0002
status: Active @en
status: 稼動中

nbdc00129
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MaizeGDB

nbdc00129
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-13
source: Integbio Database Catalog
primary topic: MaizeGDB

MaizeGDB
type: Dataset
alternative: Maize Genetics and Genomics Database @en
description: トウモロコシ研究の総合サイトです。トウモロコシゲノムの配列、変異データ、染色体上でのマッピングデータの他に、研究者の連絡先等の情報を提供しています。
description: MaizeGDB is a integrated database of the crop plant and model organism Zea mays. It contains maps, gene product information, loci and their various alleles, phenotypes (both naturally occurring and as a result of directed mutagenesis), stocks, sequences, molecular markers, references and contact information for maize researchers on worldwide. Moreover, users are able to obtain various community support service bulletin boards including the Editorial Board's list of high-impact papers, information about the Annual Maize genetics Conference and the Jobs board where employment opportunities are posted. @en
language: en
publisher: MaizeGDB TEAM
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17202174
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21565781
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681441
distribution: Distribution
  access URL: http://ftp.maizegdb.org/MaizeGDB/FTP/
landing page: http://www.maizegdb.org/
theme: T0014
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4577
theme: T0024
theme: T0026
theme: T0001
theme: T0007
theme: T0002
theme: T0003
theme: T0021
theme: T0029
theme: T0017
status: Active @en
status: 稼動中

nbdc00130
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-26
source: Integbio Database Catalog
primary topic: MBGD

nbdc00130
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-26
source: Integbio Database Catalog
primary topic: MBGD

MBGD
type: Dataset
alternative: Microbial Genome Database for Comparative Analysis
description: オーソログ解析に基づいて微生物ゲノムの比較解析を行うためのデータベースです。公開されたゲノム全体を含む標準オーソログテーブルに基づいて、各オーソロググループの系統プロファイルの比較などを行えるほか、動的なオーソログ解析機能によって、利用者自身が持つゲノム配列も含めて、興味のある生物種セットに対象を絞った比較を行うこともできます。
description: MBGD is a database with a workbench system for comparative analysis of completely sequenced microbial genomes, mainly for creating orthologous or homologous gene cluster tables. MBGD classifies genomes by the hierarchical clustering method known as UPGMA, using precomputed similarity relationships identified by all-against-all BLAST search. Users can change the set of organisms or cutoff parameters to create their own orthologous groupings. Thus comparative genomics is facilitated from various points of view such as ortholog identification, paralog clustering, motif analysis and gene order comparison. @en
language: en
publisher: 自然科学研究機構 基礎生物学研究所
  type: Organization
  label: National Institute for Basic Biology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17135196
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19906735
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519947
references: http://rdf.ncbi.nlm.nih.gov/pubmed/23118485
distribution: Distribution
  description: view arch.cgi
  access URL: http://mbgd.genome.ad.jp/htbin/view_arch.cgi
landing page: http://mbgd.genome.ad.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2836
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/142796
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5794
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/32281
theme: T0021
theme: T0001
status: Active @en
status: 稼動中

nbdc00131
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: MEPD

nbdc00131
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: MEPD

MEPD
type: Dataset
alternative: Medaka Expression Pattern Database @en
description: This database includes information regarding gene expression patterns in medaka (Oryzias latipes), confirmed by in situ hybridization. It also contains expression data of regulatory sequences. Each data entry has information on the gene name, Ensembl ID, images of the expression pattern, and developmental stage. The database can be searched by gene ID, Ensembl ID, tissue name, and developmental stage. Users can also find organized Medaka anatomical terms (Medaka Fish Ontology; MFO), and the explanatory informations of Medaka developmental stages. @en
description: このデータベースはメダカの遺伝子発現情報をin-situ hybridizationで確認した情報を公開しています。また、制御配列の発現データも収録しています。各データには遺伝子名、Ensembl ID、発現写真、発生ステージの情報が含まれており、遺伝子ID、Ensembl ID、組織名、発生ステージにより検索することができます。その他にもOnotology情報や発達段階の解説ページがあります。
language: en
publisher: The European Molecular Biology Laboratory
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519950
landing page: http://mepd.cos.uni-heidelberg.de/mepd/
theme: T0024
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
theme: T0002
status: Active @en
status: 稼動中

nbdc00132
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: MeSH

nbdc00132
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: MeSH

MeSH
type: Dataset
alternative: Medical Subject Headings @en
description: 文献や、生物学情報の内容を表すキーワードのデータベースです。このキーワードを利用することで関連する生物学情報を得ることができます。キーワードは階層構造をなしており、より詳細に情報をたどることも、より抽象的な検索をすることも可能です。
description: This is a database of keywords representing the content of articles and biological information. The keywords are structured in layers to allow users to find more detailed information or perform abstract searches. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20623263
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15360776
distribution: Distribution
  rights: termscon.html
  access URL: http://www.nlm.nih.gov/mesh/filelist.html
landing page: http://www.ncbi.nlm.nih.gov/mesh
theme: T0019
status: Active @en
status: 稼動中

nbdc00133
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-20
source: Integbio Database Catalog
primary topic: MG Workbench

nbdc00133
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-20
source: Integbio Database Catalog
primary topic: MG Workbench

MG Workbench
type: Dataset
alternative: Microbial Genome Workbench @en
description: The Microbial Genome Workbench (MG Workbench) is a database that enables research into the genomes of Archaea and Bacteria. This repository is specifically focused on information gathered by comparing proteins and genes inter-genomically as well as intra-genomically. A gene may be located by entering its name, synonyms, PID, Swiss-Prot ID or PDB ID and a keyword in a blast search application. A specific microbial genome may also be searched for a short sequence pattern, although this route is stated to be very slow in providing results. Direct access to the genome map of an organism of choice is also given. Information on restriction digestion of DNA and simulated protein digestion by a chosen enzyme is retrievable. @en
description: ゲノム配列が公開されているバクテリアおよび古細菌を対象とした遺伝子の検索や各種解析ツールを提供しています。プロテアーゼによる分解シミュレーション、制限酵素による切断サイトのシミュレーションも行えます。
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.bioscinet.org/cgi-bin/mgw.pl
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00134
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MGC

nbdc00134
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MGC

MGC
type: Dataset
alternative: Mammalian Gene Collection
description: MGC is a full-length cDNA clone database for mammalian genes. It contains information such as gene names, GenBank records, and a link to GenBank. Users can search using gene names or keywords for human, mouse, rat, and bovine genes. Additionally, users can find distributor information for cDNA clones as well as information on vectors. @en
description: 哺乳類の遺伝子全長のcDNAクローンデータベースです。このサイトでは主にヒト、マウス、ラット、ウシの遺伝子名やキーワードで検索でき、そのcDNAクローンの提供先情報などを得ることができます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15088387
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12477932
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15489334
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19767417
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15489330
landing page: http://mgc.nci.nih.gov/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0021
theme: T0017
status: Active @en
status: 稼動中

nbdc00135
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MGI

nbdc00135
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MGI

MGI
type: Dataset
alternative: Mouse Genome Informatics @en
description: This is a comprehensive site for mouse research. The site contains detailed information on mouse genes, gene expression data, polymorphisms and mutations, pathways, data on model rats for hereditary cancers, and phenotypes of each mouse model system. @en
description: マウス研究の総合サイトです。マウス遺伝子に関する情報の他、遺伝子発現データ、多型・変異情報、パスウエイ、遺伝性癌症候群モデルラットに関するデータ、マウス各系統の表現型に関する詳細な情報等を提供しています。
language: en
publisher: The Jackson Laboratory
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19274630
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21062809
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592195
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21282667
distribution: Distribution
  description: index.html
  rights: copyright.shtml
  access URL: ftp://ftp.informatics.jax.org/pub/reports/index.html
landing page: http://www.informatics.jax.org/
theme: T0016
theme: T0014
theme: T0015
theme: T0024
theme: T0026
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: T0003
theme: T0021
theme: T0028
theme: T0029
theme: T0019
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00136
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: miRBase

nbdc00136
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: miRBase

miRBase
type: Dataset
alternative: microRNA database
description: 公開されているmicroRNAの配列について、配列から予測されるmiRNA前駆体のヘアピン構造(mirで示されます)、成熟miRNAの配列(miRで示されます)、文献情報等が登録されています。様々な検索機能が用意されており、キーワード検索、ゲノム位置による検索、クラスター検索、発現実験による検索、ユーザ自身の配列による検索が行えます。全ての配列とアノテーションはダウンロード可能です。
description: miRBase is a database for published microRNA sequences and annotations, which include mature miRNA sequences (indicated by miR), and hairpin structures predicted by sequences that are precursors for miRNA (indicated by mir). A variety of search methods can be used, including by keyword, genomic position, cluster, expression data, and user-provided sequences. Furthermore, these sequences and annotations can be downloaded. @en
language: en
publisher: Faculty of Life Sciences (The University of Manchester)
  type: Organization
  label: Faculty of Life Sciences(The University of Manchester) @en
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: LICENSE
  access URL: http://mirbase.org/ftp.shtml
landing page: http://mirbase.org/
theme: T0021
theme: T0006
status: Active @en
status: 稼動中

nbdc00137
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MitoFish

nbdc00137
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MitoFish

MitoFish
type: Dataset
alternative: Mitochondrial Genome Database of Fish @en
description: MitoFish is a database for the fish mitochondrial genome, which allows users to find data from complete nucleotide sequences of the mitochondrial genomes of fish. Based on the nucleotide sequence data from a fish mitochondrial genome, BLAST homology search (sequence similarity search) of the nucleotide sequence can be conducted against fish complete or complete + partial mitochondrial genome databases. @en
description: DDBJ、GenBank、EMBL に登録された魚類の完全長ミトコンドリア・ゲノム情報の容易な検索を可能にし、あわせて関連情報（記載論文情報、標本情報、生物情報など）を提供します。また、このデータセットを対象に、任意のDNA塩基配列データの相同性検索（BLAST）を行なうことができるので、手元に何らかの魚類から得たミトコンドリアDNA の部分塩基配列データがある場合、それが完全長ミトコンドリアゲノム情報が得られている魚種のどれに一致するか、あるいはどれに類似性が高いかを調べることができ、魚類の種判別や同定への助けが得られます。
language: en
publisher: 東京大学 大気海洋研究所
  type: Organization
  label: The University of Tokyo Atmosphere and Ocean Research Institute @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: license.html
  access URL: http://mitofish.aori.u-tokyo.ac.jp/download.html
landing page: http://mitofish.aori.u-tokyo.ac.jp/
theme: T0021
theme: T0001
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7776
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/117569
status: Active @en
status: 稼動中

nbdc00138
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: miyakogusa.jp

nbdc00138
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: miyakogusa.jp

miyakogusa.jp
type: Dataset
description: This database provides all information and resources involved in the sequencing of Lotus japonicus (Miyakogusa), the first sequenced legume, by The Kazusa DNA Research Institute. Clone list, Genomic map and Insertion tag lines are provided. @en
description: 財団法人かずさDNA研究所は、マメ科植物では世界初となるミヤコグサ（Lotus japonicus）のゲノムの解読に成功しました。「miyakogusa.jp」では、得られた成果や情報を公開しており、ミヤコグサのゲノムクローン(TAC, transformation-competent artificial chromosomes)とそのアノテーション、染色体遺伝子マップ等が掲載されています。マメ科植物は、その根に共生して存在する根粒菌が、空気中の窒素を吸収、固定して宿主（マメ科植物）に供給しています。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18511435
distribution: Distribution
  access URL: ftp://ftp.kazusa.or.jp/pub/lotus/
landing page: http://www.kazusa.or.jp/lotus/index.html
landing page: http://www.kazusa.or.jp/lotus/
theme: T0021
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34305
theme: T0017
status: Active @en
status: 稼動中

nbdc00139
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MMDBJ

nbdc00139
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MMDBJ

MMDBJ
type: Dataset
alternative: Mouse Microsatellite Data Base of Japan @en
description: MMDBJ is a database of mouse microsatellite loci to provide information about simple sequence length polymorphisms (SSLPs) among different strains. MMDBJ features SSLP loci obtained from strains derived from Mus musculus molossinus (Japanese wild mouse). Each record contains polymorphism data, PCR condition and a link to Ensembl Genome Browser web page to view primer sequences. This database also provides a search engine and a linkage map of mouse microsatellite loci. @en
description: マウスのマイクロサテライトマーカーを収集したデータベースで、研究者からの新規データの登録も受け付けています。日本産野生マウス（Mus musculus molossinus)に注目し、マウス系統間の単純配列長多型(SSLP)の相違を示す実験結果を、PCR条件とともに提供しています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15153678
distribution: Distribution
  access URL: http://shigen.nig.ac.jp/mouse/mmdbj/download.jsp
  access URL: http://www.shigen.nig.ac.jp/mouse/mmdbj/download.jsp
landing page: http://www.shigen.nig.ac.jp/mouse/mmdbj/top.jsp
theme: T0021
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00140
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: MOKUROKU

nbdc00140
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MOKUROKU

MOKUROKU
type: Dataset
alternative: 日本産昆虫目録データベース
description: MOKUROKU is a checklist of all the insect species or subspecies recorded from Japan. MOKUROKU was constructed as an online database based on a book written in Japanese; ' A Check List of Japanese Insects '. A species or subspecies is treated as one record in this database, and each record consists of following 5 items; scientific names of family, genus, species (or subspecies), Japanese name (taxon name) and distribution. Users can search insects by keywords from these 5 items. @en
description: 昆虫目録データベース（MOKUROKU)は、日本産の全昆虫について1種または1亜種 (一部1変種を含む)を一つのレコードとしたデータベースです。日本語と英語に対応しています。各レコードには、科名、属名、(亜)種名、和名、分布の５項目を収録しています。
language: ja
language: en
publisher: 九州大学
  type: Organization
  label: Kyushu University @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/mokuroku/
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/mokuroku/index-j.html
theme: T0014
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6656
status: Active @en
status: 稼動中

nbdc00141
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: アサガオホームページ

nbdc00141
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: アサガオホームページ

アサガオホームページ
type: Dataset
title: National BioResource Project Morning glory @en
alternative: National BioResource Project Morning glory
description: アサガオ突然変異系統の収集・保存・提供を行っているページです。系統リスト、画像カタログ、交配系統カタログのほか、遺伝子リストや連鎖地図など、分かりやすい解説ページとして掲載されています。アサガオの栽培方法についても詳細に記されています。
description: National BioResource Project Morning glory collects resources of the Japanese morning glory (Ipomoea nil or Pharbitis nil). Requests for the resources are available by email. genetic data of mutant strains and Ipomoea related species are recorded in a database, and it allows to search strains, gene classes and gene symbols. Users can browse tables of phenotype class, images (seeds, leafs and flower organs), and linkage maps of the Japanese morning glory. @en
language: ja
language: en
publisher: 九州大学 大学院
  type: Organization
  label: Kyushu University @en
  address country: Japan @en
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/asagao/index.jsp
landing page: http://mg.biology.kyushu-u.ac.jp/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/35883
theme: T0029
theme: T0001
theme: T0017
theme: T0021
theme: T0019
status: Active @en
status: 稼動中

nbdc00142
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: MRCD

nbdc00142
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: MRCD

MRCD
type: Dataset
alternative: Microbial Resources and Chemotaxomy Database @en
description: 知的基盤分類番号をIDとする微生物情報のデータベースです。オリジナル論文、旧名（もしあれば）、系統的位置、type strain、分離源、化学分類指標になる各種化学成分、基質利用性、エネルギー獲得様式、16S rDNAのDDBJ/EMBL/GenBankなどへのaccession numberなどの情報がテキストベースで得られます。Type strain（基準株）が微生物菌株保存機関に寄託されている場合、それぞれの機関にリンクが張られています。DDBJ/EMBL/GenBankや関連データベースサイトであるRDPなどにもリンクが張られています。微生物名の他、化学分類指標、系統学的位置、生理学的性質、形態、単離法／培養法、生育環境など様々な条件による検索が可能です。
language: ja
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://riodb.ibase.aist.go.jp/mrcd/servlet/MainServlet
theme: T0014
theme: T0028
theme: T0017
status: 運用終了
status: Closed @en

nbdc00143
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-08-30
source: Integbio Database Catalog
primary topic: Mycoplasma penetrans Genome

nbdc00143
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-08-30
source: Integbio Database Catalog
primary topic: Mycoplasma penetrans Genome

Mycoplasma penetrans Genome
type: Dataset
description: This is the database of the Mycoplasma penetrans genome project. Complete nucleotide sequence, protein sequences and annotation table are available to investigate the pathogenicity of this relatively new pathogen, characterized by the ability to penetrate human cells. Often associated with HIV carriers or infection and possibly involved in the development of immunodeficiency, it can cause urethritis and respiratory disease in humans by itself. @en
description: マイコプラズマ (M. penetrans、M. pneumoniae) のゲノム配列、遺伝子予測結果が掲載されています。M. penetransについては、完全長ゲノム配列、アミノ酸配列、アノテーションテーブルを取得できます。
language: en
publisher: 厚生労働省 国立感染症研究所
  type: Organization
  label: National Institute of Infectious Diseases @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12466555
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12486060
distribution: Distribution
  access URL: https://www.niid.go.jp//Mypet/
landing page: https://www.niid.go.jp//Mypet/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/28227
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00144
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NBRC Culture Catalogue Search

nbdc00144
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-16
source: Integbio Database Catalog
primary topic: NBRC Culture Catalogue Search

NBRC Culture Catalogue Search
type: Dataset
description: This is a site by which the culture catalogue of the Biological Resource Center of the National Institute of Technology and Evaluation (NITE) may be searched for information. A comprehensive amount of data is provided on each of a list of 59 phages. A Sequence search option as well as a Homology search option is available. It is also possible to order cultures from this site. @en
description: NBRC (NITE Biological Resource Center)は、バイオ産業の発展のため、糸状菌、酵母、細菌、放線菌、微細藻類など多様な微生物資源を収集・保存し、提供しています。本サイトでは、試験及び研究開発を行う企業・大学等が、これら資源の検索と詳細情報を確認することができます。
language: ja
language: en
publisher: 独立行政法人製品評価技術基盤機構
  type: Organization
  label: National Institute of Technology and Evaluation @en
  address country: Japan @en
  address country: 日本
landing page: http://www.nbrc.nite.go.jp/NBRC2/NBRCDispSearchServlet?lang=en
landing page: http://www.nbrc.nite.go.jp/NBRC2/NBRCDispSearchServlet?lang=jp
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2763
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33634
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/38254
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3041
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1117
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2830
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/543769
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3035
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2864
status: Active @en
status: 稼動中

nbdc00145
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NBRP Chrysanthemum

nbdc00145
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NBRP Chrysanthemum

NBRP Chrysanthemum
type: Dataset
title: National BioResource Project Chrysanthemum @en
description: 広義キク属の分与、保存を目的としています。属種別の画像が掲載されており、その種類はこのサイトで定義されているAccessionNumberで管理されています。
description: NBRP Chrysanthemum provides resources of plants belonging to the genus Chrysanthemum and closely related genera; the tribe Anthemideae. The resource list consists of wild strains, garden species and experimental strains including interspecific hybrids, intergeneric hybrids and artificial polyploids. Users can search strains by keywords such as a species name, Japanese name, phenotype and karyotype. Search results show information on stock availability and resource types (plant stock, seed stock and culture stock). @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/chrysanthemum/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13422
theme: T0029
theme: T0017
status: Active @en
status: 稼動中

nbdc00146
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: NBRP E.coli Strain (The Cloning Vecter Collection)

nbdc00146
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-11
source: Integbio Database Catalog
primary topic: NBRP E.coli Strain (The Cloning Vecter Collection)

NBRP E.coli Strain (The Cloning Vecter Collection)
type: Dataset
title: NBRP E.coli Strain @en
description: NBRP E.coli Strain stocks mutants and clones of Escherichia coli to distribute to academic researchers and non-academia research users. These resources have been mainly collected and maintained by National Institute of genetics (NIG). The resource list consists of gene mutants (ME Collection, JE Collection and IH E.coli Mutant Collection), clones (ASKA Clone, plasmid and cosmid), genomewide mutants, phage and cloning vector. Users can search available resources using the Resource Type table on the home page and Quick Search at the top of the page. @en
description: 大腸菌や大腸菌組み換えDNA操作ベクター、ラムダファージのコレクションの検索、分与申し込みのサービスを提供しているサイトです。各生物資源に関する情報や、資源利用した時に得られた成果発表に関する情報を提供しています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://www.shigen.nig.ac.jp/ecoli/strain/download/
  access URL: https://shigen.nig.ac.jp/ecoli/strain/download
landing page: https://shigen.nig.ac.jp/ecoli/strain/locale/change?lang=ja
landing page: https://shigen.nig.ac.jp/ecoli/strain/locale/change?lang=en
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0001
theme: T0005
theme: T0017
status: Active @en
status: 稼動中

nbdc00147
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: NBRP Medaka

nbdc00147
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NBRP Medaka

NBRP Medaka
type: Dataset
description: メダカバイオリソースに関する情報を提供しています。組織、発生段階等の情報から絞り込んで目的の資源を分与申し込みすることが可能です。また、Medaka Atlasなどの情報へのリンク、BLAST検索ツールへのリンクも貼られています。
description: NBRP Medaka is a database for offering resources of Medaka (Oryzias latipes) maintained by National Institute for Basic Biology and Niigata University. Medaka resources consist of live-resources (wild populations, related species, inbred strains, mutants and transgenics) and clone libraries (cDNA, BAC and Fosmid). Users can search available resources using the ’Overview for strains’ page, keyword search and Blast search. This database also provides research tools including atlas (Medaka Atlas), phylogenetic trees (Medaka Tree), genome browser (Medaka Map) and laboratory manuals. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: download.jsp
  access URL: https://shigen.nig.ac.jp/medaka/download/download.jsp
  access URL: https://www.shigen.nig.ac.jp/medaka/download/download.jsp
landing page: http://www.shigen.nig.ac.jp/medaka/
theme: T0014
theme: T0029
theme: T0001
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8089
theme: T0003
theme: T0021
theme: T0017
status: Active @en
status: 稼動中

nbdc00148
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: Oryzabase

nbdc00148
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Oryzabase

Oryzabase
type: Dataset
description: Oryzabase is an integrated database that collects information and resources related to rice strains. This database provides following 7 contents; strain stock information, mutants information, chromosome maps, gene dictionary, reference list, fundamental knowledge of rice science and featured links. Users can search available strains from each link of 'Strains' category, and order seeds, plant bodies (only users in Japan) or DNA resources. Oryzabase will receive registration of newly identified rice genes and mutants. @en
description: イネ研究に関連するデータおよびリソースを収集したポータルサイトです。種に関する情報（系統、野生種、突然変異体）、遺伝子発現に関する情報（組織、発生段階との関連）、配列情報（遺伝子、オルガネラ）、マップ（連鎖地図、物理地図、比較地図）、文献情報が掲載されています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: strain
  description: gene
  description: insd
  description: reference
  description: riceId
  access URL: http://www.shigen.nig.ac.jp/rice/oryzabase/download/strain
  access URL: http://shigen.nig.ac.jp/rice/oryzabase/download/strain
landing page: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/locale/change?lang=en
landing page: http://www.shigen.nig.ac.jp/rice/oryzabaseV4/
theme: T0014
theme: T0031
theme: T0024
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4527
theme: T0013
theme: T0017
theme: T0030
theme: T0021
status: Active @en
status: 稼動中

nbdc00149
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: KOMUGI

nbdc00149
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KOMUGI

KOMUGI
type: Dataset
alternative: Wheat Genetic Resources Database KOMUGI
description: コムギの統合データベースです。1996年にコムギ（Triticumと関連種Aegilops）の遺伝資源に関心の高い研究者らにより作成され、現在は系統情報に加えてゲノム関連情報として遺伝子記号のカタログ情報、ESTクローンおよび遺伝子配列情報、さらに各系統の染色体構成や表現型（画像データを含む）などを収録しています。現在、本データベースは2002年に発足した文部科学省：ナショナルバイオリソースプロジェクトにおけるコムギ委員会によって管理されています。
description: KOMUGI is an integrated database of wheat managed by the National BioResource Project (NBRP)-Wheat. This database mainly collects strain information on wheat (the genus Triticum) and related species (the genus Aegilops) including experimental lines. It also contains some accessions of other related species (rye; the genus Secale and oats; the genus Avena), the list of gene symbols, gene sequence data and chromosome maps. Available resources are listed as 'NBRP Strains' and 'NBRP cDNA', then users can order them by using query forms in 'Strains' category and 'cDNA' category, respectively. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: download.jsp
  access URL: http://shigen.nig.ac.jp/wheat/komugi/
  access URL: http://www.shigen.nig.ac.jp/wheat/komugi/
landing page: http://www.shigen.nig.ac.jp/wheat/komugi/
theme: T0016
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4564
theme: T0024
theme: T0001
theme: T0013
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4480
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4496
theme: T0021
theme: T0017
status: Active @en
status: 稼動中

nbdc00150
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NDB

nbdc00150
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NDB

NDB
type: Dataset
alternative: Nucleic Acid Database
description: Nucleic Acid Database Project (NDB) では、核酸の構造情報を収集、配布することを目的としています。各エントリーにつき、核酸配列、構造とその特徴、最初に報告された文献、実験情報、PDBへのリンクなどが表示され、構造座標や構造因子ファイルのダウンロードが可能です。
description: The Nucleic Acid Database Project (NDB) aims to collect and distribute information on nucleic acid structures. Each entry contains information on nucleic acid sequences, its structure and the characteristics, the primary citation, experimental information, as well as a link to PDB. Furthermore, structure coordinates and structure factors can be downloaded from the site. @en
language: en
publisher: The State University of New Jersey
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/1384741
distribution: Distribution
  access URL: http://ndbserver.rutgers.edu/ndbmodule/download_data/downloadIndex.html
landing page: http://ndbserver.rutgers.edu
theme: T0021
theme: T0007
theme: T0005
theme: T0006
theme: T0030
status: Active @en
status: 稼動中

nbdc00151
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NRSub

nbdc00151
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NRSub

NRSub
type: Dataset
alternative: Non-Redundant B.subtilis database
description: NRsub is a database that contains information covering the whole genome of Bacillus subtilis. This site also provides knowledge of codon usage and gene mapping. Information available has been cross-referenced with the SWISS-PROT, ENZYME and HOBACGEN databases. Search can be done by keyword, sequence name, gene accession number, www-query or a full text search. @en
description: 枯草菌に関する情報を提供しているサイトです。シーケンス名、遺伝子アクセション番号、全文検索で検索することが可能です。SWISS-PROT, ENZYME, HOBACGENへの相互参照に加えて、遺伝子マッピング情報やコドンの使用頻度情報も掲載されています。
language: en
publisher: Pole BioInformatique Lyonnais
  type: Organization
  label: Pole Bio-Informatique Lyonnais @en
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8594597
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399801
landing page: http://pbil.univ-lyon1.fr/nrsub/nrsub.html
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
status: 休止
status: Inactive @en

nbdc00152
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: ODB

nbdc00152
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: ODB

ODB
type: Dataset
alternative: Operon DataBase @en
description: 様々な生物種のオペロンの情報を文献から収集し、データベース化しました。また、既知オペロン構造から推測されるオペロン構造もデータベース化しています。さらに、オペロンに関連する遺伝子間距離、マイクロアレイに基づいた遺伝子間の共発現、代謝系などのパスウェイ間での距離、ゲノム間での遺伝子の並びの保存などの情報も統合されています。
description: All known operons from numerous species have been collected from literature and other public databases in this database, which also includes a system to predict operons by user definitions. Operon candidates are provided based on logic operations of the following parameters: intergenic distance, intergenic step, pathway, co-expression, and ortholog. Prediction accuracy can also be obtained. @en
language: en
publisher: 新潟大学 大学院医歯学総合研究科
  type: Organization
  label: Niigata University Graduate School of Medical and Dental Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381886
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21051344
landing page: http://operondb.jp/
theme: T0028
theme: T0024
theme: T0026
theme: T0001
status: Active @en
status: 稼動中

nbdc00153
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: OMIA

nbdc00153
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-06
source: Integbio Database Catalog
primary topic: OMIA

OMIA
type: Dataset
alternative: Online Mendelian Inheritance in Animals @en
description: OMIA is a database of inherited disorders, other (single-locus) traits, and genes in animals which is not include human, mouse and rat because of presence of their own resources. The records contain basical textual information, references, and links to OMIM, PubMed, and gene. The content on the site is manually curated. @en
description: ヒト、マウス以外の動物の遺伝子疾患を収録したデータベースです。テキストによる解説、文献情報、OMIM, PubMed, Geneへのリンク情報が含まれます。手作業によるキュレートが行われています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520001
distribution: Distribution
  rights: disclaimer.shtml
  access URL: http://omia.angis.org.au/download/
landing page: http://omia.angis.org.au/home/
theme: T0015
theme: T0001
theme: T0030
status: Active @en
status: 稼動中

nbdc00154
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: OMIM

nbdc00154
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: OMIM

OMIM
type: Dataset
alternative: Online Mendelian Inheritance in Man @en
description: Johns Hopkins大学のVictor A. McKusick 博士が中心となって記述、編集を行っている、ヒトの遺伝子変異と遺伝病のデータベースです。全ての既知のメンデル型遺伝病と12,000以上の遺伝子に関して、テキスト形式の情報やリファレンスが示されます。MEDLINEやEntrezのリンクも含まれます。
description: OMIM is a database of human disease and genetic information and the online representation of Mendelian Inheritance in Man, a project initiated in the 1960s. The database summarizes heritable traits and provides information on both the trait and experimentally determined genetic causes. The database is manually curated by experts and can be searched by OMIM ID, gene, disease, or phenotype. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18842627
distribution: Distribution
  description: downloads
  rights: copyright
  access URL: http://omim.org/downloads
landing page: http://www.ncbi.nlm.nih.gov/omim
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00155
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-06
source: Integbio Database Catalog
primary topic: ナショナルバイオリソースプロジェクト 病原微生物

nbdc00155
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-06
source: Integbio Database Catalog
primary topic: ナショナルバイオリソースプロジェクト 病原微生物

ナショナルバイオリソースプロジェクト 病原微生物
type: Dataset
title: National Bioresource Project - Pathogenic microbes @en
alternative: National Bioresource Project - Pathogenic microbes
description: National Bioresource Project - 'Pathogenic microbes' collects reliable strains of pathogenic microorganisms (fungi, actinomycetes, bacteria and protozoa) to support education and research in infectious diseases. Contents of 'Database' category including keyword search and 'Animation' category are only available in Japanese, and some resources restrict database access. This database also provides the picture lists of pathogenic fungi and actinomycetes. Requests for distribution and deposition of resources are available by email. This site has been moved to the following URLs (2018.4.1). Pathogenic bacteria: https://pathogenic-bacteria.nbrp.jp/ Pathogenic eukaryotic microorganisms: https://pathogenic-microbes.nbrp.jp/ @en
description: 複数の研究機関で収集、保存されている病原微生物について、各研究機関をネットワーク化することにより、病原微生物遺伝資源の収集、保存、提供体制を構築することを目的としています。細菌/放線菌、真菌、原虫のリソースを検索するための統合データベースが提供されています。 本サイトの病原細菌は https://pathogenic-bacteria.nbrp.jp/ 病原真菌、放線菌、病原原虫は https://pathogenic-microbes.nbrp.jp/ に移転しました (2018.4.1)。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://pathogenic.lab.nig.ac.jp/
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0029
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: 運用終了
status: Closed @en

nbdc00156
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: PDB

nbdc00156
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: PDB

PDB
type: Dataset
alternative: Protein Data Bank @en
description: This is an international public repository for three-dimensional structures and structure coordinates (conformations) of proteins and nucleic acids, and the central database for biological structural data. Data obtained through X-ray crystallography and NMR experiments are stored in PDB. In addition to three-dimensional information of proteins, users can find amino acid sequences, protein-related information on GO, and other compounds bound to the protein. @en
description: タンパク質と核酸の三次元構造の構造座標（立体配座）を蓄積している国際的な公共レポジトリで、生物学的構造データの中心的なデータベースとなっています。X線結晶構造解析やNMRなどで実験的に決定されたデータを蓄積しています。タンパク質の立体構造データの他に、アミノ酸配列、GOといったタンパク質に関する情報やタンパク質に結合している化合物の情報を提供しています。
language: en
publisher: Research Collaboratory for Structural Bioinformatics
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592235
distribution: Distribution
  description: file-format
  rights: http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/policies_references.html
  access URL: ftp://ftp.wwpdb.org/pub/pdb
landing page: http://www.pdb.org/pdb/home/home.do
theme: T0022
theme: T0029
theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00157
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: PDBj

nbdc00157
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: PDBj

PDBj
type: Dataset
alternative: Protein Data Bank Japan
description: 日本蛋白質構造データバンク (PDBj: Protein Data Bank Japan) は、米国の構造バイオインフォマティクス研究共同体 (RCSB)、生物学的磁気共鳴データバンク (BMRB)、および欧州バイオインフォマティクス研究所 (PDBe) と協力し、蛋白質・核酸・糖などの生体高分子の立体構造データベースを国際的なPDBアーカイブとして運営しています。また、派生する様々なデータベースやそれらの解析ツールも提供しています。 タンパク質の構造検索には、PDBML (eXtensible Markup Language：PDBの正式なXMLフォーマット) で記述したPDBデータに基づく関係データベースを使用しているPDBj Mine (http://pdbj.org/mine) がご利用になれます。詳細検索にはSQL文を指定した検索も可能です。 なお、PDBjのデータは日本時間の毎週水曜日午前９時に更新されています。
description: PDBj in Japan maintains a single PDB archive of macromolecular structural data in conjunction with the RCSB, the BMRB in USA and the PDBe in EU as a member of the Worldwide Protein Data Bank. PDBj provides entry search with sequence homology and structure similarity, structural bioinformatics web services such as a molecular visualizing software and tutorials of them. From this website, users can deposit protein structural information solved by X-ray crystallography or NMR spectroscopy in the PDB. For the structure search, you can use PDBj Mine (http://pdbj.org/mine) . The PDBj data are updated on every Wednesday 9 a.m. (Japan time). @en
language: ja
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/27789697
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14634627
distribution: Distribution
  description: http://pdbj.org/help?PID=904
  description: http://pdbj.org/#!help?PID=904
  rights: terms-conditions
  rights: http://pdbj.org/info/terms-conditions?lang=en
  access URL: http://pdbj.org/info/archive?lang=en
  access URL: http://pdbj.org/info/archive
landing page: http://pdbj.org
theme: T0022
theme: T0029
theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00158
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PDBSTR

nbdc00158
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PDBSTR

PDBSTR
type: Dataset
description: This database was reorganized the data of PDB (Protein Data Bank) to suit sequence analysis by the Institute for Chemical Research, Kyoto University. In PDB, there are a number of polypeptide chains per an entry. In this database, it have been separated out into another entries, and added additional information. @en
description: タンパク質立体構造データベースPDBを、京都大学科学研究所で配列解析用に編成しなおしたデータベースです。PDBの１つのエントリーには複数のポリペプチド鎖がふくまれるので、これを別々のエントリーにし、同時に付加情報をつけています。
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/dbget-bin/www_bfind?pdbstr
theme: T0021
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00159
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: PEC

nbdc00159
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PEC

PEC
type: Dataset
alternative: Profiling of E. coli Chromosome
alternative: Profiling of Escherichia coli chromosome @en
description: 大腸菌ゲノムの全体像を明らかにするために、染色体上の全遺伝子について、特に実験的な機能解析に重要な情報を集積させる目的で構築したデータベースです。各遺伝子につき、名前、位置および向き、生育に必須か否か（文献情報を基に分類）、関連する大腸菌株の情報、既知の欠失変異株の情報、ホモロジー解析結果、ドメイン・モチーフ情報、相同遺伝子、核酸およびアミノ酸配列が掲載されています。ゲノムを欠損させた632種の株の情報も掲載されています。
description: PEC is a database for characterization of the E. coli genome and each gene's function. This database features gene classification based on essentiality for cell growth of E. coli using information from research reports and mutation studies. Users can search genes or deletion mutations by a keyword, genomic location, length and the classification. Search results show information on strains related to each gene or deletion, and online requests for them are available via links to the NBRP E.coli Strain web pages. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18392982
distribution: Distribution
  access URL: http://www.shigen.nig.ac.jp/ecoli/pec/download.jsp
  access URL: http://shigen.nig.ac.jp/ecoli/pec/download.jsp
landing page: http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00160
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PEDANT3 database

nbdc00160
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PEDANT3 database

PEDANT3 database
type: Dataset
alternative: a Protein Extraction, Description and Analysis Tool @en
description: PEDANT 3 is a database of information regarding the extraction, description and analysis of proteins. It contains this information for a variety of Archaeal, Bacterial, Eukaryotic, Fungal, Metazoan, Viral and Plant species. Available data on protein function includes the results of Blast similarity searches against known non-redundant protein sequences and searches for motif similarities in the Pfam, BLOCKS and PROSITE databases. The cellular roles and functions are predicted by means of BLAST searches against protein sequences of which the function is known. A keyword search option is also available. @en
description: 数多くの解析ツールで自動的に解析されたゲノムシーケンス情報を提供しています。このサイトには事前に計算されて得られた相同マトリクスデータベースがあり、新しくシーケンスされたゲノム情報に対しても解析をすぐに行うことができるようになっています。
language: en
publisher: German Research Center for Environmental Health
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18940859
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519983
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608204
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17148486
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11222261
landing page: http://pedant.gsf.de/
theme: T0021
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00161
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PEDE

nbdc00161
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: PEDE

PEDE
type: Dataset
alternative: Pig Expression Data Explorer
description: ブタのゲノム (コンティグ)やcDNA、cSNP (cDNA上のSNP)の配列情報を格納したデータベースです。絞り込み検索により配列やその注釈情報 (他種の配列との類似性検索結果等)を参照できます。また配列のダウンロードやお手持ちの配列との類似性検索 (BLAST)もできます
description: This database provides sequencing information for genome (contigs), cDNAs and cSNPs (SNPs on cDNAs) on pig. It allows users to search with filters for comparing sequences or annotations (for example, similarity searches between different species). Sequences can be downloaded and similarity searches (BLAST) can be performed with user-provided sequences. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17145712
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681463
distribution: Distribution
  rights: disclaimer.html
  access URL: http://pede.dna.affrc.go.jp/download/download.html
landing page: http://pede.dna.affrc.go.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00162
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PEPTIDOME

nbdc00162
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: PEPTIDOME

PEPTIDOME
type: Dataset
description: PEPTIDOME is a database for endogenous peptides in cells, tissues and body. PEPTIDOME contains molecular and physiological information of the peptides obtained from brains of mouse, pig and rat. This database provides search engines of endogenous peptides and literatures. Users can search peptides by amino acid sequences or keywords such as names, physicochemical properties, natural abundance and biological activities. @en
description: 生体内のペプチドを液体クロマトグラフィや質量分析で網羅的に分離・同定し、それらの電荷、疎水性、分子量とともに整理しています。
language: ja
language: en
publisher: 国立循環器病センター研究所
  type: Organization
  label: National Cardiovascular Center Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.peptidome.jp/index-j.html
landing page: http://www.peptidome.jp/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0023
theme: T0010
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0018
status: 休止
status: Inactive @en

nbdc00163
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-19
source: Integbio Database Catalog
primary topic: Pfam

nbdc00163
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-19
source: Integbio Database Catalog
primary topic: Pfam

Pfam
type: Dataset
description: Pfam Version 26.0 is a comprehensive database of protein families containing multiple sequence alignments and HMMs. This repository provides data on 13,672 protein families. The site can be searched with a known protein sequence for matching families. Options to search for a Pfam family, clan, sequence or structure are available. A keyword search option is also provided. @en
description: 現在最もよく整備されたタンパク質ドメインデータベースの一つで、膨大な数のタンパク質ファミリーのコレクションを保持しています。手作業で分類を行った高品質のPfam-Aと、機械的に分類を行ったPfam-Bから構成されています。最大の特徴は、検索システムとしてHMMERというプログラムを使用している点であり、これにより高速で精度の高いモチーフの検索を可能にしています。
language: en
publisher: EMBL-EBI
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381856
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22127870
references: http://rdf.ncbi.nlm.nih.gov/pubmed/26673716
distribution: Distribution
  rights: about
  access URL: ftp://ftp.ebi.ac.uk/pub/databases/Pfam
landing page: http://pfam.xfam.org
theme: T0021
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00164
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PharmGKB

nbdc00164
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PharmGKB

PharmGKB
type: Dataset
alternative: Pharmacogenomics Knowledge Base
description: PharmGKB is a database of genotype-drug response knowledge. The database contains information about genes, diseases, and drugs independently and information on how the three factors interact. PharmGKB is curated by scientists and engineers with expertise in pharmacogenomics. Bulk data is available for download. @en
description: 薬物応答におけるヒトの遺伝的変異の影響に関する知識を蓄積しているデータベースです。文献より、医薬品や低分子、ジェノタイプ、フェノタイプ、PK/PD、臨床情報、パスウエイの情報を抽出し、重要なファーマコゲノミクス(PGx)遺伝子や薬物パスウエイのデータを集約しています。
language: en
publisher: Stanford University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22103613
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18949600
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752281
distribution: Distribution
  description: downloadClinicalAnnotationsHelp
  description: downloadRelationshipsHelp
  description: downloadVariantAnnotationsHelp
  rights: relationshipsLicense.jsp
  rights: annotationsLicense.jsp
  rights: policies
  access URL: http://www.pharmgkb.org/downloads/
  access URL: https://www.pharmgkb.org/downloads/
landing page: http://www.pharmgkb.org/
theme: T0015
theme: T0012
theme: T0026
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0011
theme: T0019
status: Active @en
status: 稼動中

nbdc00165
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PHYSCObase

nbdc00165
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PHYSCObase

PHYSCObase
type: Dataset
description: PHYSCObase is a database for sharing information on the moss Physcomitrella patens, which provides a simple system for studying many traits shared with flowering plants. All Physcomitrella DNA sequences in public databases as well as expressed sequence tags (EST) are available. Searches are conducted by EST, genomic sequence, or full-length cDNA with BLAST. The default dataset is PHYSCObase contigs, which contains all assembled sequences and exhibits high sensitivity. PHYSCObase clones and PHYSCObase contigs new datasets are also available. @en
description: 無処理、オーキシン処理、サイトカイニン処理の原糸体由来のヒメツリガネゴケ完全長cDNAライブラリーから得られた８万以上のEST配列や相同性検索結果、実験プロトコルを公開しています。ヒメツリガネゴケのmRNA、contigの配列、同一クローン由来の5'ESTと3'ESTを連結させてペア化した塩基配列のダウンロードファイルや、ヒメツリガネゴケ全配列に対するBLAST検索機能も提供しています。
language: en
publisher: 自然科学研究機構 基礎生物学研究所
  type: Organization
  label: National Institute for Basic Biology @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://moss.nibb.ac.jp/data/
landing page: http://moss.nibb.ac.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3218
theme: T0002
theme: T0018
theme: T0030
status: Active @en
status: 稼動中

nbdc00166
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Physcomitrella patens Full-Length cDNA Clone Database Search

nbdc00166
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Physcomitrella patens Full-Length cDNA Clone Database Search

Physcomitrella patens Full-Length cDNA Clone Database Search
type: Dataset
description: 基礎生物学研究所より寄託を受けたヒメツリガネゴケ完全長cDNAクローンのキーワード検索ができます。キーワードには、リソース番号（BRC）、DDBJ accession number、clone name (NIBB)を指定することが可能です。
description: This RIKEN BioResource Center database is called Physcomitrella patens (moss) full-length cDNA clones, is closely related to the PHYSCObase database, and provides Physcomitrella DNA sequences. A total of 149,363 clones have been deposited, and are available for search by keyword or BLAST. @en
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18079367
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12808149
landing page: http://www.brc.riken.jp/lab/epd/catalog/p_patens.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3218
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00167
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: PIR

nbdc00167
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: PIR

PIR
type: Dataset
alternative: Protein Information Resource
description: PIR is an integrated public bioinformatics resource that supports proteomic and genomic research. Users can find information such as protein names, gene names, protein function, subunits, as well as links to citations, DNA sequences, ontology, pathways, and other related data. @en
description: タンパク質とゲノムの研究をサポートする統合公開バイオインフォマティクスリソースです。PIRは、1984年にタンパク質配列の同定とアノテーションをサポートするためのリソースとしてNational Biomedical Research財団(NBRF)によって設立されました。今日、PIRはプロテオミクスとゲノムクスのデータ統合やタンパク質アノテーションの標準化をサポートするためのリソースとして世界のさきがけとして情報を提供しています。
language: en
publisher: Georgetown University Medical Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520019
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752247
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592177
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125041
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17569631
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10869023
distribution: Distribution
  description: linkpir.shtml
  rights: linkpir.shtml
  access URL: http://pir.georgetown.edu/pirwww/download/
landing page: http://pir.georgetown.edu/
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00168
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: New PLACE

nbdc00168
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: New PLACE

New PLACE
type: Dataset
alternative: A Database of Plant Cis-acting Regulatory DNA Elements
description: 高等植物遺伝子のプロモーター等の発現制御に関わる領域の塩基配列モチーフを論文から収集し、解説や文献、PubMedへのリンク、国際塩基配列データベースのアクセッション番号などを付加したデータベースです。ユーザ自身の配列からモチーフを検索するシグナルスキャン検索や相同性検索、キーワードによる検索が可能です。
description: This database collects published base sequence motifs associated with gene expression control regions, such as promoters, in higher plants and adds interpretations, publications, links to PubMed, and DDBJ/EMBL/GenBank accession numbers. Users can perform a signal scan search for motifs from user-provided sequences as well as homology and keyword searches. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847208
distribution: Distribution
  description: https://sogo.dna.affrc.go.jp/cgi-bin/sogo.cgi?sid=&lang=en&pj=640&action=page&page=newplace
  access URL: https://sogo.dna.affrc.go.jp/cgi-bin/sogo.cgi?sid=&pj=640&lang=en&action=show&key=VB3MX5HLOE
  access URL: https://sogo.dna.affrc.go.jp/cgi-bin/sogo.cgi?sid=&pj=640&lang=en&action=show&key=OMCDXQCKJK
landing page: https://sogo.dna.affrc.go.jp/cgi-bin/sogo.cgi?sid=&lang=en&pj=640&action=page&page=newplace
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0001
theme: T0030
status: Active @en
status: 稼動中

nbdc00169
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Plant snoRNA Database

nbdc00169
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Plant snoRNA Database

Plant snoRNA Database
type: Dataset
description: 植物の核小体低分子RNAに関するデータベースを提供しているサイトです。配列情報、発現データ、メチル化偽ウリジン化領域や遺伝子バリエーションの数といった情報が提供されています。
description: Plant snoRNA Version 1.2 is a database that combines information of the Arabidopsis genome gathered during 3 separate computerbased searches for box C/D snoRNA genes with the results from ncRNA studies added. This list of snoRNAs were applied to the genomes of a variety of non-Arabidopsis plant species and thus assisted in the identification of more or less 250 genes from these species. The database includes the alignment sequences of these 250 genes. The content of the database is presented in a series of tables. The sequences can be downloaded in FASTA file format. @en
language: en
publisher: Scotthish Corp Research Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11469857
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9578473
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12136108
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520043
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11780637
references: http://rdf.ncbi.nlm.nih.gov/pubmed/223845
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9312032
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11706161
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11266566
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9596627
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10380797
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8799814
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10829025
references: http://rdf.ncbi.nlm.nih.gov/pubmed/4447901
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9664033
landing page: http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3218
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4513
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3055
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4577
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4558
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3880
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/55188
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4565
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/161934
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3544
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/283673
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3352
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3225
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4113
status: Active @en
status: 稼動中

nbdc00170
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PMD

nbdc00170
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PMD

PMD
type: Dataset
alternative: Protein Mutant Database
description: PMD is a collections of literature data related to natural and artificial mutants for all kinds of proteins except members of the globin and immunoglobulin families. PMD treats an article as one entry, and each entry contains data about one or more protein mutants. This database allows users to search articles by keywords or amino acid sequences using BLAST. Each entry in search results shows details of the article (authors, journal, MEDLINE link, etc) and mutation (the position of amino acid substitution, insertion or deletion, kind of mutations, functional or structural features, etc). The authors of articles in academic journals can submit protein mutant data to PMD. @en
description: タンパク質工学への貢献を目的として作られた文献データベースです。対象は、自然変異、人工変異、ランダム変異、部位指定変異などの全ての変異体を含み、グロビン属と免疫グロブリン属以外の全てのタンパク質としています。各エントリ（文献）には、変異の位置、導入したアミノ酸種などが簡潔に表現され、変異の結果、生じた機能や安定性の変化が記述されています。また、SwissprotやPIRなどのタンパク質配列データベースのリンクが掲載されています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8073043
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847227
distribution: Distribution
  description: pmddoc-j.html
  description: pmddoc.html
  access URL: ftp://spock.genes.nig.ac.jp/pub/pmd/
landing page: http://pmd.ddbj.nig.ac.jp/~pmd/pmd.html
landing page: http://pmd.ddbj.nig.ac.jp/~pmd/pmd-j.html
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00171
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Polymorphism of Microsatellite Markers

nbdc00171
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-08-07
source: Integbio Database Catalog
primary topic: Polymorphism of Microsatellite Markers

Polymorphism of Microsatellite Markers
type: Dataset
description: 日本人におけるマイクロサテライトマーカーヘテロ接合度の情報（4868マーカー）をデータベース化したものです。日本人集団を対象とした連鎖解析や相関解析に有用なマーカー選択の基盤を整備しました。
description: Polymorphism of Microsatellite Markers is a database of genotypic information on microsatellite loci in the Japanese population. This database contains data on location, heterozygosity, the number of alleles and repeat unit for each locus. It treats 4868 microsatellite markers of 64 normal Japanese individuals. The website summarized the datasets in a table representing the number of microsatellite loci, the average number of alleles per locus and average of heterozygosity per locus on each chromosome. @en
language: ja
language: en
publisher: 九州大学 生体防御医学研究所
  type: Organization
  label: Kyushu University Medical Institute of Bioregulation @en
  address country: Japan @en
  address country: 日本
landing page: http://www002.upp.so-net.ne.jp/kyama-Q/MS.html
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00172
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PRF

nbdc00172
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PRF

PRF
type: Dataset
alternative: Protein Research Foundation @en
description: タンパク質研究奨励会のホームページです。タンパク質文献データベースである「PRF/LITDB」、アミノ酸配列データベースである「PRF/SEQDB」、合成物質データベースである「PRF/SYNDB」が掲載されています。PRF/LITDBは、ペプチドを主題として扱っている文献を収集し、抄録を登録しています。アミノ酸やペプチドの分析手法に関する文献も収録対象となっています。PRF/SEQDBは、短いペプチドの配列や遺伝子の配列から予測されるアミノ酸配列も含んでいます。また、PRF/SYNDBは、化学合成されている非天然アミノ酸・アミノ酸誘導体・ペプチドに関するデータベースです。文献情報、構造とあわせて化学構造式の図も表示されます。いずれのデータベースも文献より情報を収集しています。
description: PRF is a collection of the information related to amino acids, peptides and proteins and making databases. It consists of there databases; Literature Database (PRF/LITDB), Peptide/Protein Sequence Database (PRF/SEQDB) and Synthetic Compounds Database (PRF/SYNDB). PRF/LITDB contains information of articles dealing with peptides from scientific journals accessible in Japan. PRF/SEQDB contains amino acid sequences of peptides and proteins, including sequences predicted from genes. Users are also search literature in which the sequence is presented. In PRF/SYNDB, unnatural amino acids, amino acid derivatives and chemically synthesized peptides are registered. @en
language: ja
language: en
publisher: 財団法人蛋白質研究奨励会
  type: Organization
  label: Protein Research Foundation @en
  address country: Japan @en
  address country: 日本
landing page: http://www.prf.or.jp/
landing page: http://www.prf.or.jp/index-e.html
theme: T0021
theme: T0031
theme: T0007
theme: T0018
theme: T0030
status: Active @en
status: 稼動中

nbdc00174
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: ProDom

nbdc00174
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: ProDom

ProDom
type: Dataset
description: ProDom is an extensive database providing information on protein domain families. It was created automatically by performing a global comparison of all the protein sequences that could be found. The database can be searched by means of accession number, SWISS-PROT/TrEMBL identifier, or keywords. The site also provides access to related databases namely InterPro, PROSITE, PFAM and PDB. The ProDom domains may also be viewed on 3D structures created by the graphical interface. @en
description: Swiss-ProtとTrEMBLのデータから自動生成したタンパク質ドメインファミリーのデータベースです。ProDomデータベースはInterProプロジェクトの一部です。
language: en
publisher: Rhone-Alpes Bioinformatics Center
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592243
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9009835
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12230033
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847197
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608179
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399865
landing page: http://prodom.prabi.fr/prodom/current/html/home.php
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00175
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-06-19
source: Integbio Database Catalog
primary topic: ProMode-Elastic

nbdc00175
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-19
source: Integbio Database Catalog
primary topic: ProMode-Elastic

ProMode-Elastic
type: Dataset
description: ProMode-Elastic is a database of normal mode analysis of PDB data using elastic network model in torsional angle space. Normal mode analysis are performed by unique developed program, PDBETA. It provides the following information; 1) Fluctuation of atoms and Fluctuation of dihedral angles. Time average and data for the 3 lowest-frequency normal modes are given by graphs. 2) Correlation between fluctuating atoms. Time average and data for the 10 lowest-frequency normal modes are given by a triangle map. Furthermore, a distance map between residues are given by a triangle map. 3) Animation of fluctuating molecules displayed on the viewers, jV (PDBj) and Jmol, for the 10 lowest-frequency normal modes. GIF animation is also available. 4) Displacement vectors exhibited on the viewers, jV (PDBj) and Jmol, for the 10 lowest-frequency normal modes. Moreover, static images for displacement vectors are presented. In this database, some numerical data are downloadable. @en
description: 基準振動解析によって得られたタンパク質立体構造の動的構造に関するデータを集めたデータベースです。タンパク質分子が基準振動モードでゆらぐ様子を、無料のプラグインChimeを使うことによって、アニメーションで観察するすることができます。Chimeのコマンドを利用して、分子の色を変えたり、表示方法を変えたりすることも可能です。基準振動解析の結果から定義された動的なドメインと、それら相互の運動をらせん運動として解析した結果も Chimeで表示されます。 PDBj (http://integbio.jp/dbcatalog/record/nbdc00157) が提供するサービスの１つです。
language: ja
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Waseda University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15059828
landing page: http://pdbj.org/promode-elastic
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00176
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: ProNIT

nbdc00176
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: ProNIT

ProNIT
type: Dataset
alternative: Thermodynamic Database for Protein-Nucleic Acid Interactions
description: 実験的に決定されたタンパク質-核酸間の熱力学的相互作用データを収録したデータベースです。タンパク質情報、核酸情報、文献情報、実験条件、熱力学的パラメータ（結合定数、自由エネルギー変化、エンタルピー変化、熱容量変化）が含まれています。
description: The ProNIT database provides data on experimentally determined thermodynamic interactions between proteins and nucleic acids. The properties of the interacting protein and nucleic acid, reference materials, and thermodynamic parameters like binding constants, changes in free energy, enthalpy and heat capacity are available. Thermodynamic knowledge of proteins is as fundamental as sequence and structural information, because proteins behave according to the law of thermodynamics. Biological function of proteins can thus be studied. @en
language: en
publisher: 九州工業大学
  type: Organization
  label: Kyushu Institute of Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11724731
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11987161
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381846
distribution: Distribution
  rights: pronit copyright.php
  access URL: http://www.abren.net/pronit/pronit_download.php
landing page: http://www.abren.net/pronit/
landing page: http://gibk26.bio.kyutech.ac.jp/jouhou/pronit/pronit.html
theme: T0021
theme: T0026
theme: T0007
theme: T0005
status: 休止
status: Inactive @en

nbdc00177
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: ProTherm

nbdc00177
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: ProTherm

ProTherm
type: Dataset
alternative: Thermodynamic Database for Protein and Mutants @en
description: The data in the ProTherm database include thermodynamic parameters such as Gibbs free energy change, enthalpy change, heat capacity change, transition temperature etc., for wild type and mutant proteins that are important for understanding the structure and stability of proteins. There is also information about the secondary structure and accessibility of wild type residues, experimental conditions (pH, temperature, buffer, ion and protein concentration), measurements and methods used for each data, and activity information (Km and Kcat). @en
description: 正常蛋白質及び実験的に作成した変異蛋白質の熱力学データ（ギブスの自由エネルギー変化、エンタルピー変化、変性温度、水中での変性温度等）を文献から抽出し、収録したデータベースです。蛋白質の立体構造や安定性を理解するうえで重要です。二次構造や野生型残基へのアクセシビリティ、実験条件（pH、温度、バッファー、イオン、タンパク質濃度）、測定方法、活性情報（Km、Kcat）、文献情報等も含まれています。
language: en
publisher: 九州工業大学
  type: Organization
  label: Kyushu Institute of Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681373
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592247
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847203
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752320
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11987161
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381846
distribution: Distribution
  rights: protherm copyright.php
  access URL: http://www.abren.net/protherm/protherm_download.php
landing page: http://gibk26.bio.kyutech.ac.jp/jouhou/Protherm/protherm.html
landing page: http://www.abren.net/protherm/
theme: T0023
theme: T0007
theme: T0018
status: 休止
status: Inactive @en

nbdc00178
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: Pseudogene.org

nbdc00178
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: Pseudogene.org

Pseudogene.org
type: Dataset
description: ヒトの偽遺伝子に関する情報を得られるサイトです。
description: Pseudogene.org is a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase. It contains annotations, nucleotide sequences, amino acid sequence, individual sequence alignment about Eukaryote and Prokaryote pseudogenes and pseudomotifs. Pseudogenes are analyzed using sequence alignment programs (such as FASTA or BLAST) to detect matching regions in the nucleotide sequence. @en
language: en
publisher: Yale University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17099229
distribution: Distribution
  access URL: http://www.pseudogene.org/databases.html
landing page: http://www.pseudogene.org/
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00179
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PubMed

nbdc00179
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PubMed

PubMed
type: Dataset
description: This database contains bibliographic information from journal articles in the field of life science as well as MEDLINE (title, authors, journal name, abstracts). Links are provided for articles with free access to the full article. @en
description: MEDLINEおよび生命科学分野のジャーナル文献の書誌情報（タイトル、著者名、雑誌名、抄録など）を収録したデータベースです。全文をフリーで公開している文献については、提供サイトへのリンクが張られています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.ncbi.nlm.nih.gov/pubmed
theme: T0030
status: Active @en
status: 稼動中

nbdc00180
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-03-12
source: Integbio Database Catalog
primary topic: QFBASE

nbdc00180
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-03-12
source: Integbio Database Catalog
primary topic: QFBASE

QFBASE
type: Dataset
title: QFbase @en
alternative: Macaca fascicularis cDNA database @en
alternative: カニクイザルcDNAデータベース
description: QFbase is a cDNA database of the crab-eating macaque (Macaca fascicularis). QFbase contains EST and full-length sequences of macaque cDNAs obtained from brain, testis, bone marrow, liver, pancreas, thymus, heart, spleen, and kidney. The clones can be searched by keywords or cDNA sequences using BLAST, and requests for some clones are available through the HSRRB (Human Science Research Resource Bank) website. This database also provides human-macaque alignments of coding sequences and genome browser (QFbase-GBrowse) mapping the cDNA clones on the rhesus macaque genome. @en
description: カニクイザル (Macaca fascicularis) の脳、精巣、肝臓、骨髄、脾臓、膵臓、腎臓、心臓、胸腺由来のオリゴキャッピングcDNAライブラリーの情報を提供しています。約120,000の5'末端配列 (5'-EST) 、約22,000の3'末端配列、約9,600の全長cDNA配列が現在登録されています。配列はヒト標準遺伝子 (RefSeq) 配列とのホモロジーによって整理されています。現在、ヒト遺伝子名からの検索またはBLASTサーチによるホモロジー検索により、目的のクローンを探すことが出来ます。
language: ja
language: en
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  label: National Institutes of Biomedical Innovation, Health and Nutrition @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://gene.nibiohn.go.jp/qfbase/download.html
landing page: http://gene.nibiohn.go.jp/qfbase/index.html
landing page: http://gene.nibiohn.go.jp/qfbase/index_j.html
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9541
status: Active @en
status: 稼動中

nbdc00181
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RAD

nbdc00181
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RAD

RAD
type: Dataset
alternative: Rice Annotation Database
description: イネゲノム研究プログラム(RGP)で蓄積されたイネゲノム(1,3,4&10番染色体)のアノテーション情報及び包括的なゲノム解析情報を提供しています。ゲノム上の予測遺伝子や完全長cDNAのアノテーション情報をグラフィカルに参照できます。
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608281
landing page: http://golgi.gs.dna.affrc.go.jp/SY-1102/rad/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0001
theme: T0002
status: 運用終了
status: Closed @en

nbdc00182
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-01-06
source: Integbio Database Catalog
primary topic: RAP-DB

nbdc00182
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-06
source: Integbio Database Catalog
primary topic: RAP-DB

RAP-DB
type: Dataset
alternative: Rice Annotation Project DataBase
description: イネアノテーションプロジェクト(RAP)によるイネゲノムの高精度注釈(アノテーション)情報を収録したデータベースです。アノテーションビューア(GBrowse)により、アノテーション情報をグラフィカルに参照できます。また、ユーザー自身の配列とイネゲノム配列の類似性検索(BLAST,BLAT)を行うことができます。
description: This database contains highly accurate annotations on the rice genome provided by the rice annotation project (RAP). Information can be viewed graphically using the annotation viewer (GBrowse). Additionally, similarity searches (BLAST, BLAT) can be performed with user-provided sequences against the rice genome. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381971
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17210932
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16100779
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17035354
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17210233
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18089549
distribution: Distribution
  description: irgsp1.html
  access URL: http://rapdb.dna.affrc.go.jp/download/irgsp1.html
landing page: http://rapdb.dna.affrc.go.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00183
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-06-05
source: Integbio Database Catalog
primary topic: RARGE

nbdc00183
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-06-05
source: Integbio Database Catalog
primary topic: RARGE

RARGE
type: Dataset
alternative: RIKEN Arabidopsis Genome Encyclopedia @en
description: The RARGE database was created to enhance the RIKEN Arabidopsis resource, which provides full-length cDNAs, transposon mutants and microarray experiments. Users can search BLAST for homogeneous comparison of a queried sequence with Arabidopsis Full-length cDNAs and the Ac/Ds Transposon Tagging Lines, as well as full-length DNAs, transposon mutants, microarray, genome map, alternative splicing and transcription factor (RARTF) and the phenotypic information of transposon mutants (RAPID) and nuclear-encoded chloroplast proteins. @en
description: シロイヌナズナの完全長cDNAと変異株に関するサイトです。cDNAの遺伝子名、配列、関連する変異株の情報や、変異株のフェノタイプ、変異位置、3'末端配列の情報が収録されています。キーワード検索の他、フェノタイプによる変異株の検索とゲノムマップによるブラウズが可能です。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608280
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24272250
landing page: http://rarge-v2.psc.riken.jp
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0031
theme: T0024
theme: T0001
theme: T0002
theme: T0021
status: Active @en
status: 稼動中

nbdc00184
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: RDP

nbdc00184
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: RDP

RDP
type: Dataset
alternative: The Ribosomal Database Project
description: This database is a collection of rRNA sequences for fungai, bacteria and archaea. The site provides a variety of analytical tools, including rRNA sequence alignments, similarity search tools, and classification of species from rRNA sequences. @en
description: 細菌及び古細菌のrRNA配列を収めたデータベースです。rRNA配列のアラインメントの他に、類似配列検索ツール及びrRNA配列から生物種分類を行う解析ツール等を提供しています。
language: en
publisher: Michigan State University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125082
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7524021
references: http://rdf.ncbi.nlm.nih.gov/pubmed/1598241
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9016515
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19004872
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847171
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8594608
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520046
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8332524
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592216
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608200
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17090583
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24288368
distribution: Distribution
  description: resources.jsp
  rights: license
  access URL: http://rdp.cme.msu.edu/misc/resources.jsp
landing page: http://rdp.cme.msu.edu/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0027
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00185
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-26
source: Integbio Database Catalog
primary topic: REACTOME

nbdc00185
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-26
source: Integbio Database Catalog
primary topic: REACTOME

REACTOME
type: Dataset
description: ヒトの生体内の主要反応経路や生化学反応を整備したデータベースです。ヒト以外の20生物種のデータも格納しており、ヒトとの比較ができます。ここに収録されている情報は、それぞれの分野の専門家が編集しているため、非常に信頼性の高いデータベースです。代謝パスウェイ、シグナル伝達や膜輸送、感染など様々なパスウェイが扱われており、SBGN (Sytem Biology Graphical Notation)形式で視覚化されています。パスウエイ解析、生物種間比較、発現解析も行えます。
description: REACTOME is a database of human pathways for basic research, genome analysis, pathway modeling, systems biology and education. It contains manually curated and peer-reviewed pathway data which are annotated by expert biologists, in collaboration with Reactome editorial staff and cross-referenced to many bioinformatics databases. This database provides an intuitive website to navigate pathway knowledge and a suite of data analysis tools to support the pathway-based analysis of complex experimental and computational data sets. The curated human pathway data are available to infer orthologous events in 20 non-human species including mouse, rat, chicken, worm, fly, yeast, plant and bacteria. Using species comparison tool, users are able to compare predicted pathways with those of human to find reactions and pathways common to a selected species and human. @en
language: en
publisher: Reactome Team
  type: Organization
  label: Reactome team @en
  address country: Global
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608231
references: http://rdf.ncbi.nlm.nih.gov/pubmed/29145629
distribution: Distribution
  description: download-data
  rights: license
  access URL: https://reactome.org/download-data
landing page: https://reactome.org
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/44689
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1280
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1773
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8364
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/59729
status: Active @en
status: 稼動中

nbdc00186
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: READ

nbdc00186
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: READ

READ
type: Dataset
alternative: Riken Expression Array Database @en
description: 理研マウスcDNAマイクロアレイで取得した遺伝子発現データのデータベースです。実験情報とデータが登録されており、Web画面上でデータの抽出やグラフィカル表示機能を提供しています。 2013年に全てのREAD search serviceは終了しました。このサービスのraw filesは http://read.gsc.riken.jp/dist からダウンロードできます。
description: READ is a database of mouse expression studies that allows users to explore gene expression patterns in up to 49 mouse tissues. In addition to gene data, users can also use READ to find other genes with similar expression patterns in a selected range of tissues. A BLAST function is also provided so that a sequence can be searched to find matching genes, which then will be linked to relevant expression information. READ service were terminated in 2013, and users can download the raw data of this service from ' http://read.gsc.riken.jp/dist '. @en
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11226216
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752296
distribution: Distribution
  description: 00README.txt
  access URL: http://read.gsc.riken.jp/dist
landing page: http://read.gsc.riken.jp
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
status: 運用終了
status: Closed @en

nbdc00187
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: RefSeq

nbdc00187
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: RefSeq

RefSeq
type: Dataset
alternative: Reference Sequence
description: 異なる生物種由来の冗長性を排除したDNA, RNA, タンパク配列を収録したデータベースです。プラスミド、オルガネラ、ウイルス、古細菌、真正細菌、真核生物のアノテーション付けされた配列が含まれています。生物種ごとに、標準となる配列の包括的データセットを提供することを目的としています。配列の情報源はGenBank由来ですが、それらの中から情報を統合して標準となる配列を提供しています。
description: RefSeq is a database of standard reference genomic, transcript, and protein sequences. The database contains consensus sequence data for over 20,000 organisms and over 27 million proteins and is designed to provide a common basis for experimental studies that can be searched using accession ID, keyword, or BLAST. Bulk data is available for FTP download. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22121212
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18927115
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592200
distribution: Distribution
  description: refseq
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/refseq/
  access URL: ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/
landing page: http://www.ncbi.nlm.nih.gov/RefSeq
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/12884
theme: T0001
theme: T0013
status: Active @en
status: 稼動中

nbdc00188
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RGD

nbdc00188
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: RGD

RGD
type: Dataset
alternative: The Rat Genome Database @en
description: This is a comprehensive site for rat genome researches. In addition to information on rat genes, the site contains information on rat strains, data on rat models for disease, and publications. @en
description: ラットゲノム研究の総合サイトです。ラット遺伝子に関する情報の他に、ラットの系統に関する情報、病態モデルラットに関するデータ、文献情報等を提供しています。
language: en
publisher: Medical College of Wisconsin/Bioinformatics Research Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21478484
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17151068
distribution: Distribution
  description: data release
  rights: disclaimer.shtml
  access URL: ftp://ftp.rgd.mcw.edu/pub/
landing page: http://rgd.mcw.edu
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0014
theme: T0015
theme: T0026
theme: T0001
theme: T0005
theme: T0017
theme: T0003
theme: T0021
theme: T0019
status: Active @en
status: 稼動中

nbdc00189
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-01-06
source: Integbio Database Catalog
primary topic: RhizoBase

nbdc00189
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-03
source: Integbio Database Catalog
primary topic: RhizoBase

RhizoBase
type: Dataset
alternative: Genome database for Rhizobia with annotation @en
description: 財団法人かずさDNA研究所で全ゲノム配列決定したミヤコグサ根粒菌Mesorhizobium loti MAFF303099を含む、19種の根粒菌の全ゲノム配列情報を収録しています。種毎に、ゲノム配列、染色体マップ、遺伝子アノテーション、遺伝子機能カテゴリ、文献、公共データベースのリンク等が閲覧できます。
description: RhizoBase is a database of rhizobia sequence resources for users to obtain genomic information and perform searches. There are 22 currently available species, and in addition to gene and sequence searches, users can download raw sequence data as well functional annotation information. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24275496
landing page: http://genome.microbedb.jp/rhizobase
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1854
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/356
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/106589
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/204441
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/12960
theme: T0021
status: Active @en
status: 稼動中

nbdc00190
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-08
source: Integbio Database Catalog
primary topic: Rice PIPELINE

Rice PIPELINE
type: Dataset
description: 複数のイネ関連データベースを統合し、各データベースの情報を検索できるようにしたシステムです。 お手持ちの配列による各データベースの配列検索 (BLAST)やIDによる検索ができ、グラフィカルな検索結果からリンクによる各データベースの参照を可能としています。 現在はKOME (http://cdna01.dna.affrc.go.jp/cDNA/) に統合しています。
language: ja
language: en
publisher: 国立研究開発法人農業生物資源研究所
  type: Organization
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681439
landing page: http://cdna01.dna.affrc.go.jp/PIPE/index_ja.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
status: 運用終了

nbdc00191
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RPD (アーカイブ)

nbdc00191
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RPD (アーカイブ)

RPD (アーカイブ)
type: Dataset
title: RPD (Archive) @en
alternative: Rice Proteome Database @en
description: This database is a collection of two-dimensional electrophoretic gel spots obtained using various tissues of rice and subcellular organelles. A variety of protocols related to proteomic analysis are also provided on the site. The original site (http: //gene64.dna.affrc.go.jp/RPD/) has been closed. RPD is available from LSDB archive site. @en
description: イネの各種組織や細胞内小器官を対象に2次元ゲル電気泳動を行い、そのスポットを収集したデータベースです。プロテオーム解析に関する様々な手法のプロトコルも掲載されています。 国立研究開発法人 農業・食品産業技術総合研究機構によるオリジナルサイト（http: //gene64.dna.affrc.go.jp/RPD/）の運用は終了致しました。引き続き生命科学系データベースアーカイブからRPDをご利用いただけます。
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16217611
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681440
distribution: Distribution
  description: README.html
  description: README e.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/en/rpd/download.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/rpd/download.html
landing page: https://dbarchive.biosciencedbc.jp/jp/rpd/desc.html
landing page: https://dbarchive.biosciencedbc.jp/en/rpd/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0029
theme: T0007
theme: T0013
theme: T0018
theme: T0030
status: Active @en
status: 稼動中

nbdc00192
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RIKEN Arabidopsis Full-Length Clone Database Search

nbdc00192
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RIKEN Arabidopsis Full-Length Clone Database Search

RIKEN Arabidopsis Full-Length Clone Database Search
type: Dataset
description: 理研ゲノム科学総合研究センター(GSC)より寄託を受けたシロイヌナズナ完全長cDNAクローン(RAFL clone)のキーワード検索ができます。キーワードには、リソース番号、NCBI Accession Number、AGI code、cDNA clone nameの指定が可能です。
description: This database contains Arabidopsis thaliana cDNA sequences that users can query to obtain full clone sequences, particularly from AGI-coded data. The sequence coverage is selectable (full clone, 5' only, or 3' only) and each clone is linked to A. thaliana and NCBI Nucleotide records. @en
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608280
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9778851
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11910074
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16769687
landing page: http://www.brc.riken.jp/lab/epd/catalog/cdnaclone.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00193
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RMG (アーカイブ)

nbdc00193
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RMG (アーカイブ)

RMG (アーカイブ)
type: Dataset
title: RMG (Archive) @en
alternative: Rice Mitochondrial Genome
description: This site contains information on the mitochondrial genome of rice, including sequences and physical maps. The original site (http: //rmg.rice.dna.affrc.go.jp/) has been closed. The RMG is available from LSDB archive site. @en
description: イネのミトコンドリアゲノム情報が掲載されています。 ミトコンドリアゲノムの配列や物理地図等の情報を参照できます。 国立研究開発法人 農業・食品産業技術総合研究機構によるオリジナルサイト（http: //rmg.rice.dna.affrc.go.jp/）の運用は終了致しました。引き続き生命科学系データベースアーカイブからRMGをご利用いただけます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12471441
distribution: Distribution
  description: README e.html
  description: README.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/rmg/download.html
  access URL: https://dbarchive.biosciencedbc.jp/en/rmg/download.html
landing page: https://dbarchive.biosciencedbc.jp/en/rmg/desc.html
landing page: https://dbarchive.biosciencedbc.jp/jp/rmg/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0001
theme: T0006
theme: T0013
status: Active @en
status: 稼動中

nbdc00194
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: RMOS （アーカイブ）

nbdc00194
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: RMOS （アーカイブ）

RMOS （アーカイブ）
type: Dataset
title: RMOS (Archive) @en
alternative: Rice Microarray Opening Site @en
description: RMOS is a database of comprehensive information for Rice Microarray Project (April 1999 - March 2003). In addition to microarray data, users can also find information of the general background for Microarray techniques and the research data related to the custom microarray developed in the project. @en
description: イネのマイクロアレイプロジェクト(1999年開始)に関する総合的な情報が掲載されています。一般的なマイクロアレイの技術背景からプロジェクトで使用したアレイ解析のプロトコルや研究データ等の情報を参照できます。 なお、国立研究開発法人農業生物資源研究所によるオリジナルサイト (http ://cdna01.dna.affrc.go.jp/RMOS/) の運用は終了しました。引き続き生命科学系データベースアーカイブからRMOSをご利用いただけます。
language: ja
language: en
publisher: 国立研究開発法人農業生物資源研究所
  type: Organization
  label: National Institute of Agrobiological Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11214972
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11967095
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681439
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15029956
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14982972
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17448460
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12956525
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12728997
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12438691
landing page: http://dbarchive.biosciencedbc.jp/en/rmos/desc.html
landing page: http://dbarchive.biosciencedbc.jp/jp/rmos/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0024
theme: T0002
theme: T0018
theme: T0030
status: Active @en
status: 稼動中

nbdc00195
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RPG

nbdc00195
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-03
source: Integbio Database Catalog
primary topic: RPG

RPG
type: Dataset
alternative: Ribosomal Protein Gene Database
description: The original site was retired, and it is available in NBDC Life Science Database Archive. @en
description: 24種の真核生物、4種の古細菌、4種の真正細菌のリボソームタンパク質遺伝子を収集したデータベースです。ヒト、マウス、フグ、ショウジョウバエ、線虫については、ミトコンドリアリボソームタンパク質遺伝子も収録されています。各遺伝子について、核酸配列、アミノ酸配列、遺伝子構造、オルソログ、オルソロググループの遺伝子構造とマルチプルアラインメントが掲載されています。
language: en
publisher: 宮崎大学 フロンティア科学実験総合センター
  type: Organization
  label: University of Miyazaki Frontier Science Research Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681386
landing page: http://ribosome.med.miyazaki-u.ac.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0027
theme: T0013
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0001
status: Active @en
status: 稼動中

nbdc00196
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SASSC Quick search

nbdc00196
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: SASSC Quick search

SASSC Quick search
type: Dataset
alternative: The Sendai Arabidopsis Seed Stock Center @en
alternative: The Sendai Arabidopsis Seed Stock Center
description: 仙台シロイヌナズナ種子保存センター（SASSC）より寄託されたシロイヌナズナ野生株・近縁種等の種子に関わるデータベースです。各エントリーには葉の表現系や開花情報、写真が掲載されています。
description: SASSC is a search tool for finding Arabidopsis mutant seed lines. The site consists of a search box that can be used to locate genes of interest, retrieve information on mutant phenotypes, and request seeds. @en
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://sassc.epd.brc.riken.jp/sassc/create_search_panel2.php?mode=general
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0029
theme: T0017
status: Active @en
status: 稼動中

nbdc00198
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: SBM DB

nbdc00198
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SBM DB

SBM DB
type: Dataset
alternative: Systems Biology and Medicine Database @en
description: SBM DB is comprehensive database of gene expression profiles. This database is constructed with three databases; 1) RefExA is a comprehensive gene expression database of Human normal tissues, normal cultured cells and cancer cell lines with geneChip HG-U133A, can help investigation of human disease. 2) HUVEC DB is a database for HUVEC (Human Umbilical Vein Endothelial Cells) gene expression with stimuli by TNF&alpha etc.. 3) IHC DB is a database for nuclear receptor protein expression and localization in each normal organ (rat tissues) using antibody and immunohistochemical staining. These databases enable to compare the transcriptome of various tissues, organs and experiments. mRNA expression levels of genes are measured with oligo-nucleotide DNA microarray geneChip. @en
description: SBM DBは包括的な遺伝子発現データベースです。 ヒトの正常組織や、様々な、組織や細胞、疾患状態や薬剤による遺伝子発現プロファイルを oligo-nuculeotide DNAマイクロアレイ「GeneChip(R)」により解析したものです。 当データベースの遺伝子発現データは、LSBM（Laboratory for Systems Biology and Medicine）、 およびその共同研究者により提供されています。
language: ja
language: en
publisher: 東京大学 先端科学技術研究センター
  type: Organization
  label: The University of Tokyo Research Center for Advanced Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.lsbm.org/database/index.html
landing page: http://www.lsbm.org/site_e/database/index.html
theme: T0015
theme: T0024
theme: T0029
theme: T0001
theme: T0007
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00199
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SCMD

nbdc00199
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SCMD

SCMD
type: Dataset
alternative: Saccharomyces cerevisiae Morphological Database
description: 出芽酵母遺伝子破壊株の形態（出芽の状態）の顕微鏡写真を収集し、形態の様々な特徴をパラメータ化しているデータベースです。細胞の大きさ、細長さ、芽の位置など細胞形態情報を定量的データとして取得する画像処理ソフトウェアを開発し、形態の特徴抽出や類似性による分類を自動的に行います。
description: SCMD is a database of micrographs of budding yeast with thousands of images of mutant strains and results from automated data mining analysis of several parameters of these mutants. genes and phenotypes can be searched and extensive phenotype statistics are provided. @en
language: en
publisher: 東京大学 大学院新領域創成科学研究科
  type: Organization
  label: The University of Tokyo Graduate School of Frontier Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681423
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15980577
distribution: Distribution
  description: ParameterHelp.do
  rights: download.jsp
  access URL: http://yeast.gi.k.u-tokyo.ac.jp/datamine/download.jsp
landing page: http://yeast.gi.k.u-tokyo.ac.jp/datamine/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0029
theme: T0013
status: Active @en
status: 稼動中

nbdc00200
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-08-08
source: Integbio Database Catalog
primary topic: SCOP2

nbdc00200
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-08-08
source: Integbio Database Catalog
primary topic: SCOP2

SCOP2
type: Dataset
alternative: Structural Classification of Proteins 2
description: SCOP2 is a database for organizing structurally characterized proteins according to their structural and evolutionary relationships. In this database, proteins are organized according to their structural and evolutionary relationships, but instead of a simple tree-like hierarchy these relationships form a complex network of nodes. Then, the classification of proteins is described in terms of a directed acyclic graph in which each node defines a relationship of particular type and is exemplified by a region of protein structure and sequence. @en
description: PBDに登録されたタンパク質を構造と進化に着目して分類したデータベースです。分類されたタンパク質は類縁関係による単純な階層構造ではなく、タイプ（形状）、構造、進化、その他の4つのカテゴリーに定義された類縁関係ネットワークのノードとして扱われます。各データでは類縁関係ネットワークと代表的なタンパク質構造の領域や配列が表示されます。キーワード検索やグラフィカルなインターフェースによる類縁ネットワークからの検索が可能です．
language: en
publisher: The Medical Research Council (MRC) Laboratory of Molecular Biology
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681400
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18000004
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752311
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7723011
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24293656
distribution: Distribution
  description: download.html
  access URL: http://scop2.mrc-lmb.cam.ac.uk/download.html
landing page: http://scop2.mrc-lmb.cam.ac.uk
theme: T0028
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00201
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: スギゲノムデータベース

nbdc00201
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-10-16
source: Integbio Database Catalog
primary topic: スギゲノムデータベース

スギゲノムデータベース
type: Dataset
title: SGD @en
alternative: Sugi Genome Database @en
description: Sugi Genome Database is a database for genome of sugi (Cryptomeria japonica) and a Japanese conifer (Chamaecyparis obtusa). It provides information about EST, DNA markers, a linkage map, and genetic diversity in these species. @en
description: 本データベースは、スギ（Cryptomeria japonica ）とヒノキ（Chamaecyparis obtusa ）の遺伝子の部分塩基配列（EST）、DNAマーカー、遺伝連鎖地図、遺伝的多様性などに関する情報を提供しています。
language: ja
language: en
publisher: 国立研究開発法人森林研究・整備機構 森林総合研究所
  type: Organization
  label: Forestry and Forest Products Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.ffpri.affrc.go.jp/labs/cjgenome/index.html
landing page: http://www.ffpri.affrc.go.jp/labs/cjgenome/indexj.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13415
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3369
theme: T0001
theme: T0003
status: Active @en
status: 稼動中

nbdc00202
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SGD

nbdc00202
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SGD

SGD
type: Dataset
alternative: Saccharomyces Genome Database
description: スタンフォード大学による出芽酵母の分子生物学データベースです。出芽酵母のゲノムや生物学に関する様々な情報が収録されており、キュレーターによって情報の更新や維持がなされています。SGDでは、Gene Name Registryと呼ばれる出芽酵母の全遺伝子名の管理も行っています。
description: This is an integrated database for budding yeast Saccharomyces cerevisiae. It contains search and analysis tools based on genes, sequences, and functions, as well as information related to citations, and the community. The information is updated and maintained by curators. It enables users to find functional relationships to sequences and gene products of fungi and higher organisms can also be verified. The SGD also maintains all gene names for budding yeast through the gene Name Registry. @en
language: en
publisher: Stanford University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399804
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22110037
distribution: Distribution
  description: download-data
  rights: terms.html
  access URL: http://www.yeastgenome.org/download-data
landing page: http://www.yeastgenome.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0014
theme: T0024
theme: T0026
theme: T0001
theme: T0007
theme: T0006
theme: T0017
theme: T0030
theme: T0021
theme: T0029
theme: T0019
status: Active @en
status: 稼動中

nbdc00203
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-11-29
source: Integbio Database Catalog
primary topic: SilkBase

nbdc00203
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-11-29
source: Integbio Database Catalog
primary topic: SilkBase

SilkBase
type: Dataset
alternative: EST analysis of silkworm gene expression
description: 家蚕であるカイコ及び野蚕の一種であるエリサンはわが国独自のモデル生物であり、鱗翅目（絹糸昆虫および農業害虫の多くがここへ入る）の代表として世界の昆虫研究をリードする研究対象となっています。「SilkBase」は、これらカイコとエリサン(将来的に野蚕のクワコを追加)のゲノム情報を使って構築したデータベースで、ショウジョウバエや蚊類のゲノムデータベースなどでは得られない鱗翅目昆虫に特異的な遺伝子情報が大量に登録されています。
description: SilkBase is a database of expressed genes from Bombyx mori and the related species Samia cynthia ricini and Mandarina fosimid. The database contains thousands of EST reads from randomly selected cDNAs from each species. Users can perform keyword or BLAST searches for each against cDNAs. Links for requesting resources are also provided. @en
language: en
publisher: 東京大学
  type: Organization
  label: The University of Tokyo @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14614147
landing page: http://silkbase.ab.a.u-tokyo.ac.jp/cgi-bin/index.cgi
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7092
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/63990
theme: T0021
status: Active @en
status: 稼動中

nbdc00204
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Silkworm Base

nbdc00204
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Silkworm Base

Silkworm Base
type: Dataset
alternative: Silkworm Genetic Resource Database
description: カイコリソースの総合データベースです。系統、変異体遺伝子情報のほか、文献情報等が掲載されており、目的に応じて各種バイオリソースの提供を受けることができます。
description: Silkworm Base is a database of silkworm resources including eggs, larvae, pupas, cocoons and cloned DNA established by Kyushu University and National Institute of genetics. Silkworm Base consists of information on genetic resource stocks, mutant strains, references, distribution requests and related sites. Each entry contains a strain name, phenotype data, genetic background (gene symbol, allele, etc), origin, references, images and feeding ability. Users can search available resources by keywords from those items. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/silkwormbase/index.jsp
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0029
theme: T0001
theme: T0017
theme: T0030
theme: T0014
status: Active @en
status: 稼動中

nbdc00205
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Silver Project: Ape Genome Sequencing

nbdc00205
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Silver Project: Ape Genome Sequencing

Silver Project: Ape Genome Sequencing
type: Dataset
description: Silver Project: Ape Genome Sequencing is a repository of ape nucleotide sequences maintained by Division of Population genetics, National Institute of genetics (NIG). This database contains comparative data of human and ape sequences including those determined under Silver Project, chimpanzee and gorilla sequences retrieved from DDBJ/EMBL/GenBank International Nucleotide Sequence Database. Users can browse phylogenetic trees based on coding regions, noncoding regions or mitochondrial DNA, as well as alignments of human and ape sequences. @en
description: チンパンジーおよびゴリラの塩基配列、ヒトと類人猿の塩基配列の比較結果、類人猿ゲノム計画(Silver)で決定した塩基配列を基にした比較結果を掲載している。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://sayer.lab.nig.ac.jp/~silver/index-j.html
landing page: http://sayer.lab.nig.ac.jp/~silver/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: T0001
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9593
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9581
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9600
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9597
status: 休止
status: Inactive @en

nbdc00206
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: dbSNP

nbdc00206
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: dbSNP

dbSNP
type: Dataset
alternative: The Single Nucleotide Polymorphism Database (dbSNP) @en
description: 1～数塩基の置換、挿入/欠失、反復等の多型情報からなるデータベースです。各SNPについて、集団間での多型頻度の違いを視覚的に比較することもできます。
description: dbSNP collects information on polymorphisms based on single and small-scale multi-base substitutions, including insertions and deletions, microsatelites, and non-polymorphic variants. Differences in the frequency of polymorphisms in a population can be visually compared for each SNP. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125122
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592272
distribution: Distribution
  description: 00readme.txt
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/snp/
landing page: http://www.ncbi.nlm.nih.gov/snp/
theme: T0021
theme: T0003
status: Active @en
status: 稼動中

nbdc00207
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SPAD

nbdc00207
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SPAD

SPAD
type: Dataset
alternative: Signaling Pathway Database
description: SPAD is a database of protein signaling cascades with pathway diagrams for a limited number of extracellular signaling pathways in three broad areas: growth factors, cytokines, and hormones. Each component of a pathway is hyperlinked to a page containing further details. @en
description: 遺伝子発現や細胞増殖を制御する膨大なシグナル伝達パスウェイ情報を整理し、可視化したデータベースです。SPADでは、細胞内シグナルパスウエイの引き金となる細胞外シグナル分子に基づき、成長因子、サイトカイン、ホルモン、ストレスの4つのカテゴリーにパスウエイを分類しています。DNAやタンパク質の配列情報の他、タンパク質-タンパク質相互作用、タンパク質-DNA相互作用の情報も蓄積しています。
language: en
publisher: 九州大学 大学院生物資源環境科学府
  type: Organization
  label: Kyushu University Graduate School of Bioresource and Bioenvironmental Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://www.grt.kyushu-u.ac.jp/spad/
theme: T0021
theme: T0026
theme: T0001
theme: T0007
status: 休止
status: Inactive @en

nbdc00208
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Species 2000

nbdc00208
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Species 2000

Species 2000
type: Dataset
description: Species 2000 is a collection of all the species in the world (microbes, fungi, plants and animals). The data is obtained, and made available by combining a comprehensive number of species databases from all over the world. This enables the database developers to cover all the major organism groups. This checklist contains information on more than 1,3M species from 115 databases. It incorporates the Catalogue of Life, which contains a taxonomic tree of organisms and a nine-tiered taxonomic classification system that can be browsed and searched. @en
description: Species 2000は、生物多様性研究の基本となるデータセットとして、現在知られている地球上の生物（動物、植物、菌類、微生物）の種を全て列挙し、地球生物種カタログの作成を目指しているプロジェクトです。生物種データベース「Catalogue of Life」を公開しています。現在、80種類のデータベースに由来する1,293,517生物種の情報が収録されています。
language: en
publisher: University of Reading
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
distribution: Distribution
  rights: terms-use
  access URL: http://www.catalogueoflife.org/content/annual-checklist-archive
landing page: http://www.sp2000.org
theme: T0014
theme: T0019
status: Active @en
status: 稼動中

nbdc00209
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: The NAISTrap Project

nbdc00209
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The NAISTrap Project

The NAISTrap Project
type: Dataset
description: マウスES細胞に対して新規の遺伝子トラップ法(UPATrap)を用い、ランダムな遺伝子破壊変異株を作成しました。トラップされた遺伝子の配列と、さらにはその配列に基づいて作成したDNAマイクロアレイを用いてマウス体内における遺伝子発現パターンを解析しています。
description: NAISTrap is a database of gene-trapped ES cell lines generated by a gene trapping method termed UPATrap. Each entry consists of following 7 items; the clone number, name of the trapped gene, expression pattern in ES cells, identity, coding sequence in mRNA, deleted region and trapped sequence. NAISTrap provides a tutorial for the UPATrap and other gene trapping methods. Users can order available resources by e-mail. @en
language: ja
language: en
publisher: 奈良先端科学技術大学院大学 バイオサイエンス研究科
  type: Organization
  label: Nara Institute of Science and Technology Graduate School of Biological Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://bsw3.aist-nara.ac.jp/kawaichi/naistrap.html
landing page: http://bsw3.aist-nara.ac.jp/kawaichi/naistrap-e.html
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: T0017
status: Active @en
status: 稼動中

nbdc00210
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NBRP-Rat

nbdc00210
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NBRP-Rat

NBRP-Rat
type: Dataset
alternative: The National BioResource Project for the Rat in Japan
description: ラットの系統、特性、研究対象分野の検索、分与申し込みのサービスを提供しているサイトです。ラット資源の保存情報、世代数、特性や繁殖方法、参考文献などの情報が提供されています。
description: NBRP-Rat is a database for collection, preservation and supply of rat strains with phenotypic and genotypic profiles. NBRP-Rat contains standardized strains as well as many mutant lines (spontaneous mutants, congenic and recombinant strains, transgenic and mutagenized rats, etc) from Japan and abroad. This database provides a query form to order or deposit strains and research tools such as the phenome database, phylogenetic trees and a genetic chart. Users can search available strains by keywords, preservation status, genetic categories and research categories. @en
language: ja
language: en
publisher: 京都大学 大学院医学研究科 附属動物実験施設
  type: Organization
  label: Institute of Laboratory Animals, Graduate School of Medicine, Kyoto University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15129252
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16584579
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15591307
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19654430
landing page: http://www.anim.med.kyoto-u.ac.jp/NBR/strains/Strains_list.aspx
landing page: http://www.anim.med.kyoto-u.ac.jp/nbr/Default.aspx
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0014
theme: T0024
theme: T0017
theme: T0003
status: Active @en
status: 稼動中

nbdc00211
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TMIG-2DPAGE Database

nbdc00211
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: TMIG-2DPAGE Database

TMIG-2DPAGE Database
type: Dataset
description: TMIG-2DPAGE Database is a database of aging-related proteome of human cells. This database contains information for investigating molecular mechanisms involved in cellular aging, aging-related diseases, and oxidative stress-induced cell damages. Each entry is linked to the standard spot protein map of the two-dimensional gel image of SDS-PAGE in order to be accessible by clicking the mouse on it. 2D gel images of TIG-3 (for profiling in-vitro aging of nornal human diploid fibroblasts), SH-SY5Y (human neuroblastoma-derived dopaminergic cell line), HUVEC (human umbilical vein endothelial cells) and Werner's syndrome skin fibroblasts (under construction) are included. @en
description: 老化の指標となるタンパク質についての二次元電気泳動実験結果を掲載したデータベースです。
language: ja
language: en
publisher: 地方国立研究開発法人東京都健康長寿医療センター
  type: Organization
  label: Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9548301
landing page: http://www.proteome.jp/2D/J_index.html
landing page: http://www.proteome.jp/2D/
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00212
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Tobacco EST clones from BY-2 cells Database Search

nbdc00212
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Tobacco EST clones from BY-2 cells Database Search

Tobacco EST clones from BY-2 cells Database Search
type: Dataset
description: 理研植物科学研究センター(PSC)より寄託を受けたタバコBY-2培養細胞ESTクローンのキーワード検索ができます。キーワードには、リソース番号（BRC）、BY-2 EST clone name、DDBJ accession numberを指定することが可能です。
description: This database of tobacco cDNA clones contains 5' and 3' sequence information for each clone, generated from BY-2 cells. Users can search by gene or clone information, or locate clones by BLAST search. @en
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15509851
landing page: http://www.brc.riken.jp/lab/epd/catalog/n_tabacum.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4097
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00213
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-10-27
source: Integbio Database Catalog
primary topic: TP-Search

nbdc00213
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-10-27
source: Integbio Database Catalog
primary topic: TP-Search

TP-Search
type: Dataset
description: TP-Search is an integrated database on drug transporters, which are thought to play an important role in the pharmacokinetics of drugs. This database contains information extracted from a large number of published papers. It includes information related to drug transporters, tissue, compounds name, drug-drug interaction, gender difference, KO mice and rats, pathophysiology and genetic diseases. Users are able to search by tissue name, genetic polymorphisms or genetic diseases. It's necessary to registrate with your e-mail address. @en
description: 薬物体内動態を規定する重要な役割を果たしていることが想定される薬物トランスポーターに関する情報を収集したデータベースです。情報は文献から抽出されたものです。 このデータベースは以下の4つのサイトで構成されています。 1) Transporter information : http://togodb.dbcls.jp/tpsearch トランスポーターの基質・阻害剤情報 2) Drug-drug interraction : http://togodb.dbcls.jp/tpsearch_ddi 薬剤間相互作用 3) Tpsearch pgx : http://togodb.dbcls.jp/tpsearch_pgx ゲノム薬理 4) Pathophysiology : http://togodb.dbcls.jp/pathophysiology 病態生理
language: en
publisher: 東京大学 大学院薬学系研究科
  type: Organization
  label: The University of Tokyo Graduate School of Pharmaceutical Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15587938
landing page: http://togodb.dbcls.jp/tpsearch
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10114
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9527
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10088
status: Active @en
status: 稼動中

nbdc00214
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Transcriptome analysis of 2 component system in Eschericia coli

nbdc00214
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Transcriptome analysis of 2 component system in Eschericia coli

Transcriptome analysis of 2 component system in Eschericia coli
type: Dataset
description: 大腸菌2成分制御系の欠失変異株における遺伝子発現プロファイルのマイクロアレイ解析データを公開しています。2成分制御系により影響を受ける遺伝子情報や細胞機能の解析が可能です。 ※2012年9月時点で画面によってはリンクエラーが生じます。
description: This database contains three working data tables displaying the effect of genes from a particular category on organismal characteristics, based on transcriptome analysis of the two-component system in E.coli. HTML and PDF formats are available. @en
language: en
publisher: 奈良先端科学技術大学院大学
  type: Organization
  label: Nara Institute of Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12366850
landing page: http://ecoli.aist-nara.ac.jp/xp_analysis/2_components/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0024
theme: T0001
theme: T0002
status: 休止
status: Inactive @en

nbdc00215
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TranspoGene

nbdc00215
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TranspoGene

TranspoGene
type: Dataset
alternative: The influence of Transposed Elements (TEs) on the transcriptome of 7 species
description: 7生物種のタンパク質コード領域に存在する可動性遺伝因子Transposed Elements (TEs) のデータベースです。TEsの種類やファミリー、ホスト遺伝子に関する情報が収録されています。
description: Transpogene is a database that focusses on how the transcriptome of 7 species are influenced by transposed elements (TEs). It consists of a collection of TEs, which are located in the protein-coding genes of these organisms. The genomes represented are human, mouse, chicken, Zebrafish, fruit fly, nematode and sea squirt, evidently stretching widely across the animal kingdom. Examples of effects these TEs may have on their hosting genes include the creation of new exons, insertion of TEs into introns, exons, and promoters and involvement in the cause and development of diseases. A search option is available where a keyword e.g. the Swissprot entry name or a number of other identifying codes can be entered and various criteria can be selected to narrow down the search results. The Transpogene database is also downloadable in its entirety. @en
language: en
publisher: Tel Aviv University
  type: Organization
  address country: Israel @en
  address country: イスラエル
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17986453
landing page: http://transpogene.tau.ac.il/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7719
status: Active @en
status: 稼動中

nbdc00216
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Transposon tag line Database Search

nbdc00216
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Transposon tag line Database Search

Transposon tag line Database Search
type: Dataset
description: This database of Arabidopsis transposon mutants can be searched by line ID or gene model ID to locate available mutants, which can be ordered for further study. @en
description: 理研ゲノム科学総合研究センター植物ゲノム機能情報研究グループ植物変異開発研究チームより寄託を受けたトランスポゾンタグライン（第１および第５染色体上に存在するDs因子の転移により挿入変異が生じたライン）の検索ページです。本カタログにはTail PCRにより得られた配列情報についてblast searchを行い、上位２番目までの挿入位置の候補について、近傍にあるMIPSのAGI code numberにより表示を行っています。多くの場合は１番目に記載された位置が正しいと予想されます。検索はGSCのカタログに掲載されているライン番号、ないしはAGI code numberで行ってください。
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8220445
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12177482
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15840642
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14996221
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8893547
landing page: http://www.brc.riken.jp/lab/epd/catalog/transposon.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
theme: T0017
theme: T0021
status: Active @en
status: 稼動中

nbdc00217
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: TraP

nbdc00217
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: TraP

TraP
type: Dataset
alternative: Transcription Product Database
description: This database compares a number of metabolic pathways in a group of seven single-celled microorganisms (also called archaea) namely the citric acid cycle, the energy producing glycolytic pathway and the processes by which amino acids and nucleic acids are synthesized. Links to two related databases, namely Archaic (ARCHAebacterial Information Collection) and Arch genet (Archaeal gene Network) are available. These were tested and found functional. @en
description: 古細菌7種の間で、代謝経路（解糖系、TCA回路、電子伝達系、アミノ酸生合成、核酸生合成）を比較したデータベースです。種による差分のハイライト表示が可能です。
language: en
publisher: 独立行政法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9598984
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11121031
landing page: http://riodb.ibase.aist.go.jp/trap/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2190
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2234
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/56636
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/70601
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/29292
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/145262
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/50339
status: 運用終了
status: Closed @en

nbdc00218
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TRSIG

nbdc00218
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TRSIG

TRSIG
type: Dataset
alternative: Database on Translational Signals
description: 遺伝子発現は転写だけでなく、翻訳のレベルでも制御されています。そこで、mRNAの翻訳レベルでのシグナル配列と機能活性データを集めたデータベースを構築しました。現在、18種類のウィルス、10種類の植物、10種類の動物のシグナルを収録しています。
description: TRSIG is a database of mRNA sequence elements that influence translation events. The database contains signals such as regulatory elements and caps. The database can be searched by BLAST, or annotated signals can be browsed. @en
language: en
publisher: 九州工業大学
  type: Organization
  label: Kyushu Institute of Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://gibk26.bio.kyutech.ac.jp/jouhou/trsig/blast.html
theme: T0021
theme: T0007
theme: T0006
theme: T0030
status: 休止
status: Inactive @en

nbdc00219
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: UCSC Genome Bioinformatics

nbdc00219
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: UCSC Genome Bioinformatics

UCSC Genome Bioinformatics
type: Dataset
description: ゲノム解読がなされている真核生物を対象として自動アノテーションを行い、その結果をゲノムブラウザ/データベースとして公開しているプロジェクトです。ゲノム上にマッピングされた様々な分子情報や実験データを閲覧する機能や、ホモロジー検索、データダウンロードなどの便利な機能を提供しています。ユーザ側が用意したデータをゲノムブラウザ上に表示させることも可能です。
description: UCSC Genome Bioinformatics is a database which contains the reference sequence and working draft assemblies for a large collection of genomes. It is also a portal site to the ENCODE and Neandertal projects. This database provides following tools; 1) The Genome Browser zooms and scrolls over chromosomes, showing the work of annotators worldwide. 2) The gene Sorter shows expression, homology and other information on groups of genes that can be related in many ways. 3) Blat quickly maps your sequence to the genome. 4) The Table Browser provides convenient access to the underlying database. 5) Visigene lets you browse through a large collection of in situ mouse and frog images to examine expression patterns. 6) Genome Graphs allows you to upload and display genome-wide data sets. @en
language: en
publisher: University of California, Santa Cruz
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17993665
distribution: Distribution
  rights: license
  access URL: http://hgdownload.soe.ucsc.edu/downloads.html
landing page: http://genome.ucsc.edu/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6231
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6498
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33511
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7742
theme: T0029
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6960
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/40674
theme: T0003
theme: T0024
status: Active @en
status: 稼動中

nbdc00220
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: UniGene

nbdc00220
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: UniGene

UniGene
type: Dataset
description: 転写産物の非冗長配列セット（クラスター）を自動的に生成し、収録しています。各クラスターは別々の遺伝子、あるいは発現偽遺伝子を表し、クラスタごとに相同タンパク、遺伝子発現、ゲノム位置、mRNA配列、EST配列、cDNAクローンの情報を提供しています。
description: This database contains sets of transcriptional sequences obtained from the same locus. It includes information such as the homology between transcripts and the reference protein, expression pattern, cDNA clones, and genomic position. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8849440
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7670480
distribution: Distribution
  description: README
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/repository/UniGene/
landing page: http://www.ncbi.nlm.nih.gov/unigene
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1
theme: T0024
theme: T0007
theme: T0002
status: Active @en
status: 稼動中

nbdc00221
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-12-13
source: Integbio Database Catalog
primary topic: UniProt

nbdc00221
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-13
source: Integbio Database Catalog
primary topic: UniProt

UniProt
type: Dataset
alternative: The Universal Protein Resource @en
description: アミノ酸配列とその機能情報を掲載している代表的なデータベースです。「UniProtKB」、「UniRef」、「UniParc」の3種類のデータベースから構成されています。 UniProtKB: 文献情報などを元に手作業で高品質のアノテーションを付けたSwissProtと、機械的にアノテーションを加えたTrEMBLを公開しています。 UniRef: あらかじめ行われた配列相同性検索の結果を提供しています。 UniParc: 配列IDごとに他のデータベースのID等の情報をまとめています。
description: This database contains information on amino acid sequences and their functions. It is composed of four core databases, UniProtKB, UniRef, UniParc, and Proteomes. UniProtKB contains two types of data, which are manually curated high quality SwissProt annotations based on literature information, and automatically annotated TrEMBL. UniRef provides results of sequence similarity searches. UniParc integrates information such as ID for other databases per sequence ID. Proteomes provides proteome data of each organism with completely sequenced genomes. @en
language: en
publisher: UniProt Consortium
  type: Organization
  address country: スイス
  address country: Switzerland @en
  address country: United Kingdom @en
  address country: United States @en
  address country: アメリカ合衆国
  address country: イギリス
distribution: Distribution
  rights: license
  access URL: http://www.uniprot.org/downloads
landing page: http://www.uniprot.org/
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00222
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-09-19
source: Integbio Database Catalog
primary topic: Probe

nbdc00222
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-09-16
source: Integbio Database Catalog
primary topic: Probe

Probe
type: Dataset
description: 遺伝子型決定や遺伝子発現解析、SNP解析、ゲノムマッピング、遺伝子サイレンシングなどの研究に用いられる核酸プローブ情報を登録するデータベースです。各プローブにつき、配列、文献、実験方法が掲載されています。実験の目的や種類、プローブのタイプで検索することができます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.ncbi.nlm.nih.gov/probe
theme: T0021
theme: T0024
theme: T0018
theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00223
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: UTGB Medaka Genome Browser

nbdc00223
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-07
source: Integbio Database Catalog
primary topic: UTGB Medaka Genome Browser

UTGB Medaka Genome Browser
type: Dataset
alternative: University of Tokyo Genome Browser @en
description: UTGB (University of Tokyo Genome Browser) を利用したメダカに関するゲノムブラウザです。予測遺伝子、EST、GC含有量、繰り返しと比較ゲノミクスなど基本的な情報をブラウズできます。また、遺伝子マーカー、PCRプライマー、BAC (遺伝子導入ベクター)、フォスミドベクター、SNPおよび挿入/欠損、SAGEタグの情報も提供しています。 UTGBゲノムブラウザはToolkitとしてダウンロードが可能です。
description: This is a browser for the Medaka (Oryzias latipes) genome. The site allows users to perform BLAST searches or query by ID. Data is also available for download. @en
language: en
publisher: 東京大学 大学院新領域創成科学研究科
  type: Organization
  label: The University of Tokyo Graduate School of Frontier Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17932069
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17554307
landing page: http://utgenome.org/medaka/
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00224
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: V. parahaemolyticus Genome Information

nbdc00224
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: V. parahaemolyticus Genome Information

V. parahaemolyticus Genome Information
type: Dataset
description: VPARA is a database of Vibrio parahaemolyticus genome sequence data. The database features BLAST and keyword searching and provides data for download in several formats. @en
description: 腸炎ビブリオ菌の全ゲノム配列およびアノテーションを掲載したデータベースです。ゲノムビューワやrRNAおよびtRNAの表、ORF検索、遺伝子検索、ブラスト検索などが利用できます。データ全体の一括ダウンロードも可能です。
language: en
publisher: 東京工業大学 大学院生命理工学研究科
  type: Organization
  label: Tokyo Institute of Technology Graduate School of Bioscience and Biotechnology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12169621
references: http://rdf.ncbi.nlm.nih.gov/pubmed/6756788
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12142404
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12620739
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10834969
distribution: Distribution
  access URL: http://genome.bio.titech.ac.jp/bacteria/vpara/ftp.html
landing page: http://genome.bio.titech.ac.jp/bacteria/vpara/
theme: T0021
theme: T0001
theme: T0007
theme: T0005
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/670
status: 休止
status: Inactive @en

nbdc00225
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: XDB

nbdc00225
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: XDB

XDB
type: Dataset
alternative: Xenopus laevis Database
description: アフリカツメガエル(Xenopus laevis)のEST、そのアセンブリ、WISH画像が登録されています。アセンブリは、NCBI-NR, UniGene(X.laevis), TIGR-XGI, Xenopus protein databse (NIH) を対象にしたBLAST検索、およびInterProScanによってアノテーションされています。WISH画像は、発生ステージごとに各向きから撮影されています。
description: XDB is a database of Xenopus laevis EST sequences. The database contains over 250,000 ESTs that can be searched by BLAST, keyword, or domain. A spatial expression browser is also available. @en
language: en
publisher: 自然科学研究機構 基礎生物学研究所
  type: Organization
  label: National Institute for Basic Biology @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://xenopus.nibb.ac.jp/download.html
landing page: http://xenopus.nibb.ac.jp/
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8355
theme: T0029
theme: T0013
theme: T0002
status: Active @en
status: 稼動中

nbdc00226
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-12-10
source: Integbio Database Catalog
primary topic: XenoBiores

XenoBiores
type: Dataset
alternative: ナショナルバイオリソースプロジェクト 「ネッタイツメガエルの近交化・標準系統の樹立・提供」のWEBサイト
description: NBRPネッタイツメガエルのプロジェクトは平成24年3月に終了し、同6月に新規事業として再スタートしました。過去に収集されたネッタイツメガエルの近交化、標準系統の樹立、および、その保存と提供を行います。現在は、安田系統、Ivory Coast 系統を提供し、旧NBRP として東京大学で維持してきたNigerian、Golden、および浅島の各系統は、産業技術総合研究所 幹細胞工学研究センター 器官発生研究チームから提供されています。
language: ja
publisher: 広島大学 大学院理学研究科附属両生類研究施設
  type: Organization
  address country: 日本
landing page: http://home.hiroshima-u.ac.jp/amphibia/xenobiores/iweb/XenoBiores_Top.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8364
theme: T0017
status: 稼動中

nbdc00227
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Yeast

nbdc00227
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: Yeast

Yeast
type: Dataset
alternative: National BioResource Project - Yeast @en
alternative: ナショナルバイオリソースプロジェクト - 酵母
description: 分裂、出芽酵母株の菌株、プラスミド、ライブラリ、完全長cDNAなどのリソースの検索が可能です。また、それらの分与申し込みも可能です。
description: National BioResource Project - Yeast is a database of the budding yeast (Saccharomyces cerevisiae) and the fission yeast (Schizosaccharomyces pombe) resources. This database contains strains, plasmids, genomic DNA and cDNA clones of yeast strains. Users can search available resources by keywords such as loci, genes and depositor's name. @en
language: ja
language: en
publisher: 大阪市立大学 大学院理学研究科
  type: Organization
  label: Osaka City University Graduate School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://yeast.lab.nig.ac.jp/nig/index.html
landing page: http://yeast.lab.nig.ac.jp/nig/index_en.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4930
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0001
theme: T0005
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00228
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: カイコ完全長cDNAデータベース

nbdc00228
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-18
source: Integbio Database Catalog
primary topic: カイコ完全長cDNAデータベース

カイコ完全長cDNAデータベース
type: Dataset
title: Bombyx mori EST Sequences in Full-length cDNA Libraries @en
description: Bombyx mori EST Sequences in Full-length cDNA Libraries is a database of silkworm (Bombyx mori) EST sequences maintained by Graduate School of Agricultural and Life Sciences, The University of Tokyo. Each enrtry contains a clone name and full-length sequence. Users can perform BLAST search against EST sequences, and retrieve the sequences from this database and SilkBase; another database of silkworm ESTs. @en
description: カイコの完全長cDNAデータベースです。カイコ完全長cDNA末端塩基配列データベース、カイコEST塩基配列データベース(SilkBase： http://integbio.jp/dbcatalog/record/nbdc00203 ) を対象にしてBLASTによる相同性検索が可能です。
language: ja
language: en
publisher: 東京大学 大学院農学生命科学研究科
  type: Organization
  label: The University of Tokyo Graduate School of Agricultural and Life Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://papilio.ab.a.u-tokyo.ac.jp/Bombyx_EST/
landing page: http://papilio.ab.a.u-tokyo.ac.jp/kanzencdna/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0002
theme: T0021
status: 休止
status: Inactive @en

nbdc00229
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-16
source: Integbio Database Catalog
primary topic: Mutant Panel

nbdc00229
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-16
source: Integbio Database Catalog
primary topic: Mutant Panel

Mutant Panel
type: Dataset
alternative: Rice Tos17 Insertion Mutant Database @en
alternative: Tos17ミュータントパネルのページ
description: 農業生物資源研究所遺伝子機能研究チームは、イネの遺伝子破壊系統を内在性トランスポゾン(Tos17)を転移させて作成しています。このデータベースではトランスポゾンに隣接する塩基配列を検索したり、3次元DNAプールを用いたPCRスクリーニングの結果から系統名を検索できるようにしています。利用にはユーザ登録が必要です。
description: The Functional Genomics Research Team at the National Institute of Agricultural Sciences is creating a gene disruption system in rice using the endogenous transposon, Tos17. This database allows users to search sequences adjacent to the transposon, as well as strain names from the results of PCR screening using a three-dimensional DNA pool. User registration is required for access. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17180734
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12897251
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8755553
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11228433
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16100779
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9291976
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15284490
landing page: https://tos.nias.affrc.go.jp/index.html.en
landing page: https://tos.nias.affrc.go.jp/index.html.ja
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/39947
theme: T0005
theme: T0021
status: Active @en
status: 稼動中

nbdc00230
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: 原生生物情報サーバ

原生生物情報サーバ
type: Dataset
description: 原生生物とその他の微生物の画像（静止画 81037枚、内訳：総計765属、3203種、15434サンプル、および、動画 2261クリップ、淡水産が主）と関連情報を提供しています。
language: ja
publisher: 法政大学
  type: Organization
  address country: 日本
landing page: http://protist.i.hosei.ac.jp/index-J.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4761
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2763
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33634
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/38557
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/38254
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3041
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5878
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/94701
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/255975
theme: T0029
status: 稼動中

nbdc00231
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 植物遺伝子材料カタログ

植物遺伝子材料カタログ
type: Dataset
description: 平成8年度より植物細胞開発銀行より提供をおこなっていた遺伝子材料について引き続き実験植物開発室より提供を行なっています。
language: ja
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  address country: 日本
landing page: http://www.brc.riken.jp/lab/epd/plant/g101_search.php
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0002
theme: T0017
status: 稼動中

nbdc00232
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 植物培養細胞カタログ

植物培養細胞カタログ
type: Dataset
description: 平成8年度より植物細胞開発銀行が提供をおこなっていた植物培養細胞のカタログです。植物細胞開発銀行の業務は2001年4月より理化学研究所バイオリソースセンターに移管しており、現在では実験植物開発室が行なっています。
language: ja
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  address country: 日本
landing page: http://www.brc.riken.jp/lab/epd/plant/c101_search.php
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0013
theme: T0017
status: 稼動中

nbdc00233
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 統合失調症の脳内遺伝子発現プロファイル

統合失調症の脳内遺伝子発現プロファイル
type: Dataset
description: 高感度の放射活性を利用したDNAアレイを利用して、統合失調症の脳3領域における病態遺伝子プロファイルを取得し、約2-3000個の主要な既知遺伝子mRNAの発現変化率とその個人差を解析した結果を公開しています。
language: ja
publisher: 新潟大学 脳研究所 基礎神経科学部門 分子神経生物学分野
  type: Organization
  address country: 日本
landing page: http://www.bri.niigata-u.ac.jp/~molecular/db_A.html
theme: T0015
theme: T0024
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止

nbdc00234
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: AgriTOGO

AgriTOGO
type: Dataset
alternative: 農林水産生物ゲノム情報統合データベース
description: 農林水産生物ゲノム情報統合データベースは、農林水産省の研究の成果として公開している情報を統合し、より価値の高い情報を発信することを目的としています。統合検索システム、統合データベース、データベースや解説ツールの紹介、ダウンロードデータなどを提供しています。
language: ja
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  address country: 日本
distribution: Distribution
  description: download.html
  access URL: http://togo.dna.affrc.go.jp/download.html
landing page: http://togo.dna.affrc.go.jp/
theme: T0031
theme: T0001
status: 運用終了

nbdc00235
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-10-13
source: Integbio Database Catalog
primary topic: 3DPSD

3DPSD
type: Dataset
alternative: ３次元医薬品構造データベース
description: ３次元医薬品構造データベース(3DPSD)は医療用医薬品の３次元構造を格納したデータベースで、全ての構造データを公開しています。3DPSDは医薬品の一般名（英名）をアルファベット順に収納し、名称により検索できる階層型データベースと、平面構造式を用いて医薬品を検索できる構造検索システムから成ります。階層型データベースが収納する３次元構造データは、分子モデリングの手法によって計算された分子の最安定構造や分子の運動性を表すアニメーション、電子密度面に貼り付けた静電ポテンシャルマップなどを提供しています。
language: ja
language: en
publisher: 東京薬科大学 薬学部
  type: Organization
  address country: 日本
landing page: http://5univsrv.toyaku.ac.jp/wp/3dpsd/?page_id=186
theme: T0012
theme: T0022
status: 稼動中

nbdc00236
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GETDB

nbdc00236
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GETDB

GETDB
type: Dataset
alternative: Gal4 Enhancer Trap Insertion Database
description: GETDB is a collection of information of Gal4 enhancer trap lines in D. melanogaster. The database contains insertion site, expression pattern, and mutant phenotype information on nearly 7000 gene trap fly lines. Users can search or browse by gene, location, chromosome position, and strain ID. Insertions were mapped using 5' end mapping of the Gal4 promoter. Stocks of the insertion mutants are also available. @en
description: ショウジョウバエにおいてGal4-UAS法に基づくエンハンサートラップ系統をNPコンソーシアムとして約４６００の挿入系統を作成し、それらのすべてについてエンハンサー活性を胚および幼虫において検定しました。また挿入位置をゲノム配列上にマップして遺伝子との対応関係を２１５７カ所の独立したサイトについて明らかにしました。本データベースはGal4エンハンサートラップ系統の挿入位置とエンハンサー活性のパターンをまとめたデータベースとして公開されています。
language: en
publisher: 京都工芸繊維大学 ショウジョウバエ遺伝資源センター
  type: Organization
  label: Kyoto Institute of Technology Drosophila Genetic Resource Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12324948
landing page: http://kyotofly.kit.jp/stocks/GETDB/getdb.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0029
theme: T0001
theme: T0017
theme: T0021
status: Active @en
status: 稼動中

nbdc00237
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TABR

nbdc00237
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TABR

TABR
type: Dataset
alternative: Tropical bee reference database @en
alternative: Tropical Asian Bees Reference Database
description: TABR is a reference database of tropical asian bees. A taxon is treated as one record in this database, and each record is composed of 11 items including taxonomical information (sex, locality and depository of the type, source of the original description), distributional data and references. Users can search records by keywords from these items. @en
description: 熱帯アジア産ハナバチ類文献データベース(TABR)は、熱帯・亜熱帯アジア産ハナバチ類に関する主要な文献について、掲載された各文献中のハナバチの分類単位(種、属、科等の学名)を一つのレコードとした英語による文献データベースです。各レコードには、科名、属名、同物異名、分布のほか、文献、模式産地、模式標本の所在地など11項目を採録しています。
language: ja
language: en
publisher: 九州大学 大学院農学研究院
  type: Organization
  label: Kyushu University Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/tabr/index-j.html
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/tabr/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34735
theme: T0030
status: Active @en
status: 稼動中

nbdc00238
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-01-09
source: Integbio Database Catalog
primary topic: Soybean Proteome Database

nbdc00238
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-12
source: Integbio Database Catalog
primary topic: Soybean Proteome Database

Soybean Proteome Database
type: Dataset
alternative: ダイズプロテオームデータベース
description: This is a database of soybean proteins. The database contains comparative information on the proteomes of several tissues in various environmental conditions. The proteomes of leaf, hypocotyl, and root were determined by 2D-PAGE and can be comparatively analyzed. @en
description: 二次元電気泳動および電気泳動を介さない方法によるダイズのプロテオーム解析の結果を主に収録しているデータベースです。ダイズの各器官に存在するタンパク質や細胞内局在性を示すタンパク質やストレス応答性を示すタンパク質を経時的にダイズ写真等から閲覧することが可能です。またトランスクリプトーム解析、メタボローム解析のデータ、及び各種実験のプロトコルPDFも公開しています。
language: en
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 作物研究所
  type: Organization
  label: National Agriculture and Food Research Organization,National Institute of Crop Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19489578
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22661982
landing page: http://proteome.dc.affrc.go.jp/Soybean/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: T0025
theme: T0018
status: Active @en
status: 稼動中

nbdc00239
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-04-01
source: Integbio Database Catalog
primary topic: 民族薬物データベース

nbdc00239
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-01
source: Integbio Database Catalog
primary topic: 民族薬物データベース

民族薬物データベース
type: Dataset
title: ETHMEDmmm @en
alternative: The Data Base of Ethno-medicines in the world @en
description: 民族薬物データベースには、民族薬物資料館に保管されている生薬の標本情報及び学術情報が収録されています。その内、和漢薬4,800点（英語3,500点）、ユナニー生薬177点、タイ生薬668点、アーユルヴェーダ生薬1,949点、インドネシア（ジャムー）生薬612点を公開しています。
description: ETHMEDmmm is a database of collections which stored in The Museum of Materia Medica. It contains both general and scientific information of the samples; traditional Japanese & Chinese crude drug, Unani crude drug, Thai crude drug, Ayurvedic crude drugs and Indonesian (JAMU) crude drugs. Each entry includes common name, English name, function, properties, common uses, etc.. @en
language: ja
language: en
publisher: 富山大学 和漢医薬学総合研究所
  type: Organization
  label: University of Toyama Institute of Natural Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://ethmed.toyama-wakan.net//search/
landing page: http://ethmed.toyama-wakan.net/SearchEn/
theme: T0012
theme: T0029
theme: T0030
status: Active @en
status: 稼動中

nbdc00240
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-10-01
source: Integbio Database Catalog
primary topic: 可移植性腫瘍株一覧表

可移植性腫瘍株一覧表
type: Dataset
description: この一覧表は、全国の研究者にアンケートを送って移植腫瘍の情報を収集し、まとめたものです。1,002株の情報が収められています。
language: ja
publisher: 東北大学 加齢医学研究所
  type: Organization
  address country: 日本
landing page: http://www2.idac.tohoku.ac.jp/dep/ccr/JAPAN-2/CellC/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10036
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10112
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10141
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9986
status: 稼動中

nbdc00241
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PROSITE

nbdc00241
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PROSITE

PROSITE
type: Dataset
alternative: Database of protein domains, families and functional sites
description: ExPASy PROSITE is a database of protein domains, protein families and their functional sites. This repository also provides profiles and associated patterns, which can be used to identify the above. This version (20.91) was made available on 4 March 2013. It contains 1,661 documentation entries, 1,053 profiles and 1,308 patterns. The database can be searched by entering a document number, a ProRule description, a taxonomic series or by calling up a page, whereupon the proteins are listed according to the number of positive UniProtKB hits, from most to least. The option is also provided to have a sequence scanned against PROSITE patterns and profiles. In the Advanced search option that is available, additional criteria may be added when a scan request is entered to specify the results more accurately. @en
description: タンパク質のファミリーやドメインに関するデータベースで、主にUniProtKB/Swiss-Protエントリーのドメイン機能のアノテーションに使用されています。現在、1,000以上のファミリーやドメインに対して特徴的なパターンやプロファイルを収集しています。各ファミリーやドメインを解説した文書エントリーおよびプロファイルやパターンに基づいたProRuleエントリーで構成されています。ユーザーが入力した配列からドメインや機能部位を予測することもできます。
language: en
publisher: Swiss Institute of Bioinformatics
  type: Organization
  address country: スイス
  address country: Switzerland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16091411
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19858104
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16845026
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12230035
distribution: Distribution
  rights: prosite license.html
  access URL: ftp://ftp.expasy.org/databases/prosite/
landing page: http://prosite.expasy.org/
theme: T0021
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00242
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: GeneCards

nbdc00242
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-09
source: Integbio Database Catalog
primary topic: GeneCards

GeneCards
type: Dataset
description: オーソロジー、疾患関連、SNPs、遺伝子発現、遺伝子機能はもちろん、広範囲に存在するゲノミクス、プロテオミクス、トランスクリプトミクス情報を効率よく検索できるようにしたヒトゲノム情報のデータベースです。
description: geneCards Version 3 is a database of human genes that provides brief but comprehensive genomic related data, on all known human genes. The information consists of data on transcriptomes, proteomes, functions and disease involvement of human genes. This content was obtained from a large number of relevant sources. Approved gene symbols and standard nomenclature is used. The site provides information on a total of 122,413 genes, which include 21660 protein-coding genes, 79,344 RNA genes, 16,763 pseudogenes, 767 genetic loci, 146 gene clusters and 3,733 genes that cannot be placed in any of these categories. A simple keyword search option and an advanced search option are available. @en
language: en
publisher: Weizmann Institute of Science
  type: Organization
  address country: Israel @en
  address country: イスラエル
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9097728
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9789091
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20689021
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12424129
landing page: http://www.genecards.org/
theme: T0015
theme: T0024
theme: T0001
theme: T0007
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00243
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-06-27
source: Integbio Database Catalog
primary topic: Epigenomics

nbdc00243
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: Epigenomics

Epigenomics
type: Dataset
description: This site is a comprehensive collection of research results on chromatin modifications (histone modifications, DNA methylation, DNase footprinting) in genomes. Each record contains sample information, assay type, source data, and citations. Additionally, experimental data can be visualized on genomic sequences using the NCBI sequence viewer. @en
description: クロマチン修飾（ヒストン修飾、DNAメチル化、DNA分解酵素フットプリント法）のゲノム網羅的研究結果を収録しています。一研究につき、サンプル情報、アッセイの種類、データソース、文献情報が登録されており、実験データはNCBIシーケンスビューワを用いてゲノム配列上に視覚的に分かりやすく表示されます。 NCBIによるEpigenomicsの運用は終了しました。引き続きのデータ利用やダウンロードに関する情報がNCBIのサイト （http://www.ncbi.nlm.nih.gov/epigenomics/browse/） に掲載されています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21075792
distribution: Distribution
  rights: epigenomics-data-access-policies
landing page: http://www.ncbi.nlm.nih.gov/epigenomics
theme: T0021
theme: T0007
theme: T0005
theme: T0013
theme: T0030
status: 運用終了
status: Closed @en

nbdc00244
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: dbVar

nbdc00244
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: dbVar

dbVar
type: Dataset
alternative: Database of Genomic Structural Variation @en
description: 大規模なゲノム構造変異（挿入、欠失、転座、逆位など）に関する情報を収録しています。
description: This database contains information on large-scale variations in genomic structure (insertions, deletions, translocations, and inversions, etc.). Information can be searched by keyword, a research browse list, or the genome browser. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: ftpsite
  rights: introduction
  access URL: ftp://ftp.ncbi.nlm.nih.gov/pub/dbVar/data/
landing page: http://www.ncbi.nlm.nih.gov/dbvar/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
theme: T0030
status: Active @en
status: 稼動中

nbdc00245
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Plasma Proteome Database

nbdc00245
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Plasma Proteome Database

Plasma Proteome Database
type: Dataset
description: ヒト血漿タンパク質とそのisoformの包括的リソースです。Isoform特異的発現、関連する疾患、局在、翻訳後修飾、一塩基多型の情報が収集されています。このデータベースで提供される情報は、徹底的な文献調査のもと手作業によるアノテーション付与がなされています。各タンパク質は、キーワードによる検索、あるいは分子機能、ドメイン、モチーフ、PTM、細胞構成成分のカテゴリーから辿ることができます。
description: This database is a comprehensive resource on proteins and their isoforms contained in human blood plasma and serum. It contains information on isoform-specific expression, associated disease, localization, post-translational modifications, and single nucleotide polymorphisms. All of the information is manually annotated after a thorough review and investigation of the literature. Each protein can be searched and browsed by keywords, molecular function, domains, motifs, PTM, and cellular constituents. @en
language: en
publisher: Johns Hopkins University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16041672
distribution: Distribution
  rights: faq.html
  access URL: http://www.plasmaproteomedatabase.org/download.html
landing page: http://www.plasmaproteomedatabase.org/
theme: T0021
theme: T0015
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00246
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Amphibian Species of the World

nbdc00246
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Amphibian Species of the World

Amphibian Species of the World
type: Dataset
description: This is a database of amphibian species in the World, with stratified biological classification. It contains information on synonyms, English name, habitat (distribution), subclassification, comments, and literature for each classification (class, order, family, subfamily, genus, and species). @en
description: 世界に生息する両性類の種のデータベース。階層化された両生類の生物学上の分類が表示され、各分類（網:class、目:order、科:family、亜科:subfamily、属:genus、種:species）ついて同義語、英語名、生息地域（分布）、下位分類、コメントを見ることができます。
language: en
publisher: American Museum of Natural History
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://research.amnh.org/vz/herpetology/amphibia/index.php
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8292
theme: T0019
theme: T0027
status: Active @en
status: 稼動中

nbdc00247
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-02-19
source: Integbio Database Catalog
primary topic: AnoBase

nbdc00247
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-02-19
source: Integbio Database Catalog
primary topic: AnoBase

AnoBase
type: Dataset
alternative: The Anopheles Database @en
description: This is a database on mosquitoes that are vectors for malaria such as Anopheles gambiae and Aedes aegypti, as well as their genomes. It contains information related to research on drug resistance, species name, and vectors. The database can be filtered by species name or source region of infestation @en
description: ガンビエハマダラカ、ネッタイシマカなどのマラリアを媒介する蚊の種名情報やゲノム情報のデータベースです。
language: en
publisher: The National Institute of Allergy and Infectious Diseases (NIAID)
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://anobase.vectorbase.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7165
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7159
theme: T0001
theme: T0019
status: 休止
status: Inactive @en

nbdc00248
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Avibase

nbdc00248
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-15
source: Integbio Database Catalog
primary topic: Avibase

Avibase
type: Dataset
alternative: The World Bird Database
description: 全世界に生息する鳥に関するデータベース。鳥の分布、分類、同義語、各言語での名称表記法（日本語もある）等を見ることができ、分布は世界地図（画像）で見ることができます。鳥の調査のために世界各地を訪れた際の記録も公開されています。
description: This is a database of birds. It contains information on distribution, classification, and synonyms in a variety of languages. The distribution can be viewed as a world map. It also contains records from world-wide investigations of birds. @en
language: en
publisher: Bird Studies Canada
  type: Organization
  address country: カナダ
  address country: Canada @en
landing page: http://avibase.bsc-eoc.org/avibase.jsp
theme: T0014
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8782
status: Active @en
status: 稼動中

nbdc00249
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-01-22
source: Integbio Database Catalog
primary topic: BOLD

nbdc00249
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-22
source: Integbio Database Catalog
primary topic: BOLD

BOLD
type: Dataset
alternative: Barcode of Life Data Systems @en
description: DNAバーコード （生物種を特徴付ける短いDNA配列）のデータベースです。 以下の4つのデータベースで構成されています。 （1）「Public Data Portal」 公開されたバーコード情報を収録したデータベース。 （2）「BIN Database」 種に固有な配列クラスターであるバーコードインデックス番号（BINs）のデータベース。 （3）「Publication」 文献のデータベース。 （4）「Primer」 バーコードを作成するために使用するプライマーのデータベース。 また、各データを検索、利用するためのページとして、公開情報を検索する「DATA PORTAL」、教育のためのプラットフォームとなる「EDUCATION PORTAL」、BINsを検索することのできる「BIN DATABASE」、バーコードやその他の配列の収集、分析をサポートするデータコレクションや解析環境を収録した「WORKBENCH」が備えられています。
description: BOLD is a portal database for the acquisition, storage, analysis, and publication of DNA barcode records. It's constructed with four databases; 1) Public Data Portal is a data retrieval interface that allows for searching all 1.3M public records in BOLD using multiple search criteria including geography, taxonomy, and depository. Search results can be summarized, plotted on high-res maps, and downloaded. 2) BIN database is a searchable database of Barcode Index Numbers (BINs), sequence clusters that closely approximate species. 3) Publication is a collection of barcode publications and publications that have utilized barcode records. 4) Primer database is a comprehensive registry of primers used in the generation of barcode sequences. @en
language: en
publisher: The Consortium for the Barcode of Life (CBOL)
  type: Organization
  address country: Global
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18784790
landing page: http://v4.boldsystems.org
theme: T0014
theme: T0027
theme: T0005
status: Active @en
status: 稼動中

nbdc00250
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BGPlants

BGPlants
type: Dataset
alternative: Data-base on the plants kept in the Botanical Garden
description: 施設に保存されている研究用植物のデータベース。日本全国の植物園などの施設に系統保存されている植物データの登録・公開を行っています。
language: ja
publisher: 研究用植物データベース作成グループ
  type: Organization
  address country: 日本
landing page: http://bean.bio.chiba-u.jp/bgplants/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0019
status: 休止

nbdc00251
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Bio-Resourse Network

nbdc00251
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Bio-Resourse Network

Bio-Resourse Network
type: Dataset
description: Bio-Resourse Networkの各種システムは、微生物株の分類同定を支援し、ユーザの研究資材データベース作成を支援します。
language: ja
language: en
publisher: 独立行政法人科学技術振興機構
  type: Organization
  label: Japan Science and Technology Agency @en
  address country: Japan @en
  address country: 日本
landing page: http://bio.tokyo.jst.go.jp/biores/index.htm
theme: T0014
status: 運用終了
status: Closed @en

nbdc00252
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BioCyc

nbdc00252
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BioCyc

BioCyc
type: Dataset
description: This is a collection of metabolic pathways and their genomes for each species. It contains predictions of metabolic pathways, genome regions of unidentified enzymes, and operons for species, about organisms which sequence analysis is completed. Furthermore, the site has the information on metabolic pathway collected from journal articles, a genome browser, visualization tools, and a search tool. @en
description: 各種生物の代謝マップが納められたパスウェイデータベースです。
language: en
publisher: SRI International
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22102576
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16246909
distribution: Distribution
  description: Tabular
  rights: download.shtml
  access URL: http://biocyc.org/download.shtml
landing page: http://biocyc.org/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/666
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/155892
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/358
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/160
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/623
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/83334
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1773
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/813
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/210
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/727
theme: T0026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2104
theme: T0005
theme: T0006
theme: T0030
status: Active @en
status: 稼動中

nbdc00253
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-08-19
source: Integbio Database Catalog
primary topic: Blocks

nbdc00253
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-08-19
source: Integbio Database Catalog
primary topic: Blocks

Blocks
type: Dataset
description: 類似タンパク質のアミノ酸配列のマルチプルアライメントから自動的に抽出したモチーフのデータベースです。
description: This is a database of automatically extracted motifs from multiple amino acid sequence alignments of similar proteins. @en
language: en
publisher: Fred Hutchinson Cancer Research Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: license.html
  access URL: http://blocks.fhcrc.org/blocks/help/blocks_release.html
landing page: http://blocks.fhcrc.org/
theme: T0021
theme: T0028
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 運用終了
status: Closed @en

nbdc00254
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CAGE Basic Viewer

nbdc00254
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: CAGE Basic Viewer

CAGE Basic Viewer
type: Dataset
description: CAGE Viewer is a database of mouse CAGE sequencing information. The database contains sequences and statistics on data obtained from Cap-Analysis gene expression experiments by the FANTOM consortium. Users can access data by library, tissue, developmental stage, or chromosome. Several search functions are supported. @en
description: CAGE法によって集められたRNAライブラリやCAGEライブラリなどのデータを検索、閲覧するシステムです。CAGE(Cap Analysis Gene Expression)法とは、遺伝子プロモーター領域を効率よく同定できる手法です。このCAGE法を用いることによって、遺伝子の転写開始点を見つけるために必要な短い配列（タグ）を短時間で大量に収集することができます。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://fantom31p.gsc.riken.jp/cage/mm5/
theme: T0021
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
status: Active @en
status: 稼動中

nbdc00255
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: CarpeDB

nbdc00255
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CarpeDB

CarpeDB
type: Dataset
alternative: A Comprehensive Database on the Genetics of Epilepsy @en
description: 遺伝性てんかんの包括的なデータベースで、遺伝子の情報や論文情報を閲覧できます。また新規データの登録も受付けています。
description: CarpeDB is a portal database of epilepsy genetics. It contains information of epilepsy genes and associated publications. Researchers are able to submit new epilepsy genes and/or candidates, or scientific papers and/or abstracts. This database is available as a novel source for epilepsy researchers by featuring scores of epilepsy genes and associated publications in one locus. @en
language: en
publisher: The University of Alabama
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.carpedb.ua.edu/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00256
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: CGAP

nbdc00256
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: CGAP

CGAP
type: Dataset
alternative: The Cancer Genome Anatomy Project
description: This database is a collection of gene expression profiles of normal, precancer, and cancer cells. It is a project of the National Cancer Institute in the US, with the objective of improving detection, diagnosis, and treatment of cancer. Resources for this project can be obtained through cancer-related communities. @en
description: 種々の臓器における正常、前癌、癌の各細胞で発現している遺伝子を収録したデータベースです。米国立癌研究所（NCI）のプロジェクトで、正常、前がん状態、がん細胞の発現プロファイルを決定し、がんの発見や診断、治療を向上させることを目標としています。本プロジェクトのリソースはがん関連コミュニティにおいて広く入手することができます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11684445
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12082587
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10889913
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11269648
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10933042
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11568889
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12449737
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12618197
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12743998
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12119410
distribution: Distribution
  description: README
  access URL: http://cgap.nci.nih.gov/Info/CGAPDownload
landing page: http://cgap.nci.nih.gov/
theme: T0021
theme: T0015
theme: T0024
theme: T0026
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00257
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: Codon Table

nbdc00257
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: Codon Table

Codon Table
type: Dataset
description: Codon Table is a database of mRNA codon interpretations and statistics, such as frequency of use in the genome. The database contains cytoplasmic and mitochondrial genetic code information for several species, including animals, plants, and bacteria. @en
description: 各種生物のコドンテーブルを掲載。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.kazusa.or.jp/java/codon_table_java/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/44689
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/162425
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/382
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5791
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9939
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/573
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4097
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5141
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7152
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4565
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3888
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7668
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10038
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3885
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/485
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9036
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/90371
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4513
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1280
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4577
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/306
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5691
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8355
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4104
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4113
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9549
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/60556
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10095
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10118
status: Active @en
status: 稼動中

nbdc00258
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Conserved Domains and Protein Classification

nbdc00258
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Conserved Domains and Protein Classification

Conserved Domains and Protein Classification
type: Dataset
description: 蛋白質の保存されたドメイン構造についてのアノテーションデータベースです。
description: This site contains annotations and tools for protein domain structures. It is comprised of: (1) Conserved Domain Database (CDD), which contains information on well-annotated multiple sequence alignment models for ancient domains and full-length proteins,(2) CD-Search and Batch CD-Search for search domains in the Conserved Domain Database (CDD) and conserved domains on multiple protein sequences respectively,(3) Subfamily Protein Architecture Labeling Engine (SPARCLE), which is a resource of the functional characterization of protein sequences,(4) Conserved Domain Architecture Retrieval Tool (CDART) for search protein similarities based on domain architecture,r and (5) CDTree for a helper application. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17135202
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21109532
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15215404
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12368255
distribution: Distribution
  description: README
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/
landing page: http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
theme: T0028
theme: T0029
theme: T0007
status: Active @en
status: 稼動中

nbdc00259
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CREB Target Gene Database

nbdc00259
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CREB Target Gene Database

CREB Target Gene Database
type: Dataset
description: This is a database of target genes for the transcription factor CREB (cyclic AMP response element-binding protein). The following information is included for each target gene: 1. CREB binding site on the promoter 2. Promoter localization due to CREB 3. gene activation by cAMP in cellular tissues @en
description: 転写因子CREB（cyclic AMP response element-binding protein：cAMP応答配列結合タンパク質）の標的遺伝子のデータベースです。データベース内の各遺伝子には以下の情報が与えられています。 1. プロモータ上のCREB結合部位 2. CREBによるプロモータ局在 3. 細胞組織内のcAMPによる遺伝子活性化
language: en
publisher: Salk Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15753290
landing page: http://natural.salk.edu/CREB/
theme: T0021
theme: T0024
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00260
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DGVa

nbdc00260
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DGVa

DGVa
type: Dataset
alternative: Database of Genomic Variants Archive @en
description: ゲノム上の構造多型データベース。すべての生物種および表現型の生物の構造多型を対象に登録されたデータを、閲覧、ダウンロードすることができます。収録データは、構造多型、ゲノム上の挿入(insertions)、欠失(deletions)、コピー数多型(CNVs：copy number variants)が対象となっています。NCBIのDbVarとカナダのDGVとの国際共同データベースの一環です。
description: DGVa (Database of Genomic Variants archive) is a repository that offers the storage of, access to and sharing of available genomic structural variants, in all species. This repository receives information from, and supplies data to, a number of resources. The database contains information on variations at the single nucleotide level as well as on variations ranging from tens to thousands of base pairs and more in size. Data on deletions, insertions, translocations and inversions are supplied. These variations are important in the medical field since they probably play a major role in the development of disease. It is also becoming evident that genomic structural variations have an important effect on an individual's characteristics and is therefore of significant value to study and understand, as is the role it has played in the evolution of species. Data can be downloaded as DVF files, searched for in the Ensembl Genome Browser or found in the Database of Genomic Variants. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
distribution: Distribution
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/dgva/data-download
landing page: http://www.ebi.ac.uk/dgva/
theme: T0016
theme: T0021
theme: T0015
theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00261
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Disease Ontology Wiki

nbdc00261
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Disease Ontology Wiki

Disease Ontology Wiki
type: Dataset
description: This is a disease ontology database. It is designed to link datasets related to disease, which includes genetic data, clinical data and symptoms. @en
description: 疾患オントロジー。この疾患オントロジーでは、病気とその関連症状を特定の医学コードに容易にマッピングできるように設計されています。
language: en
publisher: Center for Genetic Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19594883
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18314582
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19478018
distribution: Distribution
  rights: License
  access URL: http://do-wiki.nubic.northwestern.edu/do-wiki/index.php/Download_DO
landing page: http://do-wiki.nubic.northwestern.edu/index.php/Main_Page
theme: T0015
theme: T0019
status: Active @en
status: 稼動中

nbdc00262
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EcoCyc

nbdc00262
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: EcoCyc

EcoCyc
type: Dataset
description: 大腸菌のゲノム、代謝産物、代謝経路に関する情報データベースです。文献から得られた遺伝子、遺伝子産物（タンパク質、酵素）、関連するパスウェイ、遺伝子の位置などの情報やパスウェイマップが収録されています。BioCyc database collectionの1つです。
description: This is a database provides information on genes, metabolites, reactions, operons and metabolic pathway of Escherichia coli. The data were curated based on literature. It is a member of the BioCyc database collections. @en
language: en
publisher: SRI International
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21097882
distribution: Distribution
  description: flatfile-format.html
  rights: all-reg.shtml
  access URL: http://ecocyc.org/download.shtml
landing page: http://ecocyc.org/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0010
theme: T0026
theme: T0001
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00263
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-05-09
source: Integbio Database Catalog
primary topic: EGO

nbdc00263
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-05-09
source: Integbio Database Catalog
primary topic: EGO

EGO
type: Dataset
alternative: Eukaryotic Gene Orthologues
description: 真核生物のオーソロガス遺伝子のデータベースです。 Dana-Farber Cancer InstituteによるEGOの運用は終了しました。EGOのデータはTGIのFTPサイト （ftp://occams.dfci.harvard.edu/pub/bio/tgi/data/EGO/） からダウンロードが可能です。また、TGIプロジェクトの情報はDana-Farber Cancer Instituteのサイト （http://compbio.dfci.harvard.edu/tgi/） に掲載されています。
language: en
publisher: Dana-Farber Cancer Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://compbio.dfci.harvard.edu/tgi/ego/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0027
theme: T0001
status: 運用終了
status: Closed @en

nbdc00264
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ENZYME

nbdc00264
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ENZYME

ENZYME
type: Dataset
alternative: Enzyme nomenclature database @en
description: ExPASy ENZYME is a database of the classified naming system of enzymes and information related to their names. This database contains 5,096 active entries and was last updated on 6 March 2013. The repository can be searched by entering an EC number, enzyme class, description (official or alternative name), chemical compound or cofactor or by entering one or more words found in the comments attached to the entries. @en
description: 酵素の分類、名前、機能、基質、生成物、阻害剤などを登録したデータベースです。
language: en
publisher: Swiss Institute of Bioinformatics
  type: Organization
  address country: スイス
  address country: Switzerland @en
distribution: Distribution
  description: enzuser.txt
  rights: enzuser.txt
  access URL: ftp://ftp.expasy.org/databases/enzyme/
landing page: http://enzyme.expasy.org/
theme: T0028
theme: T0019
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00265
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EROP-Moscow

nbdc00265
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EROP-Moscow

EROP-Moscow
type: Dataset
alternative: Endogenous Regulatory OligoPeptide knowledgebase
description: EROP(Endogenous Regulatory OligoPeptide)-Moscow is a database that provides information on a collection of oligopeptide sequences. These sequences contain any number of amino acid residues, from 2 to 50. Annotations of a high level of accuracy, such as an oligopeptide's source, function, structure and post-translational modifications are provided. This database contains information on 10,229 sequences. Information can be retrieved by entering the EROP-accession ID, the name of the oligopeptide, its function, the family name and/or the biological classification (oligopeptide source). The database may also be searched by entering physicochemical features, for instance, the amino acid number, its sequence or molecular mass. This version was released on 21 August 2010. @en
description: オリゴペプチド配列のデータベース。オリゴペプチドの構造、機能、翻訳後修飾等、クォリティの高いアノテーションを提供しています。
language: en
publisher: Swiss Institute of Bioinformatics
  type: Organization
  address country: スイス
  address country: Switzerland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381860
landing page: http://erop.inbi.ras.ru/
theme: T0021
theme: T0008
theme: T0007
status: Active @en
status: 稼動中

nbdc00266
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Experimental Animal Database Search

Experimental Animal Database Search
type: Dataset
description: 実験動物の情報データベースです。日本実験動物協会が収集及び提供する動物実験関連情報を検索することができます。
language: ja
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  address country: 日本
landing page: http://shigen.lab.nig.ac.jp/animal/animal1.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33208
theme: T0014
theme: T0015
theme: T0001
theme: T0017
status: 稼動中

nbdc00267
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-11
source: Integbio Database Catalog
primary topic: FABA

nbdc00267
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-11
source: Integbio Database Catalog
primary topic: FABA

FABA
type: Dataset
alternative: Four-dimensional Ascidian Body Atlas @en
description: 多細胞生物の発生の時間的経過に伴う３次元構造画像のデータベース。カタユウレイボヤの受精卵から孵化後幼生までの26段階の発生ステージについて、形態の3次元画像および断面画像を取得し、データベース化しています。これらの画像は、Alexa蛍光ファロイジンで染色したホヤのF-アクチンを共焦点レーザー走査顕微鏡（CLSM）で可視化し、3000枚以上の画像を再構築することにより得られたものです。
description: FABA is a database of the developmental stages of Ciona intestinalis, with 3D images taken at critical time points, as well as movies of the development process, for standardization of C. intestinalis studies. Images were acquired at zygote, cleavage, gastrula, neurula, tailbud, and larva stages. Downloads are available, as is a companion site (FABA2) with images of organisms post-hatching. @en
language: en
publisher: 慶應義塾大学
  type: Organization
  label: Keio University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17557317
distribution: Distribution
  access URL: https://www.bpni.bio.keio.ac.jp/chordate/faba/1.4/download/download.html
landing page: https://www.bpni.bio.keio.ac.jp/chordate/faba/1.4/top.html
theme: T0014
theme: T0022
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7719
status: Active @en
status: 稼動中

nbdc00268
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: FACTS

FACTS
type: Dataset
alternative: Functional Association/Annotation of cDNA Clones from Text/Sequence Sources
description: 遺伝子に、文献情報をマッピングしたデータベースです。
publisher: 国立研究開発法人理化学研究所
  type: Organization
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12819151
landing page: http://facts.gsc.riken.go.jp/
theme: T0001
theme: T0030
status: 休止

nbdc00269
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-03-14
source: Integbio Database Catalog
primary topic: FIDD

nbdc00269
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-03-14
source: Integbio Database Catalog
primary topic: FIDD

FIDD
type: Dataset
alternative: The Frequency of Inherited Disorders Database
description: 世界中の遺伝病に関する情報を文献から収集・整理したデータベース。
description: FIDD (Frequency of Inherited Disorders Database) belongs to the Institute of Medical genetics at the Cardiff University School of Medicine. This database provides information about the frequency of human Mendelian disorders and how widespread these diseases occur. The site was created for the purpose of use in medical research and the study of epidemiological occurrences in order to establish genetic service delivery. FIDD contains a total of 1580 records of human genetic disorders listed in 14 groups related to the organ, body system or biological function affected. There are 280 disorders that are covered, and of them 109 are autosomal dominant, 136 are autosomal recessive and 35 are X-linked. There are 969 articles, which have been published in 215 journals, a variety of 119 books, 9 doctoral theses and 22 reports that were scrutinized to obtain the information available in this repository. The results reveal 24 cardiac disorders, 34 endocrine disorders and 44 disorders of the eye. It also contains information on 31 disorders of the gastrointestinal system, 353 hematological anomalies and 22 disorders causing mental handicaps. A total of 234 disorders of the metabolic system and 588 affecting the neurological and neuromuscular systems are described, and 3 psychiatric disorders, 35 of the renal system and 25 respiratory disorders are also covered. The information content also include 72 disorders of the skeletal and craniofacial group, 46 skin anomalies and 69 disorders that could not be allocated to a specific body system. A keyword search option is available whereby information can be retrieved by entering the body system, disease, population or OMIM number in question. @en
language: en
publisher: Cardiff University School of Medicine
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: https://medicapps.cardiff.ac.uk/fidd/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00270
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: FishBase

nbdc00270
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: FishBase

FishBase
type: Dataset
description: 世界中に生息する魚類の詳細な情報を集めたデータベースです。
description: FishBase is a relational database containing information about fish around the world to cater to different professionals such as research scientists, fisheries managers, zoologists and many more. Each entry contains scientific names, common names , pictures, links to other tables, links to internet sources, etc. Moreover, various genetic data are available for many species. All items are referenced, with full citation. Scientific names are verified against Eschmeyer's Catalog of Fishes. Users enter FishBase through common names which classified by country and language. Full academic course with exercises in Ichthyology is available in Fish-On-Line. @en
language: ja
language: en
publisher: FishBase Consortium
  type: Organization
  address country: Global
distribution: Distribution
  rights: www.fishbase.org
  access URL: http://www.fishbase.org/Download/index.htm
landing page: http://www.fishbase.org/search.php?lang=English
landing page: http://www.fishbase.org/search.php?lang=Japanese
theme: T0014
theme: T0029
theme: T0019
status: Active @en
status: 稼動中

nbdc00271
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Flytrap

nbdc00271
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Flytrap

Flytrap
type: Dataset
description: Flytrap is an HTML-based repository on gene expression. This database provides information on gene expression patterns in the brain of the fruit fly Drosophila. The P-element transposon of Drosophila makes it possible to develop enhancer-trap elements containing minimal promoter regions, which induce transcription. The data is displayed as a list of all the lines studied. This list still needs to be completed and many images have not been annotated or mapped yet. The final list will, after completion, contain 300 lines. A basic keyword search option is available. @en
description: ショウジョウバエ脳におけるP（Gal4）line の発現パターンを収録したデータベースです。
language: en
publisher: The University of Edinburgh
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://www.fly-trap.org/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0024
theme: T0029
theme: T0007
status: Active @en
status: 稼動中

nbdc00272
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-26
source: Integbio Database Catalog
primary topic: FMRIDC

nbdc00272
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-26
source: Integbio Database Catalog
primary topic: FMRIDC

FMRIDC
type: Dataset
alternative: The fMRI Data Center @en
description: 機能的磁気共鳴映像法（fMRI）データの集積所としての役割をはたしているサイトです。
language: en
publisher: University of California
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.fmridc.org/f/fmridc
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00273
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-01-25
source: Integbio Database Catalog
primary topic: FMA

nbdc00273
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-25
source: Integbio Database Catalog
primary topic: FMA

FMA
type: Dataset
alternative: Foundational Model Anatomy @en
alternative: FoundationalModelAnatomy
description: FMA is a computer-based knowledge source for biomedical informatics. This site is open source and available for general use. It contains a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. Its ontological framework can be applied and extended to all other species. @en
description: 人体の解剖学における用語を統一するための情報データベースです。ヒトの体の解剖学の用語について、人間にもコンピュータにも理解できるようにオントロジーをフレームワーク化しています。 このサイトはオープンソースであり、ダウンロードして使用します。また、このオントロジーフレームワークは他の生物種まで拡大して適用できます。
language: en
publisher: University of Washington
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14759820
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14759821
landing page: http://sig.biostr.washington.edu/projects/fm/
theme: T0014
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00274
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GeMCRIS

nbdc00274
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: GeMCRIS

GeMCRIS
type: Dataset
alternative: Genetic Modification Clinical Research Information System @en
description: NIHにより登録されたヒトの遺伝子導入研究に関する情報を提供するデータベースです。研究対象となる疾患、研究に使用される遺伝子産物、遺伝子産物の配布情報、プロトコルの概要等を収録しています。プロトコル、研究者、用語集からの絞り込みと検索が可能です。
description: The GeMCRIS is a resource that provides information of human gene transfer research registred with the NIH, which contains medical onditions under study, gene products used study, information of delivery of gene products, and summary of protocols. Searches are possible by protocol, researcher, or keywords. @en
language: en
publisher: Office of Biotechnology Activities
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.gemcris.od.nih.gov/Contents/GC_HOME.asp
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00275
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GENATLAS

nbdc00275
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GENATLAS

GENATLAS
type: Dataset
description: ヒトゲノム計画の成果を公開している分子生物学データベースです。
description: Genatlas is a collection of information on gene mapping and the diseases they are genetically related to. The data is obtained by scanning available literature on a regular basis. This database contains information on 22,723 genes, 5,065 phenotypes and 113,755 citations. New information is available immediately after the site is updated and this is done daily. Several search options are available. A search for all genes involved with one disease, called a phenotype search, reveals information pertaining to chromosomal diseases. A full search of the gene Database, on the basis of DNA characteristics, RNA characteristics, protein characteristics, expression, and/or pathology gives information about all diseases related to one gene. A search of the Citation Database leads to a list of all citations about a particular gene or disease. @en
language: en
publisher: Universite Rene Descartes
  type: Organization
  address country: France @en
  address country: フランス
landing page: http://genatlas.medecine.univ-paris5.fr/
theme: T0016
theme: T0021
theme: T0015
theme: T0024
theme: T0001
theme: T0007
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00276
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GenBank

nbdc00276
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GenBank

GenBank
type: Dataset
description: This is a public database of DNA sequences with annotations. It is a part of the International Nucleotide Sequence Database Collaboration, and cooperates with the DNA DataBank of Japan (DDBJ) as well as the European Molecular Biology Laboratory (EMBL). @en
description: 公に利用できる注釈付きDNA配列のデータベース。 The International Nucleotide Sequence Database Collaborationの一部。 the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL) と相互にデータ交換を毎日行っています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21071399
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22144687
distribution: Distribution
  description: samplerecord
  rights: genbank
  access URL: ftp://ftp.ncbi.nlm.nih.gov/genbank/
landing page: http://www.ncbi.nlm.nih.gov/genbank/
theme: T0021
theme: T0001
theme: T0005
theme: T0006
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00277
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BioGPS

nbdc00277
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BioGPS

BioGPS
type: Dataset
description: ヒトおよびマウスの遺伝子発現情報データベース。
description: This site collects information of genes, and has customizability and extensibility features.The data can be searched by gene symbol, gene ID, gene ontology, Affymetrix IDs, Interpro, and genomic intervals. It contains information of tissue-specific expression levels, many kinds of accessions, functional annotations, links to information of transcripts and proteins, and citations. @en
language: en
publisher: Genomics Institute of the Novartis Research Foundation
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19919682
distribution: Distribution
  rights: terms
  access URL: http://biogps.org/downloads/
landing page: http://biogps.org/
theme: T0015
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00278
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GeneLoc

nbdc00278
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GeneLoc

GeneLoc
type: Dataset
description: ヒト染色体の統合化されたマップを公開しています。
description: geneLoc Version 3.09 is a database consisting of integrated maps for all human chromosomes. Each gene is assigned a geneCards ID indicating its location in the human genome. The database takes into account every exon and classifies DNA segments, among other criteria, according to sequence tagged sites and expressed sequence tag clusters. Links to relevant databases are provided. This repository contains a total of 543,907 entries of which 115,002 are gene symbols, 23,768 are EST clusters and 405,137 are markers. A keyword search option is available. @en
language: en
publisher: Weizmann Institute of Science
  type: Organization
  address country: Israel @en
  address country: イスラエル
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12855462
landing page: http://genecards.weizmann.ac.il/geneloc/index.shtml
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00279
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GenomeNet

nbdc00279
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: GenomeNet

GenomeNet
type: Dataset
description: GenomeNet is a Japanese network of database resources and bioinformatics tools constructed by Kyoto University Bioinformatics Center. GenomeNet provides following resources and services. 1. Integrated database retrieval system (DBGET) 2. Databases for genome research and biomedical science (KEGG, varDB, community databases of collaborators, etc) 3. Bioinformatics tools for sequence, genome and chemical analysis (BLAST / FASTA, OC Viewer, SIMCOMP / SUBCOMP, etc) @en
description: ゲノムネットは、生物学・医学に関連したさまざまなデータベースと解析ツールが誰でも自由に利用できるインターネットサービスです。世界中に存在する生物学・医学関連の多様なデータベースを、各研究者のデスクトップで統合して利用できる環境を目指しています。
language: ja
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: aaindex.txt
  access URL: http://www.genome.jp/ja/gn_ftp_ja.html
  access URL: http://www.genome.jp/en/gn_ftp.html
landing page: http://www.genome.jp/ja/
landing page: http://www.genome.jp/en/
theme: T0031
status: Active @en
status: 稼動中

nbdc00280
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GISD

nbdc00280
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GISD

GISD
type: Dataset
alternative: Global Invasive Species Database
description: The GISD is a database of information about species that negatively impact biodiversity. It contains information of invasive alien species which covers all taxonomic groups from micro-organisms to animals and plants in all ecosystems and is supplied by or reviewed by expert contributors from around the world. Each entry contains taxonomic name, organism type, habitat description, general impacts, introduction pathways to new locations, etc.. Users are able to search with species name, location, habitat type, organism type or taxonomic name. @en
description: 全世界の侵入生物種（invasive species）に関するデータベース。
language: en
publisher: The Invasive Species Specialist Group
  type: Organization
  address country: Global
landing page: http://www.issg.org/database/welcome/
theme: T0014
theme: T0030
status: Active @en
status: 稼動中

nbdc00281
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-04-16
source: Integbio Database Catalog
primary topic: GOALL

nbdc00281
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-16
source: Integbio Database Catalog
primary topic: GOALL

GOALL
type: Dataset
description: GeneOntology、TraitOntology、Taxonomyのデータ構造のビューア。元のデータはGene Ontology Database http://www.godatabase.org/dev/database/ から得ています。
description: GOALL is a tool for visualization of interrelated data. The viewer graphically plots data, which can then be searched within the browser window to obtain further information. Several datasets are already plotted in the tool and can be searched and examined in detail. @en
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/ontology/
theme: T0001
theme: T0019
status: 休止
status: Inactive @en

nbdc00282
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: RIKEN Hub Database Project

nbdc00282
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: RIKEN Hub Database Project

RIKEN Hub Database Project
type: Dataset
description: タイリングアレイ（遺伝子発現情報）とゲノム情報を組み合わせて統計的に解析することにより、遺伝子の構造を高い精度で推定する新しい情報処理技術を開発しました。この技術をシロイヌナズナのデータに適用し、これまでに知られている約２万７千の遺伝子領域のほかにも、約５千２百箇所の領域で発現している新たな遺伝子構造を見出し公開しています。遺伝子のネットワークや変異体の有無に関する情報もあわせて提供しています。「Forward Genetics」、「Reverse Genetics」、「Data Integration」、「Estimation of Candidate Genes」を連携させた「統合Genetics」としてのシステムであり、また、この処理を行うために独自に開発したプログラムARTADE（アートエード）の全ソースコード（プログラム内容）も公開しています。近年のゲノミクスの発展によって、膨大な量の公開データとバイオリソースの蓄積が進行しています。これらをバイオインフォマティクスによって統合化し、より効率的な原因遺伝子探索のストラテジーを作り出すことを目的としています。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://omicspace.riken.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 運用終了
status: Closed @en

nbdc00283
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HIV Structural Database and Chem-BLAST

nbdc00283
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HIV Structural Database and Chem-BLAST

HIV Structural Database and Chem-BLAST
type: Dataset
description: Chem-BLAST provides information of similar chemicals in terms of structure, using data of PDB and PubCHEM. A taxonomy of structural fragments is used for annotating, querying and analyzing chemical compounds. @en
description: HIVの構造データベース。2次元構造（化学式）、3次元構造（立体構造）どちらも見ることができます。
language: en
publisher: National Institute of Standards and Technology
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15861385
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16508960
landing page: http://xpdb.nist.gov/hivsdb/hivsdb.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/12721
theme: T0012
theme: T0023
theme: T0022
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0011
status: Active @en
status: 稼動中

nbdc00284
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: HOVERGEN

nbdc00284
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: HOVERGEN

HOVERGEN
type: Dataset
alternative: Homologous Vertebrate Genes Database
description: HOVERGEN is a database of homologous vertebrate genes using the ACNUC sequence database. It contains all of vertebrate protein sequences from the UniProt Knowledgebase and all the corresponding nucleotide sequences in EMBL, and those information were structured in the ACNUC database. @en
description: ACNUC sequence databaseを下地とした脊椎動物遺伝子のデータベース。FamFetch application をインストールすると、GUIからアライメントや系統樹を見ることができます。
language: en
publisher: Pole BioInformatique Lyonnais
  type: Organization
  label: Pole Bioinformatique Lyonnais @en
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8036164
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15713731
landing page: http://pbil.univ-lyon1.fr/databases/hovergen.php
theme: T0021
theme: T0001
theme: T0007
theme: T0027
status: Active @en
status: 稼動中

nbdc00285
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Hoppsigen

nbdc00285
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Hoppsigen

Hoppsigen
type: Dataset
alternative: Homologous Processed Pseudogenes database
description: Hoppsigen is a nucleic database. It provides information on homologous retroelements (like SINE and LINE). There are 5,823 human retroelements and 3,934 mouse retroelements that have been identified and are contained in the repository. The non-functional sequences were given the name pseudogenes. The database, however, also contains functional genes obtained from ENSEMBL. A multiple alignment was calculated between the functional genes and their homologous retroelements. This was done for each family. A phylogenetic tree was also determined for each alignment and is available in the database. A www-query search option is provided. @en
description: プロセス型偽遺伝子のデータベース。
language: en
publisher: Pole BioInformatique Lyonnais
  type: Organization
  label: Pole Bioinformatique Lyonnais @en
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608268
landing page: http://pbil.univ-lyon1.fr/databases/hoppsigen.html
theme: T0021
theme: T0028
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00286
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HOSTS

nbdc00286
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HOSTS

HOSTS
type: Dataset
alternative: A Database of the World's Lepidopteran Hostplants @en
description: 世界中に生息するチョウやガの幼虫が食べる植物の情報を集めたデータベース。
description: HOSTS is a database that provides information on the host plants for Lepidoptera, an order of insects that comprises the butterflies and moths of the world. This repository contains data obtained from 180,000 records about 22,000 Lepidoptera species. Although there is still much to be discovered out there, this may be considered the most extensive collection of data on this topic available at present. Text Search and Drill-down Search options are provided. In the Drill-down search mode, the Lepidoptera or the plant family name is entered. The family group, genus and species are then selected, the one after the other, as the drop-down boxes appear. @en
language: en
publisher: Natural History Museum
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://www.nhm.ac.uk/research-curation/research/projects/hostplants/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7088
theme: T0019
status: Active @en
status: 稼動中

nbdc00287
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HS3D

nbdc00287
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HS3D

HS3D
type: Dataset
alternative: Homo Sapiens Splice Sites Dataset
description: GenBankから抽出したヒトのエキソン、イントロン、スプライス領域のデータセットを提供しています。
description: HS3D (Homo Sapiens Splice Sites Dataset) version 1.2 is a database that contains information on human exon, intron and splice regions. Data on 4,523 exons and 3,802 introns is provided. The format of the data is explained. The database may be downloaded entirely in a series of 12 files provided for this purpose. @en
language: en
publisher: Universita degli Studi del Sannio di Benevento
  type: Organization
  address country: イタリア
  address country: Italy @en
landing page: http://www.sci.unisannio.it/docenti/rampone/
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00288
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Human Genome Segmental Duplication Database

nbdc00288
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Human Genome Segmental Duplication Database

Human Genome Segmental Duplication Database
type: Dataset
description: ヒトゲノムの重複断片のデータベース。
language: en
publisher: The Centre for Applied Genomics
  type: Organization
  address country: カナダ
  address country: Canada @en
landing page: http://projects.tcag.ca/humandup/
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00289
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: IARC TP53 Database

nbdc00289
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: IARC TP53 Database

IARC TP53 Database
type: Dataset
description: IARC TP53 Database is a database about mutations, genetic diseases and anotations on human p53. It contains information such as gene variations, somatic mutations, germline mutations, status in cell lines, mouse models, exon/intron distributions, codons, and mutation type. Datasets such as the functional activity of somatic and missense mutations within cancer tissue are also available. The data are collected from peer-reviewed literature and mutation data repositories. @en
description: p53の変異、遺伝病、その解析結果のデータベースです。
language: en
publisher: International Agency for Research on Cancer
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9016527
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10447253
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10084119
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12007217
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399837
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7937055
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8594564
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17311302
distribution: Distribution
  description: Manual.aspx
  rights: Disclaimer.aspx
  access URL: http://p53.iarc.fr/DownloadDataset.aspx
landing page: http://p53.iarc.fr/
theme: T0014
theme: T0015
theme: T0001
theme: T0007
theme: T0013
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0021
status: Active @en
status: 稼動中

nbdc00290
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-18
source: Integbio Database Catalog
primary topic: IMGT/LIGM-DB

nbdc00290
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-18
source: Integbio Database Catalog
primary topic: IMGT/LIGM-DB

IMGT/LIGM-DB
type: Dataset
alternative: IMGT, the international ImMunoGeneTics information system/LIGM-DB
description: ヒトおよびその他の脊椎動物の免疫グロブリン、T細胞受容体に関するアノテーションが付与された配列のデータベースです。
description: This is a sequence database with annotations on immunoglobulins and T-cell receptors of humans and other vertebrates. Each record includes sequences, details of identification and classification of the sequence, source citation, and level of annotation (manual or not). Searches can be performed by species, gene type or gene function. @en
language: en
publisher: CNRS (The National Center for Scientific Research)
  type: Organization
  address country: France @en
  address country: フランス
publisher: Montpellier University, Montpellier
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18978023
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381979
landing page: http://www.imgt.org/ligmdb/
theme: T0021
theme: T0001
status: Active @en
status: 稼動中

nbdc00291
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: INE 稲

nbdc00291
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-08
source: Integbio Database Catalog
primary topic: INE 稲

INE 稲
type: Dataset
title: INE @en
alternative: INtegrated Rice Genome Explorer : INE @en
alternative: INtegrated Rice Genome Explorer
description: イネの染色体の連鎖地図、物理地図、EST Mapを掲載しています。 なお、本サイトは運用を停止し、データはWhoGA (http://integbio.jp/dbcatalog/record/nbdc00736) から提供していましたが、WhoGAは2013年3月31日をもって停止いたしました。今後はRAP-DB (http://integbio.jp/dbcatalog/record/nbdc00182) をご利用いただきますよう、よろしくお願いいたします。
language: en
publisher: 国立研究開発法人農業生物資源研究所
  type: Organization
  label: National Institute of Agrobiological Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592192
landing page: http://ine.dna.affrc.go.jp/giot/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0001
theme: T0002
status: 運用終了
status: Active @en

nbdc00295
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Kyushu University Rice Database

Kyushu University Rice Database
type: Dataset
description: 九州大学大学院農学研究院附属遺伝子資源開発研究センター植物遺伝子開発分野が収集および保存しているイネ品種・系統のデータベース。国内外の品種系統(HO系統、1,398 系統)、FAO国際共同研究供試品種(IBP系統、276 系統)、国内外の陸稲品種(UP系統、342系統)を含んでいます。
language: ja
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/rice/rice-kyushu/htdocs/main.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0014
theme: T0017
status: 稼動中

nbdc00296
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: LOCATE

nbdc00296
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: LOCATE

LOCATE
type: Dataset
alternative: subcellular localization database
description: LOCATE is a database containing information on how and where in the cell and its membrane proteins are located and on the organization of the cell membrane. This information can reveal the functional role a specific protein fulfills in a cell. The content of this database was collected by computational methods, immunofluorescence-based assays and by manually screening more than 1,700 publications. The proteins studied were obtained from the RIKEN FANTOM4 mouse and human protein sequence set. This database contains information on 58,128 mouse proteins and 64,637 human proteins. A keyword search is available whereby data can be retrieved by entering a protein's ID, description, domain ID, domain name or location. An Advanced search option is also provided where a combination of search criteria may be entered. @en
description: 理研のFANTOM3のタンパク質配列セットに対して、膜組織や細胞内局在性に関する情報を人の手で付加したデータのデータベース。膜組織は MemO pipeline を用いて予測しており、細胞内局在は免疫蛍光検査測定法と人の手による文献の調査によって決定しています。
language: en
publisher: The University of Queensland
  type: Organization
  address country: Austria @en
  address country: オーストリア
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17986452
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381849
distribution: Distribution
  access URL: http://locate.imb.uq.edu.au/downloads.shtml
landing page: http://locate.imb.uq.edu.au/
theme: T0021
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
status: Active @en
status: 稼動中

nbdc00297
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MAEDA

nbdc00297
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: MAEDA

MAEDA
type: Dataset
alternative: Micro Array Expression DAta search
description: シロイヌナズナの遺伝子発現データベース。 RARGE- RIKEN Arabidopsis Genome Encyclopedia：http://rarge.gsc.riken.jp/index.html のページで提供されています。
description: MAEDA is a database of Arabidopsis gene expression profiles that can be searched by gene ID. Expression in normal and stress conditions was measured by cDNA microarrays. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12164808
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12444421
landing page: http://rarge.psc.riken.jp/microarray/microarray.pl
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0024
theme: T0002
status: 休止
status: Inactive @en

nbdc00298
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MassBank

nbdc00298
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-05-16
source: Integbio Database Catalog
primary topic: MassBank

MassBank
type: Dataset
alternative: High Resolution Mass Spectral Database
description: 代謝物質（基礎代謝、植物二次代謝標準物質）を高分解能質量分析によって測定したマススペクトルを収集したデータベース。国内外12機関のデータをまとめて検索、閲覧が可能であり、マニュアルが充実しています。
description: MassBank is a high-resolution mass spectral database that involves the JST-BIRD project, and was developed by the Institute for Advanced Biosciences, Keio University (IAB) Analytical Chemistry Group, and the RIKEN Plant Science Center (PSC) Metabolomics Research Group. MassBank is used to search chemical compounds that have been detected by mass spectrometry for chemical identification, structure detail, similar spectrum search, etc. MassBank was recognized as the official mass spectral database of the Mass Spectrometry Society of Japan in 2008. It also contains the results of the NEDO project. @en
language: ja
language: en
publisher: MassBank プロジェクト
  type: Organization
  label: MassBank Project @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20623627
distribution: Distribution
  description: MassBankRecord en.pdf
  description: DataDownload ja.pdf
  rights: download.html
  access URL: http://www.massbank.jp/ja/download.html
  access URL: http://www.massbank.jp/en/download.html
landing page: http://www.massbank.jp/index.html?lang=en
landing page: http://www.massbank.jp/
theme: T0023
theme: T0010
status: Active @en
status: 稼動中

nbdc00299
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-06
source: Integbio Database Catalog
primary topic: MnM

nbdc00299
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-06
source: Integbio Database Catalog
primary topic: MnM

MnM
type: Dataset
alternative: Minimotif Miner (Application to search for short sequence motifs in proteins)
description: MnM is a database for short sequence motifs in protein. It provides information of short contiguous peptide motifs that have a known function in at least one other protein (Minimotifs). Minimotif functions include posttranslational modification of the minimotifs, binding to a target protein or molecule, and protein trafficking. Users can search motifs by protein names, sequences and various IDs. @en
description: タンパク質内に存在する短い近接するペプチドモチーフに関するデータベースです。Minimotifとは少なくとも２つ以上のタンパク質で機能が知られたもので、翻訳語修飾、タンパク質やその他分子への結合、タンパク質輸送等に働いています。タンパク質名や配列のほか、UniProt等種々のIDによるモチーフの検索が可能です。
language: en
publisher: University of Connecticut
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
publisher: University of Nevada
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16489333
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18978024
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22146221
landing page: http://cse-mnm.engr.uconn.edu:8080/MNM/SMSSearchServlet
theme: T0021
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00300
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Mouse Genetic Resources

nbdc00300
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-16
source: Integbio Database Catalog
primary topic: Mouse Genetic Resources

Mouse Genetic Resources
type: Dataset
description: Mouse genetic Resources is a database of available mouse strains established in the Mammalian genetics Laboratory, National Institute of genetics (NIG). This database stocks information on resources of laboratory strains, congenic strains, recombinant strains, mutant stocks, wild mouse-derived strains and consomic strains. Each entry contains strain information (a strain name, gene, etc), history of a strain, stock condition and a type of a resource (frozen or live). Some entries include images of adult mice. Users can search available strains by keywords from those items. @en
description: 国立遺伝学研究所系統生物研究センター哺乳動物遺伝研究室において維持されているマウス系統に関する情報、及びそれらのマウス系統を用いた遺伝解析に必要な基礎情報を提供しています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 系統生物研究センター・哺乳動物遺伝研究室
  type: Organization
  label: Mammalian Genetics Laboratory, National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/mouse/nig/locale/change/?lang=ja
landing page: http://www.shigen.nig.ac.jp/mouse/nig/locale/change/?lang=en
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
status: Active @en
status: 稼動中

nbdc00301
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: Mouse SAGE Site

Mouse SAGE Site
type: Dataset
description: マウスの様々な組織や細胞株から生成された SAGE (Serial Analysis of gene expression) ライブラリのデータベース。
publisher: Institute of Molecular Genetics of the ASCR, v.v.i.
  type: Organization
  address country: チェコ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681462
landing page: http://mouse.img.cas.cz/sage/
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
status: 休止

nbdc00302
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: Myc Cancer Gene

nbdc00302
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: Myc Cancer Gene

Myc Cancer Gene
type: Dataset
description: Myc標的遺伝子およびMycと癌の関連をまとめたデータベースです。
language: en
publisher: Johns Hopkins University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14519204
landing page: http://www.myccancergene.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00303
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: NONCODE

nbdc00303
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: NONCODE

NONCODE
type: Dataset
description: NONCODE is a comprehensive database of noncoding RNAs, excluding tRNAs and rRNAs, from an extensive number of biological organisms, from eukaryotes to viroids. This repository contains 411,554 sequences from 1,239 organisms of which 73,372 are lncRNAs. Annotated information on the expression profiles of 27,408 lncRNAs and the potential functions of 1,635 lncRNAs is included. When the database was created, the references were all manually consulted to confirm the sequences. A new classification system is introduced, based on the cellular process in which the sequence takes part. A keyword search option and Blast search option is available. @en
description: あらゆる種類の非コードRNA（noncoding RNAs）のデータベースです（tRNAとrRNAは除く）。公開された文献やデータベースからlncRNAおよびアノテーション情報を検索し、Ensembl、RefSeq、lncRNAdb、GENCODEの最新情報と統合して、lncRNAの位置、塩基配列、RNASeqによる発現プロファイル、可視化した構造などを収録しています。機能、疾患、生物種間での保存状況による絞り込みや、BLAST検索、ゲノムブラウザの利用が可能です。
language: en
publisher: Bioinformatics Research Group, Institute of Computing Technology, Chinese Academy of Sciences.
  type: Organization
  address country: 中国
  address country: China @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22135294
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18000000
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608158
distribution: Distribution
  rights: download.php
  access URL: http://www.noncode.org/download.php
landing page: http://www.noncode.org
theme: T0021
theme: T0015
theme: T0024
theme: T0022
theme: T0006
status: Active @en
status: 稼動中

nbdc00304
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-08-25
source: Integbio Database Catalog
primary topic: OBIS

nbdc00304
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-08-25
source: Integbio Database Catalog
primary topic: OBIS

OBIS
type: Dataset
alternative: Ocean Biogeographic Information System
alternative: The Ocean Biogeographic information System @en
description: OBIS is a integrated database of marine biogeographic data from all over the world. It contains information on where and when marine species have been recorded. Users are able to search the datasets by species name, higher taxonomic level, geographic area, depth and time; and then map and find environmental data related to the locations. Furthermore, users can choose data type and data format to download data. @en
description: 様々な情報源（データベース）の海洋学関連のデータを評価・統合し、多数の海洋生物に関するデータを閲覧、検索できるサイトです。
language: en
publisher: Census of Marine Life
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.iobis.org
theme: T0014
status: Active @en
status: 稼動中

nbdc00305
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: OBO

nbdc00305
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: OBO

OBO
type: Dataset
alternative: Open Biomedical Ontologies @en
description: The OBO Foundry provides a catalog of ontologies used in medicine or life sciences. Users can find details of each ontology in the list. Each ontology and the list are downloadable as owl file, and as YAML, JSON-LD and RDF/Turtle, respectively. @en
description: 医学・生物学分野で使用される語彙を収集し、構造化しています。
language: en
publisher: Berkeley Bioinformatics Open-source Project
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17321117
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16435295
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16549013
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16442850
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16564748
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16964349
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16360342
distribution: Distribution
  access URL: http://www.berkeleybop.org/ontologies/
landing page: http://www.obofoundry.org/
theme: T0019
status: Active @en
status: 稼動中

nbdc00306
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Okdb

nbdc00306
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Okdb

Okdb
type: Dataset
alternative: Ovarian Kaleidoscope Database @en
description: 卵巣内で発現する遺伝子の生物学的機能、発現パターン、発現規則に関する情報を集めたデータベース。
description: Okdb is a database of genes related to the biological function, expression patterns, and regulation of genes expressed in the ovaries. Information such as gene function, expression pattern, mutations, and phenotype can be found for humans, mouse, rat, bovine, ovine, porcine, D. melanogaster, and C. elegans. Searches can be performed by species, expression site, or function, etc. @en
language: en
publisher: Stanford University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22441797
landing page: http://ovary.stanford.edu/
theme: T0024
theme: T0002
status: Active @en
status: 稼動中

nbdc00307
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: OWL

nbdc00307
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: OWL

OWL
type: Dataset
description: OWL Version 31.1 is a database comprised of the results of a comparative study of 4 sources of sequence information. These sources are SWISS-PROT, PIR, GenBank and NRL-3D. Redundancies of sequences have been avoided at all cost, even by eliminating sequences that display trivial differences from other sequences that are already present. OWL is therefore a comparatively small repository, simplifying the process of similarity checks. This version of the repository contains 279,796 entries and 89,624,288 residues. The database can be searched by means of entering an accession number, a database code, a sequence or by making use of the provided keyword search option. @en
description: Swiss-Prot, PIR, GenBank（翻訳したもの）, NRL_3Dのデータをもとにして、重複がないように再構成したものです。
language: en
publisher: University of Manchester Bioinformatics Education and Research
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://www.bioinf.manchester.ac.uk/dbbrowser/OWL/index.php
theme: T0021
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00308
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PDBsum

nbdc00308
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PDBsum

PDBsum
type: Dataset
description: PDBsum is a database that contains the annotated 3-dimensional structures of all the proteins in the Protein Data Bank (PDB). The diagrams indicate the protein chains, ligands, DNA and the metal ions present in the protein structures and also how these molecules interact with each other. This database contains 92,037 ProteinDataBase entries. PDB code, text and sequence search options are available. Data files can also be downloaded from the site. @en
description: PDB (Protein Data Bank)に登録されているタンパク質の巨大分子構造をひと目で概観できる画像データベース。タンパク質の分子構造や相互作用を図で見ることができます。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125097
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9433130
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608193
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18996896
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17384425
distribution: Distribution
  description: http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?doc=TRUE&template=downloads.html&pdbcode=n/a
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?doc=TRUE&template=downloads.html&pdbcode=n/a
landing page: http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/
theme: T0022
theme: T0029
theme: T0007
status: Active @en
status: 稼動中

nbdc00309
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PlantsT

nbdc00309
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PlantsT

PlantsT
type: Dataset
alternative: Functional Genomics of Plant Transporters
description: This database contains information on plant transporters. It provides information about proteins (name, synonyms, keywords, description, sequence, length, mass, features, etc.), RNA and DNA sequences, citations. @en
description: 60種類以上の植物の輸送タンパク質、トランスポーター遺伝子の情報を集めたデータベース。タンパク質の情報（名前、同義語、キーワード、特性、配列、長さ、重量、遺伝子発現データ等）のほかに、タンパク質ファミリーのアライメント、系統樹などを見ることができます。
language: en
publisher: Purdue University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://plantst.genomics.purdue.edu/
theme: T0021
theme: T0028
theme: T0007
status: 休止
status: Inactive @en

nbdc00310
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-04-19
source: Integbio Database Catalog
primary topic: Pmda

Pmda
type: Dataset
alternative: Pharmaceuticals and Medical Devices Agency (医薬品医療機器情報提供ホームページ)
description: 医薬品・医療機器等の安全な使用に役立てるため、医薬品関連情報、医療機器関連情報、医療用医薬品および一般医薬品添付文書情報、安全情報を提供しています。
language: ja
publisher: 独立行政法人医薬品医療機器総合機構
  type: Organization
  address country: 日本
landing page: http://www.pmda.go.jp/
theme: T0015
theme: T0030
status: 稼動中

nbdc00311
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-08-27
source: Integbio Database Catalog
primary topic: UMIN 中毒データベース検索システム

UMIN 中毒データベース検索システム
type: Dataset
description: UMIN (大学病院医療情報ネットワーク) が運営する中毒に関連した情報データベースです。UMINのサイトは医学・医療・生物学系の研究者・専門家及び大学病院の教職員・学生を対象としており、一般の方向けにはなっておりません。検索条件を入力する前にヘッダーの「中毒情報」や「中毒情報検索（商品分類一覧）」を参照し、原因商品の分類やタイトルを確認すると効率よく検索ができます。医薬品に関する情報だけに留まらず、家庭用品に至るまで身近なものに対し広範囲に網羅しています。
language: ja
publisher: 大学病院医療情報ネットワーク
  type: Organization
  address country: 日本
landing page: https://center6.umin.ac.jp/cgi-open-bin/hanyou/lookup/search.cgi?parm=POISON
theme: T0015
theme: T0030
status: 稼動中

nbdc00312
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PRIDE

nbdc00312
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PRIDE

PRIDE
type: Dataset
alternative: PRoteomics IDEntifications database
description: プロテオームデータの公的レポジトリ。質量分析ペプチドおよび蛋白質の同定データの公的レポジトリ。
description: This is a public repository for proteomics data, containing identification data on mass spectrometric peptides and proteins, and post-translational modifications, in which data are supported by spectral evidence. PRIDE is a core member of the ProteomeXchange (PX) consortium. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19906717
distribution: Distribution
  rights: terms-of-use
  access URL: ftp://ftp.pride.ebi.ac.uk/pride/data/archive
landing page: http://www.ebi.ac.uk/pride/
theme: T0007
status: Active @en
status: 稼動中

nbdc00313
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PKR

nbdc00313
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PKR

PKR
type: Dataset
alternative: Protein Kinase Resource
description: タンパク質キナーゼの様々な情報（配列、立体構造、アノテーション等）を統合し、Webインタフェースからそれらのデータを閲覧、分析できるシステムです。
description: This system integrates information on protein kinases (sequences, conformations, annotations) and allows users to browse and analyze the data through a web interface. Searches can be performed by structure, BLAST motif, or citation. Kinome trees can also be viewed here. @en
language: en
publisher: San Diego Supercomputer Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www0.nih.go.jp/mirror/Kinases/pk_home.html
theme: T0021
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00314
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RAFL cDNAs

nbdc00314
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RAFL cDNAs

RAFL cDNAs
type: Dataset
alternative: RIKEN Arabidopsis Full-length cDNA
description: シロイヌナズナの完全長cDNA情報のデータベース。シロイヌナズナ完全長cDNAの解析を行い、機能注釈を付ける作業を進めた成果を公開しています。155,144の完全長 cDNAsの3'末端ESTsを、14,668の非冗長のcDNAグループのクラスタに分類し、また、14,034種のシロイヌナズナ遺伝子について、5'末端の配列データを得、制御領域（プロモーター）データベースを構築したものです。
description: This is a database of Arabidopsis cDNA sequence information that can be searched by gene description, locus, or cDNA clone and contains available mutant information for each gene, in addition to sequence information. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://rarge.psc.riken.jp/cdna/cdna.pl
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0002
status: 休止
status: Inactive @en

nbdc00315
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RED (アーカイブ)

nbdc00315
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RED (アーカイブ)

RED (アーカイブ)
type: Dataset
title: RED (Archive) @en
alternative: Rice Expression Database @en
description: The Rice Expression Database (RED) is a database that aggregates the gene expression data that has been analyzed using 8987EST array in the Microarray Project that was underway as part of the Rice Genome Project. RED holds raw and normalized data from expression profiles obtained by the Rice Microarray Project and other research groups. The original site (http: //red.dna.affrc.go.jp/cgi-bin/sogo.cgi?sid=&pj=0&lang=ja&class=852) has been closed. The Rice Expression Database is available from LSDB archive site. @en
description: The Rice Expression Database（RED）は、イネゲノムプロジェクトの一環として進められたマイクロアレイプロジェクトにおいて、8987ESTアレイを用いて解析さ れた遺伝子発現データを集約したデータベースです。REDは、イネマイクロアレイプロジェクトと他の研究グループによる実験で得られた発現プロファイルからの生データと正規化されたデータを保持しています。 国立研究開発法人 農業・食品産業技術総合研究機構によるオリジナルサイト（http: //red.dna.affrc.go.jp/RED/）の運用は終了致しました。引き続き生命科学系データベースアーカイブからThe Rice Expression Databaseをご利用いただけます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README e.html
  description: README.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/red/download.html
  access URL: https://dbarchive.biosciencedbc.jp/en/red/download.html
landing page: https://dbarchive.biosciencedbc.jp/en/red/desc.html
landing page: https://dbarchive.biosciencedbc.jp/jp/red/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0024
theme: T0002
status: Active @en
status: 稼動中

nbdc00316
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: REMIB

nbdc00316
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-15
source: Integbio Database Catalog
primary topic: REMIB

REMIB
type: Dataset
alternative: The World Biodiversity Information Network (REMIB) @en
description: REMIB (The World Biodiversity Information Network) is a database that contains and shares information on biological diversity from more of 200 countries, with 5,763,632 records. To browse the database, a set of regulations need to be read and agreed to, then a key search option is made available. @en
description: 生物学的多様性に関する情報を持つ機関・データベースをネットワーク化し、ネットワークに参加しているデータベースの情報に一元的にアクセス・検索することができるシステムです。
language: en
publisher: Mexican National Commission on Biodiversity
  type: Organization
  address country: Mexico @en
  address country: メキシコ
landing page: http://www.conabio.gob.mx/remib_ingles/doctos/remib_ing.html
theme: T0031
theme: T0027
status: Active @en
status: 稼動中

nbdc00317
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Repbase

nbdc00317
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Repbase

Repbase
type: Dataset
description: This is a database for repetitive DNA. It is comprised of databases of model sequences for the repetitive DNA (Repbase Update, RU) and electronic journals (Repbase Reports, RR). RU is a collection of sequences for repetitive DNA obtained from different eukaryotes, and users can search by the type of repetitive DNA, internal elements, and species. RR contains literature used to present the sequences collected in RU. @en
description: 異なる真核生物から得られた反復性DNAを表す原型の配列のデータベースであるRepbase Update(RU) と、電子ジャーナルRepbase Reports(RR)のサービスを提供しています。
language: en
publisher: Genetic Information Research Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10973072
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9666329
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16093699
distribution: Distribution
  rights: register.php
  access URL: http://www.girinst.org/downloads/
landing page: http://www.girinst.org/repbase/
theme: T0021
theme: T0005
theme: T0030
status: Active @en
status: 稼動中

nbdc00318
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RGP

nbdc00318
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: RGP

RGP
type: Dataset
alternative: The Rice Genome Research Program @en
description: イネゲノムの高密度分子遺伝地図、酵母人工染色体（YAC）の整列化地図、65000個のEST塩基配列情報、及び、これらESTをYAC整列化地図上に位置づけた発現遺伝子地図が公開されています。
description: This is a web site of Rice Genome Research Program in Japan. It contains high-density molecular genetic maps, yeast artificial chromosome (YAC) sequence maps, 65000 EST base sequence information, and gene expression maps annotated onto YAC sequence maps. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://rgp.dna.affrc.go.jp/E/
landing page: http://rgp.dna.affrc.go.jp/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0024
theme: T0001
theme: T0002
status: Active @en
status: 稼動中

nbdc00319
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RIKEN BIORESOURCE CENTER EXPERIMENTAL ANIMAL DIVISION

nbdc00319
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RIKEN BIORESOURCE CENTER EXPERIMENTAL ANIMAL DIVISION

RIKEN BIORESOURCE CENTER EXPERIMENTAL ANIMAL DIVISION
type: Dataset
title: RIKEN BioResource Center Experimental Animal Division @en
description: バイオリソースセンターにおいて提供を行っている実験動物（マウス）の系統検索等のデータベースのポータルサイト。
description: RIKEN BioResource Center Experimental Animal Division is a repository of information on mouse resources maintained by RIKEN BioResource Center (RIKEN BRC). This repository contains genetically-engineered strains, ENU mutants, inbred and wild-derived strains developed mainly in Japan. This repository provides a database of mouse phenotypes; Pheno-Pub, and protocols used in mouse experiments such as genotyping PCR, FACS analysis, etc. Users can search available resources from Pheno-Pub, as well as by keywords. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.brc.riken.jp/lab/animal/en/
landing page: http://www.brc.riken.jp/lab/animal/
theme: T0014
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
status: Active @en
status: 稼動中

nbdc00320
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-11-09
source: Integbio Database Catalog
primary topic: 老化促進モデルマウス (SAM)研究協議会

nbdc00320
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-11-09
source: Integbio Database Catalog
primary topic: 老化促進モデルマウス (SAM)研究協議会

老化促進モデルマウス (SAM)研究協議会
type: Dataset
title: The Council for SAM Research @en
description: 老化促進モデルマウス（SAM）に関する情報を集めたサイトです。SAMマウスのマイクロサテライト一覧やSAM命名法、分与に関する情報などが掲載されています。
description: This site is about The Council for SAM Research. It supplies senescence-accelerated mouse (SAM) for members of this council. The information of SAM microsatellite marker is also supplied in this site. @en
language: ja
language: en
publisher: 老化促進モデルマウス（SAM）研究協議会
  type: Organization
  label: The Council for SAM Research @en
  address country: Japan @en
  address country: 日本
landing page: http://www.samrc.jp/firste.html
landing page: http://www.samrc.jp
theme: T0014
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
theme: T0003
status: Active @en
status: 稼動中

nbdc00321
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SEER

nbdc00321
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SEER

SEER
type: Dataset
alternative: Surveillance Epidemiology and End Results @en
description: 1973年からアメリカでの癌の罹患率や生存率、死亡率等、癌に関する統計データを収集しているサイト。30種類以上の癌の情報を集めており、アメリカの人口の約26パーセントをカバーしています。300万人以上の癌患者の腫瘍診断や治療法に関する情報も閲覧することができます。
description: This site collects data of cancers, such as morbidity and survival rate, for over 30 types of cancer in the US since 1973. It includes statistics data and tools to visualize those statistic data, and research data of incidence and population related to age, sex, race, year of diagnosis, and geographic areas. A signature on Research Data Agreement is necessary for use research data. @en
language: en
publisher: National Cancer Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: analysis
  rights: access.html
  access URL: http://seer.cancer.gov/data/access.html
landing page: http://seer.cancer.gov/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00322
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SHIGEN

nbdc00322
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: SHIGEN

SHIGEN
type: Dataset
alternative: SHared Information of GENetic resources @en
alternative: Shared Information of GENetic Resources
description: 遺伝資源情報の提供者と利用者が一緒に作り上げる情報アーカイブ。SHIGENプロジェクトは <1> 実験研究に必要な遺伝資源材料の情報公開サイトを網羅的に調べて提供する(WGR) <2> 国内の利用可能な資源に関しては、関連する様々な情報を含めた統合データベースを構築して利用者の便宜を図る <3> 日本の生物遺伝資源委員会の活動に関する最新の情報を提供する (GRC) <4> 国内の遺伝資源に関するデータベース構築を支援する(Databases) などを目的として、国立遺伝学研究所・生物遺伝資源情報センター(三島市)で推進しています。ここでいう「遺伝資源」とは、遺伝物質を含み、増殖、保存、分譲が可能な実験材料(生物個体、 組織、細胞、DNA、笂など)をさします。本センターは国内の遺伝資源情報の中心を担うべく、1998年に設立されました。また2002年7月に発足したナショナルバイオリソースプロジェクト(NBRP)における情報中核機関としても機能しています。
description: SHIGEN is a portal site of bioresource information in Japan maintained by National Institute of genetics (NIG). SHIGEN provides the list of databases constructed at NIG, information sites for bioresources (NBRP; National BioResource Project, WGR; Worldwide genetic Resources and JGR; Japan genetic Resources), monthly newsletters (BioResource now!) and bioinformatics tools. Users can search resource information by keywords through those 3 information sites. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/index.htm
landing page: http://www.shigen.nig.ac.jp/indexja.htm
theme: T0031
theme: T0017
status: Active @en
status: 稼動中

nbdc00323
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: snoRNABase

nbdc00323
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: snoRNABase

snoRNABase
type: Dataset
description: ヒトのsnoRNA（small nucleolar RNA：核小体低分子RNA）に関する包括的なデータベース。
description: SnoRNABase is an extensive database of human small nucleolar RNAs (snoRNAs) constructed with the invaluable assistance of Laboratoire de Biologie Mol?culaire Eucaryote (LBME) and Jean-Pierre Bachellerie in particular. This repository provides the sequences of both snoRNA classes, namely C/D box snoRNAs and H/ACA box snoRNAs. In version 2 of the database each class contains information on a set of four proteins. In the updated version 3 of the database different sequences are used and the nucleotides are numbered differently. Keyword search and Blast search options are available. @en
language: en
publisher: Laboratoire de Biologie Moleculaire des Eucaryotes
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381836
landing page: http://www-snorna.biotoul.fr/
theme: T0021
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00324
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-28
source: Integbio Database Catalog
primary topic: Springer Nature Experiments

nbdc00324
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-28
source: Integbio Database Catalog
primary topic: Springer Nature Experiments

Springer Nature Experiments
type: Dataset
description: This is a database of protocols, including experimental procedures and important points, used primarily in the life sciences and medical sciences. Protocols can be searched by text or field of research. Video-based protocols can also be found. @en
description: ライフサイエンスや医学の研究などに使われる実験の手順やプロトコルに関するデータベースです。Nature Protocols、Nature Methods、Protocol Exchange、SpringerProtocolsの記事について、分子操作、顕微鏡技術、細胞や組織の培養、スペクトル分析という４つの分野ごとのブラウズや、プロトコル、技術、生物種などによるテキスト検索が可能です。
language: en
publisher: Springer Nature
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: https://experiments.springernature.com
theme: T0018
theme: T0030
status: Active @en
status: 稼動中

nbdc00325
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-05-09
source: Integbio Database Catalog
primary topic: SRS

nbdc00325
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: SRS

SRS
type: Dataset
alternative: Sequence Retrieval System
description: SRS is a vast collection of linked genomic databases covering a wide variety of biological topics. These databanks can be searched individually or in combination to obtain specific information needed. A number of analysis tools are available e.g. alignment, display, edit, nucleic, protein and phylogeny tools, allowing the researcher access to a vast amount of genomic information. Text and List search options are provided wherein the data sought can be requested as a single ID or as a list of sequence IDs. @en
description: 生物学に関するサーチエンジン。ライフサイエンスインフォマティックスの統合プラットフォームとして、400以上の世界各地のデータベースをリンクし、独自のIndex生成により一度の検索で全ての関連情報を入手することが可能です。 European Bioinformatics InstituteによるSRSの運用は終了しました。SRSから利用可能だったデータバンクやツールにアクセスするための情報が、EMBL-EBIのサイト （http://srs.ebi.ac.uk） に掲載されています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11847095
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15215339
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8743681
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12176845
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8435768
landing page: http://srs.ebi.ac.uk/
theme: T0031
status: 運用終了
status: Closed @en

nbdc00326
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-05-09
source: Integbio Database Catalog
primary topic: SMD

nbdc00326
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-05-09
source: Integbio Database Catalog
primary topic: SMD

SMD
type: Dataset
alternative: Stanford Microarray database
description: マイクロアレイの遺伝子発現データをデータベース化しています。 Stanford UniversityによるSMDの運用は終了しました。SMDのデータを登録している公共のレポジトリの情報が、お知らせのページ （http://smd.princeton.edu） に掲載されています。
language: en
publisher: Stanford University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18953035
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17182626
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125075
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608265
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519956
landing page: http://smd.stanford.edu/
theme: T0024
theme: T0002
status: 運用終了
status: Closed @en

nbdc00327
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: HPV Sequence Database

nbdc00327
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: HPV Sequence Database

HPV Sequence Database
type: Dataset
description: This database contains molecular sequence information on papillomaviruses and related cellular proteins. Maintenance on the original database has stopped and the data can be viewed as an archive. @en
description: ヒトパピローマウイルスのデータベースです。遺伝子の詳細データや配列、系統樹、パスウェイなどを収録しています。現在、オリジナルのデータベースは運用を終了し、アーカイブとしてデータが見られるようになっています。
language: en
publisher: Los Alamos National Laboratory
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://pave.niaid.nih.gov/lanl-archives/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/485
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1311
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/730
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10345
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/160
theme: T0026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/37296
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10298
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10359
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/813
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2130
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/83558
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10310
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2097
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10566
status: Active @en
status: 稼動中

nbdc00328
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: OSF online

nbdc00328
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: OSF online

OSF online
type: Dataset
alternative: Orthoptera Species File Online
description: The Orthoptera Species File is a database that provides information on the classification of living and fossilized Orthoptera (grass-hoppers etc.) This database contains 43,070 scientific names, 25,920 valid species, 196,300 quotations from 15,000 references, 480 sound recordings, 76,700 images and 88,500 specimen records. A simple name search and an advanced search option are available. @en
description: 世界中に生息するキリギリス上科の昆虫のデータベース。キリギリス上科に属する昆虫の説明、分布、画像等を見ることができます。
language: en
publisher: Illinois Natural History Survey
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
publisher: Museum of Comparative Zoology
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://orthoptera.speciesfile.org/HomePage.aspx
theme: T0014
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6993
theme: T0030
status: Active @en
status: 稼動中

nbdc00329
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: The Chromosome 7 Annotation Project

nbdc00329
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Chromosome 7 Annotation Project

The Chromosome 7 Annotation Project
type: Dataset
description: ヒト7番染色体に関するデータベース。ヒト7番染色体に総合的な説明を作成することを目的としています。
description: The Chromosome 7 Annotation Project is a database that contains descriptive information of human chromosome 7. It is fully sequenced and annotated with medically relevant data. Chromosome 7 houses genes related to more than 360 diseases and disorders e.g. cystic fibrosis, Russell-Silver syndrome and Williams-Beuren syndrome. It is also believed that chromosome 7 carries loci for a number of neuropsychiatric diseases e.g. autism, alcoholism, bipolar affective disorder, panic disorder and schizophrenia. Although it has not yet been identified, cytogenetic evidence suggests that chromosome 7 carries a gene that causes cancer. The database provides access to a table of clinical breakpoints in chromosome 7 as well as a comprehensive list of other tables containing genetic information about this chromosome. Keyword and Blast search options are available. Even the families of diseased patients may search the database for information by selecting a link called 'Family Village'. @en
language: en
publisher: The Centre for Applied Genomics
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12690205
distribution: Distribution
  access URL: http://www.chr7.org/download.asp
landing page: http://www.chr7.org/
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00330
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-02-26
source: Integbio Database Catalog
primary topic: DRAFT SEQUENCE OF FUGU GENOME ASSEMBLY RELEASE 1, 2, 3 and 4

nbdc00330
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-26
source: Integbio Database Catalog
primary topic: DRAFT SEQUENCE OF FUGU GENOME ASSEMBLY RELEASE 1, 2, 3 and 4

DRAFT SEQUENCE OF FUGU GENOME ASSEMBLY RELEASE 1, 2, 3 and 4
type: Dataset
description: フグのDNA配列、EST配列を公開しています。
description: FUGU GENOME ASSEMBLY is a repository that offers genomic data of the Fugu, a puffer fish that is eaten as a Japanese delicacy. The database contains information on BACs, cosmids, ESTs and contigs arranged in four separate releases. The total size of the Fugu genome, including repeats, is around 365 Mbases. A keyword search is available. Additionally, a Blast search option is provided by which a known sequence can be compared to the Fugu Genome sequence. Datasets can be downloaded. @en
language: en
publisher: Queen Mary, University of London
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: https://fugu.crick.ac.uk/News/FuguWebsite_02_04_03.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/31033
theme: T0001
theme: T0002
status: 休止
status: Inactive @en

nbdc00331
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-18
source: Integbio Database Catalog
primary topic: The New York Botanical Garden

nbdc00331
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-18
source: Integbio Database Catalog
primary topic: The New York Botanical Garden

The New York Botanical Garden
type: Dataset
description: This is a homepage of The New York Botanical Garden that is engaged in plant research and conservation. It provides data of books and articles about plants in the world, and information of plants with photos and commentaries, etc. @en
description: The New York Botanical Garden が収集する植物の研究や保全に関する情報のうち、ニューヨークにある植物園、研究所、植物研究に関する記事や本のデータ、植物標本を集めたサイトです。また、DNA Bankの情報やDNA解析用に開発されたオープンソースソフトウェアの情報も収録されています。植物標本は標本画像と共に種名、採集者、保管機関の情報が収録されており、採集地を含めた検索が可能です。
language: en
publisher: The New York Botanical Garden
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: https://www.nybg.org/plant-research-and-conservation/collections-resources/
theme: T0014
theme: T0029
theme: T0019
theme: T0030
status: Active @en
status: 稼動中

nbdc00332
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PomBase

nbdc00332
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PomBase

PomBase
type: Dataset
description: PomBase is a scientific resource for genomic information on the fission yeast Schizosaccharomyces pombe. This database offers extensive information on the structural and functional aspects of the yeast genome. The sequenced size of the genome, not including rRNA is 12.57Mbp. The nucleus of the yeast cell contains 3 chromosomes of which the size ranges from 2.45Mbp to 5.58Mbp There are 5124 protein coding genes that have been counted and they are packed on the DNA molecules at a density of 554.49 genes per Mb. A comprehensive number of datasets are available for download. Search options available are a Simple keyword search, an Advanced search, a gene list search, a Blast search and a Genome Browser. @en
description: Schizosaccharomyces pombeゲノムに関する統合データベース。S.pombeに関する他のサイト、解析ツールへのリンクが充実しており、S.pombeに関する様々な検索、解析がこのサイトから実行できます。
language: en
publisher: Sanger Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22039153
distribution: Distribution
  description: documentation
  rights: terms-of-use
  access URL: http://www.pombase.org/downloads
landing page: http://www.pombase.org/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0001
status: Active @en
status: 稼動中

nbdc00333
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: United States Regulatory Agencies Unified Biotechnology Website

nbdc00333
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-07-03
source: Integbio Database Catalog
primary topic: United States Regulatory Agencies Unified Biotechnology Website

United States Regulatory Agencies Unified Biotechnology Website
type: Dataset
description: アメリカ国内で検査を受けた、食品、食料用遺伝子組み換え作物のデータベースです。 現在の情報を確認するためのリンク情報が http://usbiotechreg.epa.gov/ に記載されています。
language: en
publisher: National Biological Information Infrastructure
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.nbii.gov/termination/index.html
theme: T0014
theme: T0001
status: 運用終了
status: Closed @en

nbdc00334
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: WBD

nbdc00334
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: WBD

WBD
type: Dataset
alternative: World Biodiversity Database @en
description: WBD (World Biodiversity Database) contains 21 separate projects. The repository covers a total of 25,493 unique taxonomic groups as well as an additional 4,149 closely related groups. Information can be retrieved with a keyword search by entering the scientific name of a species, its common name, or the name of a project. The database also provides a list of the projects involved and gives a short description of each. @en
description: 世界中の生物種の分類データベース。各生物種についての解説、分類、同義語、文献情報、写真、映像、音声等を閲覧することができます。
language: en
publisher: ETI BioInformatics
  type: Organization
  address country: オランダ
  address country: Netherlands @en
landing page: http://wbd.etibioinformatics.nl/bis/index.php
theme: T0014
theme: T0029
theme: T0027
status: Active @en
status: 稼動中

nbdc00335
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: WER

WER
type: Dataset
alternative: WHO疫学週報トピックス(Weekly Epidemiological Record)
description: WHOの疫学週報、Weekly Epidemiological Record(WER)を邦訳したものを公開しています。この週報は、WHOのHealth Information Management and Dissemination が、国際保健規則（International Health Regulation）に準ずる疾患の流行や事例、あるいは、進行・再興感染症を含む公衆衛生上重要な伝染病に関する迅速な疫学情報を提供するもので、毎週金曜日にWHOのホームページ上で英・仏語で提供されています。その情報を簡単に入手できるように、邦訳、公開をしています。
language: ja
publisher: 神戸大学 医学部
  type: Organization
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18613558
landing page: http://wer.ams.kobe-u.ac.jp
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00336
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 文献データベースPRF/LITDB

文献データベースPRF/LITDB
type: Dataset
description: 国内のペプチドを主題として扱った論文のタイトル、雑誌名、独自の抄録を収録した文献データベース。内容に応じて10種の分野に文献を分別し、セクションコードが与えられています。
language: ja
publisher: 財団法人蛋白質研究奨励会
  type: Organization
  address country: 日本
landing page: http://www.prf.or.jp/litdb.html
theme: T0007
theme: T0030
status: 稼動中

nbdc00337
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-18
source: Integbio Database Catalog
primary topic: マウス画像データベース

マウス画像データベース
type: Dataset
description: 国立遺伝学研究所、浜松医科大学、宮崎大学、埼玉県がんセンター研究所等で維持しているマウス系統の画像、および国立遺伝学研究所系統生物研究センター哺乳動物遺伝研究室が所蔵している中国産野生ハツカネズミの標本画像を公開しています。
language: ja
publisher: 宮崎大学 フロンティア科学実験総合センター
  type: Organization
  address country: 日本
landing page: http://www.med.miyazaki-u.ac.jp/AnimalCenter/mouseDB/index2.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10089
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
status: 稼動中

nbdc00338
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 家畜ゲノムデータベース

nbdc00338
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-16
source: Integbio Database Catalog
primary topic: 家畜ゲノムデータベース

家畜ゲノムデータベース
type: Dataset
title: Animal Genome Research Program @en
description: 家畜ゲノム解析研究プログラム（略称：ＡＧＰ）で開発されたブタのマイクロサテライトマーカー等のＤＮＡマーカー、ブタ連鎖地図（ToNMaP）等についての情報を提供しています。
description: This is a database of genomic research associated with pigs. It includes DNA markers such as microsatellite markers for pigs, a swine linkage map viewer (ToNMaP), and the Sus scrofa radiation hybrid (SSRH), developed by the Animal Genome Research Program (AGP). Information of full-length cDNA clones and ESTs can also be accessed through this site, as well as those sequences, SNP mapping information, and BLAST results. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11167524
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8138161
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10690355
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10612229
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16441290
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17145712
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12648097
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15777643
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12755823
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10947985
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681463
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16263171
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12873213
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17112699
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16189668
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16712934
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12871218
landing page: http://animal.dna.affrc.go.jp/agp/database.html
landing page: http://animal.dna.affrc.go.jp/agp/database-j.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9825
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00339
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: 極域動物標本データベース

nbdc00339
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: 極域動物標本データベース

極域動物標本データベース
type: Dataset
title: Database of animal specimens from polar regions @en
description: 国立極地研究所が収蔵している全動物標本（約2500点）を掲載しています。極域に生息する生物の理解を少しでも深めるため、標本を撮影し、分類群などで検索できるデータベースとして公開されました。
description: Database of animal specimens from polar regions is a specimen database of animals in Antarctic regions maintained by the National Institute of Polar Research (NIPR). Each entry contains a specimen picture, sample number, photo number, scientific names and inforamation on habitat(s). Users can search specimens by classification based on table data in the site, scientific names, English names and sample numbers. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立極地研究所
  type: Organization
  label: National Institute of Polar Research @en
  address country: Japan @en
  address country: 日本
landing page: http://animal.nipr.ac.jp/index_e.html
landing page: http://animal.nipr.ac.jp/
theme: T0014
theme: T0029
theme: T0019
theme: T0027
status: Active @en
status: 稼動中

nbdc00340
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-10-30
source: Integbio Database Catalog
primary topic: 佐賀大学電子図書館 植物遺伝資源検索

nbdc00340
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-10-30
source: Integbio Database Catalog
primary topic: 佐賀大学電子図書館 植物遺伝資源検索

佐賀大学電子図書館 植物遺伝資源検索
type: Dataset
title: Plant Heredity Resource Search @en
description: 佐賀大学が所有する、柑橘及びミカン亜科植物の形態、分布、特徴及び画像を収録したデータベース。
description: Plant Heredity Resource Search is a database of plant species belonging to the mandarin orange family, particularly to the mandarin orange subfamily in the Saga University Digital Library. Each entry includes the Japanese names (family, subfamily, genus and species), scientific names, distribution data and others. These items except for scientific names are only available in Japanese. Some entries contain images of flowers, fruits, leaves, etc. @en
language: ja
language: en
publisher: 佐賀大学
  type: Organization
  label: Saga University @en
  address country: Japan @en
  address country: 日本
landing page: http://www.dl.saga-u.ac.jp/z3950/plant/search.html
landing page: http://www.dl.saga-u.ac.jp/z3950/plant/search_e.html
theme: T0014
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/23513
status: 運用終了
status: Closed @en

nbdc00342
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 森林生物情報

森林生物情報
type: Dataset
description: このデータベースは、森林病害虫獣を含め、日本の森林に関係する種の個々の生態等について簡単な説明と写真を掲載したものです。現在、菌類及び樹木病原性生物28件、昆虫・小動物類116種、鳥獣類14種、昆虫病原微生物32種、カエル類35種を収録しています。
language: ja
publisher: 国立研究開発法人森林研究・整備機構 森林総合研究所
  type: Organization
  address country: 日本
landing page: http://www.ffpri.affrc.go.jp/labs/seibut/bcg/index.html
theme: T0014
theme: T0029
theme: T0030
status: 稼動中

nbdc00343
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 動物行動の映像データベース (movie archives of Animal Behavior)

nbdc00343
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 動物行動の映像データベース (movie archives of Animal Behavior)

動物行動の映像データベース (movie archives of Animal Behavior)
type: Dataset
title: Movie Archives of Animal Behavior @en
description: 動物行動の映像データベース。動物の行動や種類別に映像を分類しています。
description: Movie Archives of Animal Behavior is a repository of published movie data on animal behaviors. This repository contains QuickTime (.mov) or mpeg (.mpg, mp4) movies and detailed information including author(s), shot day, name of species, keyword, explanation text, references, etc. Users can search movies by level of hierarchy, as well as keywords. @en
language: ja
language: en
publisher: 帝京科学大学 生命環境学部 アニマルサイエンス学科
  type: Organization
  label: Teikyo University of Science & Technology Faculty Life & Environmental Sciences Department of Animal Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://www.momo-p.com/index-e.html
landing page: http://www.momo-p.com/
theme: T0014
theme: T0029
status: Active @en
status: 稼動中

nbdc00344
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-03-07
source: Integbio Database Catalog
primary topic: 苫小牧研究林生命情報データベース

nbdc00344
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-03-06
source: Integbio Database Catalog
primary topic: 苫小牧研究林生命情報データベース

苫小牧研究林生命情報データベース
type: Dataset
title: TOEFbioinfo @en
alternative: TOEFbioinfo
description: 苫小牧研究林所蔵の標本情報のデータベースです。Lepidoptera （ 鱗翅目(チョウ目)）の標本情報を写真とともに収録しています。
description: This is a database of specimen of Lepidoptera in Tomakomai Experimental Forest (Forest Research Station) of Hokkaido University. @en
language: ja
language: en
publisher: 北海道大学 総合博物館
  type: Organization
  label: Hokkaido University The Hokkaido University Museum @en
  address country: Japan @en
  address country: 日本
landing page: http://bioinfo.lowtem.hokudai.ac.jp/db/modules/zukan/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7088
theme: T0029
theme: T0019
status: Active @en
status: 稼動中

nbdc00345
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: 南極昭和基地周辺の蘚苔類 (Handbook of Antarctic Mosses)

nbdc00345
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: 南極昭和基地周辺の蘚苔類 (Handbook of Antarctic Mosses)

南極昭和基地周辺の蘚苔類 (Handbook of Antarctic Mosses)
type: Dataset
title: Handbook of Antarctic Mosses @en
description: Handbook of Antarctic Mosses is a database of the bryophytes around Syowa Station, East Antarctica maintained by National Institute of Polar Research (NIPR). Each entry contains the scientific name, description with sketches, toxonomic and ecological information, distribution data with maps and photographs. Users can search bryophyte species from the taxonomical list, indexes of photographs or habitats. @en
description: 昭和基地周辺の蘚苔類の生態、分布を掲載しています。
language: ja
language: en
publisher: 情報・システム研究機構 国立極地研究所
  type: Organization
  label: National Institute of Polar Research @en
  address country: Japan @en
  address country: 日本
landing page: http://polaris.nipr.ac.jp/~antmoss/ham/index_e.html
landing page: http://polaris.nipr.ac.jp/~antmoss/ham/index_j.html
theme: T0014
theme: T0029
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3208
status: Active @en
status: 稼動中

nbdc00347
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: 萩庭さく葉コレクション

萩庭さく葉コレクション
type: Dataset
description: 故萩庭丈壽千葉大学名誉教授が主に日本全国で採集し作製した約５万点に及ぶ自生顕花植物のさく葉標本群のデータベースです。植物和名、学名、科名、採集地、採集年月日などの情報や、標本写真のデジタル画像を収録しています。
language: ja
language: en
publisher: 千葉大学 大学院薬学研究科
  type: Organization
  address country: 日本
landing page: http://sakuyou.p.chiba-u.jp/
theme: T0014
theme: T0029
status: 休止

nbdc00348
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Database for Genetic Engineering of Microalgae (微細藻類遺伝子工学データベース)

nbdc00348
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Database for Genetic Engineering of Microalgae (微細藻類遺伝子工学データベース)

Database for Genetic Engineering of Microalgae (微細藻類遺伝子工学データベース)
type: Dataset
title: Database for Genetic Engineering of Microalgae @en
description: This database provides information needed for research into the genetic properties of certain algae. To retrieve data an underlined link is selected and opened. No search option is provided, but detailed information is made available under a list of topics with the following headings: - Host-vector systems - Methods of gene introduction - Production of useful substances - Inhibitor resistant mutants - In vitro transposition systems and - Selective agents @en
description: 微細藻類の遺伝子組換えの実用化へ向けて役立つ技術を集めたもので、相互に利用を図ることを目指しています。現在は手持ちのラン藻のホストーベクター系を中心に、ベクターの構造、塩基配列、文献などの情報が収められています。
language: ja
publisher: 独立行政法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://riodb.ibase.aist.go.jp/db027/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/272134
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/490193
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/63737
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3055
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1167
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/93135
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3076
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1197
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1148
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3039
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/317936
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/28072
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/92938
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/197230
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/889396
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/269084
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1184
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1140
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/118562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/103690
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34077
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1180
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/32049
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2850
status: 運用終了
status: Closed @en

nbdc00349
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 文部科学省特定領域研究ゲノム研究のホームページ 研究成果情報

文部科学省特定領域研究ゲノム研究のホームページ 研究成果情報
type: Dataset
description: 文部科学省は、5年単位プロジェクトの4代目として、2005年4月に「特定領域研究ゲノム」をスタートさせました。このプロジェクトの研究成果情報を、カテゴリ、期間、領域、受付番号、氏名、キーワードで検索することができます。
language: ja
publisher: 文科省科研費ゲノム4領域特定領域「ゲノム」
  type: Organization
  address country: 日本
landing page: https://www.genome-sci.jp/tokutei2005/modules/g4_paper2/
theme: T0001
theme: T0030
status: 休止

nbdc00350
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-30
source: Integbio Database Catalog
primary topic: 木材データベース

nbdc00350
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-30
source: Integbio Database Catalog
primary topic: 木材データベース

木材データベース
type: Dataset
title: Wood Database @en
description: 木材標本庫所蔵の顕微鏡像、表面観、さく葉標本像、採集時の画像、種名、採集情報を掲載しています。
description: Wood database is a portal database about wood specimens housed in the xylarium of the Forestry and Forest Products Research Institute (TWTw). It's constructed with three databases; 1) Database of Japanese Woods This database contains surface views of wood specimens, optical microscopic images of preparations, and images of voucher herbarium specimens. 2) Database of Wood Specimens This database contains specimen no. (TWTw No.), family name, species name, original wood specimen no., collection date, collector(s), herbarium no. of the voucher specimen, herbarium housing the voucher specimen, provenance, country, altitude, latitude, longitude, habit, habitat, various notes, and note on collection or accession. 3) Microscopic Identification of Japanese Woods This database is an identification system of Japanese woods based on the IAWA List of Hardwood Identification (IAWA Committee 1989). @en
language: ja
language: en
publisher: 国立研究開発法人森林研究・整備機構 森林総合研究所
  type: Organization
  label: Forestry and Forest Products Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://db.ffpri.affrc.go.jp/WoodDB/index-E.html
landing page: http://db.ffpri.affrc.go.jp/WoodDB/index.html
theme: T0014
theme: T0029
status: Active @en
status: 稼動中

nbdc00351
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 3DMET

nbdc00351
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 3DMET

3DMET
type: Dataset
alternative: A three-dimensional-structure database of natural metabolites
description: This database is composed of three-dimensional structures and physical properties of natural metabolites, mainly those useful in agriculture (design of chemicals used in agriculture, compositional analysis of food). Compounds with similar structures and physical properties can be searched through an easy interface. @en
description: 天然分子の三次元構造、物性値を閲覧することができます。細胞内での分子認識においては三次元構造が重要であり、特に農業分野で利用できる（農薬の設計、食品の成分分析等）天然物を中心に構成されています。簡易な入力操作で、構造や物性が類似している化合物を検索し、その構造と種々の物性値を表示します。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.3dmet.dna.affrc.go.jp/
theme: T0022
theme: T0010
theme: T0011
status: Active @en
status: 稼動中

nbdc00352
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-30
source: Integbio Database Catalog
primary topic: 5S Ribosomal RNA Database

nbdc00352
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-06
source: Integbio Database Catalog
primary topic: 5S Ribosomal RNA Database

5S Ribosomal RNA Database
type: Dataset
description: 古細菌、真正細菌、真核生物の5S rRNAの塩基配列を提供しているデータベースです。二次構造や三次構造、修飾分子の情報も掲載されています。
description: 5S ribosomal RNA database contains information on nucleotide sequences of 5S rRNAs and their genes. Diagrams of the secondary structure of 5S rRNAs are provided, indicating the positions of deletion and insertion of nucleotides as they were observed in the corresponding alignments. A taxonomic browser is available as well as a search option for sequence alignments. @en
language: en
publisher: Department of Computational Biology, Adam Mickiewicz University
  type: Organization
  address country: ポーランド
  address country: Poland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592212
distribution: Distribution
  description: download
  access URL: http://combio.pl/rrna/download/
landing page: http://combio.pl/rrna/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00353
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ostogenesis imperfecta & Ehlers-Danlos syndrome variant databases

nbdc00353
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ostogenesis imperfecta & Ehlers-Danlos syndrome variant databases

ostogenesis imperfecta & Ehlers-Danlos syndrome variant databases
type: Dataset
description: 骨形成不全症とエーラー・ダンロス症候群を引き起こすと報告されている全ての遺伝子の変異情報を収録することを目的としています。骨形成不全症では、COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1, PLOD2, PPIB, SERPINH1, SP7遺伝子上に変異がみられます。ＩＩＩ型コラーゲン遺伝子COL3A1上の変異は主にエーラー・ダンロス症候群IV型を引き起こします。V型コラーゲン遺伝子COL5A1, COL5A2上の変異は古典型エーラー・ダンロス症候群を主に引き起こします。各遺伝子につき、遺伝子の基本情報、変異に関する報告数、変異配列リスト、ゲノムビューワ、OMIM、HGMD等の外部リンクなど、全てキュレートされた情報が登録されています。
description: This database contains all available information on variants in the collagen gene, that may lead to the development of the genetic disorder osteogenesis imperfecta. The genes in which these variations were found to appear are COL1A1, COL1A2, BMP1, CRTAP, FKBP10, IFITM5, LEPRE1, PLOD2, PPIB, SERPINF1, SERPINH1, SP7, TMEM38B and WNT1. When variations take place in the type III collagen gene, COL3A1, Ehlers-Danlos syndrome type IV is usually the outcome. Classical Ehlers-Danlos syndrome is most often caused by variations in the type V collagen genes, COL5A1 and COL5A2 . Copies of the two papers that describe the database are available for download in Adobe Acrobat format. @en
language: en
publisher: University of Leicester Department of Genetics
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399846
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9016532
landing page: http://www.le.ac.uk/genetics/collagen
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00354
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: A List of Biodiversity Websites in Japan

nbdc00354
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: A List of Biodiversity Websites in Japan

A List of Biodiversity Websites in Japan
type: Dataset
description: ネット上に存在する生物多様性関連のWebサイト454件のリンク集です。各生物種ごと、あるいは標本ごとにWebページが存在し、各々について種の特徴が判別できる精細な画像と、その撮影場所、年月日、和名、学名等、デジタル標本としての記載データが付記されているサイトのみを集めています。
description: A List of Biodiversity Websites in Japan is a portal site about catalog databases related to biodiversity in Japan. This database collects only the web site that includes images clearly indicating characteristic of each species or specimen with their photography information (place and date), Japanese name, a scientific name, etc. @en
language: ja
language: en
publisher: 法政大学
  type: Organization
  label: Hosei University @en
  address country: Japan @en
  address country: 日本
landing page: http://protist.i.hosei.ac.jp/gbif/DB_list/index.html
landing page: http://protist.i.hosei.ac.jp/gbif/DB_list/indexE.html
theme: T0014
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
status: Active @en
status: 稼動中

nbdc00355
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ACLAME

nbdc00355
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ACLAME

ACLAME
type: Dataset
alternative: A CLAssification of Mobile genetic Elements @en
description: ファージゲノムやプラスミド、トランスポゾンを含む、原核生物の全ての既知の可動性遺伝因子(Mobile Genetic Elements; MGEs)の収集とクラス分けを行ったデータベースです。ゲノムや遺伝子の情報を提供するだけでなく、タンパク質や遺伝子、またはそれ以上のレベルにおいての機能的モジュールの包括的なクラス分けを目指しています。
description: ACLAME Version 4 is a database of the mobile genetic elements (MGEs) as found in the genomes of all phages, plasmids and transposons known at present - 811 hosts in total. Information on 122,154 proteins, discovered to be present in 2,326 MGEs, is provided. The proteins were grouped in families as follows: The prophages contained 6,822 clusters, the plasmids 18,228 groups, the viruses and prophages 16,057 groups and the viruses 11,503 clusters. The database is in the process of developing a classification system of the functional modules of these MGEs at the protein level, gene level, and higher. Keyword and Blast search options are available. An option is also offered whereby host-specific groups of MGEs can be viewed. @en
language: en
publisher: Universite Libre de Bruxelles
  type: Organization
  address country: ベルギー
  address country: Belgium @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17482656
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17064288
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18234706
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681355
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18238785
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19933762
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17614261
distribution: Distribution
  description: exporter.cgi
  rights: terms of use.html
  access URL: http://aclame.ulb.ac.be/perl/Aclame/Tools/exporter.cgi
landing page: http://aclame.ulb.ac.be/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0001
theme: T0019
status: Active @en
status: 稼動中

nbdc00356
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: addgene

nbdc00356
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: addgene

addgene
type: Dataset
description: Addgeneは、研究者にプラスミドを分配する非営利組織です。数百の研究室と共同で、論文発表で用いた高品質なプラスミドのライブラリを収集し、プラスミドレポジトリを構築しています。プラスミドと文献をリンクさせることにより、研究者はいつでも必要とするプラスミドとそれに関連するデータを入手することができます。プラスミド寄託用のページ、プラスミド依頼用のページ、プラスミドの配列解析やベクターデータベースへのリンク、関連プロトコルを収集したページが用意されています。
description: Addgene is a non-profit organization providing plasmids to researchers. It is a collaboration with several hundred research teams, creating a high quality plasmid library and repository used for publications. By linking the plasmid to its publications, researchers always have access to necessary plasmid and associated data. The site contains links to deposit plasmids, request plasmids, access sequence information on plasmids, as well as links to a vector database and associated protocols. They provide Viral service, CRISPR tools, Fluorescent proteins, Cancer resources as special colections. @en
language: en
publisher: Addgene
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.addgene.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8355
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0005
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0018
status: Active @en
status: 稼動中

nbdc00357
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Algae Resource Database

nbdc00357
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Algae Resource Database

Algae Resource Database
type: Dataset
description: 藻類に関する株情報の検索、寄託情報、遺伝子情報、藻類の画像、文献情報を検索することができます。その他、株の分譲に関する情報も得ることができます。
description: Algae Resource Database is a database of micro and macro algae culture collections established by National Institute for Environmental Studies (NIES) and collaborative institutes. Each entry contains information on the stock center, scientific names, locality, habit, cell size, organization (unicellular, multicellular, colonia, flagellate, filamentous, coccoid or branched), gene, etc, and some entries include images. Users can search available algal resources by keywords from those items. This database also provides phylogenetic trees, an image list and a search engine of references related to algal research. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: top.jsp
  access URL: http://www.shigen.nig.ac.jp/algae/forwardToDownloadPageAction.do
  access URL: http://shigen.nig.ac.jp/algae/download.jsp
landing page: http://www.shigen.nig.ac.jp/algae/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3041
theme: T0001
theme: T0006
theme: T0017
theme: T0030
theme: T0029
status: Active @en
status: 稼動中

nbdc00358
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Allie

nbdc00358
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Allie

Allie
type: Dataset
alternative: A Search Service for Abbreviation / Long Form
description: Allie is a database and an online search service for abbreviations and long forms used in life science. Allie contains an abbreviation list and its corresponding bibliographic data. Users can search for the long forms of abbreviations or the abbreviations of long forms from titles and abstracts of papers in the entire MEDLINE. Search results show abbreviations or long forms, research areas, co-occurring abbreviations and PubMed/MEDLINE information related to the inquired item. @en
description: 文献中に多く出現する略語は多義語であることが多く、特に専門外の読者には理解するのに困難を伴うことがあります。Allieはこの問題に対する一つの解となるよう開発されており、米国国立保健図書館(National Library of Medicine, NLM)の生物医学分野における書誌情報データベースであるMEDLINERに含まれる全ての題目と要旨を対象として、略語とその展開形を検索します。 MEDLINEは2千万件を超す書誌情報を収めており、実際の文献中に出現する領域固有の略語とその展開形を抽出するのに相応しいものとなっています。またAllie Portal (http://data.allie.dbcls.jp/) からSPARQLエンドポイント及びRDFデータのダウンロードサイトへのリンクもご利用いただけます。
language: ja
language: en
publisher: 情報・システム研究機構 ライフサイエンス統合データベースセンター
  type: Organization
  label: Research Organization of Information and Systems Database Center for Life Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21498548
distribution: Distribution
  description: README
  rights: terms.html
  access URL: ftp://ftp.dbcls.jp/allie
landing page: http://allie.dbcls.jp/
landing page: http://allie.dbcls.jp/en
theme: T0019
status: Active @en
status: 稼動中

nbdc00359
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: Aminoacyl-tRNA synthetases database

nbdc00359
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Aminoacyl-tRNA synthetases database

Aminoacyl-tRNA synthetases database
type: Dataset
description: 既知のすべてのアミノアシル-tRNA合成酵素のアミノ酸配列を集積しているデータベースです。対応するアミノ酸や生物種により分類されています。X線回折やNMRで解析した三次元構造も掲載されています。アミノアシル-tRNA合成酵素はDNAから蛋白質への遺伝情報の転移を確実にする広範な酵素群です。それらはアミノ酸のtRNAへの結合を触媒し、アンチコドンのヌクレオチドトリプレットと対応するアミノ酸とをマッチングすることにより、遺伝暗号の法則を確立します。
description: AARS is a database of Aminoacyl-tRNA synthetases in a number of microbial organisms. This repository provides a link 'Amino acid sequences', which opens up a list of amino acids for Class I Aminoacyl-tRNA synthetases and for Class II Aminoacyl-tRNA synthetases. Selecting any one of these amino acids provides entry to a page containing detailed information on the organism as well as the sequence of nucleotide bases of the amino acid. An option to download batches of Fasta files of the sequences is available. The 3D X-ray diffraction structures and the NMR structures of the aminoacyl-tRNA synthetases are also accessible. @en
language: en
publisher: Poznan Supercomputing and Networking Center
  type: Organization
  address country: ポーランド
  address country: Poland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125115
distribution: Distribution
  access URL: http://rose.man.poznan.pl/aars/batch.html
landing page: http://rose.man.poznan.pl/aars
theme: T0021
theme: T0022
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00360
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Analysis of CASP8 targets and predictions

nbdc00360
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Analysis of CASP8 targets and predictions

Analysis of CASP8 targets and predictions
type: Dataset
description: CASP8に参加したグループの予測構造と、その評価を納めたデータベースです。各グループの予測構造はPyMOLを用いて表示することができます。
description: Analysis of CASP8 targets and predictions is a database about the analysis of CASP8 targets and predictions. This database provides 3D models (TS: Tertiary structure prediction) which were evaluated using LGA GDT-TS scores and several other methods. Server models superimposed with target structures are downloadable and can be visualized as PyMOL scripts. Structure images including mostly animated GIFs on target pages are prepared in PyMOL. @en
language: en
publisher: University of Texas Southwestern Medical Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20157476
distribution: Distribution
  access URL: http://prodata.swmed.edu/CASP8/evaluation/CASP8Home.htm
landing page: http://prodata.swmed.edu/CASP8/evaluation/CASP8Home.htm
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00361
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: The Androgen Receptor Gene Mutations Database World Wide Web Server

nbdc00361
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Androgen Receptor Gene Mutations Database World Wide Web Server

The Androgen Receptor Gene Mutations Database World Wide Web Server
type: Dataset
description: アンドロゲン(男性ホルモン)受容体変異データベースです。PDFファイルによる一覧と、FileMakerPro用データベースファイルのダウンロードによりデータが得られます。
description: Androgen Database is a repository that provides information about mutations of the Androgen Receptor gene. These mutations may have an effect on the development and progress of prostate cancer. Mutations which inactivate androgen receptor genes, thereby creating severe androgen insensitivity, may result in a full or partial external female phenotype. The mutations contained in this database are listed in a simple 5' - 3' sequence. The complete Database of Androgen Receptor gene Mutations is available for download in PDF format, Excel format and as FileMakerPro. @en
language: en
publisher: Lady Davis Institute for Medical Research
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15146455
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15242343
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399843
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15705293
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10727996
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22334387
distribution: Distribution
  access URL: http://androgendb.mcgill.ca/
landing page: http://androgendb.mcgill.ca/
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00362
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-10-13
source: Integbio Database Catalog
primary topic: AphidBase

nbdc00362
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-10-13
source: Integbio Database Catalog
primary topic: AphidBase

AphidBase
type: Dataset
alternative: The Aphid Genome Database
description: Aphidbase 2.1 is a database containing information collected in a study of the genomes of aphids. An aphidbase blast server is available, as well as GBrowse, from which information on the assembly of the genome of A. pisum may be collected. The apollo-aphidbase2.gnlp may also be accessed and downloaded. Several links lead to associated databases as follows: PhylomeDB opens up a database of collections of gene phylogenies (phylomes). AcypiCyc leads to a database of the metabolic pathways of A. pisum. GO gives access to the Chado Term Hierarchy Report. Galaxy leads to a database, which can be accessed only by logging in with a registered e-mail address and password. @en
description: アブラムシゲノム解析コンソーシアムによる成果として、エンドウヒゲナガアブラムシのドラフト配列とアノテーションを公開しています。各種プログラムによる自動的な遺伝子予測結果に加え、着目した2000以上の遺伝子に対しては人手によるキュレーションが施されています。遺伝子モデルに対する機能アノテーションは、系統樹解析をもとにしたオーソログの予測から、ショウジョウバエのGene Ontologyを自動的に付与しています。
language: en
publisher: Institut national de la recherche agronomique
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20482635
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17237053
distribution: Distribution
  access URL: http://bipaa.genouest.org/is/aphidbase/
landing page: http://bipaa.genouest.org/is/aphidbase/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7028
theme: T0001
theme: T0007
theme: T0002
status: Active @en
status: 稼動中

nbdc00363
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: AQUA DNABook

nbdc00363
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-15
source: Integbio Database Catalog
primary topic: AQUA DNABook

AQUA DNABook
type: Dataset
description: ヒラメの遺伝地図作成に用いたマイクロサテライトマーカーと魚病診断に用いるプライマーをスポットしたDNAブックです。コイヘルペスなど病原体17種類のDNA断片と、ヒラメやマダイなどの耐病性の判定に利用できる217種類のDNA断片が収められています。DNAブックから調べたい病気のDNAを切り取って溶液に溶かし、魚から採取した試料と反応させれば、約2時間ほどで病気の有無などが診断できます。水産・海洋分野の新しいツールになることが期待されます。
language: ja
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
landing page: http://gerg03.gsc.riken.jp/DNABook_DB/VIEW/Book_Top.php?BOOK_ID=BOOK_3
theme: T0015
theme: T0005
theme: T0002
theme: T0017
status: 運用終了
status: Closed @en

nbdc00364
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Arabidopsis thaliana EST Index

nbdc00364
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Arabidopsis thaliana EST Index

Arabidopsis thaliana EST Index
type: Dataset
description: This is a database of Arabidopsis thaliana expressed sequences. The database contains consensus gene sequences and EST reads and allows for BLAST and keyword search. Data are available for download. @en
description: かずさDNA研究所で決定したシロイヌナズナのEST配列と、非冗長タンパク配列データベースとの間で行ったblastx検索の結果が収録されています。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10907847
distribution: Distribution
  access URL: http://est.kazusa.or.jp/en/plant/arabi/EST/
landing page: http://est.kazusa.or.jp/en/plant/arabi/EST/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0002
status: Active @en
status: 稼動中

nbdc00365
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Arabidopsis thaliana project

nbdc00365
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Arabidopsis thaliana project

Arabidopsis thaliana project
type: Dataset
description: ドイツのシロイヌナズナゲノム解析グループのホームページです。クローンやコンティグ、遺伝子情報を公開しています。データベースMatDBでは、シロイヌナズナゲノムデータベースであるMIPS、TIGR、TAIRのアノテーションと配列データの統合情報を提供しています。
description: This database contains information on the complete sequenced genome of the Arabidopsis thaliana. The Arabidopsis thaliana genome project aims to decode this information and to connect it to an array of biological data in order to discover the functions and interactions of these sequences and genes. Heatmaps of the Arabidopsis thaliana chromosomes, graphically indicating the position and density of sequence features, may be viewed. Lists that are available are a clone list, chromosome list, genetic element list and a list of sequenced contigs. Arabidopsis thaliana genome sequence data may be downloaded for private use. @en
language: en
publisher: Helmholtz Zentrum Munchen
  type: Organization
  address country: Germany @en
  address country: ドイツ
distribution: Distribution
  access URL: http://pgsb.helmholtz-muenchen.de/plant/athal/download/index.jsp
landing page: http://mips.helmholtz-muenchen.de/plant/athal/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
status: Active @en
status: 稼動中

nbdc00366
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: Ares lab Yeast Intron Database

nbdc00366
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: Ares lab Yeast Intron Database

Ares lab Yeast Intron Database
type: Dataset
description: Ares lab Yeast Intron Database is a database for information about the spliceosomal introns of the yeast Saccharomyces cerevisiae. It contains known spliceosomal introns in the yeast genome and documented the splice sites actually used. Through the use of microarrays designed to monitor splicing, splice site contexts are identified and analyzed in terms of the nature and activities of the trans-acting factors that mediate splice site recognition. This database also includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page for browsing and can be downloaded for other types of analysis. @en
description: 真核ゲノムのスプライシングパターンや制御を理解するために、酵母ORFのイントロン情報やスプライシング因子破壊株のマイクロアレイデータを蓄積しています。各エントリーには、ORF名、イントロンの数と配列、スプライシング位置、検証した文献情報、発現ヒートマップなどが含まれています。
language: en
publisher: University of California, Santa Cruz
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10496214
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10734188
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10024174
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11988574
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12073325
distribution: Distribution
  access URL: http://intron.ucsc.edu/yeast4.3/
landing page: http://intron.ucsc.edu/yeast4.3/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0021
theme: T0024
theme: T0006
status: Active @en
status: 稼動中

nbdc00367
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ARSA

nbdc00367
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ARSA

ARSA
type: Dataset
alternative: All-round Retrieval of Sequence and Annotation
description: DDBJがWWWならびにWeb APIで提供している高速なキーワード検索サービスです。国際塩基配列データベースのほか、生命科学分野の主要なデータベースに対して統合的な検索を行うことができます。SRSに代表されるような従来のキーワード検索システムでは、検索条件が複雑になるに従って加速度的に検索レスポンスが悪化したり、データ量の増加に伴ってキーワードインデックスの生成に長時間を要したりする課題がありますが、ARASAではXML型データベースエンジンShunsakuEngineを利用することにより、複合条件検索でも高速な検索を実現しています。
description: ARSA is a database with a high-speed retrieval system of sequence and annotation data maintained by DNA Data Bank of Japan (DDBJ). ARSA covers amino acid sequence data derived from patents and various databases including DDBJ, UniProt, PDB, etc. Users can search for sequences and annotations using Boolean operators, and download the search results in Flat File, XML, or fasta format. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生命情報・DDBJ研究センター
  type: Organization
  label: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems @en
  address country: Japan @en
  address country: 日本
landing page: http://arsa.ddbj.nig.ac.jp/top-j.html
landing page: http://arsa.ddbj.nig.ac.jp/top-e.html
theme: T0021
theme: T0001
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00368
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: AS-ALPS

nbdc00368
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: AS-ALPS

AS-ALPS
type: Dataset
alternative: Alternative splicing-induced ALteration of Protein Structure @en
description: AS-ALPS is a database of alternative splicing products. The database contains information on how splice isoforms impact protein structures and protein-protein interactions. When investigating a gene, information on all isoforms can be obtained and domains affected by each isoform are highlighted. @en
description: 遺伝子機能の多様化に重要な役割を果たす現象と考えられている選択的スプライシングが、タンパク質の立体構造や機能にどのような影響を与え得るかについてコンピュータにより解析した結果をまとめたデータベースです。
language: en
publisher: 長浜バイオ大学
  type: Organization
  label: Nagahama Institute of Bio-Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19015123
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16872759
distribution: Distribution
  rights: http://as-alps.nagahama-i-bio.ac.jp/index.php?Lang=ja
  rights: http://as-alps.nagahama-i-bio.ac.jp/index.php?Lang=en
  access URL: http://as-alps.nagahama-i-bio.ac.jp/index.php?Lang=ja
  access URL: http://as-alps.nagahama-i-bio.ac.jp/index.php?Lang=en
landing page: http://as-alps.nagahama-i-bio.ac.jp/
theme: T0021
theme: T0022
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00369
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-16
source: Integbio Database Catalog
primary topic: CAoGD

nbdc00369
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-16
source: Integbio Database Catalog
primary topic: CAoGD

CAoGD
type: Dataset
alternative: Comprehensive Aspergillus oryzae Genome Database
description: This is a genome sequence database for Aspergillus oryzae, determined using the RIB40 strain from the National Research Institute of Brewing. Users can perform keyword searches of gene annotations in the genome, BLAST searches of genomic sequences, and download data. @en
description: 麹菌Aspergillus oryzae のゲノム配列データベースです。Aspergillus oryzaeのゲノム配列決定には、酒類総合研究所のRIB40株が使われました。ゲノムの遺伝子アノテーションに対するキーワード検索や、ゲノム配列のBlast検索、データのダウンロードができます。
language: en
publisher: 独立行政法人酒類総合研究所
  type: Organization
  label: National Research Institute of Brewing @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: https://nribf21.nrib.go.jp/CAoGD/Download/
landing page: https://nribf21.nrib.go.jp/CAoGD/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/510516
theme: T0001
status: Active @en
status: 稼動中

nbdc00370
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ASSETs

nbdc00370
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: ASSETs

ASSETs
type: Dataset
alternative: Alternative Splicing Sequence Enriched Tags @en
description: 二つのマウス細胞株（メラノサイト、メラノーマ）由来の完全長cDNA ライブラリから選択的スプライシングライブラリ(Alternative Splicing Library: ASL)を構築し、そこから濃縮した選択的スプライシングクローン（Alternative Splicing Sequence TagS: ASSETS）の配列データを得ました。ASSETS の配列はスプライシングの上流と下流の配列を含んでいるためにマウスゲノムと配列と比較することで選択的スプライシングのパターンを知ることが可能となります。Watanuki et. al., Nature Methods (2004) のsupplementary informationです。
description: ASSETs is a resource for alternate splicing information, containing data tables from a study of mouse alternate splicing that developed a library of expressed alternate splicing tags. Data is available for download. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15782199
distribution: Distribution
  description: DLASSETs.htm
  access URL: http://genome.gsc.riken.jp/splicing/DLASSETs.htm
landing page: http://genome.gsc.riken.jp/splicing/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
status: Active @en
status: 稼動中

nbdc00371
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: ASTRA （アーカイブ）

nbdc00371
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: ASTRA （アーカイブ）

ASTRA （アーカイブ）
type: Dataset
title: ASTRA (Archive) @en
alternative: Alternative Splicing and Transcription Archives @en
description: This is a database of alternative splice variants and their transcripts. The database is named ASTRA, an anagram for 'Alternative Splicing and TRanscription Archives'. Information was gathered by studying the patterns by which alternative splicing of DNA sequences take place and how transcription of these sequences are initiated. This study involved the human genome and that of five additional species namely the mouse, D. melanogaster, C. elegans, A. thaliana and O.sativa. @en
description: ASTRAは、ヒト、マウス、ハエ、線虫、シロイヌナズナ、イネについて、選択的スプライシングと選択的転写開始のパターンを収集したデータベースです。独自のアルゴリズムを用いて、ゲノム塩基配列とcDNA配列のマッピング結果から得られるエキソン-イントロン構造から、カセット型、5'end型等の種々の選択的スプライシングと選択的転写開始のパターンを検出し、分類しています。 国立研究開発法人産業技術総合研究所によるオリジナルサイトの運用は終了しました。引き続き生命科学系データベースアーカイブからASTRAをご利用いただけます。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16219431
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16500940
landing page: http://dbarchive.biosciencedbc.jp/en/astra/desc.html
landing page: http://dbarchive.biosciencedbc.jp/jp/astra/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00372
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: AtGenExpress

nbdc00372
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: AtGenExpress

AtGenExpress
type: Dataset
description: 理化学研究所植物科学研究センターがMaxPlank研究所などと協力して、植物において初めて大規模なトランスクリプトームデータ（Affymetrixチップ1000枚以上）を収集して公開した「AtGenExpress」国際プロジェクト（2004年）の成果です。材料にはモデル植物シロイヌナズナを用い、生育段階、器官特異性、ストレス応答、ホルモン応答、栄養、光など、植物の成長と環境応答に関する基本データを網羅しています。
description: Atgenexpress is a database of Arabidopsis gene expression. The main tool available at this site is an applet that makes connections between gene expression in various stress and environmental conditions. Users can explore expression by any of several experimental parameters, including tissues, conditions, and genotypes. Data is available for download. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18419781
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15806101
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17376166
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15086809
landing page: http://atpbsmd.yokohama-cu.ac.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0020
theme: T0002
theme: T0024
status: Active @en
status: 稼動中

nbdc00373
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: Atlas (ISH Data Base) （アーカイブ）

nbdc00373
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: Atlas (ISH Data Base) （アーカイブ）

Atlas (ISH Data Base) （アーカイブ）
type: Dataset
title: Atlas (ISH Data Base) (Archive) @en
description: 細胞性粘菌 Dictyostelium discoideum AX2 株 cDNAクローンについて、Whole-mount in situ hybridizationに基づく空間的遺伝子発現情報（画像）を収録したデータベースです。シンプルな発生・分化をすることでモデル生物として利用されているDictyostelium discoideumの発生期に発現する遺伝子について局在データを示すことにより、それらの遺伝子機能について推察することができます。部位特異的な遺伝子についてDicty_cDBへのリンクから遺伝子の構造とアノテーション情報を得ることができます。 筑波大学によるオリジナルサイトの運用は終了しました。引き続き生命科学系データベースアーカイブから「Atlas (ISH Data Base)」をご利用いただけます。
description: Atlas (ISH Data Base) is a database of spatial gene expression profiles about Dictyostelium discoideum using in situ hybridizations. The database contains images of Dictyostelium gene expression at several different developmental stages. Users can search by clone, gene, product, or accession ID. @en
language: ja
publisher: 筑波大学大学院 生命環境科学研究科
  type: Organization
  label: University of Tsukuba Graduate School of Life and Environmental Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15470253
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12796308
landing page: http://dbarchive.biosciencedbc.jp/jp/dicty-atlas/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/366501
theme: T0024
theme: T0029
theme: T0002
status: Active @en
status: 稼動中

nbdc00374
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ATTED-II

nbdc00374
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-01-17
source: Integbio Database Catalog
primary topic: ATTED-II

ATTED-II
type: Dataset
alternative: Arabidopsis thaliana trans-factor and cis-element prediction database
description: AtGenExpressに蓄積されているシロイヌナズナのマイクロアレイデータから計算した遺伝子共発現情報を公開しています。遺伝子機能予測に関係するシロイヌナズナの共発現遺伝子や予測cis elementsを提供しています。共発現は重みつきピアソン相関関数をベースとしたMutual rank（MR）で表わされます。
description: ATTED-II is a database of co-regulated gene relationships and is useful to estimate the functions of genes. With DNA microarray analysis, the information on relative expression levels of thousands of genes is simultaneously produced. Large amounts of microarray data provide information on changes in transcript levels. By using patterns of gene expression changes between genes of interest, gene coexpression (similarity of expression) can be defined. Such coepression is expressed by Pearson's correlation coefficients. genes for protein complexes often show strong gene coexpression. By integrating known protein-protein interactions information and gene coexpression, complementary information of the gene function network is obtained. @en
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17130150
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20383554
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18953027
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21217125
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19767600
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19620096
distribution: Distribution
  description: download.shtml
  rights: license.shtml
  access URL: http://atted.jp/top_download.shtml
landing page: http://atted.jp/
landing page: http://atted.jp
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0024
theme: T0026
theme: T0001
theme: T0002
status: Active @en
status: 稼動中

nbdc00375
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BCBC

nbdc00375
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BCBC

BCBC
type: Dataset
alternative: Beta Cell Biology Consortium @en
description: The Beta Cell Biology Consortium was to advance understanding associated with the development and function of the islets of Langerhans through functional genomics research data and distribution of resources; however, they have stopped operations as of August 1, 2015. The database contains information about antibodies, genomics study, mouse ECS lines, and mouse strains as screenshots. @en
description: Beta Cell Biology Consortiumは、膵臓ランゲルハンス島の発生と機能に関する理解を進展させる学際的アプローチの促進を目的としています。長期的な目標として、インスリン・デリバリーのための細胞療法の開発を掲げています。ゲノム機能解析研究のデータや、研究リソースの配布を行っています。
language: en
publisher: Beta Cell Biology Consortium
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.betacell.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0018
status: Active @en
status: 稼動中

nbdc00376
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BeanGenes (A Phaseolus/Vigna sp. Database)

nbdc00376
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BeanGenes (A Phaseolus/Vigna sp. Database)

BeanGenes (A Phaseolus/Vigna sp. Database)
type: Dataset
description: マメ（インゲンマメ属、ササゲ属）ゲノムデータベースへのリンク集です。※アクセス不可のページが多数みられます。
description: This is a database for gene and genome information of beans. Most of the pages are not accessible to view (Feb., 2017). @en
language: en
publisher: North Dakota State University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://beangenes.cws.ndsu.nodak.edu
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3883
theme: T0001
status: 休止
status: Inactive @en

nbdc00377
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Biology Links

nbdc00377
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Biology Links

Biology Links
type: Dataset
description: ハーバード大学分子細胞生物学部で公開している生物学全般に関するリンク集です。生物学の各分野や、インターネットバイオリソース、検索エンジン、データバンク、モデル生物データベースといった分類ごとに有用なリンク情報が集められています。
language: en
publisher: Harvard University Department of Molecular and Cellular Biology
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://mcb.harvard.edu/BioLinks.html
theme: T0031
status: 休止
status: Inactive @en

nbdc00378
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Biomarker Candidates (Inferences of Novel Biomarker Candidate Functions)

nbdc00378
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Biomarker Candidates (Inferences of Novel Biomarker Candidate Functions)

Biomarker Candidates (Inferences of Novel Biomarker Candidate Functions)
type: Dataset
description: バイオマーカー候補と臨床的障害の関係から新規のバイオマーカー候補を見出すためのデータベースです。MEDLINE、OMIM、PPIs等の文献情報からバイオマーカー関連の情報をまとめています。キーワード検索が可能です。
description: This is a database of new biomarker candidates based on relationships between biomarker candidates and clinical disorders. The database integrates information related to biomarkers from literature databases, such as MEDLINE, OMIM and PPI. Keyword search is available. @en
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
landing page: http://omicspace.riken.jp/Biomarker/
theme: T0015
theme: T0012
status: 休止
status: Inactive @en

nbdc00379
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BioSystems

nbdc00379
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BioSystems

BioSystems
type: Dataset
description: This database is a collection of metabolic and signaling pathways in organisms, as well as interaction sets between biological molecules associated with disease and other biological processes. Each entry contains information including pathway maps, relevant citations, genes, proteins sequences, and data on compounds. @en
description: 代謝パスウエイやシグナルパスウエイ、疾患やその他の生体内プロセスに関わる生体分子の相互作用セットを収集したデータベースです。現在は、KEGGとEcoCycデータベースのパスウエイを対象としています。各エントリーには、パスウエイ図、文献情報、遺伝子、タンパク質配列、化合物のデータが含まれています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19854944
distribution: Distribution
  description: README.txt
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/pub/biosystems/
landing page: http://www.ncbi.nlm.nih.gov/biosystems/
theme: T0015
theme: T0010
theme: T0026
theme: T0007
theme: T0013
theme: T0030
theme: T0029
status: Active @en
status: 稼動中

nbdc00380
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BMRB

nbdc00380
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-26
source: Integbio Database Catalog
primary topic: BMRB

BMRB
type: Dataset
alternative: Biological Magnetic Resonance Data Bank
description: ADIT-NMR、SMSDepにより登録されたペプチド、タンパク質、核酸等、生体高分子のNMR実験データを公開しています。データの検索、各データエントリーからPDBなど他のデータベースへのリンク、データ可視化サイトより構成されています。PDBjが運用する日本のミラーサイト（ http://bmrb.pdbj.org/ ）があります。
description: BMRB is a database of biomolecular magnetic resonance data. Proteins, peptides, and nucleic acids, and other molecules are represented in NMR and PDB data form. Several search functions are supported and users can upload or download data. @en
language: en
publisher: University of Wisconsin System Board of Regents
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17984079
distribution: Distribution
  description: standards
  rights: mission statement.shtml
  access URL: http://www.bmrb.wisc.edu/ftp/pub/bmrb/
landing page: http://www.bmrb.wisc.edu/
theme: T0022
theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00381
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-11-29
source: Integbio Database Catalog
primary topic: BombMap

nbdc00381
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: BombMap

BombMap
type: Dataset
alternative: Bombyx mori genome Map information system @en
description: カイコゲノムの遺伝地図と物理地図情報が統合されたデータベースです。 グラフィカルなビューアにより、遺伝地図と物理地図の関連やマーカ情報を参照できます。
description: This database integrates genetic maps and molecular linkage map information on the silkworm genome. The association between the genetic and physical maps, as well as marker information, can be easily viewed through the graphical interface. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://sgp.dna.affrc.go.jp/BombMap/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0001
theme: T0003
theme: T0021
status: Active @en
status: 稼動中

nbdc00382
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Bombyx Trap DataBase

nbdc00382
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Bombyx Trap DataBase

Bombyx Trap DataBase
type: Dataset
description: エンハンサートラップ法によりカイコの新規突然変異系統を作出し、これらの系統におけるGFPレポーター発現部位情報や画像、ゲノム挿入位置情報などをまとめた新規突然変異系統データベースを構築しました。カイコゲノムデータベース（KAIKObase）との統合を行い、トランスポゾンベクターの挿入位置が染色体地図にマップされるようになりました。
description: This database contains information on silkworm mutant lines generated through the enhancer trap method, including GFP reporter expression sites and images, and genomic insertion sites. In collaboration with the silkworm genome database (KAIKObase), transposon vector insertion sites can be mapped on to a chromosomal map. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19843344
landing page: http://sgp.dna.affrc.go.jp/ETDB/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0024
theme: T0029
theme: T0005
theme: T0021
theme: T0014
status: Active @en
status: 稼動中

nbdc00383
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Bookshelf

nbdc00383
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Bookshelf

Bookshelf
type: Dataset
description: This is a collection of books and documents in the biology and biomedical field that can be accessed online for free. References within the text are linked to PubMed. @en
description: オンラインで利用できる生物医学関連の電子書籍を収録しています。テキスト中の引用文献はPubMedにリンクしています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: openaccess
  rights: copyright
  access URL: http://www.ncbi.nlm.nih.gov/books/about/ftp/
landing page: http://www.ncbi.nlm.nih.gov/books
theme: T0030
status: Active @en
status: 稼動中

nbdc00384
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Breast Tumor Image Database

nbdc00384
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Breast Tumor Image Database

Breast Tumor Image Database
type: Dataset
description: Breast Tumor Image Database is an image database of breast tumors constructed by National Kyusyu Cancer Center. This database contains mammograms, ultrasound images, MRI data sets, cytology and histological images. Each entry includes a disorder name, basic and detailed data such as location and size of the tumor, as well as images with inspection data. Users can search medical cases or images by keywords, histological classification, kinds of cases, age and inspection methods. @en
description: マンモグラフィ検診の導入や診断機器の進歩により、早期乳癌の発見率は増加してきました。一方で、境界病変や非触知病変、腫瘤非形成型病変など診断に苦慮する機会も増えています。そこで、医療関係者の方々を対象として乳腺疾患の医用画像データベースを構築しています。匿名化された乳腺腫瘍の症例について、マンモグラフィ検査や超音波（エコー）検査、MRI検査の診断画像、細胞診や病理組織の顕微鏡像および病理所見等をアーカイブ化しており、組織学的分類や年齢から検索できる症例検索、検査方法や検査画像の所見から検索できる画像検索が可能です。
language: ja
language: en
publisher: 国立研究開発法人国立病院機構 九州がんセンター
  type: Organization
  label: National Hospital Organization Kyushu Cancer Center @en
  address country: Japan @en
  address country: 日本
landing page: http://breast-tumor.midb.jp/lib/chlang.php?lang=ja
landing page: http://breast-tumor.midb.jp/lib/chlang.php?lang=en
theme: T0015
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00385
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: Broad Institute of MIT and Harvard

nbdc00385
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: Broad Institute of MIT and Harvard

Broad Institute of MIT and Harvard
type: Dataset
description: The Broad Institute is a research institute established in 2004 between the Whitehead Institute at Massachusetts Institute of Technology (MIT) and the Harvard Institute of Chemistry and Cell Biology (ICCB) at Harvard University. Users can download software developed by the institute or browse research data. It contains 'Integrative genomics viewer', 'Genome Analsis Toolkit', and 'TumorPortal', etc. @en
description: ブロード研究所は、マサチューセッツ工科大学（MIT）のホワイトヘッド研究所とハーバード大学のHarvard Institute of Chemistry and Cell Biology (ICCB) という遺伝子医学の二大研究所が2004年に統合改組して設立された研究機関です。ブロード研究所で開発したソフトウエアや、研究データもダウンロードできます。
language: en
publisher: Broad Institute of Harvard and MIT
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: terms-conditions
  access URL: http://www.broadinstitute.org/scientific-community/data
landing page: http://www.broadinstitute.org/
theme: T0015
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00387
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: Caenorhabditis elegans WWW Server

nbdc00387
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: Caenorhabditis elegans WWW Server

Caenorhabditis elegans WWW Server
type: Dataset
description: 線虫研究に関するポータルサイト、リンク集です。最新の論文、学会情報、解析ソフトウェア、C. elegans以外の線虫を紹介するページや、主要な線虫データベース、関連サイト、各研究室へのリンク集を提供しています。 なお、このサイトは他のサイトからリンクされている可能性があるため運用されていますが、情報は今後更新されません。最終更新日は2012年4月9日となっています。
language: en
publisher: Virginia Commonwealth University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://elegans.som.vcu.edu/
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
status: 運用終了
status: Closed @en

nbdc00388
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NCC-CIR

nbdc00388
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-08-01
source: Integbio Database Catalog
primary topic: NCC-CIR

NCC-CIR
type: Dataset
alternative: Cancer Image Reference Database @en
alternative: Cancer Image Reference Database (がん診療画像レファレンスデータベース)
description: がんの診療に有用な放射線、CT、MR、内視鏡、超音波、病理画像等の各種臨床画像・診断情報を提供する医師向けデータベースです。国立がん研究センター中央病院、東病院の症例を中心に、国立がん研究センター情報委員会が作成しています。診断や症例からの検索、部位やモダリティの指定による検索が可能です。
description: NCC-CIR is a database of cancer images for physicians. It contains medical images such as radiographs, MR, endoscopic images, ultrasonographs, pathological images, etc. which associated with diagnostic information. This database allows to search by case title, anatomical code, imaging modality and image findings through an easy-to-use interface. @en
language: ja
language: en
publisher: 国立研究開発法人国立がん研究センター
  type: Organization
  label: National Cancer Center @en
  address country: Japan @en
  address country: 日本
landing page: http://cir.ncc.go.jp/
landing page: http://cir.ncc.go.jp/en/index.html
theme: T0015
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00389
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-21
source: Integbio Database Catalog
primary topic: Cassava Full-Length cDNA Database

nbdc00389
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-21
source: Integbio Database Catalog
primary topic: Cassava Full-Length cDNA Database

Cassava Full-Length cDNA Database
type: Dataset
description: ESTのアセンブルによって得られたキャッサバの完全長cDNAデータベースです。キーワード検索やBLAST検索が可能です。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18096061
landing page: http://amber.gsc.riken.jp/cassava/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3983
theme: T0002
status: 運用終了
status: Closed @en

nbdc00390
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: BrainTx

nbdc00390
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: BrainTx

BrainTx
type: Dataset
alternative: Brain Transcriptome Database @en
description: BrainTx is a neuroinformatics database that contains gene expression information related to various stages and states of the brain. The database contains transcriptome information that can be explored in several ways. Users can search for genes of interest alone or in combination with stratifications for expression patterns, regions, brain specificity, and peak expression time. Data were collected from developing mouse brains. @en
description: 哺乳類の脳の発達に伴う時間的空間的な遺伝子発現の情報を視覚化し分析するための総合的な神経科学データベースです。遺伝子名、発現場所、発現タイミング、関連する遺伝子オントロジーの情報が、In situ hybridazation、RT-PCR、GeneChip、ディファレンシャル・ディスプレイ、cDNAマイクロアレイなどにより解析された実験データとともに収録されています。データは発現場所、遺伝子名、遺伝子ID、キーワードにより検索することが可能です。 このデータベースは、マウス小脳の生後発達ステージにおける時空間的遺伝子発現プロファイル（トランスクリプトーム）をまとめたデータベースCDT-DBから発展したものです。
language: en
publisher: 国立研究開発法人理化学研究所 和光研究所
  type: Organization
  label: RIKEN(The Institute of Physical and Chemical Research) Wako Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18603407
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15018818
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21243430
distribution: Distribution
  rights: ch1-3
  access URL: http://www.cdtdb.neuroinf.jp/CDT/Download.do
landing page: http://www.cdtdb.neuroinf.jp/CDT/Top.jsp
theme: T0021
theme: T0024
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: T0019
status: Active @en
status: 稼動中

nbdc00391
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CGD

nbdc00391
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CGD

CGD
type: Dataset
alternative: Candida Genome Database @en
description: ヒト病原体であるカンジダ菌（Candida albicans）のゲノム配列や、手作業でキュレートした遺伝子、タンパク質のアノテーション情報を提供しているデータベースです。カンジダ菌の代謝パスウエイ表示や実験データ解析、文献の全文検索も行えます。
description: This database is a genome database for Candida. It contains manually curated annotations on genes and proteins, as well as genomic sequences of the human pathogen Candida. Users can view the information of four strains of Candida, including C. albicans, C. dubliniensis, C. glabrata, and C. parapsilosis, which are metabolic pathways, experimental data, and full text of publications as well as genomic information. @en
language: en
publisher: Stanford University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22064862
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608216
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19577928
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17090582
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19808938
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19465905
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16879419
distribution: Distribution
  description: DownloadContents.shtml
  rights: DownloadContents.shtml
  access URL: http://www.candidagenome.org/DownloadContents.shtml
landing page: http://www.candidagenome.org
theme: T0021
theme: T0015
theme: T0026
theme: T0001
theme: T0007
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5476
theme: T0030
status: Active @en
status: 稼動中

nbdc00392
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-04-30
source: Integbio Database Catalog
primary topic: ChimerDB

nbdc00392
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-30
source: Integbio Database Catalog
primary topic: ChimerDB

ChimerDB
type: Dataset
description: ChimerDBは融合遺伝子の情報を集めたデータベースです。ChimerKB、ChimerPub、ChimerSeqの3つのモジュールで構成されています。 ChimerKBは、文献や公開されているリソースからのマニュアルキュレーションによって、実験に基づいた融合遺伝子についての、疾患との関係や配列等の知識情報を収録しています。ChimerPubは、PubMed Abstractからのテキストマイニングによって得られた融合遺伝子の情報を収録しており、テキストマイニングに基づいて要旨に注釈がつけられています。ChimerSeqは、シークエンスデータからの融合遺伝子候補を格納できるよう設計され、多様な癌患者を含むTCGAプロジェクトのRNAシーケンスデータから得られた融合遺伝子候補を収録しています。 遺伝子名、遺伝子ペア名、疾患名による検索や各種絞り込みのメニューがあります。また、データベーススキーマ、MySQLダンプファイル、エクセルフォーマットでのデータの一括ダウンロードが可能です。
description: ChimerDB is a comprehensive database of fusion genes. ChimerDB 3.0 is composed of three modules of ChimerKB, ChimerPub and ChimerSeq. ChimerKB represents a knowledgebase including 1066 fusion genes with manual curation that were compiled from public resources of fusion genes with experimental evidences. ChimerPub includes 2767 fusion genes obtained from text mining of PubMed abstracts. ChimerSeq module is designed to archive the fusion candidates from deep sequencing data. Users can search database by genes, gene pairs and diseases. The whole content of database can be downloaded as database schema, MySQL database dumpfiles and excel format data files. @en
language: en
publisher: Ewha Womans University
  type: Organization
  address country: Korea, Republic of @en
  address country: 大韓民国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/27899563
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19906715
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381848
distribution: Distribution
  description: mdownload.cdb
  access URL: http://203.255.191.229:8080/chimerdbv31/mdownload.cdb
landing page: http://203.255.191.229:8080/chimerdbv31/mindex.cdb
theme: T0021
theme: T0015
theme: T0001
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00393
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: Chloroplast Function Database II

nbdc00393
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: Chloroplast Function Database II

Chloroplast Function Database II
type: Dataset
alternative: A database of mutant phenotypes of nuclear-encoded chloroplast proteins
description: シロイヌナズナの葉緑体タンパク質を産生すると予想した遺伝子に、トランスポゾンまたはT-DNAを挿入して破壊したタグラインを大規模に収集し、植物体の形態変化を育成プレート上で観察・分類した結果、異常な表現型を示した変異体の原因遺伝子の情報と表現型の写真をデータベース化し、ウェブ上で自由に閲覧・検索可能にしました。
description: This is a database of Arabidopsis proteins targeted to chloroplasts initially identified by in silico prediction and confirmed using mutant strains. Users can search for genes or keywords of interest. Results include mutant phenotypes and, in many cases, TEM images. Data tables are available for download. @en
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/23230006
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19912565
landing page: http://rarge-v2.psc.riken.jp/chloroplast/
theme: T0016
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0029
theme: T0001
status: Active @en
status: 稼動中

nbdc00394
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CITRES

nbdc00394
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CITRES

CITRES
type: Dataset
alternative: Ciona Intestinalis Transgenic line RESources @en
description: カタユウレイボヤの系統、GFP導入ベクターによる蛍光発現画像や関連文献が掲載されています。各系統種やベクターの分与申し込みも可能になっています。
description: CITRES is a database of Ciona intestinalis resources maintained by University of Tsukuba. This database contains GFP expressed images of transgenic Ciona and lists of strains, DNA constructs and corresponding references. Users can search resources by expression stages, as well as keywords including vector names, created methods and expression patterns. @en
language: ja
language: en
publisher: 筑波大学 下田臨海実験センター
  type: Organization
  label: University of Tsukuba Shimoda Marine Research Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://marinebio.nbrp.jp/ciona/download/download.jsp
  access URL: http://marinebio.nbrp.jp/ciona/forwardToDownloadAction.do
landing page: http://marinebio.nbrp.jp/ciona/
theme: T0014
theme: T0024
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7719
theme: T0005
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00395
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CleanEx

nbdc00395
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CleanEx

CleanEx
type: Dataset
description: CleanEx is a database of gene expression related information in humans and in mice. Search options can be accessed directly by entering the gene ID/symbol, or the Target ID. A complete list of expression datasets, classified according to the organism, may also be retrieved.Datasets can be compared for common trends, genes and numerical results. This site was last updated on 11 Jun 2008. @en
description: ヒトとマウスの遺伝子発現データを収集・整備し、実験間で比較することができるデータベースです。キーワード検索が可能です。
language: en
publisher: Organization
  address country: スイス
  address country: Switzerland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681477
distribution: Distribution
  description: datasets.html
  rights: CleanEx manual.php
  access URL: ftp://ftp.epd.unil.ch/pub/databases/CleanEx/
landing page: http://cleanex.vital-it.ch/
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00396
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Clone DB

nbdc00396
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Clone DB

Clone DB
type: Dataset
description: This is an integrated database of libraries and clones. Information such as clone names, library information, nucleotide sequence information, and contact information of the clone distributer can be accessed here. The information can be browsed through the genome or the cell-based library. Clone DB was formerly known as NCBI Clone Registry. @en
description: 遺伝子クローンとライブラリの統合データベースです。クローン名とライブラリ情報、末端塩基配列情報、提供者の情報を提供しています。クローンの登録も行えます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: BatchRPSBOutputDownload
  description: README
  rights: disclaimer.html
  access URL: ftp://ftp.ncbi.nih.gov/repository/clone/
landing page: http://www.ncbi.nlm.nih.gov/clone/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00397
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-30
source: Integbio Database Catalog
primary topic: COGs

nbdc00397
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: COGs

COGs
type: Dataset
alternative: Clusters of Orthologous Groups of proteins @en
description: 全ゲノムにコードされているタンパク質配列の全てのオーソログを定義しているデータベースです。オーソログクラスターに含まれる生物種とタンパク質名、系統樹を収録しています。各クラスターは、個々のタンパクやパラログから構成されており、保存ドメインと一致します。前身のデータベースは「NCBI Clone Registry」です。
description: This database defines all orthologs of protein sequences coded by known genomes. The species name, protein name, and phylogenetic tree of orthologous clusters can be viewed through this site. Each cluster is comprised of individual proteins and its paralogs, matched to evolutionarily conserved molecular domains. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9381173
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12969510
distribution: Distribution
  rights: policies.shtml
  access URL: http://www.ncbi.nlm.nih.gov/COG
  access URL: http://www.ncbi.nlm.nih.gov/COG/
landing page: http://www.ncbi.nlm.nih.gov/COG
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1224
theme: T0021
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00398
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Comparasite

nbdc00398
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Comparasite

Comparasite
type: Dataset
alternative: Full-length cDNA Database @en
description: 7種類の寄生原虫（熱帯熱マラリア原虫、三日熱マラリア原虫、ネズミマラリア原虫2種、トキソプラズマ原虫、クリプトスポリジウム原虫、エキノコックス条虫）から全長cDNAライブラリを作成し、比較生物学的研究に利用するための比較ゲノムデータベースを作成しました。相同遺伝子群のクラスター化や、モチーフ、細胞膜貫通領域などの比較解析結果が含まれています。
description: Comparasite is a database of cDNA sequence information for seven parasitic species. In addition to sequences from individual species, the database contains homology information on genes from the seven species or subsets thereof. Bulk data is available for download. @en
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681428
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12703735
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17151081
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16902086
distribution: Distribution
  access URL: http://comparasite.hgc.jp/
landing page: http://comparasite.hgc.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5855
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5807
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5821
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6211
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5861
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5811
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
status: Active @en
status: 稼動中

nbdc00399
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: EBI Genomes Pages

nbdc00399
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: EBI Genomes Pages

EBI Genomes Pages
type: Dataset
description: The EMBL Database is a repository of entirely sequenced genomes. The database contains complete genome sequences of 146 archaea, 2,204 bacteria and 166 eukaryotic organisms. The repository also gives access to the DNA sequences of 57 archaeal viruses, 3,900 organellae, 1,178 phages, 1,018 plasmids, 56 viroids and 3,176 viruses. Text, advanced and sequence search options are available. @en
description: 完全ゲノム配列決定された生物のゲノム配列と、ゲノムにマッピングされたアノテーション情報を提供しています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://www.ebi.ac.uk/genomes
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/12884
theme: T0001
status: Active @en
status: 稼動中

nbdc00400
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: ConfC （アーカイブ）

nbdc00400
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-27
source: Integbio Database Catalog
primary topic: ConfC （アーカイブ）

ConfC （アーカイブ）
type: Dataset
title: ConfC (Archive) @en
alternative: Database of conformation changes in protein structures @en
description: タンパク質立体構造と機能の関係を動的に扱った研究は、実験的には数多く存在しますが、一般的なドラッグデザインではいまだにタンパク質を静的に扱っています。タンパク質の動的情報を得るには、実験もしくは分子動力学計算を行う必要がありますが、どちらも全てのタンパク質を網羅するには非常に膨大な時間と労力を必要とします。本データベースは、現在得られているタンパク質の立体構造からこの動的情報を抽出し、1）進化的構造変化、2）結合による構造変化、3）構造的揺らぎの3種類に分類しました。 産業技術総合研究所によるオリジナルサイト（http ://mbs.cbrc.jp/ConfC/）の運用は終了しました。ConfCのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
description: ConfC is a database of the structure of protein and how its conformation changes for various reasons. Three sub-databases are offered. The first contains changes in protein structure which took place over many years (evolution). The second describes changes that take place when proteins bind with one another. The third contains data on small fluctuations in the structure of different molecules in a sample of a protein. The purpose of this collection is to determine the effect mutations, deletions and insertions in the RNA sequence coding for the production of various proteins have upon the stability of its structure and how these affect its function. It also aims to determine whether structural changes may lead to the development of disease and to suggest ways in which these can be prevented or treated. A simple search function, where search parameters are entered, is available. @en
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README.html
  description: download.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/confc/download.html
  access URL: http://dbarchive.biosciencedbc.jp/en/confc/desc.html
landing page: http://dbarchive.biosciencedbc.jp/en/confc/desc.html
landing page: https://dbarchive.biosciencedbc.jp/jp/confc/desc.html
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00401
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CDD

nbdc00401
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CDD

CDD
type: Dataset
alternative: Conserved Domain Database @en
description: This is a collection of muliple sequence alignment models for ancient domains and full-length proteins, for the purpose of giving annotations for proteins. This database includes domain information curated by NCBI as well as those imported from the external sources; Pfam, SMART, COG, PRK, and TIGRFAM. @en
description: 分子進化的に保存されたタンパク質ドメインの配列アライメントとプロファイルを収録しています。Pfam、SMART、COG、PRK、TIGRFAMを情報源としています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17135202
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18984618
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15215404
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12368255
distribution: Distribution
  description: README
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/
landing page: http://www.ncbi.nlm.nih.gov/cdd
theme: T0021
theme: T0028
theme: T0029
theme: T0007
status: Active @en
status: 稼動中

nbdc00402
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: COPE

nbdc00402
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: COPE

COPE
type: Dataset
alternative: Cytokines & Cells Online Pathfinder Encyclopedia @en
description: COPE (Cytokines & Cells Online Pathfinder Encyclopedia) version 31.4 is a comprehensive database of cytokine-related information. The repository contains more than 31400 pages, upwards of 84890 cited references and 1137890+ internal hyperlinks. It contains 19 subgroups, from Angiogenesis, through Chemokines and Modulins to Virulence Factors, which were created in order to organize the vast amount of information in a searchable format. Information obtained from this database is free for use by academic institutions and non-profit organizations and it is wholly dependent on donations for its growth and maintenance. @en
description: サイトカインと細胞に関するオンライン辞典で、全てテキストで記載されています。アルファベット別にキーワードが整理されており、情報量が多いのが特徴です。 ※アカデミア、非営利組織のみフリーアクセスが可能です。
language: en
publisher: Organization
  address country: Germany @en
  address country: ドイツ
landing page: http://www.cells-talk.com
theme: T0007
theme: T0013
theme: T0030
status: Active @en
status: 稼動中

nbdc00403
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: CREATE portal （アーカイブ）

nbdc00403
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: CREATE portal （アーカイブ）

CREATE portal （アーカイブ）
type: Dataset
title: CREATE portal (Archive) @en
alternative: Collaboration of Regional Entities for the Advancement of Technological Excellence @en
description: CREATE is a database of sequence information for long cDNA clones from humans and mice, selected specifically because they were particularly large. This site serves as a portal to two other database functionalities (InGaP, for expression profiles, and InCeP, for pathway information), and two search functions, one for protein solubility and the other for subcellular localization as determined by transfected GFP-fusion proteins. @en
description: かずさマウスcDNAプロジェクトで得られたmKIAAクローンをベースにマイクロアレイを作成し、それを用いて計測した遺伝子発現が掲載されています。ectopic expressionはhybridizationにより計測されている模様（画像あり）。また、mKIAAをベースに作成された抗体を用いてwestern blot, immunohistochemical analysis, immunoprecipitation により計測されたタンパク質発現が掲載されています。（以上、InGaPデータベースについて） mKIAA発現タンパク質のタンパク質間相互作用をimmunoprecipitation + MS/MSで計測した結果が掲載されています。相互作用は検索／表示／ダウンロードできますが、表示には専用のソフトが必要になります。（以上、InCePデータベースについて） かずさディー・エヌ・エー研究所によるオリジナルサイト（https:// webcreate.kazusa.or.jp/create/） の運用は終了しました。CREATE portalのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://dbarchive.biosciencedbc.jp/jp/create-portal/desc.html
landing page: http://dbarchive.biosciencedbc.jp/en/create-portal/desc.html
theme: T0024
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
status: Active @en
status: 稼動中

nbdc00404
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CSML

nbdc00404
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CSML

CSML
type: Dataset
alternative: Cell System Markup Language
description: CSML is a resource for the annotation of biological pathways. The database focuses on a standardized system for denoting biological processes across several types of experiments. Several models are provided, as well as tools such as Cell Illustrator for annotating and representing original data. @en
description: CSMLは、細胞内の遺伝子制御ネットワーク、代謝ネットワーク、シグナル伝達系、細胞間の制御関係などを、システムダイナミクスを含めて記述するためのXMLフォーマットです。他の生体内パスウェイ記述 XMLフォーマットであるCellMLやSBML形式を包含できるよう定義されています。さらに、より厳密かつ効率的に他形式とのデータのやりとりを実現するため、CSMLは、OWL(Web Ontology Language)で記述したオントロジー言語CSO(Cell System Ontology)を利用して定義しています。CSOは、シグナル伝達経路や遺伝子制御ネットワークをダイナミクスを含めて知識表現するにおいて必須と考えられる語彙を定義しています。さらに、さまざまなアプリケーション間で視覚情報も標準化して相互にやりとりできるようにするため、CSOでは各語彙に対して標準のアイコンを定義しています。
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://www.csml.org/models/
landing page: http://www.csml.org/
theme: T0026
theme: T0019
theme: T0007
theme: T0013
status: Active @en
status: 稼動中

nbdc00405
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-03-18
source: Integbio Database Catalog
primary topic: CyanoClust database

nbdc00405
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-03-18
source: Integbio Database Catalog
primary topic: CyanoClust database

CyanoClust database
type: Dataset
alternative: Database of homologous proteins in cyanobacteria and plastids
description: CyanoClust is a database of homologous proteins in cyanobacteria, plastids, and bacteria. The database contains clustered homology groups with an emphasis on domain conservation across species. A phylogeny based on these groups is also provided. @en
description: 原核、真核両ドメインにまたがる広汎なタンパク質についての高品質な自動クラスタリングを行うソフトウェア「GCLUST」を用いて、10種のバクテリアと38種のシアノバクテリア、59種の葉緑体、1種類の有殻アメーバの全タンパク質のクラスタリングを行い、その結果を収録したデータベースです。系統プロファイリングによる検索が可能なことが特徴です。さらに、植物プロモータデータベースPPDBとの連携により、相同タンパク質のプロモータ構造を比較することができます。
language: en
publisher: 東京大学
  type: Organization
  label: The University of Tokyo @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20428314
landing page: http://gclust.c.u-tokyo.ac.jp/CyanoClust/
theme: T0021
theme: T0028
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1117
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/39717
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00406
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Cystic Fibrosis Mutation Database

nbdc00406
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Cystic Fibrosis Mutation Database

Cystic Fibrosis Mutation Database
type: Dataset
description: 嚢胞性線維症(CF;Cystic Fibrosis)の病因はCFTR（CF transmembrane conductance regulator、嚢胞性線維症膜コンダクタンス制御因子）遺伝子の変異にあります。このデータベースでは、嚢胞性線維症の遺伝研究のために、CFTR遺伝子の変異情報やデータを収集し、提供することを目的としています。既知のCFTR変異配列は全て収録されており、新規の変異情報をオンラインで登録することも可能です。
description: The Cystic Fibrosis Mutation Database (CFTR1) is a collection of mutations and sequence variants in the CFTR gene, which is related to the development and progress of the genetic disease Cystic Fibrosis. Currently the CFTR mutation database contains 1,935 listed mutations. Graphic, basic text and advanced text search options are available. A number of linked sites are available for more information on Cystic Fibrosis in general. @en
language: en
publisher: The Hospital for Sick Children (SickKids)
  type: Organization
  address country: カナダ
  address country: Canada @en
landing page: http://www.genet.sickkids.on.ca/cftr/app
theme: T0021
theme: T0015
theme: T0001
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00407
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DaphniaBASE

nbdc00407
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DaphniaBASE

DaphniaBASE
type: Dataset
description: DaphniaBASE is a database of water flea sequence data with clone and contig mapping information and a BLAST browser for searching sequences. gene homology tables and bulk data download are also available. @en
description: オオミジンコ（D. magna）のNIESクローンについてcDNAライブラリを作成し、EST解析を実施した結果が公開されています。クローン配列あるいはコンティグ配列、およびそれらに対するホモロジー検索の結果が利用可能です。
language: en
publisher: 自然科学研究機構 基礎生物学研究所
  type: Organization
  label: National Institute for Basic Biology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16094427
distribution: Distribution
  access URL: http://daphnia.nibb.ac.jp/down.html
landing page: http://daphnia.nibb.ac.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6669
theme: T0002
status: 休止
status: Inactive @en

nbdc00408
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: The Journal of Biological Databases and Curation

nbdc00408
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Journal of Biological Databases and Curation

The Journal of Biological Databases and Curation
type: Dataset
description: The Journal of Biological Databases and Curation is a database that provides information on database development. This repository gives guidance on methods of selecting, preserving and maintaining vast amounts of biological data in order to enable effective use of these archives at present and in the future. Direction is provided on how to apply the information found in this journal when new research projects are planned. Guidance is also given on organizing research results in an accessible format, for instance as a database, to make it available to other scientists for use in their research and to enable computational analysis of such results. New ideas on database development and user tutorials for database tools are welcomed. Keyword and Advanced search options are available. @en
description: Oxford University Pressから出版されているオープンアクセスの学術誌です。生物系のデータベース研究やキュレーションに関する新しい知見を提供することによって、データベース開発者とキュレータとユーザー間の橋渡しを強化することを目的としています。
language: en
publisher: Oxford University Press
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://database.oxfordjournals.org/
theme: T0030
status: Active @en
status: 稼動中

nbdc00410
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Database of genomes and transcriptional regulations for filamentous fungi

nbdc00410
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Database of genomes and transcriptional regulations for filamentous fungi

Database of genomes and transcriptional regulations for filamentous fungi
type: Dataset
description: 糸状菌の一種である麹菌(Aspergillus oryzae)について、塩基配列および発現制御などの研究に役立つ情報を集めたサイトです。 Aspergillus oryzae EST データベース：麹菌EST・ゲノム解析コンソーシアムにおいて、富栄養培地および貧栄養培地で培養した麹菌菌体よりRNAを調製し、プラスミドによるクローンを無作為にシングルパスのシークエンスを行ないました。FastaAによる相同性検索ができます。 他にAspergillus oryzae 転写制御データベース、Aspergillus nidulans コスミドシークエンスなどがあります。
description: This database aims to provide the fermentation industry (and namely that of sake production) with applicable information about the filamentous fungus Aspergillus oryzae. It consists of sequenced cDNA clones of the Aspergillus oryzae. A FastA search function is available. The owners of the database are looking into building it out further by adding information about transcripts of the above fungus. @en
language: ja
language: en
publisher: 独立行政法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://riodb.ibase.aist.go.jp/ffdb/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5062
theme: T0005
theme: T0002
status: 運用終了
status: Closed @en

nbdc00411
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-02-16
source: Integbio Database Catalog
primary topic: DB-SPIRE（アーカイブ）

nbdc00411
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-16
source: Integbio Database Catalog
primary topic: DB-SPIRE（アーカイブ）

DB-SPIRE（アーカイブ）
type: Dataset
title: DB-SPIRE (Archive) @en
alternative: Database for Structure-based Protein Interaction Research
description: This database indicates the interaction sites on proteins and shows how the structures of these sites change when the proteins interact with other substances. This information enables the researcher to determine how these structural changes affect its function. The search function offers direct access to the Protein Data Bank and also to the PROSITE database of proteins. It used to offer access to the BLOCKS database of protein and nucleotide sequence classification, but this last database is no longer updated and may prove unreliable. @en
description: 実験的または配列解析（ホモロジー検索とマルチプルアライメント）によって同定されたアミノ酸配列モチーフのタンパク質立体構造における位置を収録しています。アミノ酸配列モチーフデータベースとしてPROSITEとBLOCKSの2種類を用い、タンパク質立体構造データベースとしてProtein Data Bank (PDB)を用いています。 産業技術総合研究所によるオリジナルサイト（http:// mbs.cbrc.jp/DB-SPIRE/ ）の運用は終了しました。DB-SPIREのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README.html
  description: README e.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/dbspire/download.html
  access URL: https://dbarchive.biosciencedbc.jp/en/dbspire/download.html
landing page: https://dbarchive.biosciencedbc.jp/en/dbspire/desc.html
landing page: https://dbarchive.biosciencedbc.jp/jp/dbspire/desc.html
theme: T0021
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00412
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: dbCFC

nbdc00412
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: dbCFC

dbCFC
type: Dataset
alternative: Cytokine Family Database @en
description: NCBI GenBankに登録されているヒトサイトカインのEST配列を収集したデータベースです。EST配列は、サイトカインファミリーごと、遺伝子ごとに整理されており、遺伝子、cDNA、タンパク質に関する情報として、各種公開データベースのリンクが記載されています。現在は提供を終了しています。
description: This database contains a collection of expressed sequence tag (EST) sequences of human cytokines from GenBank's database at the National Center for Biotechnology Information (NCBI). EST sequences are grouped by cytokine family and by gene, and links to various open databases are provided for each gene, cDNA sequence, or protein. This site is currently closed. @en
language: en
publisher: 熊本大学 大学院医学教育部
  type: Organization
  label: Kumamoto University Graduate School of Medical Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://cytokine.medic.kumamoto-u.ac.jp
theme: T0021
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 運用終了
status: Closed @en

nbdc00413
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: dbEST

nbdc00413
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: dbEST

dbEST
type: Dataset
alternative: Expressed Sequence Tags database
description: This is one of the world's largest repository for EST with information on multiple species. Users can also submit their own data. @en
description: 各生物種のEST情報が得られる世界最大規模のESTレポジトリです。データの登録も可能です。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8401577
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/repository/dbEST/
landing page: https://www.ncbi.nlm.nih.gov/genbank/dbest/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1
theme: T0002
status: Active @en
status: 稼動中

nbdc00414
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: dbGaP

nbdc00414
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: dbGaP

dbGaP
type: Dataset
alternative: Genotypes and Phenotypes
description: ゲノムワイド関連解析(GWAS)、メディカルシーケンシング、分子診断アッセイを含む、遺伝子型と表現型の関連研究のアーカイブです。登録されているデータセットは、公開データとコントロールデータに分けられており、コントロールデータを入手する場合は申請手続きが必要です。
description: This is a database for research on genotypes and phenotypes in humans, including genome-wide association studies (GWAS), medical sequencing, and molecular diagnostic assays. The dataset is classified into public data and controlled-access data, and an application procedure is required for access to controlled-access data. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: about.html
  access URL: ftp://ftp.ncbi.nlm.nih.gov/dbgap/
landing page: http://www.ncbi.nlm.nih.gov/gap
theme: T0016
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00415
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBH2H

nbdc00415
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DBH2H

DBH2H
type: Dataset
alternative: Head-to-head Gene Database @en
description: ヒト、マウス、ラット、ニワトリ、トラフグのhead-to-head (h2h)遺伝子を収集したデータベースです。ヒト、マウス、ラット、ニワトリ、トラフグにおいて、h2h遺伝子のペアは転写開始点が1kb以内に存在することが知られています。H2h領域では、CpGアイランドやSNPs、転写因子結合サイトなどの配列的特徴が見出されています。さらに、h2hペア遺伝子は、発現や機能に相関性が見られます。このデータベースでは、h2h遺伝子ペアについて、プロモーター領域に存在するCpGアイランドやSNPの情報、遺伝子発現の相関、OMIMやGene Onotology、KEGG由来の機能情報を提供しています。
description: DBH2H is a database of head-to-head oriented genes across multiple species, with information on all genes transcribed in opposing directions with start sites within 1kb of each other in several eukaryotes. Users can browse, search, and BLAST the database. Data is available for download. @en
language: en
publisher: Shanghai Center for Bioinformation Technology
  type: Organization
  address country: 中国
  address country: China @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16839196
distribution: Distribution
  access URL: ftp://down:lsbi@lifecenter.sgst.cn:2121/h2h/h2h.zip
landing page: http://lifecenter.sgst.cn/h2h/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/31033
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0024
status: 休止
status: Inactive @en

nbdc00416
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBSB

nbdc00416
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: DBSB

DBSB
type: Dataset
alternative: DataBase for Systems Biology
description: DBSB is a listing of systems biology studies. Users can browse links to papers, figures, and data tables of several systems-level projects, with a focus on circadian rhythm and DNA methylation. @en
description: DBSBはゲノムワイドな情報を利用した複雑な生命現象を解析するためのプラットフォームを提供します。サーカディアンリズムとホメオスタシス、細胞周期と細胞分裂、組織特性と区別、光応答とシグナル伝達などが重点分野ですが、これらに限らず広い分野に渡っています。
language: en
publisher: 国立研究開発法人理化学研究所 神戸研究所
  type: Organization
  label: RIKEN(The Institute of Physical and Chemical Research) Kobe Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11854264
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12151263
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15665827
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11403560
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12152080
landing page: http://sirius.cdb.riken.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
status: 休止
status: Inactive @en

nbdc00417
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: dbSTS

nbdc00417
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: dbSTS

dbSTS
type: Dataset
alternative: database of Sequence Tagged Sites
description: This is a database of sequence tagged sites those are sequence data for short genomic sequences used as a landmark in the genome. This database was already retired, and in this page, users can find the information about how to search and use those sequences. @en
description: Sequence Tagged Site(STS)を収録したデータベースです。STSはゲノムの位置を特定できる短い（約200-500bp）配列です。ゲノムの物理地図を作成する際の目印になります。dbSTSに登録されている配列はFTPサイトから入手できます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/2781285
distribution: Distribution
  description: README
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/repository/dbSTS/
landing page: http://www.ncbi.nlm.nih.gov/projects/dbSTS/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1
theme: T0001
status: 運用終了
status: Closed @en

nbdc00418
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DGSP

nbdc00418
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DGSP

DGSP
type: Dataset
alternative: DROSOPHILA GENE SEARCH PROJECT @en
description: ショウジョウバエのGSベクター挿入系統データベースです。個々の系統の情報やベクター隣接配列、GAL4存在下で強制発現される遺伝子および表現型情報が登録されています。 GS系統番号、遺伝子名、染色体領域名で検索可能です。
description: DGSP is a database of Drosophila insertion mutant lines. The database contains information on over 20,000 insertion strains that were used to map genes. A genome browser and search function are provided, and strains can be requested. @en
language: en
publisher: 首都大学東京
  type: Organization
  label: Tokyo Metropolitan University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9927464
landing page: http://gsdb.biol.se.tmu.ac.jp/~dclust/
theme: T0016
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0024
theme: T0029
theme: T0001
theme: T0005
theme: T0017
theme: T0021
status: 休止
status: Inactive @en

nbdc00419
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: Dicty_cDB （アーカイブ）

nbdc00419
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: Dicty_cDB （アーカイブ）

Dicty_cDB （アーカイブ）
type: Dataset
title: Dicty_cDB (Archive) @en
alternative: Dictyostelium cDNA Database
description: 社会性アメーバとして知られる細胞性粘菌Dictyostelium discoideumのEST解析によって得られた配列一次情報に、さまざまな二次情報を追加して公開している遺伝子情報データベースです。本データベースは、細胞性粘菌Dictyostelium discoideumのcDNA大規模解析（Dictyostelium cDNA Project in Japan）の成果です。 筑波大学によるオリジナルサイトの運用は終了しました。引き続き生命科学系データベースアーカイブからDicty_cDBをご利用いただけます。
description: Dicty_cDB is a database of Dictyostelium discoideum sequencing data. The database contains information on sequenced clones and contigs obtained by EST analysis. Keyword, pattern, homology, and BLAST searches are supported. The original site was retired, and it is available in NBDC Life Science Database Archive. @en
language: en
publisher: 筑波大学大学院 生命環境科学研究科
  type: Organization
  label: University of Tsukuba Graduate School of Life and Environmental Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11911458
distribution: Distribution
  description: README e.html
  rights: lic.html
  access URL: http://dbarchive.biosciencedbc.jp/en/dicty-cdb/download.html
landing page: http://dbarchive.biosciencedbc.jp/jp/dicty-cdb/desc.html
landing page: http://dbarchive.biosciencedbc.jp/en/dicty-cdb/desc.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/44689
theme: T0007
theme: T0002
status: Active @en
status: 稼動中

nbdc00420
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: dictyBase

nbdc00420
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: dictyBase

dictyBase
type: Dataset
description: This site contains information related to the ameboid protozoan Dictyostelium discoideum, including information of genomes and genes, conferences, experimental protocols, tools for analysis, and distribution of strains. @en
description: 細胞性粘菌研究の総合サイトです。ゲノムや遺伝子情報、学会情報、実験プロトコル、解析ツール等の提供と、株の配布を行っています。
language: en
publisher: Northwestern University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21087999
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16957284
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18974179
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681427
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381903
distribution: Distribution
  access URL: http://dictybase.org/Downloads/
landing page: http://dictybase.org/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/44689
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5786
theme: T0029
theme: T0001
theme: T0007
theme: T0005
theme: T0017
theme: T0018
theme: T0030
theme: T0021
theme: T0019
status: Active @en
status: 稼動中

nbdc00421
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DiProDB

nbdc00421
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DiProDB

DiProDB
type: Dataset
alternative: Dinucleotide Property Database
description: DNAやRNAのジヌクレオチド配列の熱力学的特性や立体配座特性を収集したデータベースです。Twist, Bend, Roll(DNA-protein complex), Slide (DNA-protein complex)など125の特性について、全ジヌクレオチドの値と、報告された文献や核酸のタイプ等が表示されます。
description: This database is a collection of thermodynamic properties and structural characteristics of DNA and RNA dinucleotide. It contains 125 published properties, such as twists, bends, rolls (in DNA-protein complex), and slides (in DNA-protein complex). @en
language: en
publisher: Fritz Lipmann Institute - Leibniz Institute for Age Research
  type: Organization
  label: FLI - Leibniz Institute for Age Research @en
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18805906
landing page: http://diprodb.fli-leibniz.de
theme: T0021
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00422
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Distribution of Human cDNA Clones

nbdc00422
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-16
source: Integbio Database Catalog
primary topic: Distribution of Human cDNA Clones

Distribution of Human cDNA Clones
type: Dataset
description: 独立行政法人 製品評価技術基盤機構バイオテクノロジーセンター：NBRC (NITE Biological Resource Center)で分譲しているヒト完全長cDNAクローンを検索できます。クローン名検索、キーワード検索、BLAST検索が可能です。
description: Human cDNA Clones is a database of human cDNA clones for which a copy can be distributed by Biological Resource Center (NBRC), NITE. This database contains Human cDNA clones from Human Gateway? Entry Clones, Full-length Human cDNA Clones and Splicing-Variant Human cDNA Clones. Users are able to search clones using sequence ID, keywords and sequence. NBRC is distributing copies of the human cDNA clones to both academia and industries under their distribution policy. @en
language: ja
language: en
publisher: 独立行政法人製品評価技術基盤機構
  type: Organization
  label: National Institute of Technology and Evaluation @en
  address country: Japan @en
  address country: 日本
landing page: http://www.nbrc.nite.go.jp/hflcdna/cgi-bin/e/Clone_Search.cgi
landing page: http://www.nbrc.nite.go.jp/hflcdna/cgi-bin/Clone_Search.cgi
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: Active @en
status: 稼動中

nbdc00423
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DJI

nbdc00423
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DJI

DJI
type: Dataset
alternative: Dictionary of Japanese Insect Names
description: DJI is a database of Japanese insects names treating all the insect species or subspecies recorded from Japan. DJI provides two methods of searching. First, users can search Japanese names from scientific ones, then search results show the Japanese names and scientific names (family only, or genus and species). Second, users can search scientific names from Japanese ones, then search results show scientific names (family, genus and species) and the Japanese names. @en
description: 日本産の全昆虫について、和名または学名を入力することによって、その文字列を含む昆虫のリストを学名と和名で表示する辞書です。
language: ja
language: en
publisher: 九州大学 大学院農学研究院
  type: Organization
  label: Kyushu University Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/dji/index-j.html
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/dji/
theme: T0014
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6960
status: Active @en
status: 稼動中

nbdc00424
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: Pyrococcus DNABook

nbdc00424
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: Pyrococcus DNABook

Pyrococcus DNABook
type: Dataset
description: 超好熱古細菌のDNAを収録したDNAブックです。
language: ja
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
landing page: http://gerg03.gsc.riken.jp/DNABook_DB/VIEW/Book_Top.php?BOOK_ID=BOOK_6
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2260
theme: T0005
theme: T0017
status: 運用終了
status: Closed @en

nbdc00425
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DPInteract

nbdc00425
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DPInteract

DPInteract
type: Dataset
description: This is a database for DNA-protein interactions in E.coli. It collects sequence-specific DNA-binding proteins and sequences of the binding sites. They compiled DNA-binding site matrices and predict binding sites in the genome using the matrices. @en
description: 大腸菌ゲノムのタンパク質結合サイトを収集したデータベースです。大腸菌の55種類のDNA結合タンパク質と結合サイトを基に認識マトリクスを構築し、それを用いて予測したサイトも登録されています。 ※各遺伝子の詳細ページが表示されません。
language: en
publisher: Harvard University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://arep.med.harvard.edu/dpinteract
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0007
theme: T0005
status: Active @en
status: 稼動中

nbdc00426
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-01-29
source: Integbio Database Catalog
primary topic: Dr. Zompo (Data Repository for Seagrass ESTs including: Posidonia oceanica, Zostera marina)

nbdc00426
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: Dr. Zompo (Data Repository for Seagrass ESTs including: Posidonia oceanica, Zostera marina)

Dr. Zompo (Data Repository for Seagrass ESTs including: Posidonia oceanica, Zostera marina)
type: Dataset
description: 2種類の海藻（地中海ポシドニア、アマモ）のEST配列を提供しているデータベースです。地中海ポシドニア9,412配列(3,387遺伝子）、およびアマモ5,185配列（1,219遺伝子）が収録されています。各エントリーには、Swiss-Protの相同性検索結果、Gene OntologyやPfam、KEGG検索結果、配列情報等が含まれています。
description: This is a database of EST sequences for two species of seaweed, the Mediterranean Posidonia and the Zostera. Each entry contains information on Swiss-Prot homology search results, gene Ontology and Pfam, KEGG search results, and sequence information. @en
language: en
publisher: University of Munster
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18239962
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20157482
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21226908
distribution: Distribution
  access URL: http://drzompo.uni-muenster.de/downloads
landing page: http://drzompo.uni-muenster.de/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/29655
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/55489
theme: T0002
status: Suspended @en
status: 公開停止中

nbdc00427
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-02-26
source: Integbio Database Catalog
primary topic: DTA

nbdc00427
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-26
source: Integbio Database Catalog
primary topic: DTA

DTA
type: Dataset
alternative: DDBJ Trace Archive
description: DTA is a repository of single-pass reads obtained from large-scale sequencing projects using capillary sequencers. DTA contains trace data, which consists of DNA sequence chromatograms (sequence data), base calls, and quality estimates for single-pass reads. DTA is maintained by DDBJ (DNA Data Bank of Japan), the member of INSDC in Japan, and DDBJ collects trace data in cooperation with the other members of INSDC. Users can search trace data at the DTA Search or NCBI Trace Archive, and download them from the DTA FTP site. @en
description: 大規模配列決定プロジェクトからのシングルパスリードの DNAクロマトグラム、決定した配列、クオリティ値のアーカイブです。 DTA は International Nucleotide Sequence Database Collaboration (INSDC) のメンバーであり、NCBI Trace Archive と EBI Trace Archive との国際協力の下、データを収集しています。 DTA に登録されたデータは NCBI Trace Archive にアップロードされます。公開されたデータは Trace Archive で検索、取得することができます。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22110025
distribution: Distribution
  description: submission.html
  rights: index.shtml
  access URL: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dta/
landing page: https://www.ddbj.nig.ac.jp/dta/index-e.html
landing page: https://www.ddbj.nig.ac.jp/dta/index.html
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
theme: T0005
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00428
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EBI

nbdc00428
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EBI

EBI
type: Dataset
alternative: European Bioinformatics Institute
description: EBI is the website of the European Bioinformatics Institute. The site contains data from EBI experiments and basic research programs as well as information on training and links to resources affiliated with the Institute. News releases and links to upcoming conferences are also provided. @en
description: EBI（欧州バイオインフォマティクス研究所）は、ケンブリッジ郊外のウェルカムトラスト・ゲノムキャンパス内に設置されているバイオインフォマティクスの学術的研究機関です。EMBL（欧州分子生物学研究所）の一部門で、1992年に設立されました。バイオインフォマティクス研究の推進、フリーで入手可能なデータやバイオインフォマティクスサービスの整備と提供、教育活動等を目的としています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19934258
landing page: http://www.ebi.ac.uk
theme: T0031
theme: T0024
theme: T0022
theme: T0026
theme: T0001
theme: T0007
theme: T0011
status: Active @en
status: 稼動中

nbdc00429
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Ecgene

nbdc00429
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Ecgene

Ecgene
type: Dataset
alternative: Genome Annotation for Alternative Splicing
description: 選択的スプライシングを考慮した遺伝子推定プログラムECgeneをゲノムに適用してアノテーションしたデータベースです。生物種はヒト、マウス、ラットを対象としています。遺伝子を示すビューワーと詳細情報として、転写産物、ドメイン、モチーフ、遺伝子発現情報を閲覧可能です。
description: ECgene is a database that provides annotation for alternative splicing of the genome. Statistics on total gene number (spliced and unspliced), number of transcripts, AS genes and isoforms are displayed in a searchable format for the human genome and that of 8 other animal species. Tables with information for each species can be browsed and downloaded. @en
language: en
publisher: Ewha Womans University
  type: Organization
  address country: Korea, Republic of @en
  address country: 大韓民国
landing page: http://genome.ewha.ac.kr/ECgene/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: 休止
status: Inactive @en

nbdc00430
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ECRbase

nbdc00430
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ECRbase

ECRbase
type: Dataset
description: ECRbase is a database of regulatory conserved sequences. The database contains sections on conserved regions across multiple genome comparisons, computationally and experimentally determined promoter locations, chromosome synteny maps, and transcription factor binding sequences. Data are available for download as gzip'd text tables. @en
description: 脊椎動物ゲノム間の進化的保存領域、RefSeqとUCSC既知遺伝子のプロモーター領域、ゲノム間のシンテニー、プロモーター領域および進化的保存領域の転写因子結合サイトについて、ダウンロード形式でファイルを提供しています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17090579
distribution: Distribution
  description: ecrs.php
  description: synteny.php
  description: promoters.php
  access URL: http://ecrbase.dcode.org/
  access URL: http://ecrbase.dcode.org/ecrs.php
  access URL: http://ecrbase.dcode.org/synteny.php
  access URL: http://ecrbase.dcode.org/promoters.php
landing page: http://ecrbase.dcode.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9265
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/47144
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8364
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/31033
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: Active @en
status: 稼動中

nbdc00431
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EMGLib

nbdc00431
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EMGLib

EMGLib
type: Dataset
alternative: Enhanced Microbial Genomes Library @en
description: 原核生物（真正細菌、古細菌）と酵母の完全ゲノム配列を提供しています。GenBankやEMBL、RefSeqなどのデータベース名を選択し、キーワードや配列名、アクセッション番号で検索します。
description: EMBGLib is a database of completely sequenced microbial genomes. The database contains genomes from the NCBI GenBank which have been further processed and annotated. The database can be searched by keyword, sequence name, or accession number, or by more advanced web server query. Sequences of interest can also be downloaded by HTTP or FTP. @en
language: en
publisher: Universite Claude Bernard Lyon 1
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592183
landing page: http://pbil.univ-lyon1.fr/emglib/emglib.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4890
theme: T0001
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: 休止
status: Inactive @en

nbdc00432
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ENA

nbdc00432
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ENA

ENA
type: Dataset
alternative: European Nucleotide Archive
description: ENA is a database of data from global nucleotide sequencing projects. The database contains information on projects from raw phases trhough complete functional annotation. Users can search by keyword or DNA sequence. Bulk data is available for download. @en
description: 次世代シーケンサーによる配列データのレポジトリサイトです。サンプル、実験情報、機器情報、データとしては配列トレース、配列、クオリティ値を含み、アセンブル、マッピング、機能アノテーションも提供しています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20972220
distribution: Distribution
  description: formats
  description: FT current.html
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/ena/about/data_download
landing page: http://www.ebi.ac.uk/ena/
theme: T0021
theme: T0001
theme: T0005
theme: T0002
theme: T0018
theme: T0003
status: Active @en
status: 稼動中

nbdc00433
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EnsemblBacteria

nbdc00433
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EnsemblBacteria

EnsemblBacteria
type: Dataset
description: EnsemblBacteria is a database of thousands of bacterial genomes. The database can be searched by gene, genome, or BLAST, and several tools are available. Data and ensembl software can also be downloaded. @en
description: ゲノム解読された真正細菌、古細菌を対象として自動アノテーションを行い、その結果をゲノムビューワやデータベースとして公開しているプロジェクトです。EMBL-EBIとSanger Centreが共同で進めています。
language: en
publisher: Ensembl Project
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19884133
distribution: Distribution
  rights: legal
  access URL: http://bacteria.ensembl.org/downloads.html
landing page: http://bacteria.ensembl.org/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0001
status: Active @en
status: 稼動中

nbdc00434
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EnsemblFungi

nbdc00434
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EnsemblFungi

EnsemblFungi
type: Dataset
description: EnsemblFungi is a database of fungal genomes. The database contains sequences from dozens of fungal species which can be searched by gene, genome, or BLAST. Tools for processing data are also available, as are bulk data downloads. @en
description: ゲノム解読された菌類を対象として自動アノテーションを行い、その結果をゲノムビューワやデータベースとして公開しているプロジェクトです。EMBL-EBIとSanger Centreが共同で進めています。
language: en
publisher: Ensembl Project
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19884133
distribution: Distribution
  description: ftp
  rights: legal
  access URL: http://fungi.ensembl.org/info/website/ftp/index.html
landing page: http://fungi.ensembl.org/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0021
theme: T0001
status: Active @en
status: 稼動中

nbdc00435
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EnsemblMetazoa

nbdc00435
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EnsemblMetazoa

EnsemblMetazoa
type: Dataset
description: EnsemblMetazoa is a database of metazoan genomes. The database contains sequences from dozens of metazoa which can be searched by gene, genome, or BLAST. Tools for processing data are also available, as are bulk data downloads. @en
description: ゲノム解読された無脊椎動物を対象として自動アノテーションを行い、その結果をゲノムビューワやデータベースとして公開しているプロジェクトです。EMBL-EBIとSanger Centreが共同で進めています。
language: en
publisher: Ensembl Project
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19884133
distribution: Distribution
  description: ftp
  rights: legal
  access URL: http://metazoa.ensembl.org/info/website/ftp/index.html
landing page: http://metazoa.ensembl.org/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6231
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7147
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6843
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7254
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/85819
status: Active @en
status: 稼動中

nbdc00436
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EnsemblPlants

nbdc00436
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EnsemblPlants

EnsemblPlants
type: Dataset
description: EnsemblPlants is a database of plant genomes. The database contains sequences from dozens of plants which can be searched by gene, genome, or BLAST. Tools for processing data are also available, as are bulk data downloads. @en
description: ゲノム解読された植物を対象として自動アノテーションを行い、その結果をゲノムビューワやデータベースとして公開しているプロジェクトです。EMBL-EBIとSanger Centreが共同で進めています。
language: en
publisher: Ensembl Project
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19884133
distribution: Distribution
  description: ftp
  rights: legal
  access URL: http://plants.ensembl.org/info/website/ftp/index.html
landing page: http://plants.ensembl.org/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0001
status: Active @en
status: 稼動中

nbdc00437
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: EnsemblProtists

nbdc00437
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: EnsemblProtists

EnsemblProtists
type: Dataset
description: EnsemblProtists is a database of protist genomes. The database contains sequences from dozens of protists which can be searched by gene, genome, or BLAST. Tools for processing data are also available, as are bulk data downloads. @en
description: ゲノム解読された原生生物を対象として自動アノテーションを行い、その結果をゲノムビューワやデータベースとして公開しているプロジェクトです。EMBL-EBIとSanger Centreが共同で進めています。
language: en
publisher: Ensembl Project
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19884133
distribution: Distribution
  description: ftp
  rights: legal
  access URL: http://protists.ensembl.org/info/website/ftp/index.html
landing page: http://protists.ensembl.org/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/554915
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/44689
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33634
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/43769
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2830
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/28009
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33630
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/207245
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4787
status: Active @en
status: 稼動中

nbdc00438
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EPD

nbdc00438
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EPD

EPD
type: Dataset
alternative: The Eukaryotic Promoter Database
description: 転写開始点が決定されている真核生物のポリメラーゼIIプロモーターについての注釈付きデータベースです。各エントリーの注釈には、転写開始部位のマッピング実験に関する記述、外部データベースへのリンク、文献情報などが含まれています。配列比較用として、意味のあるプロモーターサブセットの動的抽出が容易となるように設計されています。
description: EPD is a satabase of unique gene promoters. The database contains non-redundant sequences of promoters for genes transcribed by RNA polymerase II. Users can search the database, browse promoter elements, or download sequences via HTTP or FTP. @en
language: en
publisher: Swiss Institute of Bioinformatics
  type: Organization
  address country: スイス
  address country: Switzerland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592254
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399872
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847211
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752326
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381980
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681364
distribution: Distribution
  description: epd126.usr
  rights: EPD Copyright
  access URL: ftp://ccg.vital-it.ch/epdnew/
landing page: http://epd.vital-it.ch/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0001
status: Active @en
status: 稼動中

nbdc00439
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EpoDB

nbdc00439
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EpoDB

EpoDB
type: Dataset
alternative: Erythropoiesis database
description: EpoDB is a database about genes which relate to vertebrate red blood cells. It contains DNA sequence, structural features, protein information, gene expression information and transcription factor binding sites. Information about genes is brought together from different sources. This database is able to return the same specific region of sequence from a number of related genes for further analysis. Moreover, it provides visualization tools that makes it easy and efficient to interpret the information in EpoDB or from the analyses. @en
description: 脊椎動物の赤血球細胞（赤血球産生）関連遺伝子を収集したデータベースです。各エントリーにはDNA配列、構造、タンパク情報、遺伝子発現情報、転写因子結合サイトが含まれています。 ※現在、検索時にInternal Server Errorとなり、検索結果が表示されません。
language: en
publisher: University of Pennsylvania
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.cbil.upenn.edu/EpoDB/release/version_2.2/epodb.html
theme: T0021
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7742
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00440
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: eSOL

nbdc00440
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: eSOL

eSOL
type: Dataset
alternative: Solubility database of all E.coli proteins @en
description: eSOL is a database about the solubility of entire ensemble proteins of E.coli individually synthesized by PURE system that is chaperon free. This database provides the solubility of proteins which synthesized from ASKA library (A complete Set of E.coli K-12 ORF Archive). Entries can be searched on keywords containing JW ID, ECK number, B number, gene name, Locus name, Synonyms of locus, gene product description, SCOP assignment or browsed on gene name. Users can download expression data, un-expression data, and chaperone data. @en
description: 再構築型の試験管内タンパク質合成系を用いて、大腸菌の全てのタンパク質を発現させた際の凝集の度合い(可溶率)と合成量を収録したデータベースです。遺伝子名またはクローンID(JW ID)から各タンパク質の実験結果を検索することができます。全データのダウンロードも可能です。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19251648
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22615364
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11479568
distribution: Distribution
  access URL: http://www.tanpaku.org/tp-esol/download.php
  access URL: http://www.tanpaku.org/tp-esol/download.php?lang=en
landing page: http://www.tanpaku.org/tp-esol/index.php?lang=en
landing page: http://www.tanpaku.org/tp-esol/index.php?lang=ja
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: T0024
theme: T0007
status: Active @en
status: 稼動中

nbdc00441
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EST (A collection of short single-read transcript sequences from GenBank)

nbdc00441
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EST (A collection of short single-read transcript sequences from GenBank)

EST (A collection of short single-read transcript sequences from GenBank)
type: Dataset
description: EST is a database of short single-read transcript sequences. The database contains thousands of sequences determined by traditional sequencing of gene transcripts in dozens of organisms. The database can be searched by keyword or BLAST. Users can submit sequences or download data via FTP. @en
description: GenBankに登録されている、転写産物の一部の短い配列（EST）を収集したデータベースです。各エントリーにつき、EST名、クローン情報、プライマー情報、配列、ライブラリー情報、文献情報が表示されます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/genbank/
landing page: http://www.ncbi.nlm.nih.gov/nucest
theme: T0021
theme: T0002
status: Active @en
status: 稼動中

nbdc00442
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ESTHER

nbdc00442
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ESTHER

ESTHER
type: Dataset
alternative: ESTerases and alpha/beta Hydrolase Enzymes and Relatives @en
description: α/β‐ヒドロラーゼ折畳みスーパーファミリーのデータベースです。タンパク質のα/β‐ヒドロラーゼ折畳みは、α/β/αサンドイッチ構造を形成する5～8本鎖のβシートコアによって特徴づけられます。共通の祖先から派生したスーパーファミリーのメンバーは、広範囲の基質特異性をもつ加水分解酵素や、触媒活性を持たない他のタンパク質に分かれました。ESTHERデータベースは、スーパーファミリーの遺伝子やタンパク質の配列、生化学的、薬理学的、構造的データに関する全ての情報を論文から収集し、注釈をつけています。これらの情報を連結してファミリー内における構造-機能の関係性を示したり、ファミリーのメンバーと関連のあるヒト疾患情報も提供しています。
description: ESTHER is a database of hydrolase family enzymes. The database contains information on hydrolases and related enzymes from over 5000 species including sequences, structures, mutations, and disease associations. Users can search the database or use various tools to compare and analyze hydrolases. @en
language: en
publisher: Institut national de la recherche agronomique
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681380
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21933125
landing page: http://bioweb.ensam.inra.fr/ESTHER/general?what=index
theme: T0021
theme: T0015
theme: T0023
theme: T0022
theme: T0026
theme: T0007
theme: T0006
theme: T0030
theme: T0028
status: Active @en
status: 稼動中

nbdc00443
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Evola

nbdc00443
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Evola

Evola
type: Dataset
alternative: Evolutionary annotation database @en
description: This is a database of corresponding genes (orthologs) linking humans with fourteen other vertebrates. Similarities in sequence of the corresponding genomes and in the amino acids these sequences facilitated production of were compared. Different splicing variants were also included in the comparison. Outcomes of these comparisons were analyzed to predict evolutionary links between the species and is displayed in a tree format. Search by keyword, accession number or gene symbol is possible. @en
description: H-InvDBで定義されたヒト遺伝子の分子進化データベースとして、ヒト代表配列（1配列/遺伝子座）と14種の脊椎動物とのオーソログ情報を提供しています。ヒトと各生物種間でスプライシングバリアントを比較することもできます。EvolaへはH-InvDBの各所にある「evola_icon（樹木アイコン）」からアクセスできます。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17982176
distribution: Distribution
  description: download.html
  description: download jp.html
  rights: help Evola jp.html
  rights: help Evola.html
  access URL: http://www.h-invitational.jp/evola/download.html
  access URL: http://www.h-invitational.jp/evola/download_jp.html
landing page: http://www.h-invitational.jp/evola/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9796
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13616
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/99883
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9600
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/31033
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: Active @en
status: 稼動中

nbdc00444
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Evolutionary Trace Server

nbdc00444
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Evolutionary Trace Server

Evolutionary Trace Server
type: Dataset
description: アミノ酸配列をクエリとし、Blast検索、マルチプルアライメント、と順次ET法の各過程を実行し、最終的に予測した保存部位を立体構造上に表示します。
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16809388
landing page: http://pdbjets.protein.osaka-u.ac.jp/
theme: T0021
theme: T0028
theme: T0022
theme: T0007
status: 休止
status: Inactive @en

nbdc00446
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-11
source: Integbio Database Catalog
primary topic: FABA2

nbdc00446
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-11
source: Integbio Database Catalog
primary topic: FABA2

FABA2
type: Dataset
alternative: Four-dimensional Ascidian Body Atlas Ver.2
alternative: Four-dimensional Ascidian Body Atlas 2 @en
description: FABA2 is a database of ascidian's three-dimensional (3D) and cross-sectional images in late developmental stages. It contains the images which were acquired by visualizing F-actin of ascidian, C. intestinalis from 17.5hpf hatching larva to 7dpf juvenile, stained with alexa fluor phalloidin by confocal laser scanning microscope (CLSM) and reconstructed from more than 3,000 high-resolution real images. Time-lapse images by stereo microscope were obtained and matched with images by CLSM which correspond to 31 different stages. @en
description: カタユウレイボヤの孵化後の細胞の時空間的形態変化を明らかにし、網羅的発生ステージ表を作製することを目的に、後期の各発生ステージ（受精後17.5時間幼生～受精後7日幼若体）に対応する形態の3次元画像および断面画像を取得しました。これらの画像は、Alexa蛍光ファロイジンで染色したホヤのF-アクチンを共焦点レーザー走査顕微鏡（CLSM）で可視化し、3000枚以上の画像を再構築することで得られたものです。
language: ja
language: en
publisher: 慶應義塾大学
  type: Organization
  label: Keio University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17557317
distribution: Distribution
  access URL: https://www.bpni.bio.keio.ac.jp/chordate/faba2/download/download.html
landing page: https://www.bpni.bio.keio.ac.jp/chordate/faba2/top.html
landing page: https://www.bpni.bio.keio.ac.jp/chordate/faba2/ja/top.html
theme: T0014
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7719
status: Active @en
status: 稼動中

nbdc00447
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: FANTOM3

nbdc00447
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: FANTOM3

FANTOM3
type: Dataset
alternative: Functional Annotation of Mouse 3 @en
description: マウス全長cDNAクローンの配列に対するアノテーションのデータベースです。（転写開始位置情報として）CAGE tags, GSC ditags情報も併用されています。FANTOM3では、CAGE（Cap Analysis of Gene Expression）法の開発を行い、ゲノムワイドな転写開始点の同定を行いました。
description: FANTOM3 is a database of the mouse transcriptome, with comprehensive information on expressed mouse genes assembled using technologies developed by the FANTOM consortium. Several sets of data are available for bulk FTP download, and links to cDNA annotation browsers are provided. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16141073
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16141072
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16645617
distribution: Distribution
  access URL: http://fantom3.gsc.riken.jp/download.html
landing page: http://fantom3.gsc.riken.jp
theme: T0021
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00448
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: FANTOM4

nbdc00448
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: FANTOM4

FANTOM4
type: Dataset
alternative: Functional Annotation of the Mammalian Genome 4
description: FANTOMは、理化学研究所 オミックス基盤研究領域が主催する国際研究コンソーシアムです。このデータベースでは、過去の FANTOMプロジェクトで得られたデータを最新のゲノム配列へマップした結果とともに、最新のFANTOMプロジェクトであるFANTOM4で得られた結果を提供しています。FANTOM4では、ゲノム上に同定された要素同士が互いにどのように作用しているかというネットワークの解明に取り組みました。
description: FANTOM is a database about functional annotations of the Mammalian genomes. It contains experimental data of the FANTOM consortium which is an international collaborative research project initiated and organized by the RIKEN Omics Science Center. This database includes CAGE tags, mapping, and promoters (clusters or aggregations of CAGE tags as units of promoter) for human and mouse, and information about the experiments and data processing. Users are able to use genome browser or EDGE express DB which is designed for integrating and interpreting large high-throughput expression datasets in the context of biological networks. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19377478
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20211142
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19377474
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19377475
distribution: Distribution
  description: download
  rights: download
  access URL: http://fantom.gsc.riken.jp/4/download/
landing page: http://fantom.gsc.riken.jp/4/index.php?lang=jp
landing page: http://fantom.gsc.riken.jp/4/index.php?lang=en
theme: T0021
theme: T0024
theme: T0026
theme: T0007
theme: T0005
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0029
status: Active @en
status: 稼動中

nbdc00449
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Flavonoid Database

nbdc00449
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Flavonoid Database

Flavonoid Database
type: Dataset
description: 様々な植物種で同定されたフラボノイドを報告した文献を集めたデータベースです。物質、植物種、文献 という3つの名前空間で構成されます。現在、6918フラボノイド構造、3655植物種、5006件の文献に基づく 19937物質：生物種の対応関係が登録されています。検索機能として、化合物検索、著者や雑誌の検索、構造検索が用意されています。食品情報も提供されています。
description: Flavonoid Database is a wiki-based database of flavonoids maintained by Arita Laboratory, the University of Tokyo. This database includes indexes for flavonoids, authors of journal papers and journal titles, and information on food containing flavonoids. Users can search flavonoids from backbone structures, hydroxylation and methylation patterns, glycosylation patterns and other modifications. @en
language: ja
language: en
publisher: 東京大学 大学院理学系研究科 生物化学専攻
  type: Organization
  label: The University of Tokyo Graduate School of Science Department of Biophysics and Biochemistry @en
  address country: Japan @en
  address country: 日本
landing page: http://metabolomics.jp/wiki/Category:FL
theme: T0023
theme: T0010
theme: T0029
theme: T0030
status: Active @en
status: 稼動中

nbdc00450
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: FLJ Human cDNA Database

nbdc00450
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: FLJ Human cDNA Database

FLJ Human cDNA Database
type: Dataset
description: 転写開始点の多様性やスプラシシングバリアントに焦点を当てたヒトcDNA配列解析データベースです。ヒト遺伝子数は2万～2万5000と推定されましたが、ヒトmRNAのバリエーションは10万程度と予測されています。この多様性は転写開始点とスプライシングの多様化により引き起こされていると考えれらています。このデータベースは、経済産業省「完全長cDNA構造解析プロジェクト」において得られたFLJ完全長cDNA配列、FLJ完全長cDNA配列の5'-EST、公開ヒトcDNA配列、ヒトゲノム配列などを用いて構築されました。
description: FLJ is a sequence analysis database that is focused on mRNA variations of human genome and cDNA sequences. There are about 20 to 25 thousand human genes and 100 thousand mRNA varieties, which are apparently caused by transcription start site (TSS) variations and splicing. In the previous human cDNA project, approximately 30 thousand FLJ human full-length sequenced cDNAs were deposited in DDBJ/GenBank/EMBL, and approximately 1.4 million of 5'-end sequences (5'-EST) of FLJ full-length cDNAs from approximately 100 kinds of cDNA libraries of human tissues and cells that were constructed by the oligo-capping method were obtained. These FLJ cDNAs included approximately 80% of all human genes. In the project we developed an efficient splicing variant cDNA cloning and evaluation system, obtaining more than a thousand full-length sequenced cDNAs, which we used with the human genome to construct a sequence analysis database focused on mRNA variations. @en
language: en
publisher: 情報・システム研究機構 ライフサイエンス統合データベースセンター
  type: Organization
  label: Research Organization of Information and Systems Database Center for Life Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19880432
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20728443
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10756096
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11808872
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140100
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19054851
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16344560
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16303743
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19073703
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11375929
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11337467
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11700583
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14702039
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11853313
distribution: Distribution
  access URL: http://flj.lifesciencedb.jp/top/sys_info/02_about_database/accession_no/download_v032.html
  access URL: http://flj.lifesciencedb.jp/top/sys_info/02_about_database/accession_no/download_v031.html
  access URL: http://flj.lifesciencedb.jp/top/sys_info/02_about_database/accession_no/download.html
landing page: http://flj.lifesciencedb.jp/
landing page: http://flj.lifesciencedb.jp/top/
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00451
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Fluorome

nbdc00451
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Fluorome

Fluorome
type: Dataset
alternative: The Cyanobacterial Chlorophyll Fluorescence Database
description: 原核光合成生物であるシアノバクテリアのクロロフィル蛍光強度の時間変化を変異株ごとに取得したデータベースです。シアノバクテリアSynechocystis sp. PCC 6803の約500の変異株のデータが収録されています。各遺伝子破壊株のクロロフィル蛍光挙動をグラフィックに見ることができると共に、その蛍光挙動が２つの遺伝子破壊株の間でどの程度異なるかを定量化し、自分が注目する遺伝子破壊株とよく似た蛍光挙動を示す遺伝子破壊株をリストアップすることができます。
description: Fluorome is a database of cyanobacterial chlorophyll fluorescence information, with information on the kinetic responses of hundreds of gene deletion mutants. Users can search by ORF, gene, or mutation and obtain information on phenotype and mutations that result in similar kinetic response. @en
language: en
publisher: 早稲田大学 教育学部
  type: Organization
  label: Waseda University School of Education @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17284470
landing page: http://www.photosynthesis.jp/fluorome/
theme: T0014
theme: T0010
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1148
status: Active @en
status: 稼動中

nbdc00452
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: fRNAdb （アーカイブ）

nbdc00452
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: fRNAdb （アーカイブ）

fRNAdb （アーカイブ）
type: Dataset
title: fRNAdb (Archive) @en
alternative: Functional RNA Database @en
description: fRNAdb is a sequence database hosting a large collection of non-coding RNA sequence data that were obtained from public non-coding databases. Users of the fRNAdb database can search the sequences by inputting associated keywords, e.g., miRNA or snoRNA. By adding the name of the disease or the tissue, the search will be more specific. @en
description: 経済産業省「機能性RNAプロジェクト」の成果であるデータベース群のポータルサイト「ncRNA.org」の中のデータベースです。ncRNAの配列、構造、遺伝子発現情報をまとめています。 国立研究開発法人産業技術総合研究所によるオリジナルサイト （http: //www.ncrna.org/frnadb/） の運用は終了しました。fRNAdbのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17145715
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16683036
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17099231
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18948287
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17099226
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381836
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381832
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608158
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520045
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16185827
distribution: Distribution
  description: download.html
  rights: lic.html
  access URL: http://dbarchive.biosciencedbc.jp/jp/frnadb/download.html
landing page: http://dbarchive.biosciencedbc.jp/jp/frnadb/desc.html
landing page: http://dbarchive.biosciencedbc.jp/en/frnadb/desc.html
theme: T0021
theme: T0024
theme: T0006
status: Active @en
status: 稼動中

nbdc00453
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: FUGU GENOME PROJECT

nbdc00453
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: FUGU GENOME PROJECT

FUGU GENOME PROJECT
type: Dataset
description: Fugu Genome Project is a database of the pufferfish (Takifugu rubripes) genome. The database contains a genome browser with BLAST search, genetic linkage maps, and functional annotations of transscription factor genes. Genome data is available for download. @en
description: フグのゲノム情報を提供しています。このサイトでは各アセンブルデータに対するBLAST機能やアセンブルされた配列情報のダウンロード、GenomeBrowserを使用することができます。
language: en
publisher: Institute of Molecular and Cell Biology
  type: Organization
  address country: Singapore @en
  address country: シンガポール
distribution: Distribution
  access URL: http://www.fugu-sg.org/downloads/
landing page: http://www.fugu-sg.org/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/31033
theme: T0001
status: 休止
status: Inactive @en

nbdc00454
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full-Anopheles

nbdc00454
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full-Anopheles

Full-Anopheles
type: Dataset
alternative: Anopheles Full-length cDNA database @en
description: This database of the Anopheles genome allows for browsing cDNA clones mapped to the genome, keyword search, BLAST search, or bulk data download, and provides links to other genome databases. @en
description: ハマダラカ完全長cDNAデータベースにはBLASTやGenomeBrowserを使用できるようになっています。その中ではゲノム配列のみならず、アミノ酸配列情報も掲載されています。ダウンロードページが機能していません。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: ftp://ftp.hgc.jp/pub/hgc/db/fulmal/20080924/As/
landing page: http://fullmal.hgc.jp/index_ag_ajax.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/30069
theme: T0002
status: Active @en
status: 稼動中

nbdc00455
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full-Babesia

nbdc00455
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full-Babesia

Full-Babesia
type: Dataset
alternative: Babesia Full-length cDNA database
description: This is a database of the Babesia genomes, and allows for browsing of the cDNA clones mapped to the genomes, keyword search, or bulk data download and provides links to other genome databases. @en
description: バベシア完全長cDNAデータベースにはBLASTやGenomeBrowserを使用できるようになっています。その中ではゲノム配列のみならず、アミノ酸配列情報も掲載されています。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
landing page: http://fullmal.hgc.jp/index_bb_ajax.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5864
theme: T0002
status: Active @en
status: 稼動中

nbdc00456
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full-Cryptosporidium

nbdc00456
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full-Cryptosporidium

Full-Cryptosporidium
type: Dataset
alternative: Cryptosporidium Full-Length cDNA Database @en
description: This is a database of the Cryptosporidium genome to browse the cDNA clones mapped to the genome, keyword search, BLAST search, or bulk data download and provides links to other genome databases. @en
description: クリプトスポリジウム完全長cDNAデータベースにはBLASTやGenomeBrowserを使用できるようになっています。その中ではゲノム配列のみならず、アミノ酸配列情報も掲載されています。ダウンロードページでは配列情報がFASTA形式で取得できます。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: ftp://ftp.hgc.jp/pub/hgc/db/fulmal/recent/Cp/
landing page: http://fullmal.hgc.jp/index_cp_ajax.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5807
theme: T0007
theme: T0002
status: Active @en
status: 稼動中

nbdc00457
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full-Echinococcosis

nbdc00457
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full-Echinococcosis

Full-Echinococcosis
type: Dataset
alternative: Echinococcosis Full-length cDNA database
description: エキノコックス完全長cDNAデータベースには、クローンシーケンス情報がBLASTN(nt),BLASTX(nr),BLASTN(Em EST)と比較した結果と共に掲載されています。また、BLASTSearchも使用することができ、本DBの配列と比較することが可能になっています。
description: This database of the Ecchinococcus multilocularis genome allows browsing cDNA clone sequences and BLAST search. Data is available for download. @en
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
landing page: http://fullmal.hgc.jp/index_em_ajax.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6211
theme: T0002
status: Active @en
status: 稼動中

nbdc00458
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Full-Tsetse

nbdc00458
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Full-Tsetse

Full-Tsetse
type: Dataset
alternative: Tsetse Full-length cDNA database @en
description: ツェツェバエ完全長cDNAデータベースにはBLASTやGenomeBrowserを使用できるようになっています。ダウンロードページが機能していません。
description: This is a database of the Tsetse fly genome. The database allows for browsing of the cDNA clones mapped to the genome, keyword search, BLAST search, or bulk data download and provides links to other genome databases. @en
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: ftp://ftp.hgc.jp/pub/hgc/db/fulmal/20080924/Gm/
landing page: http://fullmal.hgc.jp/index_arth.html
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7394
status: Active @en
status: 稼動中

nbdc00460
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-03-18
source: Integbio Database Catalog
primary topic: 真菌・放線菌ギャラリー

nbdc00460
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-03-18
source: Integbio Database Catalog
primary topic: 真菌・放線菌ギャラリー

真菌・放線菌ギャラリー
type: Dataset
title: Fungus and Actinomycetes Gallery @en
description: Fungus and Actinomycetes Gallery is an image database of pathogenic fungi (fungi, yeasts and mushrooms) and actinomycetes maintained by Medical Mycology Research Center (MMRC), Chiba University. Each entry contains the Jananese and scientific names, an image of a pathogenic fungus or actinomycete, diversity and culture condition. Users can use the data and images only for educational and research purposes. @en
description: 本データベースは、ナショナルバイオリソースプロジェクト（NBRP）の一環として収集、保存、研究された病原性カビ、酵母、キノコおよび病原性放線菌の画像を公開しています。
language: ja
language: en
publisher: 千葉大学 真菌医学研究センター
  type: Organization
  label: Chiba University Research Center for Pathogenic Fungi and Microbial Toxicoses @en
  address country: Japan @en
  address country: 日本
landing page: http://www.pf.chiba-u.ac.jp/english/gallery.html
landing page: http://www.pf.chiba-u.ac.jp/gallery.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/201174
theme: T0029
theme: T0017
status: Active @en
status: 稼動中

nbdc00461
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: G-compass

nbdc00461
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: G-compass

G-compass
type: Dataset
description: G-compass is a browser intended for searching comparative genomes. Conserved genomic regions between humans and another 12 vertebrates (chicken, chimpanzee, cow, dog, horse, medaka, mouse, opossum, rat, rhesus monkey, tetradon and zebrafish) can be visualized based on the original genome alignments. Annotations of human genes/transcripts originally come from H-InvDB, while the ortholog information come from the Evola sub-database. Use of the G-compass database is free of charge. @en
description: ヒトとその他12種の脊椎動物を対象に、ゲノム保存領域を表示する比較ゲノムブラウザで、H-InvDB のサテライトデータベースとして開発されました。ヒトと各生物種間に１対１で保存されたorthologous なゲノム領域をグラフィカルに閲覧できます。同時に遺伝子座、リピート領域、コピー数多型領域(CNV)、哺乳類の系統で同定された超保存領域(UCE)、cis-element等の詳細なゲノム構造を見ることができ、各遺伝子座からH-InvDB のヒト遺伝子アノテーション情報を参照できます。
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19846439
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16169162
landing page: http://www.h-invitational.jp/g-compass/
landing page: http://h-invitational.jp/g-compass/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9796
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13616
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/99883
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: Active @en
status: 稼動中

nbdc00462
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GALAXY

nbdc00462
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GALAXY

GALAXY
type: Dataset
alternative: Glycoanalysis by the three axes of MS and chromatography @en
description: アスパラギン残基に結合している糖鎖（N型糖鎖）の構造を、独自の「2D/3D糖鎖マッピング法」により解析し、得られた構造（糖残基ユニットの組み合わせ）を掲載しています。これまでに解析蓄積した500種類に及ぶPA糖鎖の構造式、 ODSカラム及びアミドカラムにおける溶出位置、マススペクトロメトリーで得られるPA糖鎖の分子量、コード番号、試料糖鎖の起源、参考文献が含まれています。
description: GALAXY is a database about mapping of carbohydrate chains for structural determination and prediction. It contains data on approximately 500 different PA-glycans that were analyzed using original 2-D/3-D mapping method. Data in this site includes the structures, HPLC elution positions expressed in glucose units (GU) on ODS and amide-silica columns, relative molecular mass, code numbers, sources of samples, and references. @en
language: ja
language: en
publisher: 名古屋市立大学 大学院薬学研究科
  type: Organization
  label: Nagoya City University Graduate School of Pharmaceutical Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://www.glycoanalysis.info/galaxy2/
landing page: http://www.glycoanalysis.info/galaxy2/ENG/index.jsp
theme: T0023
theme: T0008
status: Active @en
status: 稼動中

nbdc00463
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Gastrointestinal Medical Image Database (消化管医用画像データベース)

nbdc00463
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-11-04
source: Integbio Database Catalog
primary topic: Gastrointestinal Medical Image Database (消化管医用画像データベース)

Gastrointestinal Medical Image Database (消化管医用画像データベース)
type: Dataset
title: MIDB @en
alternative: Gastrointestinal Medical Image Database @en
description: MIDB is a database about medical images of gastrointestinal tumors. It contains images obtained by ultrasonography, endoscopy, X-ray, CT, MRI, macroview or histology and results of blood test. This database allows to search using a list of disease. Moreover, it allows to search cases or images using keywords, histopathological classfications, locations, technique, methods, etc.. @en
description: 匿名化された消化管疾患の症例について、超音波によるエコー像・内視鏡像・CT・MRI・切り出し時の肉眼像・組織切片の顕微鏡像および血液検査値等をアーカイブ化しています。国立研究開発法人国立病院機構九州がんセンターによって運営されています。
language: ja
language: en
publisher: 国立研究開発法人国立病院機構 九州がんセンター
  type: Organization
  label: National Hospital Organization Kyushu Cancer Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.midb.jp/db/
landing page: http://www.midb.jp/db/en/
theme: T0015
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00464
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Gclust Server

nbdc00464
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Gclust Server

Gclust Server
type: Dataset
description: Gclustデータベースは系統プロファイルによる検索を可能にした相同タンパク質データベースです。95生物種の全タンパク質の総当たりBLASTの結果に基づき、類似度の閾値を自動的に設定しながら相同タンパク質の分類を行います。機能未知タンパク質についても相同クラスタができるため、着目する生物群に特有の相同クラスタを見つけることにより、それら生物群に固有の生理機能にかかわるタンパク質を発見する手がかりが得られます（系統プロファイリング）。
description: Gclust is a database of homologous proteins across organisms. It contains protein homology information for bacteria, cyanobacteria, algae, and plants. All homologous genes for any given species are represented. Proteins can be searched by keyword or BLAST. Bulk data is available for download. @en
language: en
publisher: 東京大学 大学院総合文化研究科
  type: Organization
  label: The University of Tokyo Graduate School of Arts and Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16901089
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19158159
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14571386
distribution: Distribution
  rights: Gclust Download.html
  access URL: http://gclust.c.u-tokyo.ac.jp/Gclust_Download.html
landing page: http://gclust.c.u-tokyo.ac.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33208
theme: T0021
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
status: Active @en
status: 稼動中

nbdc00465
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GEMCA

nbdc00465
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GEMCA

GEMCA
type: Dataset
alternative: Genotyping Microarray based CNV Analysis @en
description: マイクロアレイによる遺伝子発現およびDNAコピー数解析によって、染色体およびRNAのレベルからゲノムの多様性を解明し、疾患感受性や薬剤感受性の遺伝的素因を明らかにすることを目指し、ヒトゲノム配列中のコピー数を定量するアルゴリズムを開発しました。
description: It appears this site concerns a research project where the comprehensive amount of information created by the Human Genome Project is studied in terms of the way human genes are expressed, proteins are produced and how different proteins react with one another, in order to understand the complex biological systems that take place in the human body. The aim of the study is to eventually be able to apply what they learn to better diagnose and/or treat human disease. Studying the changes that develop in the human genome when a cancerous growth develops in the liver or pancreas, led to the deduction that these genomic changes activate oncogenes and inactive tumor suppressor genes. How the genome is interpreted and packaged is of vital importance to normal cell development and differentiation and mistakes taking place during these processes have an important effect on the development and outcome of disease. @en
language: en
publisher: 東京大学 先端科学技術研究センター
  type: Organization
  label: The University of Tokyo Research Center for Advanced Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.rcast.u-tokyo.ac.jp/CNV/gemca_details.html
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: 休止
status: Inactive @en

nbdc00466
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Gene Expression in Tooth Database

nbdc00466
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Gene Expression in Tooth Database

Gene Expression in Tooth Database
type: Dataset
description: 歯の遺伝子発現データベースには成長因子、受容体、シグナル分子などの分類で遺伝子発現情報が記録されており、その成長過程での遺伝子発現の有無についても各種実験方法で確かめられた結果がリストで掲載されています。
description: gene Expression in Tooth Database contains a wide variety of information characterizing the underlying biology of teeth. gene expression can be browsed by gene family, visualized in several experiments, and broken down by tooth tissue component. @en
language: en
publisher: University of Helsinki
  type: Organization
  address country: フィンランド
  address country: Finland @en
landing page: http://bite-it.helsinki.fi
theme: T0024
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00467
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-03-29
source: Integbio Database Catalog
primary topic: AOE

nbdc00467
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-03-30
source: Integbio Database Catalog
primary topic: AOE

AOE
type: Dataset
alternative: All Of gene Expression
description: This is an interface to search/view gene expression data in EBI ArrayExpress. The statistical value from metadata in ArrayExpress are shown as interactive graphs and users can select data by organisms and experiment types. Each data are linked to EBI ArrayExpress. @en
description: EBI ArrayExpress に登録されている遺伝子発現データを容易に検索、閲覧するためのインターフェースです。ArrayExpress のメタデータから集計した統計値をインタラクティブなグラフにまとめてあり、生物種別、手法別の登録件数が一覧できます。また、生物種、手法、登録年によるデータリストの絞り込みが可能です。各データは EBI ArrayExpress にリンクしています。 NCBI Gene Expression Omnibus (GEO) の登録データを容易に利用するためのインターフェースであった「GEO目次」の後継サイトです。
language: ja
language: en
publisher: 情報・システム研究機構 ライフサイエンス統合データベースセンター
  type: Organization
  label: Research Organization of Information and Systems Database Center for Life Science @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: aoe.dbcls.jp
landing page: http://aoe.dbcls.jp/en/
landing page: http://aoe.dbcls.jp
theme: T0024
theme: T0007
theme: T0006
theme: T0002
status: Active @en
status: 稼動中

nbdc00468
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Gene Ontology Annotation (UniProtKB-GOA) Database

nbdc00468
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-18
source: Integbio Database Catalog
primary topic: Gene Ontology Annotation (UniProtKB-GOA) Database

Gene Ontology Annotation (UniProtKB-GOA) Database
type: Dataset
description: 本プロジェクトは高精度のGOアノテーションをUniProtKBやIPIに付加するためのものです。
description: GOA is a database of gene function and interaction information. The database contains manual and automated annotations of gene ontology. Users can download current and previous versions of the database including gene annotations, gene interactions, and ontology mapping files. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22123736
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18957448
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19744993
distribution: Distribution
  description: README
  rights: README
  access URL: http://www.ebi.ac.uk/GOA/downloads
landing page: http://www.ebi.ac.uk/GOA
theme: T0019
theme: T0007
status: Active @en
status: 稼動中

nbdc00469
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GeneDB

nbdc00469
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GeneDB

GeneDB
type: Dataset
description: GeneDBはSangerInstituteの病原菌ゲノミクスの中核をなすプロジェクトです。GeneDBではタンパクの長さ、タンパク質の分子量、遺伝子の種類やGeneOntology、EC番号などでDB内の情報を検索することができます。
description: geneDB is a database of genomic and proteomic data of several species generally regarded as pests or parasites. The database contains information pages for dozens of species across six large classes including viruses, protozoa, helminths, bacteria, and vectors. Users can search by sequence feature or ID or browse the database. @en
language: en
publisher: Sanger Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22116062
landing page: http://www.genedb.org
theme: T0021
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00470
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GENIA Project

nbdc00470
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GENIA Project

GENIA Project
type: Dataset
description: GENIA is a database of computationally mined information regarding genes, molecules, and pathways. The site explains data mining procedures in detail and provides corpuses for several pathways. Data can be downloaded in BioNLP Shared Task-flavored standoff format. @en
description: 科学技術分野における情報の洪水を克服するために科学者の書いた文章から有用な情報を抽出することを目的としています。現在、分子生物学論文からのタンパク質反応イベントの抽出をタスクとしたシステムと、その構築に必要なリソース（コーパス、辞書）の開発を行なっています。
language: en
publisher: 東京大学 大学院情報理工学系研究科
  type: Organization
  label: The University of Tokyo The Graduate School of Information Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.nactem.ac.uk/genia/
theme: T0019
status: Active @en
status: 稼動中

nbdc00471
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-17
source: Integbio Database Catalog
primary topic: GENIUS II（アーカイブ）

nbdc00471
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-15
source: Integbio Database Catalog
primary topic: GENIUS II（アーカイブ）

GENIUS II（アーカイブ）
type: Dataset
title: GENIUS II (Archive) @en
description: GENIUS II is a database system in which all protein-cording regions of organisms are assigned to the published three-dimensional structures. It uses the multiple intermediate sequence search method. @en
description: 多重媒介配列検索法（MISS法）を用いて、全ゲノム配列が決定されている生物種の全ORFコードタンパク質を構造既知のタンパク質の立体構造に帰属したデータベースシステムです。 国立研究開発法人産業技術総合研究所によるオリジナルサイト（http ://genius.cbrc.jp） の運用は終了しました。引き続き生命科学系データベースアーカイブからGENIUS IIをご利用いただけます。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10211823
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14751990
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10195280
distribution: Distribution
  description: README.html
  description: README e.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/genius/download.html
  access URL: https://dbarchive.biosciencedbc.jp/en/genius/download.html
landing page: https://dbarchive.biosciencedbc.jp/jp/genius/desc.html
landing page: https://dbarchive.biosciencedbc.jp/en/genius/desc.html
theme: T0021
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00472
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-05-14
source: Integbio Database Catalog
primary topic: Genolevures

nbdc00472
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-05-14
source: Integbio Database Catalog
primary topic: Genolevures

Genolevures
type: Dataset
alternative: Genomic Exploration of the Hemiascomycete Yeasts
description: このデータベースはアノテーション付けされたシーケンスデータや18種類のHemiascomycete Yeastの分類を提供しています。
description: This database contains sequence data with annotations and classifications of 18 species of Hemiascomycete Yeast. Each record includes details on the gene, position, protein family name, and links to other databases. @en
language: en
publisher: Bordeaux Bioinformatics Center
  type: Organization
  address country: France @en
  address country: フランス
distribution: Distribution
  description: download.html#
  access URL: http://www.genolevures.org/download.html#
landing page: http://www.genolevures.org/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4891
theme: T0001
theme: T0027
status: Suspended @en
status: 公開停止中

nbdc00473
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: Genome

nbdc00473
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: Genome

Genome
type: Dataset
description: 1,000以上の生物の染色体配列、コンティグ配列、UniGeneクラスター、遺伝子の染色体マッピング情報を提供しています。真正細菌、古細菌、真核生物、ウイルス、ファージ、ウイロイド、プラスミド、オルガネラの完全ゲノムやドラフトゲノムが登録されています。
description: Genome is a database of sequences and information on completed genome projects. The database contains complete sequences for dozens of organisms from microbes to mammals, as well as the genomes of organelles and viruses. Several sequence exploration tools (including map viewer and protein clusters) are available. Users can submit genomes or download data via FTP. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/genomes/
landing page: http://www.ncbi.nlm.nih.gov/genome
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0013
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
theme: T0001
status: Active @en
status: 稼動中

nbdc00474
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-01
source: Integbio Database Catalog
primary topic: EMBL-EBI > Services

nbdc00474
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-01
source: Integbio Database Catalog
primary topic: EMBL-EBI > Services

EMBL-EBI > Services
type: Dataset
description: EMBL-EBI のツールとデータリソースをまとめたサイトです。Ensembl、UniProt、PDBe、Europe PMC、Expression AtlasなどのデータベースやClustal Omega、InterProScan、BLAST などのツールが含まれています。DNA & RNA、遺伝子発現、タンパク質、構造などのデータの種類による絞り込みや、キーワードによる検索が可能です。
description: This site is a portal site by EMBL-EBI. The site contains easy links to several free-access database systems and tools coordinate and hosted by EMBL-EBI, including topics ranging from chemical biology to molecular and cellular structures. Within each of nine categories, links to dozens of other resources are provided from which users can access online data or download software and bulk data. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: https://www.ebi.ac.uk/services
theme: T0021
theme: T0031
theme: T0024
theme: T0023
theme: T0022
theme: T0026
theme: T0001
theme: T0007
theme: T0005
theme: T0006
theme: T0011
theme: T0030
theme: T0019
status: Active @en
status: 稼動中

nbdc00475
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: Genome Network Platform

nbdc00475
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Genome Network Platform

Genome Network Platform
type: Dataset
description: 「ゲノムネットワークプロジェクト」は転写制御を中心とした生体内のネットワークを網羅的に探査し、その全容を明らかにすることを目的としています。ヒト遺伝子の転写開始点の情報、転写因子とヒトゲノム上の制御領域への結合に関する情報、転写因子を中心としたタンパク質間相互作用に関する情報に関するデータを、利用可能な形に整合化し情報プラットフォームを構築すると共に、統合的なデータベースを作成しました。
description: Genome network platform is an integrated database and web viewers for the Genome Network Project. It integrates experimental data, which generated from the project in association with the public databases, relating to the following information: 1) transcription starting position of human genes in the human genome, 2) conjunction to control region on transcriptional factors and the human genome, 3) protein-protein interaction with a central focus on transcription factors. This database provides the following functions: a) 'Genome Explorer' for annotation of landmarks (genes, transcription start sites, etc.) aligned in accordance with their genome locations. b) 'PPI Network' for a graphical view of protein-protein interaction (PPI) network from the experimental data generated under the project and the public datasets. c) 'Expression Profile' to cluster genes by expression pattern and display the result with heatmap, and for genes which have relation of coregulation and anti-coregulation. d) 'Comparison Viewer' for comparison the genomic region of Human/Mouse. Users are able to obtain the distributed clones. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: dataset e.html
  rights: dataset.html
  access URL: http://genomenetwork.nig.ac.jp/download/dataset_e.html
  access URL: http://genomenetwork.nig.ac.jp/download/dataset.html
landing page: http://genomenetwork.nig.ac.jp/index_e.html
landing page: http://genomenetwork.nig.ac.jp/
theme: T0021
theme: T0024
theme: T0026
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00476
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BioProject (Formerly Genome Project)

nbdc00476
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BioProject (Formerly Genome Project)

BioProject (Formerly Genome Project)
type: Dataset
description: 特定の組織やコンソーシアムにより立ち上げられたゲノムプロジェクトをはじめとする生命科学分野の各種プロジェクトを単位とし、そこから産生されたデータセットをまとめたデータベースです。産生された配列データに関しては完全決定配列（ドラフト、進行中を含む）、アセンブリ、アノテーション、マッピングなどの進捗状況が含まれています。
description: BioProject is a database which collects the results of research projects under the umbrella of the project or initiative. The database consists of tables of projects, which users can search or browse to find all data outputs related to that project. Users can submit projects or download data via FTP. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22139929
distribution: Distribution
  rights: copyright
  access URL: ftp://ftp.ncbi.nlm.nih.gov/bioproject/
landing page: http://www.ncbi.nlm.nih.gov/bioproject
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
theme: T0001
status: Active @en
status: 稼動中

nbdc00477
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Genome Project of Symbiobacterium thermophilum

nbdc00477
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Genome Project of Symbiobacterium thermophilum

Genome Project of Symbiobacterium thermophilum
type: Dataset
description: This is a database of the Symbiobacterium thermophilum genome, with an annotation table, the complete sequence, and images of S. thermophilum. Information about the organism is also provided. @en
description: Symbiobacterium thermophilum（好熱性細菌の一種）の完全長塩基配列から得られた情報（オーソログ分析の結果、パラログ分析の結果、系統樹等）を公開しています。
language: en
publisher: 日本大学 大学院総合科学研究科
  type: Organization
  label: Nihon University Advanced Research Institute for the Sciences and Humanities @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15383646
landing page: http://hp.brs.nihon-u.ac.jp/~projects/genome/STH/
theme: T0021
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2734
theme: T0001
status: 休止
status: Inactive @en

nbdc00478
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: GenomeAtlasDatabase

nbdc00478
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: GenomeAtlasDatabase

GenomeAtlasDatabase
type: Dataset
description: 各種真正細菌の様々な情報がまとまっています。GenomeAtlas, BaseAtlas, A-DNA Atlas, Z-DNA Atlas, Structure Atlasなどがあり、たとえばGenomeAtlasではCDSやGC塩基の割合などが図で示されます。
description: Genome Atlas Database is a resource for bacterial and archael genome resources. The database contains the most recent genome sequences of simple single-celled organisms. Users can browse by bacterial and archeal taxa organized in descriptive tables or search by organism, taxa group, or NCBI project ID. @en
language: en
publisher: Center for Biological Sequence Analysis
  type: Organization
  address country: Denmark @en
  address country: デンマーク
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15256401
landing page: http://www.cbs.dtu.dk/services/GenomeAtlas/
theme: T0021
theme: T0001
theme: T0007
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: 運用終了
status: Closed @en

nbdc00480
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Genpac

nbdc00480
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Genpac

Genpac
type: Dataset
description: ライフサイエンス専門用語辞書と高度な自然言語処理技術を用いて、MEDLINEアブストラクト内の概念（遺伝子／蛋白質、化合物、疾患、生命現象、器官、組織、細胞内器官、等）の関係情報をデータベース化したものです。アクセスにはユーザーログインが必要です。
language: ja
language: en
publisher: ナラプロ・テクノロジーズ株式会社
  type: Organization
  label: NalaPro Technologies, Inc. @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genpac-nalapro.com/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
status: 休止
status: Inactive @en

nbdc00481
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GENSAT

nbdc00481
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GENSAT

GENSAT
type: Dataset
alternative: Gene Expression Nervous System Atlas
description: GENSAT is a database of gene expression in the central nervious system. The database contains expression data from experiments in several genetically engineered mouse lines presented in the form of images of nervous system tissue. Brightfield and confocal images are available for hundreds of genes expressed in the nervous system. Users can browse by structure or search by gene, order mouse lines, and download data. @en
description: マウスの中枢神経系において、数千の遺伝子がいつ、どこで発現しているか、詳細な遺伝子発現地図を作成することを目的としています。胎児15.5日、生後7日、成獣の発生3段階の細胞について、RI法によるin situ ハイブリダイゼーション画像と、BACトランスジェニックマウスの発現画像を提供しています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14586460
distribution: Distribution
  description: GENSAT Data Mining PUBLIC DATABASE.pdf
  rights: about.jsp
  access URL: http://www.gensat.org/about.jsp
landing page: http://www.gensat.org/about.jsp
theme: T0024
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
status: Active @en
status: 稼動中

nbdc00482
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: GEO Data Sets

nbdc00482
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: GEO Data Sets

GEO Data Sets
type: Dataset
alternative: Gene Expression Omnibus Data Sets @en
description: GEO DataSets is a database of gene expression experiments, which is a part of GEO repository ( http://integbio.jp/dbcatalog/en/record/nbdc00080 ). The database contains summary information on thousands of published experiments studying gene expression. Users can search data sets by organism, gene, or keyword, and obtain expression profiles for a single gene across many studies in the dataset or compare expression profiles between data sets. Experimental datasets are also available to download via FTP. @en
description: マイクロアレイや次世代シーケンサー等で得られた機能ゲノムデータのレポジトリであるGEO（ http://integbio.jp/dbcatalog/record/nbdc00080 ）のデータセット部分です。実験データのデータセットとともに実験に使用されたプラットフォーム、実験条件や解析条件等の情報が整備されています。GEO Profileで発現プロファイルを探したり、ツールを利用して特定の遺伝子の発現を探したりサンプル間の遺伝子発現の比較等ができます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21097893
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752295
distribution: Distribution
  description: README.txt
  rights: disclaimer.html
  access URL: http://www.ncbi.nlm.nih.gov/geo/info/download.html
landing page: http://www.ncbi.nlm.nih.gov/gds
theme: T0024
theme: T0002
status: Active @en
status: 稼動中

nbdc00483
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-04-25
source: Integbio Database Catalog
primary topic: GOLD

nbdc00483
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-04-25
source: Integbio Database Catalog
primary topic: GOLD

GOLD
type: Dataset
alternative: Genomes Online Database @en
description: GOLDは世界中で行われているゲノム、メタゲノムの塩基配列解読プロジェクトに関する情報をそれらのメタデータとともに収集・提供しているデータベースです。GOLD (v.6)では28,744の研究、272,234の生物種、 21,910のバイオサンプル、134,884の塩基配列解読プロジェクト、111,625の解析プロジェクトの情報を提供しています。Advanced Searchではこれらのデータ階層をまたがった検索を行うことができます。ユーザが自身のプロジェクト情報を登録することもできます。
description: GOLD is a data management system that catalogs genome and metagenome sequencing projects with associated metadata from around the world. GOLD (v.6) provides information for 28,744 Studies, 272,234 Organisms, 21,910 Biosamples, 134,884 Sequencing Projects and 111,625 Analysis Projects. Advanced Search feature allow users to explore GOLD's different project levels above. @en
language: en
publisher: DOE Joint Genome Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/27794040
distribution: Distribution
  rights: disclaimer
  access URL: https://gold.jgi-psf.org/downloadexceldata
landing page: https://gold.jgi.doe.gov/index
theme: T0031
theme: T0001
theme: T0030
status: Active @en
status: 稼動中

nbdc00484
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GPCRDB (Information system for G protein-coupled receptors)

nbdc00484
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GPCRDB (Information system for G protein-coupled receptors)

GPCRDB (Information system for G protein-coupled receptors)
type: Dataset
description: GPCRDB is a database of G-coupled protein receptor information. The database contains gene and protein sequence information as well as protein structure, binding site, and conservation data. Users can search by protein ID or keyword, browse by family, structure, model, or oligomers, or utilize several GPCR-specific tools. @en
description: Gタンパク質共役受容体のアミノ酸配列情報を収集したデータベースです。GPCRの立体構造データ、膜貫通部位予測のデータ及び変異実験のデータ等を提供しています。
language: en
publisher: Centre for Molecular and Biomolecular Informatics
  type: Organization
  address country: オランダ
  address country: Netherlands @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21045054
landing page: http://www.gpcr.org/7tm
theme: T0021
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00485
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GRAMENE

nbdc00485
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GRAMENE

GRAMENE
type: Dataset
description: GRAMENE is a database of comparative sequence information in grass plants. The database has sections for genomes, genes, genetic diversity, metabolic pathways, ontologies, markers, QTLs, and BLAST search. A news feed for the latest database updates is also provided. Users can search all sections by keyword, and data is available to download. @en
description: イネゲノム統合情報です。ゲノム配列や、各種の系統図、代謝経路、タンパク質、遺伝子、オントロジー、マーカー、QTLなどのカテゴリを横断して検索することが可能です。BLASTなどのツールを使用することも可能です。
language: en
publisher: Cold Spring Harbor Laboratory
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21076153
distribution: Distribution
  description: ftp
  description: ftp-download
  rights: http://www.gramene.org/node/225
  access URL: http://www.gramene.org/ftp-download
landing page: http://www.gramene.org
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/147368
theme: T0001
theme: T0007
theme: T0027
theme: T0003
theme: T0019
theme: T0030
status: Active @en
status: 稼動中

nbdc00486
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GSS

nbdc00486
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GSS

GSS
type: Dataset
description: GSS is a database of collected, unannotated sequences. The database contains sequences from a variety of projects, including random surveys, exon-traps, and clone-end sequencing, primarily of genomic origin. Users can submit sequences or download via FTP. @en
description: GenBankのGSS (Genome Survey Sequence)の配列レコードを収集したデータベースです。各エントリーにつき、GSS名、クローン情報、プライマー情報、配列、ライブラリー情報、文献情報が表示されます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/genbank/
landing page: http://www.ncbi.nlm.nih.gov/nucgss
theme: T0021
theme: T0001
status: Active @en
status: 稼動中

nbdc00487
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GWAS DB

nbdc00487
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: GWAS DB

GWAS DB
type: Dataset
alternative: Genome wide association database @en
description: ゲノムワイド関連解析（非血縁の患者群と健常対照群を対象として、疾患遺伝子と多型マーカーの連鎖不平衡をゲノム全域にわたって検出する手法）によって得られたデータの管理と共有を目的として構築されたリポジトリー型のデータベースです。なお、データの利用に際しては共有方針のページ (http://gwas.biosciencedbc.jp/gwasdb/db_policy.html) をご参照ください。
description: GWAS DB is a database of gene-disease associations from published studies. The database contains a wealth of information about the studies and links to results and genes associated with several diseases. Diseases, genes, studies, and SNPs can be searched and results provide links and plots to association information. Please refer to the Sharing Policy (http://gwas.biosciencedbc.jp/gwasdb/db_policy_en.html) to use the data. @en
language: en
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  label: Japan Science and Technology Agency National Bioscience Database Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19629137
landing page: http://gwas.biosciencedbc.jp/cgi-bin/gwasdb/gwas_top.cgi
theme: T0021
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00488
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-18
source: Integbio Database Catalog
primary topic: GyDB

nbdc00488
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-18
source: Integbio Database Catalog
primary topic: GyDB

La Universitat de Valencia
type: Organization
address country: スペイン

Universidad Politecnica de Valencia
type: Organization
address country: スペイン

GyDB
type: Dataset
alternative: Gypsy Database 2.0 @en
description: 可動性遺伝因子(Mobile Genetic Element)に関するWikiベースのサイト構成になっており、BLAST,HMMPfam,HMMSearch,文献検索、データ送付などのメニューから構成されています。MGEに関するファミリーやドメイン情報が説明してあるページが存在します。
description: GyDb is a database of mobile genetic elements. The database contains information on several mobile element families and mobility systems, as well as tools for searching via BLAST or analyzing using HMM. Mobile elements can be submitted to the database. Phylogenetic trees and an alignment tool are also available. @en
language: en
publisher: La Universitat de Valencia, Universidad Politecnica de Valencia
  type: Organization
  address country: Spain @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21036865
landing page: http://gydb.org/index.php/Main_Page
theme: T0021
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0029
theme: T0007
theme: T0005
theme: T0030
status: Active @en
status: 稼動中

nbdc00489
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: H-DBAS

nbdc00489
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: H-DBAS

H-DBAS
type: Dataset
alternative: Human-transcriptome DataBase for Alternative Splicing @en
description: H-DBAS is the Human-transcriptome DataBase for Alternative Splicing, and is based on H-InvDB. Features of H-DBAS include annotated information of genome-wide human AS variants. Representative AS variants (RASVs) were identified from data of 6 model mammals, namely, human, mouse, rat, chimpanzee, macaque and dog, and are provided as full-length cDNA data sets, mRNA data sets and RNA data sets. Equally-spliced variants between these mammals were identified and compared sets are available. Splice sites and motifs that affect SNPs in humans, RASVs that affect protein function in humans and AS junctions tedetced by RNA-Sez tags are provided. @en
description: H-InvDBの配列データに基づく選択的スプライシング（alternative splicing, AS）のデータベースです。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19969536
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20433709
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15103394
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18838389
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17130147
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16914452
distribution: Distribution
  access URL: http://h-invitational.jp/h-dbas/download.jsp
  access URL: http://h-invitational.jp/h-dbas/download.jsp?lang=en
landing page: http://www.h-invitational.jp/h-dbas/?lang=en
landing page: http://h-invitational.jp/h-dbas/simple_search.jsp
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: Active @en
status: 稼動中

nbdc00490
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: HATODAS

nbdc00490
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: HATODAS

HATODAS
type: Dataset
alternative: Heavy-atom Database System @en
description: This database is named HATODAS, meaning Heavy-ATOm DAtabase System. The purpose is to assist the researcher in preparing heavy-atom derivatives of a certain target protein with greater ease. It contains a list of familiar heavy atom derivatives. Whereas, conventionally, derivatives are prepared through a lengthy process of 'hit-or-miss' procedures, searching this collection of data produces a result of suggested heavy-atom reagents for the target protein, determined by its crystallization conditions and amino-acid sequence. Using this database when studying the structure-determining process of target proteins, revealed that 93 particular sequences (motifs) were more often noticed to be present at the actual heavy-atom binding sites. These sequences are therefore perceived to be preferred for successful heavy-atom binding. The site provides a link to the RIKEN Harima Heavy-atom Database. @en
description: タンパク質のX線結晶解析に用いられる重原子誘導体の作成支援を目的としたデータベースシステムです。既知の重原子誘導体をデータベース化しており、結晶構造解析を行いたいタンパク質のアミノ酸配列を入力すると、標識物質として使える可能性の高い重原子試薬や重原子の結合サイトが出力されます。
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16131765
landing page: http://hatodas.harima.riken.jp/
theme: T0021
theme: T0022
theme: T0007
theme: T0011
status: Active @en
status: 稼動中

nbdc00491
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 血液腫瘍画像データベース (Hematological malignancy image database)

nbdc00491
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 血液腫瘍画像データベース (Hematological malignancy image database)

血液腫瘍画像データベース (Hematological malignancy image database)
type: Dataset
title: Database for hematological malignancy @en
description: 多岐にわたる白血病・悪性リンパ腫の病型をWHO分類(2001)、FAB分類(1976)を基に整理し、匿名化された造血器腫瘍の症例について、骨髄、リンパ節、末梢血の顕微鏡像および病理所見・検査所見等をアーカイブ化しています。骨髄転移性腫瘍も提示症例として掲載しています。 臨床医、臨床検査技師をはじめ医療スタッフの方々を対象にしています。
description: Database for hematological malignancy is an image database of hematological malignancies constructed by National Kyusyu Cancer Center. Each entry consists of a disorder name, histological images and detailed data on a medical case. Users can search medical cases by keywords, WHO Classification of tumours, FAB Classification, cell staining methods and detailed data (gender, age and others). @en
language: ja
language: en
publisher: 国立研究開発法人国立病院機構 九州がんセンター
  type: Organization
  label: National Hospital Organization Kyushu Cancer Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.midb.jp/blood_db/db.php?lang=en
landing page: http://www.midb.jp/blood_db/db.php?lang=jp
theme: T0015
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00492
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HERVd

nbdc00492
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HERVd

HERVd
type: Dataset
alternative: Human Endogenous Retrovirus Database
description: HERVd is a database of retroviruses endogenous to the human genome. Sequences were collected by computational search of published genome data covering greater than 90% of the human genome. Users can search by several parameters including family and chromosome, as well as perform BLAT and FASTA searches. @en
description: ファミリー、染色体位置などで情報を検索することができます。また、塩基配列をBLAT,FASTAを使用して検索することも可能です。
language: en
publisher: Academy of Sciences of the Czech Republic
  type: Organization
  address country: チェコ
  address country: Czech Republic @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681356
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752294
landing page: http://herv.img.cas.cz
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/11632
status: Active @en
status: 稼動中

nbdc00493
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: HGPD

nbdc00493
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-20
source: Integbio Database Catalog
primary topic: HGPD

HGPD
type: Dataset
alternative: Human Gene and Protein Database
description: The Human gene and Protein Database (HGPD) provides SDS-PAGE patterns of human genes and proteins. Now that the human genome sequence has been elucidated, the functional and structural analysis of genes has become important. Many Japanese and other cDNA projects have supplied high quality data on full-length cDNAs. Using the Gateway cloning system (Invitrogen, CA, USA) to construct human Gateway entry clones from full-length cDNAs, systematic and comprehensive expression of human proteins can be achieved. In the 'GW: Gateway Summary' window, amino acid and nucleotide sequences of open reading frame (ORF) regions for each cDNA and sequence differences are presented. Proteins are shown in the 'PE: Protein Expression' window and image data in the 'SL: Subcellular Localization' window. Most cDNA sequence analysis data in HGPD are also shared with the FLJ Human cDNA Database. Search can be conducted for ID, Keyword, BLAST and Category @en
description: 「タンパク質機能解析プロジェクト」及び「タンパク質機能解析・活用プロジェクト」において、約2万2千個のヒト遺伝子の約70％にあたる約15,000種に対応する世界最大のヒトGatewayRエントリークローンを作製し、世界最大規模のタンパク質発現リソースを構築しました。HGPDでは、ヒトGatewayRエントリークローンの詳細情報、SDS-PAGEによる発現タンパク質情報、クローンの入手案内を掲載しています。
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140100
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19073703
landing page: http://www.hgpd.jp/
theme: T0021
theme: T0024
theme: T0029
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: Active @en
status: 稼動中

nbdc00494
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GWAS Central

nbdc00494
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GWAS Central

GWAS Central
type: Dataset
description: GWAS Central is a database of summary findings from published GWAS. The database contains entries for phenotypes or diseases, genes, and markers used in the studies. Users can search or browse by gene, genomic region, or study. @en
description: ヒトの遺伝子型と表現型をまとめたデータベースです。アレルや遺伝子型頻度、遺伝的関連の意味の情報を含みます。JBICが開発したデータ記述標準PaGE-OM(Phenotype and Genotype Object Model)を用いています。以前の「Human Genome Variation database of Genotype-to-Phenotype information(HGVbaseG2P)」からデータベース名が変更されました。
language: en
publisher: University of Leicester
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752345
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592273
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18948288
distribution: Distribution
  rights: disclaimer
landing page: http://www.gwascentral.org/
theme: T0016
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00495
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-05-10
source: Integbio Database Catalog
primary topic: HHDB

nbdc00495
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-05-10
source: Integbio Database Catalog
primary topic: HHDB

HHDB
type: Dataset
alternative: Hydrogen and Hydration Database @en
description: 水素及び水和水を含むタンパク質構造データをデータベース化し、3次元表示を用いた分子構造閲覧機能、各種グラフを用いた統計情報閲覧機能を提供します。HHDBに登録されている水素及び水和水を含むタンパク質構造データは、中性子解析法によって得られる実測データと、X線解析法等によって得られる構造予測を含むデータです。
description: HHDB is a database of hydrogen atoms in 3D structures. The database contains images and statistics of localized hydrogens and water atoms in PDB structures. The database will calculate and provide plots of bond angles in a selected set of structures. @en
language: en
publisher: 国立研究開発法人量子科学技術研究開発機構
  type: Organization
  label: National Institutes for Quantum and Radiological Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://hhdb.taka.qst.go.jp/hx3/
theme: T0022
theme: T0029
theme: T0007
status: Suspended @en
status: 公開停止中

nbdc00496
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: HistoneDB

nbdc00496
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-12
source: Integbio Database Catalog
primary topic: HistoneDB

HistoneDB
type: Dataset
description: 各生物種のヒストンタンパク質とその配列変異の多様性についてのデータベースです。H1、H2A、H2B、H3、H4の各多型タンパク質についてアミノ酸配列、アラインメント、αヘリックスやβストランド構造の位置、生物種による分布を収録しています。ヒストン名によるブラウズが可能です。また配列、アラインメントはFASTA形式でダウンロードできます。
description: Histone Database is a resource for sequences and properties of histones and related proteins. The database contains sequences for histones across eukaryotic species, including alignments across species and the sequences of all human histones. Structures of histones in complex with DNA are also available. @en
language: en
publisher: National Human Genome Research Institute, National Institute of Health
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22025671
landing page: https://www.ncbi.nlm.nih.gov/research/HistoneDB2.0/index.fcgi/browse/
theme: T0014
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7742
theme: T0001
theme: T0007
theme: T0003
theme: T0021
theme: T0022
status: Active @en
status: 稼動中

nbdc00497
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HitPredict

nbdc00497
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HitPredict

HitPredict
type: Dataset
alternative: A database of high confidence protein-protein interactions @en
description: HitPredict is a database of protein-protein interactions. The database contains thousands of high-confidence interactions that can be searched by name, ID, or publication. The database is a non-redundant compilation of three high-quality sources, and each protein is notated with several identifiers. @en
description: ハイスループットデータから予測した高信頼性のタンパク質-タンパク質相互作用を収録したデータベースです。IntAct、BIOGRID、HPRDのタンパク質相互作用情報を集結させ、アノテーションと信頼度スコアを付与しました。9生物種間で176,983件の相互作用が登録されており、このうち116,118件が信頼性の高い予測結果です。Swissprot ID、PDB ID、Entrez gene ID、遺伝子名、キーワード、PubMed IDで検索できます。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15833142
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20947562
distribution: Distribution
  description: Interactions
  description: Download
  access URL: http://hintdb.hgc.jp/htp/download.html
landing page: http://hintdb.hgc.jp/htp/htp.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0007
status: Active @en
status: 稼動中

nbdc00498
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Homeodomain Resource

nbdc00498
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Homeodomain Resource

Homeodomain Resource
type: Dataset
description: ホメオドメインファミリーについて手作業でキュレートしたデータを収録しています。タンパク配列とドメイン領域の配列と、タンパク-DNA複合体の3次構造、タンパク-タンパク相互作用、DNA結合サイトの文献情報を提供しています。
description: Homeodomain Resource is a resource for sequences and properties of homeodomain proteins. The database contains sequences of proteins containing homeodomains and solved structures of homeodomains in complex with other proteins or nucleic acids. The database also includes information on diseases associated with homeodomain protein mutations. @en
language: en
publisher: National Human Genome Research Institute, National Institute of Health
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20157477
landing page: http://research.nhgri.nih.gov/homeodomain/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5501
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/38033
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/162425
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/40410
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10036
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/352472
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5346
theme: T0022
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8355
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/148305
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/93934
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/74940
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5180
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5270
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/45351
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5061
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/412133
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/312017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5141
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8364
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/412030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10228
status: Active @en
status: 稼動中

nbdc00499
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ヒトES細胞プロジェクト情報公開ページ

ヒトES細胞プロジェクト情報公開ページ
type: Dataset
description: ヒトES細胞の分与に関する規定や申請についての情報を提供しています。リソースの特性により、倫理に関する情報、その使用法の政府指針等へのリンクが提供されています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/escell/human/
theme: T0013
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 稼動中

nbdc00500
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: HUMHOT

nbdc00500
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: HUMHOT

HUMHOT
type: Dataset
alternative: Human Meiotic Recombination Hot Spots
description: HUMHOT is a database of human recombination hot spots. The database collects information where meiotic recombination occurs frequently into different categories. Hot spots can be searched by position or locus name, and general features of hotspots are provided. @en
description: 減数分裂時に相同組み換えが起こりやすい場所 (HotSpot)に関するデータを集めています。情報は文献等から取得しており、HotSpot名や染色体番号で検索することができます。
language: en
publisher: Jawaharlal Nehru Centre for Advanced Scientific Research
  type: Organization
  address country: India @en
  address country: インド
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381857
landing page: http://www.jncasr.ac.in/humhot/menuframe.html
theme: T0021
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00501
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: iCOD

nbdc00501
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: iCOD

iCOD
type: Dataset
alternative: integrated Clinical Omics Database @en
alternative: Integrated Clinical Omics Database
description: iCOD is an integrated database of medical cases and clinical omics data maintained by Tokyo Medical and Dental University Hospital Faculty of Medicine. The English version of this database contains case information of hepatic carcinoma based on clinical, pathological, and environmental data. This database provides the 2-dimensional-3-layered (2D-3L) map to analyze the correlation between pathology and genes. Users can search cases and disease genes by keywords, and restrict search results of cases by selecting categories of metadata. @en
description: 医療への応用に向けたゲノム、プロテオームなどの分子情報の成果をこれまでの臨床・病理情報や環境情報と関連づけ、新たな臨床医学として体系化するためのデータベースを目指しています。2005年より収集したがん症例について、臨床・病理情報、環境情報および分子情報を利用し、研究デザインに沿った統計解析、症例ごとの病態像について固体レベルから、組織レベル、細胞レベルに至るまで、横断的に視覚化するための情報を統合しています。 「症例一覧」「臨床オミックス解析」「遺伝子検索」の３つのメニューがあります。 「症例一覧」とは、2005年より東京医科歯科大学医学部附属病院および本プロジェクトの協力機関にて、研究の同意を得た患者様より頂いた臨床・病理・環境データを元にデータベースを作成しています。主に癌を対象とするいくつかの組織に関して、背景（病歴、生活歴等）、検査所見（血液、尿、画像検査の結果）、病理所見、治療、予後といった情報を多く、網羅的に掲載しています。個人が特定されないための匿名化および個人の特定情報については掲載していません。また、癌細胞における遺伝子発現情報、検体情報についても合わせて掲載しています。 「臨床オミックス解析」とは、臨床、病理、分子の3つの情報を横断的に統計解析し、病態と遺伝子の相関を見るための解析機能のことです。二次元三層マップとは、各層（臨床層、病理層、分子層）で使用するデータの種類と計算方法を指定し、二次元マップ上に配置します。 ある層のある点を選択すると、それに該当する、別の層での位置と関係性が見えるため、それぞれの相関や関係性が視覚的に認識ことができます。また、正則化正準相関分析による、全データの統合的な表示によって、臨床・病理情報と遺伝子発現データとの相関を一度に把握することができます。 「遺伝子検索」では、疾患を選択し、遺伝子名かプローブセットIDを入力すると、対象遺伝子の正常細胞と比較した時の遺伝子発現値を検索できます。
language: ja
language: en
publisher: 東京医科歯科大学
  type: Organization
  label: Tokyo Medical and Dental University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21143802
landing page: http://omics.tmd.ac.jp/icod_pub_eng/portal/top.do
landing page: http://omics.tmd.ac.jp/icod/portal/top.do
theme: T0015
theme: T0024
theme: T0029
theme: T0001
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 休止
status: Inactive @en

nbdc00502
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IES MDS Database

nbdc00502
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IES MDS Database

IES MDS Database
type: Dataset
description: 繊毛虫類の配列データベースです。大核（MAC）や小核（MIC）の配列、IES（Internal Eliminating Sequences）およびMDS（macronuclear-destined sequences） の位置情報や数が登録されています。生物名もしくはタンパク質名で検索をかけます。
description: IES MDS Database is a database which characterizes sequence dynamics in Spirotrichea. The database contains information on the sequences that are eliminated and rearranged during the process of genetic rearrangement in the lifecycle of these ciliates. Users can search by organism or gene name to retreive dynamic sequences. @en
language: en
publisher: Princeton University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15552058
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15258807
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14751966
landing page: http://oxytricha.princeton.edu/dimorphism/database.htm
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5944
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/94289
status: Active @en
status: 稼動中

nbdc00503
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IGTC

nbdc00503
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IGTC

IGTC
type: Dataset
alternative: International Gene Trap Consortium
description: 利用可能な遺伝子トラッピング用細胞株の情報を提供しているサイトです。Accession Number、ID、キーワード、配列データ組織発現プロファイル情報や生物学的経路で検索することが可能です。
description: IGTC is a public library of gene trap insertions that can be used to analyse gene function in mice. It contains gene trap cell lines which are distributed on a non-collaborative basis for nominal handling fees. Users are able to determine if the IGTC has trapped your gene or locus of interest using the BLAST search function to align your sequence to our database of trapped genes and cell line sequences. This database allows to search based on keywords or expression profile. @en
language: en
publisher: International Gene Trap Consortium
  type: Organization
  address country: Global
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381950
landing page: http://www.genetrap.org/
theme: T0021
theme: T0024
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00504
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IMSR

nbdc00504
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IMSR

IMSR
type: Dataset
alternative: the Internatinal Mouse Strain Resource
description: IMSR is a database of mouse strains. The database contains information on available mutant and wild type strains, stocks, and ES cell lines. Users can search available resources by strain state and type, repository, and filter by mutation type. Results indicate specifics of strains, references to primary literature, and provide contact information which can be used to obtain the strain or line. @en
description: マウスの種類や提供情報をまとめたデータベースです。系統名や系統種、試料の形態、遺伝子名や変異の種類、染色体番号、その他、マウス試料の提供元の場所で検索することが可能です。
language: en
publisher: The Jackson Laboratory, Medical Research Council
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15619965
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10098412
landing page: http://www.findmice.org/
theme: T0014
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
status: Active @en
status: 稼動中

nbdc00505
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: InBase

nbdc00505
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: InBase

InBase
type: Dataset
alternative: The Intein Database and Registry @en
description: インテイン（タンパク質分子の一部分で、自動的に切除され、残った部分（エクステイン）がペプチド結合で再結合される（「タンパク質スプライシング」）ようなもの）に関する公開・非公開の情報をまとめたものです。比較表や各インテインに関する詳細情報、網羅的な文献情報を提供しています。また、インテインに特化したBLASTサービスも提供しており新しいインテインを同定するのに役立てられます。 New England Biolabs Inc.によるサポートは終了していますが、当コピーサイトは機能しており、またNew England Biolabs IncもInBaseに収録された全てのデータを保存しています。（http://tools.neb.com/inbase.php/）
description: InBase is a database of spliced proteins. The database contains sequences of proteins which are cleaved and bonded after being translated. The database consists of a registry of 'inteins' across several species and extensive information about the features of spliced proteins and process of protein splicing. @en
language: en
publisher: New England Biolabs Inc.
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752343
landing page: http://www.inteins.com
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00506
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Info-PubMed

nbdc00506
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Info-PubMed

Info-PubMed
type: Dataset
description: PubMedに収録された文献情報（アブストラクト）からキーワードの共起やその関係性を機械的に抽出することによって得られたタンパク質間相互作用、遺伝子と疾病関連性を検索することができます。画面の操作性が優れており、流れるように操作できるのが特徴です。
description: Info-PubMed is a tool for searching the MEDLINE literature database. The site provides a Java applet with several windows for searching, examining, and organizing the literature. Requires Java, so may not work with some browsers. @en
language: en
publisher: 東京大学 大学院情報理工学系研究科
  type: Organization
  label: The University of Tokyo The Graduate School of Information Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www-tsujii.is.s.u-tokyo.ac.jp/info-pubmed/
theme: T0015
theme: T0026
theme: T0001
theme: T0007
theme: T0030
status: 休止
status: Inactive @en

nbdc00507
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IntAct

nbdc00507
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IntAct

IntAct
type: Dataset
description: IntActはオープンソースの分子間相互作用のデータベースとツールキットで構成されています。データは文献から取得したり、専門家によって蓄積されたデータから構成されています。
description: IntAct is a database of molecular interactions. The database contains information on more than 400,000 interactions gathered from primary literature. Users can search by gene, protein, or publication, among others, and the database includes manually annotated data from several other interaction databases. Software and bulk data, updoated weekly, are also available for download. @en
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19850723
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22121220
distribution: Distribution
  description: index.html
  rights: downloads
  access URL: http://www.ebi.ac.uk/intact/downloads
landing page: http://www.ebi.ac.uk/intact/main.xhtml
theme: T0010
theme: T0026
theme: T0007
status: Active @en
status: 稼動中

nbdc00508
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IntEnz

nbdc00508
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IntEnz

IntEnz
type: Dataset
alternative: Integrated relational Enzyme database @en
description: IntEnz is a resource for enzymatic nomenclature. The site contains information on naming conventions based on the interantional standards for enzyme classification. Users can browse classifications by type, access standard definitions, submit entries, and download entry data in several formats. @en
description: IntEnzは酵素命名規則にフォーカスした自由に使用可能な情報源です。IntEnzにはIUBMBの命名規則委員会の提言が含まれています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681451
distribution: Distribution
  description: downloads.jsp
  rights: index.jsp
  access URL: http://www.ebi.ac.uk/intenz/downloads.jsp
landing page: http://www.ebi.ac.uk/intenz/index.jsp
theme: T0019
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00509
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-16
source: Integbio Database Catalog
primary topic: International HapMap Project (国際HapMap計画)

nbdc00509
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-16
source: Integbio Database Catalog
primary topic: International HapMap Project (国際HapMap計画)

International HapMap Project (国際HapMap計画)
type: Dataset
title: International HapMap Project @en
description: International HapMap Project is a database of genes associated with human disease and response to pharmaceuticals. It contains genotypes, frequencies, linkage disequilibrium properties, phasing data, allocated SNPs, recombination rates and hotspot, SNP assays, perlegen amplicons, raw data, inferred genotypes and haplogroups of mitochondrial and chrY. Users are able to use the generic Genome Browser to view HapMap Project data in the context of other genomic features, as well as retrieve genotypes and frequencies for specific genomic regions. In this database, many data, software, and documentation have been made publicly available. @en
description: 国際 HapMap 計画は、ヒトにおける遺伝的多型パターンを明らかにし、病気や薬に対する反応性に関わる遺伝子を発見するための基盤を整備するプロジェクトです。この計画は、カナダ、中国、日本、ナイジェリア、英国、米国の科学者と各国政府、財団などの協力により行われています。 「Generic Genome Browser」では、プロジェクトのデータを閲覧することができます。染色体上のある領域について、遺伝子型およびアレル頻度のデータや、それ以外のゲノム情報を同時にみることができます。 染色体の１つをまるごとブラウズすることもできます。 「データ全体のダウンロード」では、現在公開されている遺伝子型のデータ、SNPリスト、連鎖不平衡に関する数値、各SNPのアレル頻度と遺伝子型頻度、タイピング詳細情報、サンプル詳細情報などを取得することができます。遺伝子型データを取得するにはID登録が必要です。 NCBIによるオリジナルサイト （http://hapmap.ncbi.nlm.nih.gov/index.html.ja） の運用は終了しました。HapMap Projectのアーカイブデータは引き続きFTPサイト （ftp://ftp.ncbi.nlm.nih.gov/hapmap/） からダウンロードできます。 また、運用終了の経緯と今後の情報がこちらのページ （https://www.ncbi.nlm.nih.gov/variation/news/NCBI_retiring_HapMap/） に記載されています。
language: ja
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: 00README.txt
  description: xml docs
  description: 00README.TXT
  rights: guidelines hapmap data.html.en
  access URL: http://hapmap.ncbi.nlm.nih.gov/downloads/index.html.en
landing page: http://hapmap.ncbi.nlm.nih.gov/
landing page: http://hapmap.ncbi.nlm.nih.gov/index.html.ja
theme: T0021
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: 運用終了
status: Closed @en

nbdc00510
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IS FINDER

nbdc00510
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IS FINDER

IS FINDER
type: Dataset
description: 古細菌や真正細菌から単離された転位因子配列情報を提供しています。名前、長さ、起源、ファミリー名などで検索することが可能で、BLAST検索も使用することができます。
description: IS FINDER is a database of bacterial and archaeal insertion sequences. The database contains sequence and position information on insertion elements. Links to external databases are provided for each entry. @en
language: en
publisher: Laboratoire de Microbiologie et Genetique Moleculaire
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381877
landing page: http://www-is.biotoul.fr/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0027
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00511
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IUBMB Nomenclature

nbdc00511
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IUBMB Nomenclature

IUBMB Nomenclature
type: Dataset
alternative: INTERNATIONAL UNION OF BIOCHEMISTRY AND MOLECULAR BIOLOGY @en
description: IUBMB Nomenclature is a database of enzyme nomenclature standards. The site contains specific information on standard naming and classification of enzymes based on internationally recognized standards. Classifications for other (non-enzymatic) proteins are also indicated. @en
description: IUBMB、IUPACの命名規則に関する情報を提供しています。文書全体をWeb上で閲覧できるように変換しており、見やすいように修正を加えています。
language: en
publisher: University of London
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://www.chem.qmul.ac.uk/iubmb
theme: T0019
theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00512
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-26
source: Integbio Database Catalog
primary topic: J-GLOBAL

J-GLOBAL
type: Dataset
alternative: 科学技術総合リンクセンター
description: J-GLOBALは、「つながる、ひろがる、ひらめく」をコンセプトに、これまで個別に存在していた科学技術情報をつなぎ、発想を支援するサービスです。 登載された情報間のつながりをもとに、JST内外の良質な科学技術情報から意外な発見や異分野の知を入手する機会を提供いたします。登録対象としている基本情報は、研究者、文献、特許、研究課題、機関、科学技術用語、化学物質、遺伝子、資料、研究資源です。 J-GLOBALの使い方について、YouTube「JST channel ( https://www.youtube.com/watch?v=ifq9OonO-Hg )」からご覧いただけます。
language: ja
language: en
publisher: 国立研究開発法人科学技術振興機構
  type: Organization
  address country: 日本
landing page: http://jglobal.jst.go.jp/
theme: T0031
theme: T0001
theme: T0011
theme: T0030
status: 稼動中

nbdc00513
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-08-02
source: Integbio Database Catalog
primary topic: J. Craig Venter Institute

nbdc00513
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-08-02
source: Integbio Database Catalog
primary topic: J. Craig Venter Institute

J. Craig Venter Institute
type: Dataset
description: J. Craig Venter Instituteのホームページです。4つの研究グループについての研究内容、スタッフの情報が記載されています。以下のデータベースの情報、リンクがあります。 ・Castor Bean Database（http://castorbean.jcvi.org/index.php） ：トウゴマを対象に全ゲノムアセンブリとアノテーションした結果が登録されています。ゲノムブラウザの閲覧、blast検索は機能していませんが、データのダウンロードが可能です。 ・Medicago truncatula Genome Database（https://www.jcvi.org/medicago-truncatula-genome-database） ：タルウマゴヤシの全ゲノム、EST、BAC末端配列のデータベースです。発現情報や変異情報も含まれています。現在は外部の独立したデータベース（http://www.medicagogenome.org） になっています。 ・Forensics Microbiome Database（http://fmd.jcvi.org） ：ヒトの複数の身体部位から得られた16S rRNAマイクロバイオームデータを可視化および比較するリソースです。 被験者の地理的位置の情報を組み込んでいることが特徴です。
description: J. Craig Venter Institute is the website of a major genome biology laboratory. The site contains informaton about the Institute and projects being conducted there, inculding programs focused on mammalian genomics, microbial and environmental genomics, infectious disease, synthetic biology, and informatics. News about and results of several projects are provided. It contains following databases: 1) Castor Bean Database (http://castorbean.jcvi.org/index.php) 2) Medicago truncatula Genome Database (https://www.jcvi.org/medicago-truncatula-genome-database) 3) Forensics Microbiome Database (http://fmd.jcvi.org) @en
language: en
publisher: J. Craig Venter Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.jcvi.org/
theme: T0031
theme: T0001
theme: T0002
status: Active @en
status: 稼動中

nbdc00514
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Jabion

Jabion
type: Dataset
alternative: 日本語バイオポータルサイト
description: ジャビオンは日本語で最新の生物学や生命科学をわかりやすく解説した総合情報サイトです。コラム、注目ニュース、用語解説、研究最前線に関する情報に加え、GenomeViewer、データベースビューア、文献検索のメニューが含まれています。
language: ja
publisher: 情報・システム研究機構 国立情報学研究所
  type: Organization
  address country: 日本
landing page: http://www.bioportal.jp/ja/
theme: T0021
theme: T0031
theme: T0001
theme: T0030
status: 休止

nbdc00515
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-12-12
source: Integbio Database Catalog
primary topic: JACVSD

nbdc00515
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: JACVSD

JACVSD
type: Dataset
alternative: Japan Adult Cardiovascular Surgery Database (日本成人心臓血管外科手術データベース)
alternative: Japan Adult Cardiovascular Surgery Database @en
description: 心臓血管外科手術を受ける患者の術前後の医学的身体状況と手術内容・結果を掲載したデータベースです。現在日本の心臓血管外科手術の結果に関する状況は全国規模では把握されておらず、どのような手術がどれくらいの危険性でなされているのか、また、手術前の状態が良好な方と重症な方とで手術の危険性にどの程度違いがあるのか、全国規模での研究はなされておりません。そこで、心臓血管外科手術を受ける患者さんの手術前の医学的身体状況と行われた手術およびその結果を調査し、これをデータベースとして情報収集し全国的に集計することにより、日本の心臓血管外科学の進歩、ひいては国民全体の福祉健康の増進に寄与することを目的としています。
description: JACVSD is an integrated research database of performance measures to assess the quality of cardiovascular surgery in Japan. This database collects the data, based on the Society of Thoracic Surgeons (STS) National Database, using internet and carries out statistical analysis in a focused manner. It allows to compare among hospitals not only in Japan but also worldwide is feasible because preoperative risk factors are based on those of European and American standard. It requires users to access with a UMIN-ID and a password. @en
language: ja
language: en
publisher: 日本心臓血管外科手術データベース機構
  type: Organization
  label: Japan Cardiovascular Surgery Database Organization (JCVSDO) @en
  address country: Japan @en
  address country: 日本
landing page: http://www.jacvsd.umin.jp
landing page: http://www.jacvsd.umin.jp/P2e.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00516
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: 日本産アリ類画像データベース

nbdc00516
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: 日本産アリ類画像データベース

日本産アリ類画像データベース
type: Dataset
title: Japanese Ant Image Database @en
description: 本データベースは、アリ類分類に関する最新の知識を主として学術研究および教育普及に役立てるために、アリ類データベース作成グループにより編纂された高品質画像を中心としたデータベースで、インターネットおよびCD-ROMで利用することができます。「アリ学入門」、「用語の解説」、「日本産アリ類の最新の分類体系」、「日本産アリ類の名前索引」、「日本のアリのタイプ標本」、「世界のアリ」などアリに関する豊富なメニューがあり、アリの専門知識がなくても使用できる幾通りもの検索方法を用意することで、一般の人にも閲覧しやすいシステムとなっています。
description: Japanese Ant Image Database is an image database of ant species recorded in Japan. Each entry contains images with scale bars, the scientific and Japanese names, description, a distribution map, remarks and references. Users can search ant genera and species from distribution regions in Japan, regional commonness and rarity, or name indexes. This database also provides the menu for beginners, such as Gakken's Photo Encyclopedia 'Ants', terminology for myrmecology and information on type specimens of Japanese ants. @en
language: ja
language: en
publisher: 宮城教育大学
  type: Organization
  label: Miyagi University of Education @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: Copyright.html
  access URL: http://ant.edb.miyakyo-u.ac.jp/J/GUIDE/CDROM_2008.HTM#2008CDdownload
  access URL: http://ant.edb.miyakyo-u.ac.jp/E/GUIDE/CDROM.HTM
landing page: http://ant.edb.miyakyo-u.ac.jp/J/index.html
landing page: http://ant.edb.miyakyo-u.ac.jp/E/index.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/36668
theme: T0029
theme: T0019
theme: T0027
status: Active @en
status: 稼動中

nbdc00517
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-03-23
source: Integbio Database Catalog
primary topic: JCGGDB

nbdc00517
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-03-23
source: Integbio Database Catalog
primary topic: JCGGDB

JCGGDB
type: Dataset
alternative: Japan Consortium for Glycobiology and Glycotechnology Database @en
alternative: Japan Consortium for Glycobiology and Glycotechnology Database (日本糖鎖科学統合データベース)
description: 産総研の糖鎖遺伝子機能解析チーム、糖鎖分子情報解析チーム、レクチン応用開発チームが保有する６種類のデータベース（GMDB、LfDB、レクチンと糖鎖の相互作用プロファイリングDB、GGDB:糖鎖関連遺伝子DB、KEM-C:糖転移酵素の基質特異性に関するDB、GlycoProtDB:マウス・線虫等のN型糖タンパク質DB）を公開し、統合します。
description: JCGGDB is a portal database of all glycan-related data in Japan. It contains information of large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals. It allows to search by keywords, glycan structure, cheminformatics, infection, disease or experimental protocols. @en
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: https://jcggdb.jp/index_en.html
landing page: https://jcggdb.jp
theme: T0015
theme: T0023
theme: T0008
theme: T0011
status: Active @en
status: 稼動中

nbdc00518
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-11
source: Integbio Database Catalog
primary topic: JCRB細胞バンク

nbdc00518
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-30
source: Integbio Database Catalog
primary topic: JCRB細胞バンク

JCRB細胞バンク
type: Dataset
title: JCRB Cell Bank @en
description: JCRBが保有する培養細胞を分譲するためのデータベースです。ヒト、マウス、ラットなどの組織細胞に加え、高発がん性遺伝病患者由来細胞、発光細胞（Luc発現細胞）、ヒトiPS細胞、マウスES細胞、霊長類細胞株コレクション、日本人由来初代培養細胞も提供しています。細胞名、由来、組織名によるリストやキーワードによる検索が可能です。また、細胞培養と保存に関する啓蒙情報も掲載しています。
description: The JCRB Cell Bank database organizes information for distribution of cell cultures. Information is available on how to order, culture, and preserve cells. @en
language: ja
language: en
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  label: National Institutes of Biomedical Innovation, Health and Nutrition @en
  address country: Japan @en
  address country: 日本
landing page: http://cellbank.nibiohn.go.jp
landing page: http://cellbank.nibiohn.go.jp/english/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10105
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9534
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10036
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10141
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9925
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9541
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9685
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9394
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9542
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
status: Active @en
status: 稼動中

nbdc00519
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-01
source: Integbio Database Catalog
primary topic: JenaLib

nbdc00519
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-01
source: Integbio Database Catalog
primary topic: JenaLib

JenaLib
type: Dataset
alternative: Jena Library of Biological Macromolecules @en
description: JenaLib is a database of molecular structures. The database contains solved structures biopolymers, including homogenous and heterogenous entities. The database contains several subsections based on constituent molecules, with links to PDB structures for each biopolymer. The database also contains tools for domain classification and structural analysis. @en
description: 生体高分子の立体構造情報を収録しているデータベースです。Protein Data Bank (PDB) とNucleic Acid Database (NDB)を情報源としています。対象分子はタンパク質、核酸、RNA、糖鎖、ペプタイボルで、立体構造の画像と解析情報が表示されます。
language: en
publisher: Fritz Lipmann Institute - Leibniz Institute for Age Research
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752308
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9154005
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8872391
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592237
distribution: Distribution
  access URL: http://jenalib.fli-leibniz.de/ImgLibPDB/pages/entry_list-all.html
landing page: http://jenalib.fli-leibniz.de
theme: T0022
theme: T0029
theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00520
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KaFTom

nbdc00520
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KaFTom

KaFTom
type: Dataset
alternative: Kazusa Full-length Tomato cDNA Database @en
description: KaFTom is a database of tomato expressed sequences. The database contains EST reads from several different tissues of the MicroTom cultivar. Data were obtained by sequencing cDNA clones and are available for browsing, BLAST search, and bulk download. @en
description: 矮性トマト品種マイクロトムの完全長cDNAに由来するESTおよび完全長配列のデータベースです。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15975739
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20350329
distribution: Distribution
  access URL: http://www.pgb.kazusa.or.jp/kaftom/dl.html
landing page: http://www.pgb.kazusa.or.jp/kaftom/
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: T0017
status: Active @en
status: 稼動中

nbdc00521
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KAIKO Proteome Database

nbdc00521
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: KAIKO Proteome Database

KAIKO Proteome Database
type: Dataset
description: This database contains two-dimensional electrophoretic (proteome) information for the silkworm. Spot information depending on tissues or developmental stage can be searched by keywords and image selections. @en
description: カイコの2次元電気泳動（プロテオーム）情報を格納したデータベースです。組織・発生段階毎のスポット情報をキーワード検索や画像選択により参照できます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://kaiko2ddb.dna.affrc.go.jp/cgi-bin/search_2DDB.cgi
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0029
theme: T0007
status: Active @en
status: 稼動中

nbdc00522
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KAIKObase

nbdc00522
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: KAIKObase

KAIKObase
type: Dataset
description: カイコゲノムの遺伝地図と物理地図情報が統合されたデータベースです。複数のビューアが存在し、マーカ・遺伝子・形質等のゲノム位置や注釈(アノテーション)情報をグラフィカルに参照できます。またお手持ちの配列とカイコゲノム配列との類似性検索(BLAST)も行えます。
description: This database contains both the genetic and physical map information for the silkworm genome. A variety of viewers are available to graphically view markers, genes, and genomic positions of traits, as well as annotation information. Additionally, BLAST searches can be performed with user-provided sequences against the silkworm genome sequence. This is a part of SILKWORM GENOME RESEARCH PROGRAM (http://integbio.jp/dbcatalog/en/record/nbdc00950). @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19843344
landing page: http://sgp.dna.affrc.go.jp/KAIKObase/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0001
theme: T0021
status: Active @en
status: 稼動中

nbdc00523
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KAIKOBLAST

nbdc00523
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: KAIKOBLAST

KAIKOBLAST
type: Dataset
description: カイコの塩基配列、アミノ酸配列の相同性検索(BLAST)を行うためのシステムです。お手持ちの配列とカイコ関連配列との相同性検索を行えます。
description: This is a system to allow BLAST searches of silkworm DNA and amino acid sequences. The BLAST searches can be performed with user-provided sequences against silkworm sequences. This is a part of SILKWORM GENOME RESEARCH PROGRAM (http://integbio.jp/dbcatalog/en/record/nbdc00950). @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://kaikoblast.dna.affrc.go.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0001
theme: T0007
theme: T0021
status: Active @en
status: 稼動中

nbdc00524
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KAIKOGAAS

nbdc00524
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: KAIKOGAAS

KAIKOGAAS
type: Dataset
alternative: KAIKO Genome Automated Annotation System @en
description: This is a system that automatically predicts gene structures coding for proteins using existing silkworm genomic sequences. The predictions are made by combining the analytical results of several tools (geneScan, FgeneSH, HMMER). Users can browse previous predictions and input their own sequences for new predictions. This is a part of SILKWORM GENOME RESEARCH PROGRAM (http://integbio.jp/dbcatalog/en/record/nbdc00950). @en
description: カイコゲノム配列を元にタンパク質をコードする遺伝子構造を自動予測するシステムです。予測処理では複数の解析ツール(GeneScan、FGENESH、HMMER等)の解析結果を統合して行なっています。カイコゲノム配列に対する本システムの予測結果が参照できます。またお手持ちの塩基配列に対しての予測処理もできます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://kaikogaas.dna.affrc.go.jp
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0001
theme: T0021
status: Active @en
status: 稼動中

nbdc00525
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KaPPA-View 4

nbdc00525
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KaPPA-View 4

KaPPA-View 4
type: Dataset
alternative: Kazusa Plant Pathway Viewer
description: This web-based tool, KaPPA-View4, represents -omics data on plant metabolic pathway maps that users upload. Differences in gene expressions and metabolite accumulation between samples are visually represented as hue of the gene and metabolite symbols. gene-to-gene and metabolite-to-metabolite relationships, including correlation coefficients of gene co-expressions can be overlayed on the pathway maps. This helps to better understand transcripts and metabolites when examining the roles of genes in the metabolic pathway. The system has been revised, and the processing speed was improved compared to previous versions. Both Windows and Mac OS X are fully supported now and all features of the database are available. Users can use their own metabolic pathway maps for analyses. After uploading DNA microarray or metabolite data, fitting data for each gene or compound is displayed on a metabolic pathway map. @en
description: 遺伝子の発現データと代謝産物の蓄積データを、代謝経路マップ上で同時に表示することができるビューワーです。ユーザー自身のDNAマイクロアレイデータや代謝産物分析データを、インターネットブラウザを介してKaPPA-View4にアップロードすると、KaPPA-View4は、代謝経路マップ上に各遺伝子や化合物のデータを当てはめて表示します。デフォルトでは、シロイヌナズナ、イネ、ミヤコグサ、トマトに対応する約150枚の代謝マップが準備されています。ユーザーが作成した代謝マップを利用することもできます。
language: ja
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21097783
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16010003
landing page: http://kpv.kazusa.or.jp/en/
landing page: http://kpv.kazusa.or.jp/kpv4/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4513
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4577
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3689
theme: T0024
theme: T0010
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4565
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34305
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/29760
status: Active @en
status: 稼動中

nbdc00526
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: KATANA

nbdc00526
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KATANA

KATANA
type: Dataset
alternative: Kazusa Arabidopsis thaliana Annotation Abstract
description: KATANA (Kazusa Arabidopsis thaliana Annotation Abstract) is a guide to help in the search of Arabidopsis genomic information in concerned public databases, because naming conventions and gene annotations may be different between different databases. It can be searched by annotation ('ANNOME'), metabolic pathway or gene ontology and is linked to detailed information at the original sites. It is part of the 'Green Biotechnology Program' supported by New Energy and Industrial Technology Development (NEDO). @en
description: シロイヌナズナのゲノム情報を様々な公共データベースから取得することができます。遺伝子とタンパク質、遺伝子ファミリー、遺伝子オントロジー（GO）ターム、Massively Parallel Signature Sequencing法（MPSS）の実験から得られた代謝経路や遺伝子発現データの情報とアノテーションが含まれます。代謝経路とGOタームを用いた高度な検索も行うことができます。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.kazusa.or.jp/katana/index.html
landing page: http://www.kazusa.or.jp/katana
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
status: Active @en
status: 稼動中

nbdc00527
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TogoAnnotation

TogoAnnotation
type: Dataset
description: ソーシャルブックマークによる文献情報集積プラットフォームです。
language: ja
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  address country: 日本
landing page: http://togo.annotation.jp
theme: T0001
theme: T0030
status: 休止

nbdc00528
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KazusaMart1.0

nbdc00528
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KazusaMart1.0

KazusaMart1.0
type: Dataset
description: KazusaMart is a data integration system of plant and microbial genomic data and was developed using BioMart. @en
description: KazusaMartはかずさDNA研究所が提供するゲノムスケールの遺伝子情報管理システムです。植物および関連微生物を対象としており、現在シアノバクテリア34生物種が公開されています。システムはBioMartを利用しています。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://mart.kazusa.or.jp/biomart/martview
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1117
status: 休止
status: Inactive @en

nbdc00529
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: KCGD

nbdc00529
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: KCGD

KCGD
type: Dataset
alternative: Kyoto Chlamydomonas Genome Database @en
description: This is a genome database for the green algae Chlamydomonas. Users are required to contact the database maintainer. Chlorophyll DNA was first discovered in Chlamydomonas, and is used worldwide as a model organism for genetic research on photosynthesis, reproduction, and flagellar motors, because it allows DNA transformation between chlorophyll, mitochondrial, and nuclear genomes. @en
description: 緑藻クラミドモナスのゲノムデータベースです。データベースの閲覧には、データベース運用者とコンタクトを取ることが必要です。クラミドモナスは、最初に葉緑体DNAが発見された生物で、葉緑体、ミトコンドリアと核の３つのゲノムについてDNA形質転換が可能なことから、光合成、生殖、鞭毛モーターなどの遺伝子研究のモデル生物として世界中で利用されています。研究室ではゲノムライブラリー・EST・cDNAアレイが整備されています。次世代シーケンサーを用いた大規模遺伝子発現解析も進めており、収集した発現データはKCGDから公開する予定です。
language: en
publisher: 京都大学 大学院生命科学研究科
  type: Organization
  label: Kyoto University Graduate School of Biostudies @en
  address country: Japan @en
  address country: 日本
landing page: http://www.molecule.lif.kyoto-u.ac.jp/kcgd.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3055
theme: T0024
theme: T0001
theme: T0002
status: Active @en
status: 稼動中

nbdc00530
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG

nbdc00530
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-03
source: Integbio Database Catalog
primary topic: KEGG

KEGG
type: Dataset
alternative: Kyoto Encyclopedia of Genes and Genomes @en
alternative: Kyoto Encyclopedia at Genes and Genomes
description: KEGG is an integrated database for interpretation of biological systems from genomic and molecular-level information. KEGG consists of 16 main databases categorized into systems information, genomic information and chemical information. This database features to map elementary datasets (genes, small molecules, etc) in each KEGG database to network datasets (pathway maps, hierarchical lists, etc). Users can perform keyword search against the entire KEGG database, as well as BLAST/FASTA search and SIMCOMP search. @en
description: KEGGデータベースシステム全体の統括ページです。データタイプごと（PATHWAY、BRITE、DISEASE、DRUG、GENES、GENOME、COMPOUND、GLYCAN、REACTION）、生物種ごとにアクセスできます。KEGG MapperやKEGG Atlas、KASSなど各種解析ツールの実行画面にもアクセスできます。 なお、KEGG MEDICUSのデータサブセットは GenomeNet FTPサイトから無料でダウンロードできます。アカデミックユーザがその他のFTPサイトにあるデータをダウンロードするにはKEGG FTPのページからライセンスの登録(有料)が必要です ( https://www.bioinformatics.jp/ja/keggftp.html )。また、非アカデミックユーザや、アカデミックユーザがKEGGデータを利用したサービスを提供するためにダウンロードする場合は、商用ライセンス（有料）になります。
language: ja
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681412
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381885
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9287494
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24214961
distribution: Distribution
  description: download
  rights: legal.html
  access URL: http://www.kegg.jp/kegg/download/
landing page: http://www.kegg.jp/kegg/
landing page: http://www.kegg.jp/kegg/kegg_ja.html
theme: T0031
status: Active @en
status: 稼動中

nbdc00531
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG DAS

nbdc00531
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG DAS

KEGG DAS
type: Dataset
alternative: KEGG Distributed Annotation System
description: KEGGに含まれる全生物のゲノムマップ情報に対して、DAS（Distributed Annotation System）サービスを提供する高度ゲノムデータベースシステムです。GBrowse GUIを用いて、ウェブブラウザからグラフィカルに利用できます。DASプロトコルを用いてプログラムからの利用も可能です。 ※GBrowse2に移行のため、現在サービスを停止しています。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
landing page: http://keggdas.hgc.jp
theme: T0001
status: 休止
status: Inactive @en

nbdc00532
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG GENES Database

nbdc00532
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-28
source: Integbio Database Catalog
primary topic: KEGG GENES Database

KEGG GENES Database
type: Dataset
alternative: Molecular building blocks of life in the genomic space
description: KEGG GENESは、全ゲノム配列が決定された生物種について、その遺伝子セットをRefSeq その他の公共データベースから自動生成し、KEGG 独自のアノテーション（KO アノテーション）を行っているデータベースです。 以前、VGENES (http://integbio.jp/dbcatalog/record/nbdc00820) や VGENOME (http://integbio.jp/dbcatalog/record/nbdc00821) に収録されていたウィルスに関する情報も収録されています。
description: KEGG geneS is a catalog of gene information for multiple species with species-specified gene information for all species with complete genome sequences. The database references primary sources and provides pathway, ortholog, paralog, and motif searching functions. Results of gene searches include nucleotide and protein information. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README.genes
  rights: legal.html
  access URL: http://www.kegg.jp/kegg/download/
landing page: http://www.genome.jp/kegg/genes.html
theme: T0021
theme: T0001
theme: T0007
status: Active @en
status: 稼動中

nbdc00533
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG GLYCAN

nbdc00533
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG GLYCAN

KEGG GLYCAN
type: Dataset
alternative: Glycome informatics resource integrating genomics and chemistry @en
description: 文献で報告されている糖鎖構造と関連するパスウェイを収集したデータベースです。KEGG Pathwayとのリンクにより、糖鎖の生合成および分解反応や関連酵素の情報も得られます。
description: KEGG GLYCAN is a database of glycan structures. The database contains structures of glycans involved in KEGG reactions and specifies several parameters of the glycans, as well as collecting links to other glycan-relevant databases. The database is searchable by KEGG G-index ID. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18546491
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16014746
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15215393
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19327755
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16362924
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16159923
landing page: http://www.genome.jp/kegg/glycan/
theme: T0023
theme: T0026
theme: T0008
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00534
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Klotho

nbdc00534
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Klotho

Klotho
type: Dataset
alternative: Biochemical Compounds Declarative Database
description: Klothoは生物化学で始まる生物学的プロセスをモデル化しようとする試みです。このデータベースでは分子構造を検索することができます。
language: en
publisher: University of Missouri Bioinformatics Consortium
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.biocheminfo.org/klotho
theme: T0023
status: 休止
status: Inactive @en

nbdc00535
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMaiDB

nbdc00535
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMaiDB

KMaiDB
type: Dataset
alternative: Keio Mutation autoimmune database @en
description: MutationViewのサブデータベースで、自己免疫関連疾患に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
description: KMaiDB is a database of mutations involved in autoimmune disorders, assembled by manual curation of OMIM. A Java browser of mutations known to be involved in disease can be used to browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=ai
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00536
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMbloodDB

nbdc00536
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMbloodDB

KMbloodDB
type: Dataset
alternative: Keio Mutation blood database
description: MutationViewのサブデータベースで、血液関連疾患に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
description: KMbloodDB is a database of mutations involved in blood disorders. The database contains a Java browser of mutations known to be involved in disease and was assembled by manual curation of OMIM. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=blood
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00537
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMbrainDB

nbdc00537
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMbrainDB

KMbrainDB
type: Dataset
alternative: Keio Mutation brain database @en
description: KMbrainDB is a database of mutations involved in neurological disease with a Java browser of mutations known to be involved in disease. It was assembled by manual curation of OMIM. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
description: MutationViewのサブデータベースで、パーキンソン病、アルツハイマー病に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=brain
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00538
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMcancerDB

nbdc00538
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMcancerDB

KMcancerDB
type: Dataset
alternative: Keio Mutation cancer database
description: MutationViewのサブデータベースで、乳ガン、網膜芽細胞腫、神経線維腫症に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
description: KMcancerDB is a database of mutations involved in various cancers. The database contains a Java browser of mutations known to be involved in disease and was assembled by manual curation of OMIM. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17233812
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=cancer
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00539
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMDB/MutationView

nbdc00539
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMDB/MutationView

KMDB/MutationView
type: Dataset
alternative: Keio Mutation Databases @en
description: ヒト疾患に関連する遺伝子変異をOMIM、GDB、文献より収集し、人体・臓器の模式図上への疾患遺伝子/発症疾患名のマッピング表示や、染色体上への疾患遺伝子のマッピング表示を行っています。変異による遺伝子構造の変化 (アミノ酸変化、スプライシング変化など）も掲載されています。
description: KMDB is a database of human mutations. The site has html and java functionalities to explore mutations affecting several anatomical systems as well as sub-databases for each anatomical system. The Java functionality is extensively linked such that users can choose organ, disease, or gene and obtain information on published connections between genes and diseases. Causative mutations and gene structures are also available. MutationView software can also be downloaded. For academic use only. @en
language: en
publisher: 慶應義塾大学
  type: Organization
  label: Keio University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592275
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12762231
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125127
landing page: http://www.mutationview.jp/MutationView/jsp/index.jsp
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00540
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMearDB

nbdc00540
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMearDB

KMearDB
type: Dataset
alternative: Keio Mutation ear database @en
description: KMearDB is a database of mutations involved in auditory disorders. It contains a Java browser of mutations known to be involved in disease and was assembled by manual curation of OMIM. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
description: MutationViewのサブデータベースで、聴覚障害に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=ear
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00541
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMeyeDB

nbdc00541
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMeyeDB

KMeyeDB
type: Dataset
alternative: Keio Mutation eye database
description: MutationViewのサブデータベースで、網膜色素変性症、緑内障、内障に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
description: KMeyeDB is a database of mutations involved in vision disorders and contains a Java browser of mutations known to be involved in disease. It was assembled by manual curation of OMIM. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10612828
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847228
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20232414
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=eye
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00542
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMheartDB

nbdc00542
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMheartDB

KMheartDB
type: Dataset
alternative: Keio Mutation heart database @en
description: MutationViewのサブデータベースで、心筋症に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
description: KMheartDB is a database of mutations involved in heart disease assembled by manual curation of OMIM. The database contains a Java browser of mutations known to be involved in disease. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=heart
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00543
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMmuscleDB

nbdc00543
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMmuscleDB

KMmuscleDB
type: Dataset
alternative: Keio Mutation muscle database @en
description: MutationViewのサブデータベースで、筋ジストロフィーに関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
description: KMmuscleDB is a database of mutations involved in muscular disorders, with a Java browser of mutations known to be involved in disease. The database was assembled by manual curation of OMIM. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=muscle
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00544
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMsyndromeDB

nbdc00544
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: KMsyndromeDB

KMsyndromeDB
type: Dataset
alternative: Keio Mutation syndrome database
description: KMsyndromeDB is a database of mutations involved in syndromic diseases. The database contains a Java browser of mutations known to be involved in disease. It was assembled by manual curation of OMIM. Users can browse chromosomes to find disease-associated genes or genes to find causative mutations. @en
description: MutationViewのサブデータベースで、Waardenburg症候群、QT延長症候群に関するデータを掲載しています。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
landing page: http://www.mutationview.jp/MutationView/jsp/mutview/index.jsp?db=syndrome
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00545
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KNApSAcK

nbdc00545
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KNApSAcK

KNApSAcK
type: Dataset
alternative: A Comprehensive Species-Metabolite Relationship Database @en
description: 生物種と代謝産物の関係を体系化することを目的に、二次代謝産物データベースシステムKNApSAcKを開発し、無償で公開しています。KNApSAcKは分子式、分子量、生物種名や実験によって得られたマススペクトル解析結果からの化合物検索や、生物系統からの情報検索等がおこなえます。
description: This database provides information on how species and metabolites relate to each other. Searches can be done on the Web by entering the organism's name or that of the metabolite or its molecular weight or formula. The site also offers the option to download the database and work offline. @en
language: en
publisher: 奈良先端科学技術大学院大学
  type: Organization
  label: Nara Institute of Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22123792
distribution: Distribution
  rights: KNApSAcKManual Japanese.html
  access URL: http://kanaya.naist.jp/KNApSAcK/
landing page: http://kanaya.naist.jp/KNApSAcK/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0023
theme: T0010
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00546
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KOP

nbdc00546
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: KOP

KOP
type: Dataset
alternative: Kazusa ORFeome Project @en
description: ヒト蛋白質発現クローン（Flexi ORF clones）データベースです。ORF配列やアミノ酸配列、InterProScanの結果、transmembrane regionの予測結果、OMIM databaseの疾病遺伝子に対するホモロジー検索の結果が登録されています。遺伝子名検索やキーワード検索、ホモロジー検索が可能です。機能別に分類された一覧も用意されています。
description: KOP is a database of human ORF clones data with two collections of clones that can be used for functional studies and a list of genes grouped by function. Clones are chosen based on the KIAA human ORF set and are available for order. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16769688
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16769670
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18316326
landing page: http://www.kazusa.or.jp/kop/
theme: T0021
theme: T0015
theme: T0029
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: Active @en
status: 稼動中

nbdc00547
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: L1Base

nbdc00547
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: L1Base

L1Base
type: Dataset
alternative: Annotation of Full-Length, Intact L1 Element
description: L1Baseはヒトやげっ歯類ゲノムに存在する有効と思われるL1 Insertion専門のデータベースです。２つのORFが欠損していないL1 Element配列全長、そして、欠損していないORF2と欠損しているORF1を持つL1 Element配列が含まれています。その他にも完全長を得られていないL1Element配列（6000bp以上）データも含まれています。
description: L1Base is a database of mobile elements in the human genome. The database contains position and activity information on L1 elements annotated from human genome sequences. T @en
language: en
publisher: University of Wurzburg
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17963496
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608246
landing page: http://line1.bioapps.biozentrum.uni-wuerzburg.de/l1base.php
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00548
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Labome.Org

nbdc00548
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Labome.Org

Labome.Org
type: Dataset
description: Labome.Org is a database organizing biomedical knowledge. It contains information of grants, publications, and patents around research topics, genomes and genes, scientific experts, and species for easy browsing and searching. @en
description: Labome.Orgは研究助成金、論文、特許、研究テーマに関連したWebページに関する情報を掲載しており、ゲノムや遺伝子、科学者や生物種を簡単に検索閲覧できるページです。
language: ja
language: en
publisher: National Center for Biotechnology Information, Computer Retrieval of Information on Scientific Projects, United States Patent and Trademark Office
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.labome.org/
theme: T0030
status: Active @en
status: 稼動中

nbdc00549
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: LEGENDA （アーカイブ）

nbdc00549
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-27
source: Integbio Database Catalog
primary topic: LEGENDA （アーカイブ）

LEGENDA （アーカイブ）
type: Dataset
title: LEGENDA (Archive) @en
alternative: Literature-Extracted Gene-Disease Associations @en
description: PubMedに登録されている文献に記載されているヒト遺伝子/タンパク質名、遺伝子機能名、疾患名、化合物名のうち、2つの用語が共起した文献を検索するシステムです。遺伝子2つのように同じタイプについても検索できます。独自の同義語辞典や共起データベースを利用しています。 産業技術総合研究所によるオリジナルサイト（http ://hinv.jp/legenda/）の運用は終了しました。LEGENDAのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
description: Legenda is a database of articles about genes and the diseases they have been found to be linked to. A simple keyword search provides the user with a list of abstracts of relevant publications grouped under the headings gene, disease, gene function and substance. These headings indicate the fields in which appropriate publications with links to the keyword used may be found. Each publication comes with full references. @en
language: ja
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/legenda/download.html
landing page: https://dbarchive.biosciencedbc.jp/jp/legenda/desc.html
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00550
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: LSDB Archive

nbdc00550
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: LSDB Archive

LSDB Archive
type: Dataset
alternative: 生命科学系データベースアーカイブ (Life Science Database Archive)
alternative: Life Science Database Archive @en
description: Life Science Database Archive is an archive of databases generated by life scientists in Japan as national public goods. This archive contains databases deposited from research institutions with metadata in a unified format to search datasets easily. Users can search for datasets across metadata and databases and perform BLAST search, as well as download the whole datasets with clear terms of use. @en
description: 生命科学系データベースアーカイブは、国内のライフサイエンス研究者が生み出したデータセットをわが国の公共財としてまとめて長期間安定に維持保管しています。データ説明（メタデータ）を統一して検索を容易にすると共に、 利用許諾条件などの明示を行うことで、多くの人が容易にデータへアクセスしダウンロードを行えるようにするサービスです。
language: ja
language: en
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  label: Japan Science and Technology Agency National Bioscience Database Center @en
  address country: Japan @en
  address country: 日本
landing page: http://dbarchive.biosciencedbc.jp/
landing page: http://dbarchive.biosciencedbc.jp/index-e.html
theme: T0031
status: Active @en
status: 稼動中

nbdc00551
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: LigandBox

nbdc00551
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: LigandBox

LigandBox
type: Dataset
alternative: LIGANds Data Base Open and eXtensible
alternative: LIGANDs Data Base Open and eXtensible @en
description: LigandBox is a database of small chemical compounds for drug screening on computer docking studies. This database contains 3D molecular structures provided by Namiki Shoji Co.,Ltd. and KEGG DRUG database. Users can search chemical compounds by structural information, physical quantity, as well as keywords. @en
description: 化合物の３次元分子構造と原子荷電を収集したデータベースです。KEGG DRUGデータベースを情報源としています。
language: ja
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: lbox download.cgi
  access URL: http://ligandbox.protein.osaka-u.ac.jp/ligandbox//cgi-bin/lbox_download.cgi
  access URL: http://ligandbox.protein.osaka-u.ac.jp/ligandbox//cgi-bin/lbox_download.cgi?LANG=en
landing page: http://ligandbox.protein.osaka-u.ac.jp/ligandbox/
landing page: http://ligandbox.protein.osaka-u.ac.jp/ligandbox//cgi-bin/index.cgi?LANG=en
theme: T0022
theme: T0011
status: Active @en
status: 稼動中

nbdc00552
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Lotus japonicus (miyakogusa) EST dataset

nbdc00552
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: Lotus japonicus (miyakogusa) EST dataset

Lotus japonicus (miyakogusa) EST dataset
type: Dataset
description: This database of Lotus japonicus expressed sequences contains consensus gene sequences and EST reads, and allows for BLAST and keyword search. Data are available for download. @en
description: かずさDNA研究所で決定したミヤコグサのEST配列と、非冗長タンパク配列データベースとの間で行ったblastx検索の結果が収録されています。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15284495
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15915647
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11089912
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10907852
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10819328
distribution: Distribution
  description: index.html
  access URL: http://est.kazusa.or.jp/en/plant/lotus/EST/index.html
landing page: http://est.kazusa.or.jp/en/plant/lotus/EST/index.html
theme: T0021
theme: T0024
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34305
theme: T0002
status: Active @en
status: 稼動中

nbdc00553
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-01-29
source: Integbio Database Catalog
primary topic: Lowe Syndrome Mutation Database

nbdc00553
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: Lowe Syndrome Mutation Database

Lowe Syndrome Mutation Database
type: Dataset
description: 先天性白内障、精神発達遅滞、尿細管性アシドーシスを主な症状とするLowe症候群を引き起こす原因となっているOCRL1遺伝子の変異に関するデータベースです。 このサイトは運用を終了し、データはNDBI LOVD （http://www.ncbi.nlm.nih.gov/lovd/home.php?select_db=OCRL ）に引き継がれた後、さらにClinVar （http://integbio.jp/dbcatalog/ja/record/nbdc01514 ）に引き継がれています。
description: This is a database specifically for mutations in the OCRL1 gene, known to cause Lowe syndrome with primary symptoms such as congenital cataracts, mental retardation, and renal tubular acidosis. This site was retired, and all data were transfered to the ClinVar (http://integbio.jp/dbcatalog/en/record/nbdc01514). @en
language: en
publisher: National Human Genome Research Institute, National Institute of Health
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://research.nhgri.nih.gov/lowe/
theme: T0021
theme: T0015
theme: T0001
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 運用終了
status: Closed @en

nbdc00554
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: LSDB

nbdc00554
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: LSDB

LSDB
type: Dataset
alternative: Life Science DataBase @en
alternative: 統合ホームページ (統合データベースプロジェクト)
description: 文部科学省「統合データベースプロジェクト」のポータルサイトです。生命科学分野のデータベースカタログや横断検索、総説や特許、研究報告書の文献検索、各種ツール、バイオNLP、教材、事業説明などを提供しています。2011年4月から一部サービス (生命科学系データベースカタログ、生命科学横断検索、生命科学系データベースアーカイブ)がJSTバイオサイエンスデータベースセンターに移行されました。
description: LSDB is a portal site for the 'Integrated Database Project', which aims to improve usability and integration of Japan's life science databases. This portal site contains database portals, research tools, resources and databases for life science research. Users can search for appropriate databases using database portals ('Life science projects in Japan' and 'Database Catalog'), as well as browse protocols and video tutorials of these contents. @en
language: ja
language: en
publisher: 情報・システム研究機構 ライフサイエンス統合データベースセンター
  type: Organization
  label: Research Organization of Information and Systems Database Center for Life Science @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: ii-1-8f9e66f830b730bd30fc30e930b9
  rights: http://lifesciencedb.jp/lsdb.cgi?lng=jp&gg=policy
  access URL: http://lifesciencedb.jp/?pg=4
landing page: http://lifesciencedb.jp/
landing page: http://lifesciencedb.jp/?lng=en
theme: T0031
status: Active @en
status: 稼動中

nbdc00555
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: M Base

nbdc00555
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-11-22
source: Integbio Database Catalog
primary topic: M Base

M Base
type: Dataset
alternative: Medaka Genome Database @en
description: M Base is a database of Medaka genome resources. It contains links to EST sequence data, a linkage map, and BAC clones. Users can BLAST search the EST and BAC databases, and determine linkage from a variety of crosses. @en
description: MEBase (メダカのESTデータベース)、MLBase (メダカの連鎖地図データベース)、MBBase (メダカの人工染色体データベース)の3種類からなっています。また、メダカに関する外部リンクも使用することができます。
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://mbase.nig.ac.jp/mbase/medaka_top.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
theme: T0005
theme: T0002
status: Active @en
status: 稼動中

nbdc00556
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MachiBase

nbdc00556
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MachiBase

MachiBase
type: Dataset
alternative: A Drosophila Melanogaster 5'-end mRNA Transcription Database
description: MachiBase is a browser for the Drosophila genome. Users can search by location or keyword, and a highly customizable display is provided. Sequences were collected by 5' SAGE analysis. Bulk data is available for download. @en
description: ショウジョウバエの転写開始点に関して世界最大の情報量を提供するゲノムブラウザです。ショウジョウバエの７つの組織（胚、幼虫、老/若x雄/雌, S2（培養細胞株））から収集した約2500万個の5'-end mRNA tags (25-27塩基長) 情報を公開しています。
language: en
publisher: 東京大学 大学院新領域創成科学研究科
  type: Organization
  label: The University of Tokyo Graduate School of Frontier Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18842623
distribution: Distribution
  rights: Index
  access URL: http://machibase.gi.k.u-tokyo.ac.jp/wiki/Download
landing page: http://machibase.gi.k.u-tokyo.ac.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: T0024
theme: T0001
status: Active @en
status: 稼動中

nbdc00557
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MacroArray Analysis Page of Bradyrhizobium japonicum

nbdc00557
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MacroArray Analysis Page of Bradyrhizobium japonicum

MacroArray Analysis Page of Bradyrhizobium japonicum
type: Dataset
description: This is a database of expression analysis for Bradyrhizobium japonicum, containing gene expression data in response to various treatment conditions. A link to the original publication is also available. @en
description: 根粒菌Bradyrhizobium japonicumのゲノムワイドな発現比較およびCGH解析データをまとめています。１）芳香族化合物の分解過程における遺伝子発現解析結果、２）ダイズ種子抽出物と大豆由来フラボノイドGenisteinで誘導された遺伝子発現解析結果、３）バクテロイドと自由生活細胞の遺伝子発現比較結果、４）Bradyrhizobium japonicum株間におけるCGH比較結果が掲載されています。
language: en
publisher: 大阪大学 大学院理学研究科
  type: Organization
  label: Osaka University Graduate School of Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18511436
landing page: http://orca10.bio.sci.osaka-u.ac.jp/array02/
theme: T0024
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/375
status: Active @en
status: 稼動中

nbdc00558
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Macrophage Curated Database Index

nbdc00558
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Macrophage Curated Database Index

Macrophage Curated Database Index
type: Dataset
description: マクロファージの分化・活性化ネットワークに関する遺伝子発現情報等の大規模・総合的データから動的転写制御ネットワークを抽出し、利用するための計算戦略をイン・シリコパイプラインとして構築されています。このパイプラインを使って、マクロファージの分化・活性化に関して、分化のマスター遺伝子やクリティカルパスウェイのイン・シリコ探索及びシミュレーションによる分化・活性化の再現解析が可能です。
description: The Macrophage Curated Database Index is a database of primary literature pertaining to macrophage functionality. It is a searchable list of macrophage papers and provides links to the original publications and contains links to several studies of macrophages and features images for relevant pathways from each paper. @en
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
landing page: http://gnp.hgc.jp/macrophage/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33208
theme: T0024
theme: T0026
theme: T0001
theme: T0013
theme: T0029
status: Active @en
status: 稼動中

nbdc00559
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 牧野標本館所蔵タイプ標本データベース

nbdc00559
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-11
source: Integbio Database Catalog
primary topic: 牧野標本館所蔵タイプ標本データベース

牧野標本館所蔵タイプ標本データベース
type: Dataset
title: Makino Herbarium Type Specimen Image Database @en
description: 日本の植物分類学の草分けともいえる故牧野富太郎博士（1862～1957）が収集した植物標本約40万点を整理、保管している「牧野標本館」所蔵のタイプ標本データベースです。東京都立大学（現：首都大学東京）に寄贈された牧野博士の標本のうち、牧野博士が’新種’として発表した植物のタイプ標本（基準標本）の画像データや学名、和名、採集地などの標本情報を収録しています。学名、和名、タイプ和名、タイプ学名、採集地名のリストから検索できます。
description: Makino Herbarium Type Specimen Image Database is a database of plant type specimens based on the collection preserved at the Makino Herbarium in Tokyo Metropolitan University. Each record consists of digital images of type specimens and 13 items including scientific names, location data, type status, etc. Users can search type specimens by family names, type names, current scientific names, specimen IDs and locations. This database also provides the thumbnail list of type specimens sorted by family names. @en
language: ja
language: en
publisher: 首都大学東京
  type: Organization
  label: Tokyo Metropolitan University @en
  address country: Japan @en
  address country: 日本
landing page: http://ameba.i.hosei.ac.jp/BIDP/MakinoCD/makino/html_j/index0.html
landing page: http://ameba.i.hosei.ac.jp/BIDP/MakinoCD/makino/html_e/index0.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0029
theme: T0019
theme: T0027
status: Active @en
status: 稼動中

nbdc00560
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MCPA2

nbdc00560
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MCPA2

MCPA2
type: Dataset
alternative: 哺乳類頭蓋の画像データベース (Mammalian Crania Photographic Archive Second Edition)
alternative: Mammalian Crania Photographic Archive Second Edition @en
description: 1997年より高解像度デジタルカメラで撮影された10,956件の哺乳類頭蓋の画像集です。6方向（前面・後面・左側面・右側面・上面・下面）からの撮影は、原則として、耳眼平面[眼窩の下縁と外耳孔の上縁によって形成される平面]が水平になるように頭蓋を固定して行い、下面のみ上顎の歯列が形成する平面[骨口蓋の部分]を水平になるようにして撮影しました。 頭蓋画像は(1)系統分類一覧、(2)日本語名、(3)英語名、(4)学名 から検索することができます。各標本につき、左右前後上下方向の6つの写真（測径器付き）と、系統分類名、性別、年齢が表示されます。いくつかの種については生態写真を確認することができます。霊長類の標本には下顎骨の画像が付いています。画像および標本情報と計測値データはダウンロードが可能です。
description: MCPA2 is a collection of 10,956 photographs of mammalian crania, which have been taken with a high-resolution digital camera. Each entry contains photographs from six different angles (anterior, posterior, left, right, superior, and inferior) with caliper measurements and information (taxonomy, sex, and age). Some entries also contains photographs of crania with the mandible (only Primates) or pictures of living mammals. This database allows to browse data using phylogenetic table, Japanese name, English name, scientific name, or the order and genus lists. It provides pictures via FTP, specimens' text information and measurements, and current HTML data for this site except image files for downloads. @en
language: ja
language: en
publisher: 獨協医科大学
  type: Organization
  label: Dokkyo Medical University @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: copyright.html
  access URL: http://macro.dokkyomed.ac.jp/mammal/en/mammal.html
  access URL: http://macro.dokkyomed.ac.jp/mammal/jp/mammal.html
landing page: http://macro.dokkyomed.ac.jp/mammal/en/mammal.html
landing page: http://macro.dokkyomed.ac.jp/mammal/jp/mammal.html
theme: T0014
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/40674
status: Active @en
status: 稼動中

nbdc00561
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: McSyBi

nbdc00561
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-01-21
source: Integbio Database Catalog
primary topic: McSyBi

McSyBi
type: Dataset
alternative: Multi-document Clustering System for Biomedicine
description: McSyBi is a site for searching related literature. The site consists of a search function that queries a database of clustered literature references. Users can query by PMID. Not all papers are represented. @en
description: PubMed検索結果を用いた、生体臨床医学のための文献クラスタリングシステムです。
language: en
publisher: 東京大学 医科学研究所附属ヒトゲノム解析センター
  type: Organization
  label: The University of Tokyo The Institute of Medical Science Human Genome Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16996316
landing page: http://textlens.hgc.jp/McSyBi/index.html
theme: T0015
theme: T0030
status: Suspended @en
status: 公開停止中

nbdc00562
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MDB

nbdc00562
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MDB

MDB
type: Dataset
alternative: Metalloprotein Database and Browser @en
description: MDBはProteinDatabase(PDB)に存在する構造のうち、金属イオンを含むものに関して定量的な情報を提供しています。金属イオンの種類とその個数、タンパク質立体構造の分解能でも検索することが可能です。また、タンパク質立体構造内の金属イオンとアミノ酸との距離やその個数による検索も可能です。検索方法として、Webで検索したい項目を指定するほか、SQLによる検索も可能です。
language: en
publisher: The Scripps Research Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752342
landing page: http://metallo.scripps.edu
theme: T0022
theme: T0029
theme: T0007
status: 休止
status: Inactive @en

nbdc00563
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-10-02
source: Integbio Database Catalog
primary topic: MDeR （アーカイブ）

nbdc00563
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-10-02
source: Integbio Database Catalog
primary topic: MDeR （アーカイブ）

MDeR （アーカイブ）
type: Dataset
title: MDeR (Archive) @en
alternative: The MetaData Element Repository in life sciences @en
alternative: The metadata element repository in life sciences
description: ライフサイエンス分野のメタデータ要素のレポジトリサイト。国際標準およびライフサイエンス分野のデータベースのメタデータ要素の定義や内容、さらにデータ記述法を収録し、データベース構築時のデータのメタデータの標準化や既存のデータベースのデータ相互の関連付けを支援するサイトです。メタデータレポジトリには、異なる標準のメタデータが登録され、統一的なデータの概念、表現、定義を提供しますので、異なるデータベース間においてデータの共有や交換、相互運用が可能となります。MDeRには、ISO/IEC 11179 Part 3 (Registry metamodel and basic attributes) (ISO/IEC JTC1 SC32ホームページ、2008-03-03参照)に準拠した形でメタデータ要素が収録されています。 オリジナルサイトの運用は終了しました。引き続き生命科学系データベースアーカイブから「MDeR」をご利用いただけます。
description: MDeR is a repository of metadata standards and other metadata elements extracted from databases related to life sciences. Each entry contains following attributes based on the ISO/IEC 11179 Part3 (Registry metamodel and basic attributes); Data Element, Object Class, Property, Value Domain and Others. Users can search metadata elements by keywords, and compare the search results to select up to 10 elements. @en
language: ja
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  label: Japan Science and Technology Agency National Bioscience Database Center @en
  address country: Japan @en
  address country: 日本
landing page: http://dbarchive.biosciencedbc.jp/jp/mder/desc.html
theme: T0019
status: Active @en
status: 稼動中

nbdc00564
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MEDALS

nbdc00564
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: MEDALS

MEDALS
type: Dataset
alternative: METI database portal for life science
description: このポータルサイトでは、これまで経済産業省関連機関により実施されたライフサイエンス分野の研究開発プロジェクトについて、1989年以降の成果物（データベース、ツール等）の情報を整理・提供しています。現在の成果物数: 108 (Database:63, Analysis tool:45)現在のプロジェクト数: 51今後もこれらの成果物が効果的に利用されることを目的に、内容を更新・追加していきます。
description: This site is a portal providing access to a large number of integrated Life Science databases. Its construction and maintenance is made possible by the financial support from the Ministry of Economy, Trade and Industry (METI), JAPAN. An advanced search option is provided. Two manuals and fourteen project reports are available for download. MEDALS (the name of the site) is an anagram for MEti DAtabase portal for Life Science. @en
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所 バイオメディシナル情報研究センター
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://medals.jp/archives/list
landing page: http://medals.jp/
landing page: http://medals.jp/etop
theme: T0031
theme: T0030
status: Active @en
status: 稼動中

nbdc00565
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-10-13
source: Integbio Database Catalog
primary topic: MEDIE

nbdc00565
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-10-13
source: Integbio Database Catalog
primary topic: MEDIE

MEDIE
type: Dataset
description: MEDIE is a tool for data mining published literature. The site provides search prompts and examples for users to obtain experimentally validated connections from the MEDLINE literature database. Users provide simple semantic search terms and MEDIE provides references regarding the search. @en
description: 自然言語処理とテキストマイニング技術をベースとし、MEDLINEアブストラクトから生物医学の関係概念を検出するための知的検索エンジンです。構文解析によって計算された意味構造を用いて、高精度かつ高速に関係概念を検索・抽出します。
language: en
publisher: 東京大学 大学院情報理工学系研究科
  type: Organization
  label: The University of Tokyo The Graduate School of Information Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.nactem.ac.uk/medie/index.cgi
theme: T0019
theme: T0030
status: Active @en
status: 稼動中

nbdc00566
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MEROPS

nbdc00566
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MEROPS

MEROPS
type: Dataset
alternative: the Peptidase Database
description: ぺプチダーゼ（プロテアーゼ、タンパク質分解酵素）とそのインヒビターの情報を収集、整備したデータベースです。約3,000件のぺプチダーゼとインヒビターが登録されており、各エントリーには、名称、ドメイン構造、ファミリーなどの分類、活性、ヒトとマウスの遺伝子情報、三次元構造、生物種ごとの配列、文献、基質など様々な情報が含まれています。MEROPSでは、分子構造を基本としたタンパク質の階層分類を採用しています。各ぺプチダーゼは、アミノ酸配列相同性を基本とするファミリーに分類し、さらに相同性を持つファミリーは、スーパーファミリーclanにグループ化しています。
description: MEROPS is a database of peptidases. The database contains peptidases from multiple species grouped by sequence-similarity families. The database also contains information on proteins known to inhibit peptidases. Users can search by protein or gene name, identifier, organism, substrate, or sequence by BLAST. The database is also available for download. @en
language: en
publisher: Sanger Institute
  type: Organization
  label: The Sanger Institute @en
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17991683
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22086950
distribution: Distribution
  rights: merops.sanger.ac.uk
  access URL: http://merops.sanger.ac.uk/download/
  access URL: http://merops.sanger.ac.uk/download_list.shtml
landing page: http://merops.sanger.ac.uk
theme: T0021
theme: T0028
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00567
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MethDB

nbdc00567
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MethDB

MethDB
type: Dataset
alternative: the database for DNA methylation and environmental epigenetic effects
description: DNAに存在するメチル化シトシンの出現頻度に関するデータベースです。HPLCやシーケンスなど様々な方法で解析されたデータが蓄積されています。このデータベースはメチル化情報を登録するために作成されているため、解析ツールは備わっていませんが、外部に有用なツールがありそれらを活用することができます。たとえば、Ensembl contig viewにMethDBの情報をMappingすることも可能です。
description: MethDB is a database providing a resource to store DNA methylation data and to make these data readily available to the public. It contains information about the occurrence of methylated cytosines in the DNA and as much background information which includes the origin of the sample, phenotype, expression of the related gene, etc.. Analysis tools are not included, but external tools are available and users are invited to develop further software for the analysis of methylation patterns. @en
language: en
publisher: MethDBチーム
  type: Organization
  label: MethDB team @en
  address country: Global
landing page: http://www.methdb.de/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0005
status: Active @en
status: 稼動中

nbdc00568
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MGI

nbdc00568
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MGI

MGI
type: Dataset
alternative: Medaka Genome Initiative
description: MGI is a website of Medaka genome studies. The site has links to various projects, some of which are published papers and some of which can be searched and browsed further to obtain sequence and genome mapping information. @en
description: MGIはメダカに関する研究チームの国際的な枠組みです。メダカゲノムプロジェクトを推進するべく、効率的に研究を進め、遺伝子情報をはじめそのために必要な情報を収集し、開発するためのコミュニティーです。実質、MEPDへのリンクが有用な資源となっており、関連する組織へのリンクを得ることができます。
language: en
publisher: 東京大学 大学院新領域創成科学研究科
  type: Organization
  label: The University of Tokyo Graduate School of Frontier Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15602912
landing page: http://park.itc.u-tokyo.ac.jp/K-medaka/MGI2/MGI.html
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
status: Active @en
status: 稼動中

nbdc00569
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: MIAMI

nbdc00569
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-11-21
source: Integbio Database Catalog
primary topic: MIAMI

MIAMI
type: Dataset
alternative: Microarray-based Integrated Analysis of Methylation by Isoschizomers
description: MIAMI法（マイクロアレイによるゲノムワイドなメチル化解析法）について詳しい実験手法を示すとともに、この手法を用いた解析により、様々な疾患とエピジェネティクスの関係の例をまとめています。
description: MIAMI is a repository for epigenetics, particularly a method of DNA methylation analysis; MIAMI (Microarray-based Integrated Analysis of Methylation by Isoschizomers). The website explains the definition of epigenetics and correlation between epigenetic changes and some diseases, as well as the strategy for MIAMI. This database also provides an example of MIAMI analysis and a protocol for MIAMI. @en
language: ja
language: en
publisher: 群馬大学 生体調節研究所附属生体情報ゲノムリソースセンター
  type: Organization
  label: Gunma University Institute for Molecular and Cellular Regulation Biosignal Genome Resource Center @en
  address country: Japan @en
  address country: 日本
landing page: http://epigenome.dept.showa.gunma-u.ac.jp/~hatada/miami/index.html
theme: T0015
theme: T0024
theme: T0004
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0018
status: Active @en
status: 稼動中

nbdc00570
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MiBASE

nbdc00570
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MiBASE

MiBASE
type: Dataset
alternative: Micro-Tom Database @en
description: MiBASE is a database of sequence and expression information for the tomato cultivar Micro-Tom. The database contains cDNA clone sequences, gene pathway information, gene expression profiles, and Unigene and BLAST search tools for genes and sequences, respectively. The database consists of separate modules for each means of exploring Micro-Tom data. Bulk data is also available for download. @en
description: トマト品種Micro-Tomの果実由来のESTと葉由来のEST(合計125,883EST)を公開しています。公共データベースから得たトマトESTとMicro-Tom ESTと合わせ、アセンブルを行い構築した 76,276個のUNIGENEと機能アノテーション情報、マイクロアレイのデータも公開しています。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15975739
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20350329
distribution: Distribution
  description: DL.html
  access URL: http://www.pgb.kazusa.or.jp/mibase/DL.html
landing page: http://www.pgb.kazusa.or.jp/mibase/
theme: T0021
theme: T0024
theme: T0026
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: T0003
theme: T0017
status: Active @en
status: 稼動中

nbdc00571
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-06-02
source: Integbio Database Catalog
primary topic: miRo2

nbdc00571
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-06-06
source: Integbio Database Catalog
primary topic: miRo2

miRo2
type: Dataset
alternative: The miR-Ontology Knowledgebase @en
description: miRO is a database of microRNA information. The database contains entries for miRNAs, target genes, tissue expression, and other functional information. Users can search or use several miRNA tools inculding reverse translation of proteins to gene sequences and miRNA network targets. @en
description: ヒトにおけるmiRNAの情報を提供するナレッジベースです。miRNA名、ターゲット遺伝子名、機能、関連疾患名等で検索でき、ターゲッティング情報、ターゲット遺伝子に関連する情報、ゲノムの位置情報等を確認することができます。
language: en
publisher: The Ohio State University Wexner Medical Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20157481
landing page: http://microrna.osumc.edu/miro/
theme: T0016
theme: T0015
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00572
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MitoDat

nbdc00572
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MitoDat

MitoDat
type: Dataset
alternative: Mendelian Inheritance and the Mitochondrion
description: ミトコンドリアの生合成や機能に関わっている酵素、骨格系タンパク質やその他機能がいまだ判明していないタンパク質を規定している核遺伝子の情報を集めたものです。遺伝子名や分画で検索が可能です。また、データベースのダウンロードも可能になっています。
language: en
publisher: Center for Cancer Research Nanobiology Program
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8740181
landing page: http://www.ccrnp.ncifcrf.gov/mitoDat/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0013
theme: T0001
status: 休止
status: Inactive @en

nbdc00573
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MolMovDB

nbdc00573
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: MolMovDB

MolMovDB
type: Dataset
alternative: The database of molecular motions
description: MolMovDB is a database of the motions that occur in proteins and other macromolecules, particularly using movies. This database classifies macromolecular motions into a limited number of categories, first on the basis of size (distinguishing between fragment, domain and subunit motions) and then on the basis of packing. Moreover, it contains tools to interpolate between two conformations (the Morph Server) and predict possible motions in a single structure and an interface to a hinge prediction service, which acts on single structures and predicts likely residue points for flexibility. @en
description: PDBファイル間の動きをモーフィングしたデータベースです。その多くはユーザの投稿データによって構成されています。また、解析ツールとして、化学的に2つの構造の補間構造を生成するMorphServerがあり、現在RNA,DNA,複数のサブユニットからなる複合体に対応しています。その他にもヘリックス構造の相互作用の解析などの立体構造解析に有用なツールがあります。
language: en
publisher: Yale University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9722650
landing page: http://molmovdb.mbb.yale.edu/molmovdb/
landing page: http://molmovdb.org/
theme: T0022
theme: T0029
theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00574
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-04-19
source: Integbio Database Catalog
primary topic: Mouse Basement Membrane Bodymap

nbdc00574
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-19
source: Integbio Database Catalog
primary topic: Mouse Basement Membrane Bodymap

Mouse Basement Membrane Bodymap
type: Dataset
description: マウス胎仔における基底膜蛋白質42種（既知の基底膜蛋白質の約90％）の発現部位を免疫組織化学的手法を用いて網羅的に解析し、得られた染色標本のデジタル画像を収録した画像データベースです。各基底膜蛋白質に対する抗体で染色した胎生16.5日のマウス胎仔の全身標本のデジタル画像（高解像度顕微鏡写真より合成された約4GBの画像）210枚が登録されており、タンパク質ごと、組織ごとに閲覧できます。「Google Earth」と同じ感覚で、標本の任意の部位を全身レベルから１個１個の細胞レベルまで任意の倍率で観察できます。
description: The Mouse Basement Membrane Bodymap is a visual database of extracellular protein localization. The database consists of high-resolution images of hundreds of mouse embryos showing the localization of dozens of extracellular matrix and basement membrane proteins. Images were obtained by IHC and users can zoom and display images using the built-in Bodymap applet. @en
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
landing page: http://dbarchive.biosciencedbc.jp/archive/matrixome/bm/home.html
theme: T0024
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
status: Active @en
status: 稼動中

nbdc00575
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Mouse DNA Microarray

nbdc00575
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: Mouse DNA Microarray

Mouse DNA Microarray
type: Dataset
description: The Mouse DNA Microarray database is a resource of gene expression data for C57BL/J6 and 129 mouse strains. The database contains gene expression profiles from brain, liver, and spleen from these two lines that are presented as lists of differentially expressed genes. The stated intention is for use as a background for transgenic mouse experiments to dissect strain-specific expression differences from changes due to transgene expression. @en
description: 129X1/SvJとC57BL/6Jマウスの系統間で、新生児脳、成体脾臓、成体肝臓における遺伝子発現の差をマイクロアレイで調べた結果を掲載しているデータベースです。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15029957
landing page: http://www.kazusa.or.jp/DNA_Microarray/mouse/2003-B6vs129/
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
status: Active @en
status: 稼動中

nbdc00576
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Mouse Genome Databases

nbdc00576
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Mouse Genome Databases

Mouse Genome Databases
type: Dataset
description: Mouse Genome Databases is a resource for genetic and genomic mouse data. The database contains collected data files from several genome mapping projects. The available files include resources from many different mouse strains as well as tools for mapping QTLs. Users can download files in Excel and FileMaker Pro formats. @en
description: 2000-2001年マウス染色体委員会の報告書、1997年のMITマイクロサテライトマップRelease15、遺伝子組み換え近交系マウスデータベース、染色体マップのテキスト情報をもとに、データを提供しています。データはExcel,TEXT,FileMaker形式で提供されており、ダウンロードして利用することが可能です。
language: en
publisher: Neurogenetics at University of Tennessee Health Science Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  access URL: http://www.nervenet.org/main/databases.html
landing page: http://www.nervenet.org/main/dictionary.html
theme: T0014
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0003
theme: T0021
theme: T0030
status: Active @en
status: 稼動中

nbdc00577
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MTB Database

nbdc00577
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MTB Database

MTB Database
type: Dataset
alternative: Mouse Tumor Biology Database
description: MTB Database is a database of tumor biology in mice. The database contains information on experimentally induced and characterized tumors sorted by mouse strain and genetics. Users can search by tumor type and affected tissue. gene expression data sets are avaiable for download. @en
description: 様々な要因で発生したマウスの腫瘍に関する情報を提供しています。腫瘍発生頻度、潜伏期間、系統、臓器などの様々なキーワードで検索することが可能です。病理学データも含まれており、病理組織画像や臓器の腫瘍の様子を映した写真も閲覧することができます。
language: en
publisher: The Jackson Laboratory
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11888882
landing page: http://tumor.informatics.jax.org/mtbwi/index.do
theme: T0015
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
status: Active @en
status: 稼動中

nbdc00578
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: MusBanks

nbdc00578
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: MusBanks

MusBanks
type: Dataset
alternative: A portal to worldwide mutant databases
description: マウスの変異に関して、MEDLINE等の文献と世界のマウス変異データベースから情報を収集したデータベースです。キーワード検索が可能です。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://omicspace.riken.jp/MusBanks/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0030
status: 運用終了
status: Closed @en

nbdc00579
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: MutationView

nbdc00579
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-10-09
source: Integbio Database Catalog
primary topic: MutationView

MutationView
type: Dataset
description: ヒトの疾患の原因遺伝子に関するデータベースです。染色体イディオグラム上での疾患遺伝子の検索と一覧表示、身体・臓器の模式図上での遺伝子/疾患名の検索、表示ができます。例えば目の病気、心臓の病気、脳の病気というように、病気の部位ごとに関与している遺伝子の変異を調べることも出来ますし、総合的に自己免疫病や癌の原因遺伝子について調べることも出来ます。
description: MutationView is a database of mutations known to cause disease. The database contains a browser to inspect mutation loci and allows searches by gene, disease, or protein domain. The database is compiled from OMIM mutation entries. @en
language: en
publisher: 慶應義塾大学 医学部
  type: Organization
  label: Keio University School of Medicine @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592275
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12762231
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125127
landing page: http://mutationview.jp/MutationViewV2Server/top
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00580
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-05
source: Integbio Database Catalog
primary topic: ナショナルバイオリソースプロジェクト「ニホンザル」(National Bioresource Project "Japanese monkeys")

ナショナルバイオリソースプロジェクト「ニホンザル」(National Bioresource Project "Japanese monkeys")
type: Dataset
description: 研究用サルの供給を目的としています。このプロジェクトでは、研究用サルの繁殖・飼育事業、研究用サルの供給事業、供給を通して研究者への実験動物福祉と動物実験の適正化の啓発、ニホンザルに関する種々の基礎的データの蓄積（解剖学、生理学、分子生物学、生化学、獣医学）などを目的としています。
language: ja
publisher: 自然科学研究機構 生理学研究所
  type: Organization
  address country: 日本
distribution: Distribution
  rights: site policy 2.html
  access URL: http://nihonzaru.jp/siryou.html
landing page: http://nihonzaru.jp
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9542
theme: T0017
status: 稼動中

nbdc00581
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-11
source: Integbio Database Catalog
primary topic: National BioResource Project Bacillus subtilis

nbdc00581
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-12
source: Integbio Database Catalog
primary topic: National BioResource Project Bacillus subtilis

National BioResource Project Bacillus subtilis
type: Dataset
description: 枯草菌の遺伝子破壊株の情報、寄託、分譲に関する申し込みを受け付けているサイトです。分譲の受付から発送状況まで進捗を適宜確認できるページも用意されています。
description: National BioResource Project Bacillus subtilis is a database of B. subtilis knockout strains mainly established by the Ogasawara Laboratory at the Nara Institute of Science and Technology (NAIST). This database contains gene disrupted strains, strains with genomic deletion or single region deletion, genome reduced mutants and a wild strain. Users can search available resources by keywords such as strain names and related genes, as well as search B. subtilis genes using BLAST. This database provides lists of strains, the genome viewer and protocols to create mutant strains. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: uponPublication
  access URL: https://shigen.nig.ac.jp/bsub/download
landing page: https://shigen.nig.ac.jp/bsub/
landing page: https://shigen.nig.ac.jp/bsub/locale/change?lang=en
theme: T0014
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
theme: T0017
theme: T0021
status: Active @en
status: 稼動中

nbdc00582
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: NBRP ナショナルバイオリソースプロジェクト情報公開サイト

nbdc00582
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: NBRP ナショナルバイオリソースプロジェクト情報公開サイト

NBRP ナショナルバイオリソースプロジェクト情報公開サイト
type: Dataset
title: NBRP Information Site @en
description: NBRP is a portal site of the National BioResource Project (NBRP), which aims to collect, preserve, and provide bioresources for life sciences research. Bioresources associated with NBRP consist of experimental animals, plants, microbes, cells and DNA materials. This portal site provides introduction pages of individual projects, newsletters (BioResource now!) and information on stock centers maintaining bioresources and corresponding databases. Users can search bioresources from categories of species and materials (strains or DNA clones), as well as by keywords. @en
description: ２８機関のリソースセンターをつなぐメタデータサイトで、ライフサイエンス研究の基礎・基盤となるバイオリソース（動物、植物等）について収集・保存・提供を行うとともに、バイオリソースの質の向上を目指し、保存技術等の開発、ゲノム等解析によるバイオリソースの付加価値向上により時代の要請に応えたバイオリソースの整備を行っています。また、バイオリソースの所在情報等を提供する情報センター機能を強化しています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.nbrp.jp/localeAction.do?lang=ja
landing page: http://www.nbrp.jp/localeAction.do?lang=en
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4513
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33083
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2763
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4564
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33634
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/193537
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13422
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3041
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2870
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2830
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8364
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7215
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9549
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8089
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4480
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4496
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/543769
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/554915
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4930
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/63604
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5738
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/35883
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5878
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1117
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7719
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/93934
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33682
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34305
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33630
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/339961
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5884
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9986
status: 休止
status: Inactive @en

nbdc00583
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-01-18
source: Integbio Database Catalog
primary topic: NBRP Nenkin

nbdc00583
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-18
source: Integbio Database Catalog
primary topic: NBRP Nenkin

NBRP Nenkin
type: Dataset
alternative: National BioResource Project Cellular slime molds
description: 細胞性粘菌は単細胞と多細胞の状態を行き来するユニークな生活環をもち、基礎と応用の両面から注目されているモデル生物です。筑波大学は第3期ナショナルバイオリソースプロジェクトの中核機関として細胞性粘菌の株と遺伝子リソースを整備し、リクエストに応じてそれらを国内外に提供します。
description: National BioResource Project Cellular slime molds is a database of the social amoebae (cellular slime molds, Dictyostelium discoideum) resources collected mainly from Japanese laboratories. Each entry in the strain list contains the strain name, parental strain, associated gene, mutagenesis method, use conditions and request availability. Each entry in the gene list includes the clone name, gene name, remark, use conditions and request availability. Users can search available strains or cDNA clones by keywords from those items. @en
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所 生物遺伝資源情報総合センター
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://nenkin.nbrp.jp
landing page: http://nenkin.nbrp.jp/locale/change?lang=en
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33083
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00584
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NCBI

nbdc00584
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NCBI

NCBI
type: Dataset
alternative: National Center for Biotechnology Information
description: NCBI is a portal site for US biological study data. The site contains links to several NIH research resources, most of which are repositories for submission of data from government-funded and/or published projects. Users can search the entire NCBI collection or perform keyword searches of a specific database from the NCBI search bar. Constituent databases contain a wealth of data for download. @en
description: NCBI（米国立バイオテクノロジー情報センター）は、NIH（米国立衛生研究所）のNLM（米国立医学図書館）の一部門として1988年に設立されたバイオインフォマティクス研究組織です。1989年にBLAST、1990年に検索システムEntrezを開発しました。現在では、NCBI内の各種データベースに対する検索を統一的なインタフェースで行えるようにしています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140104
distribution: Distribution
  rights: policies.shtml
  access URL: http://www.ncbi.nlm.nih.gov/home/download.shtml
landing page: http://www.ncbi.nlm.nih.gov
theme: T0015
theme: T0031
theme: T0001
theme: T0007
theme: T0027
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00585
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Genome - Genome information for rice

nbdc00585
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Genome - Genome information for rice

Genome - Genome information for rice
type: Dataset
description: The Rice Genome page contains information on the full genetic code for Oryza sativa. The database contains sequences from five completed and several other initiated (sequence read- or trace-only) projects. Chromosome browser, BLAST, and other related projects are also available from this genome information page. @en
description: イネゲノムに関する各種情報を集約したサイトです。NCBIの情報はもとより、ゲノムシーケンスを行った各機関へのリンクやBLASTへのツールなどがあります。
language: en
publisher: National Institutes of Health
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20487381
distribution: Distribution
  rights: policies.shtml
  access URL: http://www.ncbi.nlm.nih.gov/genome/10
landing page: http://www.ncbi.nlm.nih.gov/genome?term=txid4530%5Borgn%5D
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0001
status: Active @en
status: 稼動中

nbdc00586
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NCL Mutation and Patient Database

nbdc00586
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NCL Mutation and Patient Database

NCL Mutation and Patient Database
type: Dataset
description: NCP Mutation and Patient Database contains information on mutations which cause neuronal ceroid lipofuscinoses. The database contains information about several genes which are causative of NCL as well as resources such as lists of clinicians, researchers, and meetings regarding NCL. @en
description: 神経セロイドリポフスチン症(NCL; Neuronal Ceroid Lipofuscinosis)に関する遺伝子変異情報を提供しているサイトです。ヒトに限らず、モデル動物に関する情報も掲載されており、公表されていないデータも取り扱われています。命名規則はHuman Genome Variation Societyに従っています。
language: en
publisher: University College London
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
distribution: Distribution
  rights: mutation.shtml
  access URL: http://www.ucl.ac.uk/ncl/mutation.shtml
landing page: http://www.ucl.ac.uk/ncl/mutation.shtml
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9940
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
status: Active @en
status: 稼動中

nbdc00587
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RNA Bibliography - ncRNA.org

nbdc00587
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RNA Bibliography - ncRNA.org

RNA Bibliography - ncRNA.org
type: Dataset
description: 機能性RNAプロジェクト(NEDO、2005年開始)において、バイオインフォマティクスグループで開発されたデータベースやバイオインフォマティクスツールを管理しているポータルサイト「ncRNA.org」の一部です。RNA BibliographyではRNAに関する文献情報を収集しています。キーワード検索により目的の文献の書誌情報やアブストラクトを閲覧することが可能です。
description: RNA Bibliography is a searchable database of over 30,000 articles pertaining to RNA. @en
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.ncrna.org/rna-bibliography
theme: T0006
theme: T0030
status: 休止
status: Inactive @en

nbdc00588
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Project Specific Custom Tracks - ncRNA.org

nbdc00588
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Project Specific Custom Tracks - ncRNA.org

Project Specific Custom Tracks - ncRNA.org
type: Dataset
description: 機能性RNAプロジェクト (NEDO、2005年開始)において、バイオインフォマティクスグループで開発されたデータベースやバイオインフォマティクスツールを管理しているポータルサイト「ncRNA.org」の一部です。miRNAなどの既知RNA配列をヒト、マウス、ラット、ショウジョウバエのゲノムにマップしたトラック、ncRNA予測のトラック、miRNAターゲット予測領域のトラックなどのデータベースです。
description: This is a database of genome browser tracks relevant to RNA. The database consists of a list of RNA tracks that can be accessed by the UCSC genome browser and provides statistics and details for each track in human, mouse, rat, and Drosophila genomes. @en
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18440970
landing page: http://www.ncrna.org/custom-tracks
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00589
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Neal's DNA Mutation Site

nbdc00589
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-18
source: Integbio Database Catalog
primary topic: Neal's DNA Mutation Site

Neal's DNA Mutation Site
type: Dataset
description: 遺伝子導入された微生物lacI遺伝子、ヒトp53遺伝子、ヒトhprt遺伝子、遺伝子導入lacZ遺伝子の変異情報が掲載されており、その解析に使われるツールも使用することができます。
description: Neal's DNA Mutation site is a resource for mutations in a select number of genes. The database contains information on characterized mutations of the human HPRT and p53 genes as well as bacterial lacZ and lacI genes. Software for mutation spectra analysis and a relational database are also available. @en
language: en
publisher: Glaxo Wellcome, Inc.
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399835
distribution: Distribution
  access URL: http://www.ibiblio.org/dnam/f_dnload.htm
landing page: http://www.ibiblio.org/dnam/mainpage.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9989
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0001
status: Active @en
status: 稼動中

nbdc00590
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Neuraminidase Structure DB

nbdc00590
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Neuraminidase Structure DB

Neuraminidase Structure DB
type: Dataset
description: 抗インフルエンザウイルス薬開発において第1の標的タンパク質とされる、ノイラミニダーゼの立体構造予測モデル情報を格納しています。構造予測は、ホモロジーモデリング法に基づく立体構造予測のソフトウエアFAMS（ファムス）を用いました。インフルエンザウイルスの増殖にはウイルス由来のノイラミニダーゼと呼ばれるタンパク質が必須であり、特に全世界での新型インフルエンザの流行の可能性という緊急性から、その情報を全て公開することにしました。ノイラミニダーゼは9種類（N1～N9）の亜型に分類されますが、データベースには全種類含まれており、立体構造モデル数は1603件です。
description: Neuraminidase Structure DB is a database of the predicted three-dimensional structures of neuraminidase which is a target protein for the development of anti-influenza drugs. This database contains information on predicted three-dimensional structures of neuraminidase, which are predicted with homology modeling method of Full Automatic Modeling System (FAM; a system developed by Dr. Umeyama, Senior Visiting Scientist at RIKEN/Professor at Kitasato University). Neuraminidases are classified into 9 subtypes (N1 to N9). The database provides 1603 three-dimensional models of all subtypes of the protein. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16187353
landing page: http://protein.gsc.riken.jp/jp/Research/index_na.html
landing page: http://protein.gsc.riken.jp/Research/index_na.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/11320
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/11520
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00591
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NIJC

nbdc00591
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: NIJC

NIJC
type: Dataset
alternative: Neuroinformatics Japan Center
description: 神経情報基盤センター(Neuroinformatics Japan Center、略称：NIJC)は、OECD国際協力に基づくニューロインフォマティクス日本ノードとして、日本におけるニューロインフォマティクスの情報集積拠点となるべく、国立研究開発法人理化学研究所・脳科学総合研究センター内に設立されました。ニューロインフォマティクスは脳神経科学と情報科学・技術の接点であり、その目的はデータの共有、データ解析ツールの開発、脳の計算論モデルの開発などから成る新しい分野です。センターでは、脳科学に関するデータベースの構築・運用を支援するとともに、データベースやニューロインフォマティクス情報へのポータルサイトを運用し、脳科学研究の情報、ニューロインフォマティクス情報の流通基盤を整備します。また、データベース開発、データベース間連携、情報流通に関する技術開発も行います。
description: NIJC is a repository for neuroinformatics; neuroscience and information science maintained by RIKEN Brain Science Institute (RIKEN BSI). This repository consists of documents and links related to neuroinformatics. Some documents are only available in Japanese. Users can search within the website by keywords, and download document flies. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 和光研究所
  type: Organization
  label: RIKEN(The Institute of Physical and Chemical Research) Wako Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://nijc.brain.riken.jp/index.php?ml_lang=ja
landing page: http://nijc.brain.riken.jp/index.php?ml_lang=en
theme: T0014
theme: T0031
status: Active @en
status: 稼動中

nbdc00592
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-08-27
source: Integbio Database Catalog
primary topic: New Natural Compounds purified in RIKEN (Antibiotics Lab and Chemical Biology Research Group)

nbdc00592
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-08-27
source: Integbio Database Catalog
primary topic: New Natural Compounds purified in RIKEN (Antibiotics Lab and Chemical Biology Research Group)

New Natural Compounds purified in RIKEN (Antibiotics Lab and Chemical Biology Research Group)
type: Dataset
description: 理化学研究所（長田抗生物質研究室、ケミカルバイオロジー研究グループ）で精製された新規天然化合物一覧です。化合物名、生物活性、産生生物、参考文献、化学構造が収録されています。
description: New Natural Compounds purified in RIKEN is a database of new compounds isolated from microorganisms in the Antibiotics Laboratory and Chemical Biology Research Group, RIKEN. Each entry contains a name, chemical formula, producing organism (the scientific name), biological activity, abstract and references of a new compound. Users can search compounds by keywords from those items. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22360440
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22052940
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22595423
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22406264
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22186593
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22506091
landing page: http://www.cbrg.riken.jp/csrs/en/compounds.html
landing page: http://www.cbrg.riken.jp/csrs/ja/compounds.html
theme: T0012
theme: T0023
theme: T0010
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00594
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NEXTDB

nbdc00594
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NEXTDB

NEXTDB
type: Dataset
alternative: The Nematode Expression Pattern DataBase @en
description: 線虫（Caenorhabditis elegans）の発現パターンマップをEST解析およびWISH（組織や個体全体に対する ISH）により構築し、公開しています。他に、発生各期におけるISH画像やcDNAクローンの塩基配列、ホモロジー検索の結果が利用可能です。
description: NEXTDB is a database of nematode expression data. The database contains EST information as well as images from in situ hybridization. Maps of genetic entities, images of hybridizations, sequences, and homology search are available, as is a list of RNAi phenotypes. @en
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11231151
landing page: http://nematode.lab.nig.ac.jp/
theme: T0014
theme: T0024
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: T0002
status: Active @en
status: 稼動中

nbdc00595
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NIG Mouse Genome Database

nbdc00595
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-18
source: Integbio Database Catalog
primary topic: NIG Mouse Genome Database

NIG Mouse Genome Database
type: Dataset
description: MSM/Ms近交系マウスに特化した染色体、遺伝子、BAC Cloneに関する情報を提供しているサイトです。このマウスは日本で樹立された系統で、研究で用いられている亜種に３種類あり、そのうちのMUSという亜種から作成された系統です。
description: This mouse genome database contains a browser that allows users to investigate the mouse genome chromosome by chromosome, and further links to the genes on each chromosome. gene details and BAC mapping tools are also available. Bulk data is available for download. @en
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15574823
distribution: Distribution
  access URL: ftp://molossinus.lab.nig.ac.jp/pub/msmdb/
landing page: http://molossinus.lab.nig.ac.jp/msmdb/index.jsp
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
status: Active @en
status: 稼動中

nbdc00596
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NIG Mouse Phenotype Database

nbdc00596
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: NIG Mouse Phenotype Database

NIG Mouse Phenotype Database
type: Dataset
description: This is a database of mouse phenotypes with phenotype information of mutants from a Mus molossinus cross. Physiological and behavior phenotypes have been evaluated in different crosses and can be browsed and downloaded. @en
description: 染色体提供としてMSM/Ms系統種、宿主系統種としてC57BL/6Jを用いconsomic（遺伝的背景が同一の）系統を作成し、それらの系統からComplex Traitに重きを置いた表現系情報を収集しており、現在も継続して進められています。
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19448335
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15574823
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18256237
landing page: http://molossinus.lab.nig.ac.jp/phenotype/index.html
theme: T0014
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
status: Active @en
status: 稼動中

nbdc00597
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Nocardia farcinica Genome Project Page

nbdc00597
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Nocardia farcinica Genome Project Page

Nocardia farcinica Genome Project Page
type: Dataset
description: 病原性放線菌Nocardia farcinica IFM 10152株の全ゲノム配列（2つのプラスミドを含む）と、アノテーションを掲載しています。リピート配列、薬剤耐性遺伝子、毒性遺伝子、リボソームタンパク遺伝子、リボソームRNA遺伝子、tRNA遺伝子などを閲覧できます。
description: This is the genome database for Nocardia species, which can cause nocardosis in humans. The database contains browsable genome content of several Nocardia strains and related species, a genome browser, and lists of genes in several functional categories. The process of sequencing is also detailed. External links to related resources are provided. @en
language: en
publisher: 厚生労働省 国立感染症研究所
  type: Organization
  label: National Institute of Infectious Diseases @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16569850
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17314425
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19942945
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21097631
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15466710
distribution: Distribution
  access URL: http://nocardia.nih.go.jp/gview/index.html#download
landing page: http://nocardia.nih.go.jp
theme: T0021
theme: T0001
theme: T0007
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/37329
status: Active @en
status: 稼動中

nbdc00598
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Noncoding RNA database

nbdc00598
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: Noncoding RNA database

Noncoding RNA database
type: Dataset
description: 非コードRNAの配列と機能に関する情報を収集したデータベースです。真正細菌、古細菌、真核生物の99生物種について30,000以上の配列が登録されています。配列情報はGenBank、アノテーション情報はFANTOM3（マウス）、H-inviational Integrated Database（ヒト）、ゲノムマッピング情報はUCSCゲノムブラウザを用いています。細菌由来の低分子量細胞質RNA（scRNA）の配列とアノテーションはRfamデータベースを用いています。 microRNA、snoRNAや、rRNA、tRNA、snRNA、SPR RNAのようなハウスキーピングRNAについては収録していませんが、他のデータベースへのリンクがあります。
description: This database is a collection of information associated with the sequence and function of non-coding RNA. There are over 30,000 sequences spanning a total of 99 species from Bacteria, Archaea, and Eukaryota. Sequence information is obtained from GenBank, annotations are obtained from FANTOM3 (mouse) and H-invitational Integrated Database (humans), while the genome mapping information uses the UCSC genome browser. The sequences and annotations of small cytoplasmic RNAs from bacteria is obtained from the Rfam database. This database does not include microRNA, snoRNA, and housekeeping RNAs such as rRNA, tRNA, snRNA, and SPR RNA. @en
language: en
publisher: Poznan University
  type: Organization
  address country: ポーランド
  address country: Poland @en
landing page: http://biobases.ibch.poznan.pl/ncRNA
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00599
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-03-06
source: Integbio Database Catalog
primary topic: NucleaRDB

nbdc00599
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-03-06
source: Integbio Database Catalog
primary topic: NucleaRDB

NucleaRDB
type: Dataset
alternative: information system for Nuclear Receptors @en
description: 核内受容体に関する情報を提供しているサイトです。受容体タンパク質の配列情報、配列アラインメント情報、構造情報として、２次元情報やPDBへのリンク、NRSAS (Nuclear Receptor Structure Analysis Server)へのリンク、その他、変異情報や核内受容体遺伝子の染色体上における位置、受容体結合に関する情報も掲載されています。
description: NucleaRDB is a database of nuclear hormone receptors. The database contains gene and protein sequence, mutation, and ligand binding information. Users can search or browse receptors by family or structure. BLAST search and an alignment builidng tool are also available. @en
language: en
publisher: University of California, San Francisco, Centre for Molecular and Biomolecular Informatics
  type: Organization
  address country: オランダ
  address country: United States @en
  address country: アメリカ合衆国
  address country: Netherlands @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125133
landing page: http://www.receptors.org/nucleardb/
theme: T0021
theme: T0007
status: 休止
status: Inactive @en

nbdc00600
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Nucleotide

nbdc00600
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Nucleotide

Nucleotide
type: Dataset
description: 国際塩基配列データベースであるGenBank、EMBL、DDBJ の配列データを収録しています。NCGR（National Center for Genome Resources）が提供しているゲノム配列データベース（GSDB）の配列データや、米国特許商標庁（USPTO）および他の国々の特許庁の国際的なデータベースで公開されている特許配列も含まれます。
description: Nucleotide is a database of nucleic acid sequences. The database contains sequence entities from a variety of sources covering hundreds of organisms. The major resources GenBank and RefSeq repositories are both available through Nucleotide. Users can submit nucleotide sequences and data is available for download. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/
landing page: http://www.ncbi.nlm.nih.gov/nuccore
theme: T0021
theme: T0001
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00601
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: O-GlycBase

nbdc00601
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: O-GlycBase

O-GlycBase
type: Dataset
alternative: O- and C-glycosylated proteins database
description: O-GlycBase is a database of glycosylated proteins. The database contains over two hundred entries of known O- and C-glycosylated proteins. Users can download redundant or unique files of glycosylated proteins. @en
description: O-linked glycosylationサイトを少なくともひとつ持つことが実験的に確認されている糖タンパク質を公開データベースおよび文献から収集し整理したデータベースです。各エントリには配列の他、グリカンの種類、O-リンクするSer, Thrの位置、N-リンクするAsnの位置、C-リンクするTrpの位置、生物種、文献情報が記述されています。
language: en
publisher: Center for Biological Sequence Analysis
  type: Organization
  address country: Denmark @en
  address country: デンマーク
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847232
distribution: Distribution
  description: readme
  access URL: http://www.cbs.dtu.dk/ftp/Oglyc/
landing page: http://www.cbs.dtu.dk/databases/OGLYCBASE
theme: T0021
theme: T0008
theme: T0007
status: Active @en
status: 稼動中

nbdc00602
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: OLIGAMI

nbdc00602
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: OLIGAMI

OLIGAMI
type: Dataset
alternative: Oligomer Architecture and Molecular Interface @en
description: OLIGAMI is a database of protein structure information emphasizing quaternary structure. The database contains curated structure entries that can be browsed by SCOP hierarchy. Searches are also available by PDB or keyword. Results are visualized in a 3D Jmol applet and coordinates can be downloaded. @en
description: 生体高分子のオリゴマー構造をインタラクティブな分子ビューアと簡便な式の形で見ることができます。Protein Data Bank (PDB)中の全ての立体構造について4次構造のキュレーションを行っており、SCOPの階層構造に従ってまとめられています。
language: en
publisher: 創価大学
  type: Organization
  label: Soka University @en
  address country: Japan @en
  address country: 日本
landing page: http://protein.t.soka.ac.jp/oligami/
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00603
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: OmicBrowse

nbdc00603
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: OmicBrowse

OmicBrowse
type: Dataset
description: ゲノム上に存在する遺伝子などのさまざまなアノテーション情報に関する多数のデータベース群を同時に検索して、その結果を可視化する機能を持ちます。データサーバーとビューアーから構成されており、データサーバーは強力なデータ統合機能と豊富な拡張性を持ち、ビューアーは表示範囲に限界がないという特徴があります。データが多い場合でも統計的な指標を瞬時に計算して表示することができ、そこからキーワードで重要な遺伝子を絞り込むことにより、病気の原因遺伝子を探索するなどの作業が大幅に効率化されます。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15262794
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17077097
landing page: http://omicspace.riken.jp/db/genome.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
status: 運用終了
status: Closed @en

nbdc00605
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: OmicScan (Integrating MEDLINE and Omics Database)

nbdc00605
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: OmicScan (Integrating MEDLINE and Omics Database)

OmicScan (Integrating MEDLINE and Omics Database)
type: Dataset
description: MEDLINE、OMIM、PPI等の文献情報とオントロジーを関連付けたデータベースです。ヒト、マウス、ラット、線虫、シロイヌナズナの生物種のデータがあります。文献、遺伝子、疾患名、代謝名、変異、局在、薬物名等に関してキーワード検索が可能です。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://omicspace.riken.jp/OmicScan/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 運用終了
status: Closed @en

nbdc00606
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: OriDB

nbdc00606
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-04
source: Integbio Database Catalog
primary topic: OriDB

OriDB
type: Dataset
alternative: DNA Replication Origin Database @en
description: OriDB is a database of budding yeast origins of replication. The database contains validated origins and links to studies predicting and confirming the sites. The sites are listed by location, and maps and other site-specific information are available. @en
description: 出芽酵母の複製起点(ori)に関する提供者の情報をまとめて公開しているサイトです。各複製起点の情報確度、染色体上の位置が示されており、キーワード検索も可能です。 現在は運用を終了しています。後継サイトとして、出芽酵母 (Saccharomyces cerevisiae) についての情報をまとめたS. cerevisiae OriDB (http://cerevisiae.oridb.org/) と、パン酵母 (Schizosaccharomyces pombe) についての情報をまとめた S. pombe OriDB (http://pombe.oridb.org/) の2つが公開されています。
language: en
publisher: University of Aberdeen Foresterhill
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17065467
landing page: http://www.oridb.org/index.php
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0021
theme: T0028
theme: T0005
status: 運用終了
status: Closed @en

nbdc00607
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-05-28
source: Integbio Database Catalog
primary topic: PANDIT

nbdc00607
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-05-28
source: Integbio Database Catalog
primary topic: PANDIT

PANDIT
type: Dataset
alternative: Protein and Associated Nucleotide Domains with Inferred Trees
description: PANDIT is a database of protein domain conservation and relationship information. The database contains phylogenic trees of proteins indicating the degree of similarity between domains of evolutionarily related proteins represented in the Pfam database. Raw data for all phylogenies can be downloaded. @en
description: Pfam databaseを基にしたアミノ酸配列、塩基配列のアラインメント情報をまとめたもの、多くのタンパクで共通しているドメインの進化系統樹情報を提供しているサイトです。 2005年9月以降データは更新されていませんが、データのブラウズ、ダウンロードが継続して行えるように運用されています。
language: en
publisher: The European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381879
landing page: http://www.ebi.ac.uk/research/goldman/software/pandit
theme: T0021
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00608
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Pathguide

nbdc00608
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Pathguide

Pathguide
type: Dataset
alternative: Pathway resource list @en
description: 約325件の生体パスウエイ関連データベース、分子相互作用関連データベースのリンクURL、詳細情報、利用方法を整理し、提供しています。各データベースはサブカテゴリー（タンパク質-タンパク質相互作用、代謝パスウエイ、シグナルパスウエイ、パスウエイダイアグラム、転写因子・遺伝子制御ネットワーク、タンパク質-化合物相互作用、遺伝子相互作用ネットワーク、タンパク質配列、その他）に分類されています。
description: Pathguide is a database of biological pathways. The database contains information on hundreds of pathways including metabolic and signaling pathways as well as protein-protein and gene regulatory networks. The website collects information from several other web resources and formats. Users can search by organism, availability, and data standard, and links are provided to the constituent databases. @en
language: en
publisher: Memorial Sloan-Kettering Cancer Center, the University of Toronto
  type: Organization
  address country: カナダ
  address country: United States @en
  address country: アメリカ合衆国
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381921
landing page: http://www.pathguide.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0010
theme: T0026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0001
status: Active @en
status: 稼動中

nbdc00609
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-11-22
source: Integbio Database Catalog
primary topic: 病理コア画像

病理コア画像
type: Dataset
alternative: Pathology Core Pictures
description: 主に医学部学生の自主学習や教員の方の講義の教材として活用してもらうことを目的にしたヒトの病理画像データベースです。日本病理学会教育委員会が中心となって作成されました。２４の臓器等に分類された目次から目的の画像を閲覧することができ、さらに画像を自由にダウンロードすることも可能です (商用利用の際には申請が必要です）。現在は第２版改訂版を公開しています。以前は「病理各論コア画像 (Pathology Core Pictures)」として公開されていました。
language: ja
publisher: 社団法人日本病理学会
  type: Organization
  address country: 日本
landing page: http://pathology.or.jp/corepictures2010/index.html
theme: T0014
theme: T0015
theme: T0029
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 稼動中

nbdc00611
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PAZAR

nbdc00611
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PAZAR

PAZAR
type: Dataset
alternative: A Public Database of Transcription Factor and Regulatory Sequence Annotation
description: PAZAR is a database of regulatory sequence information, including information about transcription factors. The database contains information collected from dozens of published studies of gene regulatory information. Users can search by transcription factor, target gene, or regulatory sequence of interest as well as browse by gene or study. @en
description: 転写因子と転写制御配列のデータベースです。キーワード検索が可能です。またプロジェクトで生産されたデータの投稿が可能です。
language: en
publisher: Centre for Molecular Medicine and Therapeutic
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17916232
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18971253
distribution: Distribution
  description: dataformats.pl
  rights: overview.pl
  access URL: http://www.pazar.info/cgi-bin/downloads.pl
landing page: http://www.pazar.info
theme: T0021
theme: T0001
theme: T0007
status: 休止
status: Inactive @en

nbdc00612
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-25
source: Integbio Database Catalog
primary topic: PDB-REPRDB

nbdc00612
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-25
source: Integbio Database Catalog
primary topic: PDB-REPRDB

PDB-REPRDB
type: Dataset
alternative: Representative protein chains from PDB @en
alternative: 代表タンパク質チェイン決定システム
description: PDB(Protein Data Bank)により提供されるタンパク質チェインを分類して代表タンパク質チェインを決定し、「代表チェインのリスト」と「代表チェインに従属するチェイングループのリスト」を提供するデータベースです。また、SCOP の分類をもとに、coiled coil proteins とpeptides のチェインは分類対象から除くものとします。
description: The site contains the same data as the Protein Data Bank (PDB). The information has however been reorganized to form two lists, one of 1746 membrane protein chains and another containing the full complement (145181) of protein chains, including those on the first list. The links to both these lists were tested and found functional. @en
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520060
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125096
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9322039
landing page: http://mbs.cbrc.jp/pdbreprdb-cgi/reprdb_menu.pl
landing page: http://mbs.cbrc.jp/pdbreprdb-cgi/reprdb_menuJ.pl
theme: T0028
theme: T0007
status: 運用終了
status: Closed @en

nbdc00613
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PDBe

nbdc00613
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PDBe

PDBe
type: Dataset
alternative: Protein Data Bank Europe @en
description: PDBe is a database of protein structures. The database is the European resource for the Protein Databank and contains molecular structure coordinates and visualizations of thousands of proteins. Users can search for entries, browse by several curated categories, submit structures, and download coordinate data. @en
description: 欧州蛋白質構造データバンク（PDBe: Protein Data Bank Europe)は、米国の構造バイオインフォマティクス研究共同体(RCSB)、生物学的磁気共鳴データバンク(BMRB)、および日本蛋白質構造データバンク（PDBj)はと協力し、蛋白質・核酸・糖などの生体高分子の立体構造データベースを国際的なPDBアーカイブとして運営しています。また、派生する様々なデータベースやそれらの解析ツールも提供しています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
distribution: Distribution
  rights: access
  access URL: http://www.ebi.ac.uk/pdbe/services/ftp-access
landing page: http://www.ebi.ac.uk/pdbe/
theme: T0022
theme: T0029
theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00614
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PDDB

nbdc00614
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PDDB

PDDB
type: Dataset
alternative: Prion Disease Database
description: PDDB is a database of prion disease research. The database contains a variety of information pertaining to understanding prion diseases, from histological images of prion disease-affected brains to gene expresion and networks. gene expression data are available for download. @en
description: プリオン病研究に特化したデータを扱っているデータベースです。このサイトではプリオン病研究を行っている研究者に、解析、データの投稿、共有を他の研究者と行うことができるようにすることを目的にしています。
language: en
publisher: Institute for Systems Biology, University of Cambridge
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20157484
distribution: Distribution
  description: readme.txt
  rights: Copyright
  access URL: http://prion.systemsbiology.net/downloads/
landing page: http://prion.systemsbiology.net/cgi-bin/dispatcher.cgi/Welcome/display
theme: T0021
theme: T0015
theme: T0024
theme: T0029
theme: T0001
theme: T0002
status: 休止
status: Inactive @en

nbdc00615
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PEDB

nbdc00615
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: PEDB

PEDB
type: Dataset
alternative: Mammalian Promoter/Enhancer Database
description: 保存されているnon-coding領域転写開始領域、転写因子結合領域の情報を統合した、哺乳類のプロモーター/エンハンサーデータベースを提供しているサイトです。Gene SymbolやRefSeqID、Functionなどのキーワードで検索することが可能で、動物種はヒト、マウス、ラットです。
description: PEDB is a database of mammalian promoters and enhancers. The database contains information regarding the sequence and location of transcriptional regulatory elements as determined by conservation and other computational analysis in humans, mice, and rats. Users can search for genes or gene functions. @en
language: en
publisher: 国立研究開発法人理化学研究所 神戸研究所
  type: Organization
  label: RIKEN(The Institute of Physical and Chemical Research) Kobe Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18815372
landing page: http://promoter.cdb.riken.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0021
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00616
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PEDB

nbdc00616
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PEDB

PEDB
type: Dataset
alternative: Prostate Expression Database @en
description: 前立腺での遺伝子発現に関するデータを集めたデータベースです。EST配列、cDNAライブラリに関する情報、マイクロアレイデータ等を提供しています。
description: PEDB is a database of gene expression and related information specific to prostate cells. The database contains several prostate tissue data sets in both humans and mice. Users can search by gene, experiment, or BLAST search and explore expression with several other tools. @en
language: en
publisher: Fred Hutchinson Cancer Research Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752298
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592228
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847181
landing page: http://www.pedb.org
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00617
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Peptidome - NCBI

nbdc00617
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: Peptidome - NCBI

Peptidome - NCBI
type: Dataset
description: タンデム型質量分析器測定で得られたペプチドやタンパク質同定データを蓄積している公共データベースです。イオン化方法や同定エンジン、修飾情報等、同定時のパラメータや生データを取得することができ、それらのキーワードを用いて実験の検索も可能です。なお現在はサイト運用を終了しており、過去のデータはftpサイト (ftp://ftp.ncbi.nih.gov/pub/peptidome/ )から取得可能です。
language: en
publisher: National Institutes of Health
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19942688
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/pub/peptidome/
landing page: http://www.ncbi.nlm.nih.gov/peptidome
theme: T0007
status: 運用終了
status: Closed @en

nbdc00618
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: Petri Net Pathways

nbdc00618
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-20
source: Integbio Database Catalog
primary topic: Petri Net Pathways

Petri Net Pathways
type: Dataset
description: Petri Net Pathways is a database containing models of animated biological pathways. They are also explained in detail. The pathways available are EGFR, GPCR, PIP, Ca-signaling, MAPK, transcriptional reactions, GTPase, PKA and endocytosis. The pathways are accessible from the main body of the homepage and they can be downloaded from there. @en
description: ビジュアルな例を通して、ペトリネットによる生命パスウェイの構築方法を理解することができます。現在はシグナル伝達経路だけですが、代謝経路、遺伝子ネットワークなど追加される予定です。
language: en
publisher: 山口大学 理学部
  type: Organization
  label: Yamaguchi University Faculty of Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21685573
distribution: Distribution
  access URL: http://genome.ib.sci.yamaguchi-u.ac.jp/rails/path_pathways
landing page: http://genome.ib.sci.yamaguchi-u.ac.jp/pnp/
theme: T0026
theme: T0007
status: Active @en
status: 稼動中

nbdc00619
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PFDB

nbdc00619
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: PFDB

PFDB
type: Dataset
alternative: Pathogenic Fungi Database @en
alternative: Pathogenic Fungi Database (病原真菌データベース)
description: PFDB is a database of research and educational resources related to pathogenic fungi. This database contains lists of pathogenic fungi (yeasts and molds), mycoses and media. Users need a password to read detailed disease pages. @en
description: 病原真菌データベース(PFDB)は、病原真菌の研究と教育のために利用できる画像とデータを公開しています。データベースの内容は、起因菌別あるいは疾患別に整理した病原真菌、および病理、臨床画像をメインに構成しました。
language: ja
language: en
publisher: 帝京大学 医真菌研究センター
  type: Organization
  label: Teikyo University Institute of Medical Mycology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.pfdb.net/myhtml/database_jpn.html
landing page: http://www.pfdb.net/myhtml/database_eng.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0015
theme: T0029
status: 休止
status: Inactive @en

nbdc00620
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PicSNP

nbdc00620
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PicSNP

PicSNP
type: Dataset
alternative: A Catalog of Non-Synonymous SNP
description: ヒトの非同義置換（アミノ酸置換をともなう）SNP (Non-synonymous SNP; nsSNP)を収集したデータベースです。nsSNPは遺伝子の機能に従って分類し、タンパク質機能の階層分類リストガイダンスによる検索を可能にしました。また、既知のタンパク質の活性部位およびドメインにおいてアミノ酸変化を引き起こすnsSNPに注目しました。
description: PicSNP is a database of single nucleotide mutations in the human genome that collects non-synonymous mutations from draft versions of the genome on GenBank. Users can locate SNPs by gene or by annotation. @en
language: en
publisher: 大学病院医療情報ネットワーク
  type: Organization
  label: University hospital Medical Information Network @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11549289
distribution: Distribution
  access URL: http://plaza.umin.ac.jp/~hchang/picsnp/
landing page: http://plaza.umin.ac.jp/~hchang/picsnp/
theme: T0021
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: 休止
status: Inactive @en

nbdc00621
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PigGIS

nbdc00621
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: PigGIS

PigGIS
type: Dataset
alternative: Pig Genomics Informatics System @en
description: PigGIS is a database of the pig genome that allows users to browse and search the genome, providing several browsing options as well as search functions, including BLAST. Data are also available for download. @en
description: 配列の判明している領域における豚の遺伝子アノテーションを正確に提供しているサイトです。Sino-Danish Pig Genome Projectで得られたWGSデータ、ESTデータGenbankのデータを統合しています。配列データだけでなく、SNPデータも公開しており、さらに欠損変異を解析する「SIFT」も近日公開予定です。
language: en
publisher: Beijing Genomics Institute
  type: Organization
  address country: 中国
  address country: China @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17090590
distribution: Distribution
  access URL: http://pig.genomics.org.cn/download.jsp
landing page: http://pig.genomics.org.cn/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0001
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00622
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PiSITE

nbdc00622
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PiSITE

PiSITE
type: Dataset
alternative: Database of Protein interaction SITEs @en
description: PiSITE is a database of protein interaction domain information containing protein structures annotated with known and predicted protein interaction sites, determined by interaction sites in PDB structures. In addition to interaction sites, users can also obtain interaction information on interaction partners. Java is required to view structures. @en
description: タンパク質立体構造データベースPDBを利用して、タンパク質複合体の相互作用部位を網羅的に集めたデータベースです。相互作用部位を集める際に、異なる複数のタンパク質と相互作用出来るタンパク質の相互作用部位を同時に考慮している点が特徴です。また副産物として、多くの異なるタンパク質と一時的な相互作用することが出来るSociable proteinのリストも提供しています。
language: en
publisher: 東京大学 医科学研究所
  type: Organization
  label: The University of Tokyo The Institute of Medical Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18836195
distribution: Distribution
  description: download.html
  access URL: http://pisite.hgc.jp/download.html
landing page: http://pisite.hgc.jp/
theme: T0022
theme: T0026
theme: T0007
status: Active @en
status: 稼動中

nbdc00623
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-25
source: Integbio Database Catalog
primary topic: Plant Repeat Databases

nbdc00623
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: Plant Repeat Databases

Plant Repeat Databases
type: Dataset
description: Plant Repeat Databases is a collection of DNA sequence repeats found in plants. The database consists of annotated repeat sequences determined by sequence analysis of completed plant genome projects. Repeats are separated into classes and given a unique code. Users can search sequences or download repeat subsets. @en
description: 12種類の植物の反復配列データベースを提供しているサイトです。各配列に含まれている反復配列は配列や構造の類似性を基にsuper-class, class, subclassに分類されています。主に塩基配列をBLASTにかけることで検索することができます。
language: en
publisher: Michigan State University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681434
distribution: Distribution
  description: composition.html
  access URL: http://plantrepeats.plantbiology.msu.edu/downloads.html
landing page: http://plantrepeats.plantbiology.msu.edu/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0023
theme: T0005
status: 運用終了
status: Closed @en

nbdc00624
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PolymiRTS

nbdc00624
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PolymiRTS

PolymiRTS
type: Dataset
alternative: Polymorphism in microRNA Target Site @en
description: PolymiRTS is a database of DNA variations which occur naturally in predicted and experimentally identified microRNA (miRNA) target sites. It provides links between SNPs in miRNA target sites, cis-acting expression quantitative trait loci (eQTLs), and the results of genome-wide association studies (GWAS) of human diseases. Data are created by scanning 3'UTRs of mRNAs in human and mouse for SNPs in miRNA target sites, and identifying the potential downstream effects of these polymorphisms on gene expression and complex traits. This database also includes polymorphisms in target sites that have been supported by a variety of experimental methods and polymorphisms in miRNA seed regions. @en
description: microRNA(miRNA)のTargetSiteのDNA自然変異に関する情報を集めているデータベースです。miRNA Target siteの変異により、遺伝子発現に影響を及ぼすことがあります。SNPID,miRID,GeneID,GeneSymbol, Gene Description, Phenotypeなどで検索することができ、入力例も用意されています。GeneIDにいくつのmiRNAが関与していて、miRNA Target siteの変異がいくつ報告されているかという一覧も見ることができます。
language: en
publisher: The University of Tennessee Health Science Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17099235
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22080514
landing page: http://compbio.uthsc.edu/miRSNP/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00625
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: Poplar Full-Length Clone Database Search

nbdc00625
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Poplar Full-Length Clone Database Search

Poplar Full-Length Clone Database Search
type: Dataset
description: This is a database of Poplar cDNA clones with 5' and 3' sequence information for each clone. Users can search by gene or clone information, or locate clones by BLAST search. @en
description: 森林総合研究所から寄託を受けたポプラ完全長cDNAクローンのキーワード検索が可能です。キーワードには、リソース番号、NCBI Accession Number、clone nameを指定することが可能です。
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18053163
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15653793
landing page: http://www.brc.riken.jp/lab/epd/catalog/poplarclone.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3689
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00626
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Popset

nbdc00626
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Popset

Popset
type: Dataset
description: ある集団の進化的関係を解析するために集められたDNA配列のセットを収録しています。集団は同一生物種の個体で構成されている場合と、異なる種の個体で構成されている場合があります。各エントリーの配列セットでアライメントすることもできます。
description: Popset is a database of collected sequences which have been used to determine phylogenetic relation amongst individuals in a sample. Data sets can include individuals of any relation, from the same species to millions of years of evolutionary separation. Users can submit datasets and download via FTP. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nlm.nih.gov/genbank/
landing page: http://www.ncbi.nlm.nih.gov/popset
theme: T0001
theme: T0027
status: Active @en
status: 稼動中

nbdc00627
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Porphyra yezoensis (susabinori) EST dataset

nbdc00627
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: Porphyra yezoensis (susabinori) EST dataset

Porphyra yezoensis (susabinori) EST dataset
type: Dataset
description: This is a database of Porphyra yezoensis expressed sequences containing consensus gene sequences and EST reads that allows for BLAST and keyword search. Data are available for download. @en
description: かずさDNA研究所で決定したスサビノリのEST配列と、非冗長タンパク配列データベースとの間で行ったblastx検索の結果が収録されています。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22013916
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10907854
distribution: Distribution
  description: index.html
  access URL: http://est.kazusa.or.jp/en/plant/porphyra/EST/index.html
landing page: http://est.kazusa.or.jp/en/plant/porphyra/EST/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2788
theme: T0007
theme: T0002
status: Active @en
status: 稼動中

nbdc00628
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PosMed

nbdc00628
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: PosMed

PosMed
type: Dataset
alternative: Positional MEDLINE
description: 任意のキーワードから、対応する遺伝子、染色体領域、生体内相互作用を検索・推論し、そのオリジナル論文とともに出力します。まず、最初に指定キーワードをMEDLINEなどの文献データベースから全文検索し、次にヒットしたドキュメントに有意に現れる遺伝子・シンボルを取り出し、統計的に検定してランク付けします。さらに、OmicsSpace中の生体内相互作用の情報を参照してキー遺伝子に関連する遺伝子を探索し、それに対応する情報（オリジナル論文を含む）も出力します。詳細情報の表示にはOmicBrowseを使用します。
description: PosMed is a database connecting data of several types, with information about associations between genes, metabolites, diseases, and other biological categories. Users can search for any category type to explore connections. Data is collected from literature and web resources and semantically connected. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19468046
landing page: http://omicspace.riken.jp/PosMed/
theme: T0001
theme: T0030
status: 休止
status: Inactive @en

nbdc00629
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PPI view

nbdc00629
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: PPI view

PPI view
type: Dataset
alternative: Protein-Protein Interaction viewer @en
description: PPI viewは、ヒトのタンパク質間相互作用情報の表示を行います。H-Invitationalプロジェクトで構築されたヒトの転写物データから予測されるタンパク質について、タンパク質間相互作用情報の割り当てを行いました。
description: This website shows how different human proteins interact with one another. Information on 32,198 human protein interactions is available. A search function, where keywords, H-InvDB IDs, or accession numbers of the researched proteins need to be entered, is provided. @en
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://www.h-invitational.jp/hinv/ppi/index.html
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00630
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PRIDE

nbdc00630
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: PRIDE

PRIDE
type: Dataset
alternative: PSC-RIKEN Database of EST/Gene Expression @en
description: ヒャクニチソウ(Zinnia elegans)の遺伝子発現をESTおよびマイクロアレイで解析した結果が掲載されています。ESTは各配列によるBLASTX検索結果が併記されています。また、マイクロアレイ解析結果はGeNetシステム経由でのみアクセス可能です。
description: This database contains information on the way genes are expressed in plants like Zinnia elegans and also its EST's. This information was collected by applying a tool called Silicon genetics (genet). It is planned to add the same data for other organisms, for instance Arabidopsis, Lotus japonica and BY-2 in the future. A Blast search option is provided. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://mrg.psc.riken.go.jp/PRIDE/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34245
theme: T0024
theme: T0002
status: 休止
status: Inactive @en

nbdc00631
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-04-24
source: Integbio Database Catalog
primary topic: PRIGEN

nbdc00631
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: PRIGEN

PRIGEN
type: Dataset
alternative: PRImate GENes
description: PRIGEN is a database of chimpanzee cDNA sequences. The database contains sequences from several tissues annotated by comparison to human transcripts. Users can search by keyword or BLAST, and bulk download is available. @en
description: チンパンジーの脳や皮膚、上皮組織を材料に作成した全長cDNAライブラリーについて5' ESTを決定、その一部の全長配列を解読しデータベース化しています。現在、14,004の5'EST配列を格納しています。
language: en
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  label: National Institutes of Biomedical Innovation, Health and Nutrition @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12727913
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15677748
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17574350
landing page: http://www.prigen.org
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: T0002
status: Active @en
status: 稼動中

nbdc00632
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PRIMe

nbdc00632
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-01-25
source: Integbio Database Catalog
primary topic: PRIMe

PRIMe
type: Dataset
alternative: Platform for RIKEN Metabolomics
description: メタボロームやトランスクリプトームを研究するためのプラットフォームを提供するポータルサイトです。クロマトグラフィー／マススペクトロメトリーの様々なタイプに対応するツール、マススペクトロメトリーにより得られたデータセット、メタボロミクスシステムの予測、モデリング、解析に用いるウェブベースのプラットフォーム、シロイヌナズナ変異体の代謝機能同定結果など、多くのツールやデータが収録されています。 PRIMeLink（http://spectra.psc.riken.jp/menta.cgi/primelink/index ）を利用するとPRIMe内の横断的な検索が可能です。
description: PRIMe is a database of metabolomics and transcriptomics with several tools for metabolomic research, primarily centered around MS measurements. Metabolic profiles are also correlated with gene expression profiles, and data is available for download. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19032166
references: http://rdf.ncbi.nlm.nih.gov/pubmed/23292601
distribution: Distribution
  rights: http://prime.psc.riken.jp/?action=general_termsOfUse
  access URL: http://prime.psc.riken.jp/archives/
landing page: http://prime.psc.riken.jp/
theme: T0031
theme: T0010
status: Active @en
status: 稼動中

nbdc00633
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PRIMe - SpinAssign

nbdc00633
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: PRIMe - SpinAssign

PRIMe - SpinAssign
type: Dataset
alternative: Platform for RIKEN Metabolomics - SpinAssign
description: メタボロミクスにおいて2次元NMRは新しいアプローチです。そのため、スペクトルの測定から物質を帰属する流れは確立されていません。SpinAssignでは、標準化合物の2次元NMRスペクトルデータベースに対し、ピーク値によって検索する手法を開発し、ウェブアプリケーションとして提供しています。
description: SpinAssign is a tool for annotating 2D 13C-HSQC NMR peaks. The site allows users to input peaks that are then interpreted and identified to their originating metabolite. The annotations are based on previous standardized spectroscopic measurements. Users can specify tolerances for the identification algorithm. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20121204
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15356336
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19030231
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19032166
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17035691
distribution: Distribution
  rights: http://prime.psc.riken.jp/?action=general_termsOfUse
  access URL: http://prime.psc.riken.jp/archives/
landing page: http://prime.psc.riken.jp/?action=nmr_search
theme: T0010
theme: T0018
status: Active @en
status: 稼動中

nbdc00634
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-01-25
source: Integbio Database Catalog
primary topic: PRIMe - Standard Spectrum Search

nbdc00634
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-01-25
source: Integbio Database Catalog
primary topic: PRIMe - Standard Spectrum Search

PRIMe - Standard Spectrum Search
type: Dataset
alternative: Platform for RIKEN Metabolomics - Standard Spectrum Search
description: Standard Spectrum Search is a database of metabolite NMR spectra. The database consists of dozens of spectra and is designed to aid users in metabolomic experiments. Users can search for compound name, KEGG ID, PubChem ID, or formula, and retrieve spectral peaks under various conditions. @en
description: PRIMeプロジェクトで分析された標準化合物を検索するウェブアプリケーションです。Standard Spectrum Searchでは、PRIMeプロジェクトで測定されている標準化合物を化合物名またはPubChem CompoundID、KEGG ID、組成式で検索することができます。スペクトルデータは、質量分析の場合はMassBank.jp上で、NMR分析の場合はPRIMe上で閲覧することができます。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19032166
distribution: Distribution
  rights: http://prime.psc.riken.jp/?action=general_termsOfUse
  access URL: http://prime.psc.riken.jp/archives/
landing page: http://prime.psc.riken.jp/menta.cgi/prime/standard_index
theme: T0010
status: Active @en
status: 稼動中

nbdc00635
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PROPHECY

nbdc00635
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PROPHECY

PROPHECY
type: Dataset
alternative: PROfiling of PHEnotypic Characteristics in Yeast @en
description: 遺伝子欠損出芽酵母のコレクションの表現系について定量的な情報を提供しているサイトです。成長速度、成長効率、適応時間（成長を始めるまでの時間）を用いて表現系を定量化しています。
description: PROPHECY is a database of mutant yeast phenotypes. The database contains information on the growth rate of hundreds of mutants including several different growth metrics in multiple environmental conditions. Users can query by experiment or perform searches for genes of interest. @en
language: en
publisher: Goteborgs universitet
  type: Organization
  address country: スウェーデン
  address country: Sweden @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17148481
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12489126
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14676322
landing page: http://prophecy.lundberg.gu.se
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0016
theme: T0001
status: Active @en
status: 稼動中

nbdc00636
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Protein

nbdc00636
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Protein

Protein
type: Dataset
description: Protein is a database of amino acid sequnces. The database contains experimentally determined sequences as well as computational translations from annotated expressed sequences. Records are collected from several major databases including SwissProt and PDB. Users can submit protein sequences and download via FTP. @en
description: GenBank、EMBL、DDBJの核酸配列から翻訳したコード領域のアミノ酸配列と、PIR（Protein Information Resource）、SWISS-PROT、PRF (Protein Research Foundation)、PDB (Protein Data Bank) に登録されているタンパク質配列（既知配列）を収録しています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  rights: policies.shtml
  access URL: http://www.ncbi.nlm.nih.gov
landing page: http://www.ncbi.nlm.nih.gov/protein
theme: T0021
theme: T0007
status: Active @en
status: 稼動中

nbdc00637
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Protein Cluster

nbdc00637
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Protein Cluster

Protein Cluster
type: Dataset
description: Protein Clusters is a database of related protein families. The database contains clustered protein families across all kingdoms of life, grouped by sequence and structural similarity. Clusters are determined by BLAST similarity of protein sequences in the Refseq genome database. Users can download via FTP. @en
description: アミノ酸配列の類似度やタンパク質の機能でグルーピングされたRefSeqタンパク(Cluster)を検索するサイトです。BLASTで得られたScoreを基に自動的にグルーピングされ、後に機能詳細などの情報が手動で付与されます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18940865
distribution: Distribution
  description: ReadMe.txt
  rights: disclaimer.html
  access URL: ftp://ftp.ncbi.nih.gov/genomes/CLUSTERS/
landing page: http://www.ncbi.nlm.nih.gov/proteinclusters
theme: T0021
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00638
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Pseudomonas Genome Database V2

nbdc00638
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Pseudomonas Genome Database V2

Pseudomonas Genome Database V2
type: Dataset
description: Pseudomonas Genome Database is a resource for the completed genome projects of several Pseudomonas species. The database contains the complete genome sequence of dozens of strains. Users can search or use comparative tools, and sequences are available for download. @en
description: シュードモナスゲノムに関するデータを集めているデータベースで、緑膿菌の一種、PAO1株のゲノムに対するアノテーションが付与されています。それ以外にもシュードモナス属の各種株の情報を閲覧することができます。ゲノムで確認されているCDS,ncRN, rRNAなどのかず、全ゲノムのタンパク質の細胞内位置なども閲覧することができます。
language: en
publisher: Simon Fraser University
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608211
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20929876
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18978025
distribution: Distribution
  rights: acknowledgements
  access URL: http://www.pseudomonas.com/strain/download
landing page: http://www.pseudomonas.com
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/286
theme: T0024
theme: T0026
theme: T0001
theme: T0007
theme: T0027
theme: T0005
theme: T0006
theme: T0003
status: Active @en
status: 稼動中

nbdc00639
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-28
source: Integbio Database Catalog
primary topic: PTM-Switchboard

nbdc00639
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PTM-Switchboard

PTM-Switchboard
type: Dataset
description: PTM-Switchboard is a database of known cases of TF-PTMs affecting gene transcriptions. This database contains triplets of genes as a primary data type about the model organism S. cerevisiae (budding yeast). PTM-Switchboard stores triplets of genes as a primary data type such that the ability of one gene (the TF) to regulate a target gene is dependent on a third gene (the modifying enzyme). Currently, this database is populated with experimentally characterized examples of the Modifier-Transcription Factor-gene (MFG) triplets manually curated from the literature. Furthermore, it provides a framework for searching and analyzing the data, and also serve to benchmark computational methods for identifying novel MFG triplets. The entire 'Gold Set' of fully characterized and experimentally validated MFG triplets is available for download in a simple tab-delimited text format. @en
description: 通常のパスウェイデータベースと異なり、出芽酵母の3つの遺伝子の情報を１つのかたまり(MFG triplet)としてみなして文献から情報を収集してデータベースを構築しています。文献からの情報はどのレベルで確かめられているかの情報も持ち合わせています。また新しいMFG Tripletを特定する方法を計測する機能も提供しています。
language: en
publisher: University of Pennsylvania
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18927104
landing page: http://cagr.pcbi.upenn.edu/PTMswitchboard
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0026
theme: T0001
theme: T0007
status: 休止
status: Inactive @en

nbdc00640
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PubChem BioAssay

nbdc00640
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PubChem BioAssay

PubChem BioAssay
type: Dataset
description: PubChem BioAssay is a database of the biological activity characteristics of various PubChem substances. The database contains readouts and descriptions of experiments analyzing a number of compounds. Users can submit results and download via FTP. @en
description: 化合物を用いた実験結果を参照できるサービスです。どの様な目的で行った実験か、どの様なデータを取得したか、用いた複数の化合物データがPubChemIDと結びついて閲覧することができます。使用した化合物数とともに、活性・不活性となった数も閲覧することができます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140110
distribution: Distribution
  description: README
  rights: README
  access URL: ftp://ftp.ncbi.nlm.nih.gov/pubchem/Bioassay/
landing page: http://www.ncbi.nlm.nih.gov/pcassay
theme: T0010
theme: T0029
theme: T0018
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00641
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PubChem Compound

nbdc00641
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PubChem Compound

PubChem Compound
type: Dataset
description: PubChem Compound is a database of chemical structrues of validated small molecules. The dataase contains entries for PubChem entities which are grouped by structural identity and similarity. Users can submit compounds and download via FTP. @en
description: 化合物名や分子量、CompoundIDなどで化合物の情報を検索することができるサイトです。医薬品名やその効能、LogP値などの物性値も掲載されています。また、類似構造を持つ別の化合物の検索も可能です。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140110
distribution: Distribution
  description: README
  rights: README
  access URL: ftp://ftp.ncbi.nlm.nih.gov/pubchem/Compound/
landing page: http://www.ncbi.nlm.nih.gov/pccompound
theme: T0023
theme: T0010
theme: T0029
theme: T0011
status: Active @en
status: 稼動中

nbdc00642
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PubChem Substance

nbdc00642
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PubChem Substance

PubChem Substance
type: Dataset
description: 薬物名や分子量、SubstanceIDやCompoundIDなどで薬物の情報を検索することができるサイトです。医薬品名やその効能、LogP値などの物性値も掲載されています。また、類似構造を持つ別の化合物の検索も可能です。
description: PubChem Substance is a database of samples of chemical entities which links to the biological activity of those samples in PubChem BioAssay. The database contains structural information on substances with links to further information in cases where the substance has been more fully characterized. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140110
distribution: Distribution
  description: README
  rights: README
  access URL: ftp://ftp.ncbi.nlm.nih.gov/pubchem/Substance/
landing page: http://www.ncbi.nlm.nih.gov/pcsubstance
theme: T0012
theme: T0023
theme: T0010
theme: T0029
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00643
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-02
source: Integbio Database Catalog
primary topic: Radiation Gene

nbdc00643
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-07-03
source: Integbio Database Catalog
primary topic: Radiation Gene

Radiation Gene
type: Dataset
alternative: Database of genes transcriptionally modulated by ionizing radiation in mammalian cells @en
description: 哺乳類の細胞を用いて電離放射線による転写の影響を測定したマイクロアレイデータを公共リポジトリや文献から収集し、データベース化しています。遺伝子名や放射線の種類、時間や量、生物種、細胞の種類などの条件で絞り込んだデータについてヒートマップ表示やクラスター解析ができます。
description: Radiation genes is a database of genes whose transcription varies in response to ionizing radiation. The database contains gene expression microarray data from published papers wherein mammalian cells are exposed to radiation. Users can submit or search data by gene, organism, cell type, and several experimental parameters. @en
language: en
publisher: Consorzio interuniversitario per le Applicazioni di Supercalcolo Per Universita e Ricerca / CASPUR
  type: Organization
  address country: イタリア
  address country: Italy @en
landing page: http://bbcd.bio.uniroma1.it/radiationgenes/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0024
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 休止
status: Inactive @en

nbdc00644
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RAPID

nbdc00644
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RAPID

RAPID
type: Dataset
alternative: RIKEN Arabidopsis Phenome Information Database
description: RAPID is a database of Arabidopsis phenotypes resulting from transposition events. Users can search the database for phenotypes of interest, including images of mutant plants. @en
description: 理研植物科学研究センターで作製したシロイヌナズナトランスポゾンタグラインのデータベースです。Line Codeをキーにした検索と、表現型を選択することによる検索が可能です。Line Codeの一覧も表示できます。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16813574
landing page: http://rarge.psc.riken.jp/phenome/
theme: T0016
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0029
theme: T0001
status: Active @en
status: 稼動中

nbdc00645
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: RAPID

nbdc00645
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RAPID

RAPID
type: Dataset
alternative: Resource of Asian Primary Immunodeficiency Diseases @en
description: アジアの原発性免疫不全症の問題の解決を目指した情報基盤リソースです。アジアでの研究者、臨床家と連携し、情報や技術を共有し、より有効な診断治療の確立を目指しています。インドのバイオインフォマティクス研究所と共同で構築し、公開しています。DNA配列、アミノ酸配列、タンパク質間相互作用、遺伝子発現情報など様々な情報を提供しています。
description: RAPID is a database of mutations leading to immunodeficiency diseases. It has gene and protein information on causative mutations and associated information about gene expression, protein structure, and phenotypes relating to IDs. Tools are also available to predict how mutations affect protein structures, and to explore potentially causative mutations. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18842635
landing page: http://web16.kazusa.or.jp/rapid/
theme: T0021
theme: T0015
theme: T0024
theme: T0026
theme: T0001
theme: T0007
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00646
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RARTF

nbdc00646
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RARTF

RARTF
type: Dataset
alternative: RIKEN Arabidopsis Transcription Factor database
description: PSI-BLAST検索により検出されたシロイヌナズナの全転写因子1,978件と転写因子ファミリーの情報を扱うデータベースです。完全長cDNA配列、Ds-tagged 変異体、ファミリー間のマルチプルシークエンスアライメント、系統樹、機能モチーフなどが収録されています。
description: RARTF is a database of Arabidopsis transcription factors grouped into families listed on the front page. After selecting a family, users can then explore transcription factors in that group. Sequence, results of family-specific BLAST, and protein motif displays are available for each TF. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11118137
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16769687
landing page: http://rarge.psc.riken.jp/rartf/
theme: T0021
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
status: Active @en
status: 稼動中

nbdc00648
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: REBASE

nbdc00648
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: REBASE

REBASE
type: Dataset
alternative: The Restriction Enzyme Database
description: 制限酵素と関連するタンパク質に関する情報を収集したデータベースです。制限酵素の認識サイトや切断サイト、同一の塩基配列を認識するイソ制限酵素、入手先、メチル化感受性、文献情報などが収録されています。DNAメチルトランスフェラーゼやホーミングエンドヌクレアーゼ、DNAエンドヌクレアーゼ、特異的サブユニットなどのデータも含まれています。
description: REBASE is a database of restriction enzymes. The database contains entries by publication authors, and the database can be searched by identifiers such as name and number. Tools for digests and comparison of sequences are provided. @en
language: en
publisher: New England Biolabs Inc.
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19846593
landing page: http://rebase.neb.com/rebase/rebase.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0006
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00649
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: Recode v.2.0

nbdc00649
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: Recode v.2.0

Recode v.2.0
type: Dataset
title: Recode v. 2.0 @en
alternative: Database of translational recoding events
description: Recode2 is a database about genes which utilize non-standard translation for gene expression purposes. It contains information of recoding events such as programmed ribosomal frameshifting, translational bypassing (aka hopping) and mRNA specific codon redefinition. The sequences of the genes that use recoding for their expression are also included in this database. In this database, the recoding sites and the known stimulatory signals are annotated together with notes on factors that are known to affect recoding efficiencies. Each entry is downloadable in RecodeML format. The entire database is available in SQL format for an easy integration. @en
description: Recodingとは、塩基配列を通常の規則に沿わないで読み取ることを指します。Recodingが起こることにより、セレノシステインが挿入されたり、停止コドンが無視されたりなどの現象が起こります。これらの情報は通常の遺伝子に対するアノテーションに比較して遅れており、この「Recoding」に関する正確な情報を提供するためのサービスです。
language: en
publisher: University College Cork
  type: Organization
  address country: アイルランド
  address country: Ireland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19783826
distribution: Distribution
  rights: policy
  access URL: http://recode.ucc.ie/download
landing page: http://recode.ucc.ie/
theme: T0021
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00650
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RVD

nbdc00650
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RVD

RVD
type: Dataset
alternative: The Recombinant Virus Database
description: RVD is a database of sequence and functional information about recombinant viruses generated, in part, to understand gene expression and function. Viruses are classified by type and all viruses in the database can be browsed and searched by sequence or keyword. @en
description: 理研バイオリソースセンター遺伝子材料開発室で収集している組換えレトロウイルス、組換えアデノウイルス、DNAクローンのデータベースです。組換えアデノウイルスは、研究で実際に使用されたクローンならびに当開発室で独自に開発したクローンを収集しており、他にはないユニークなものが多数あります。STSマーカー情報や標準操作手順書も掲載されています。
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://dna.brc.riken.jp/rvd/index.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0001
theme: T0017
theme: T0018
theme: T0021
status: Active @en
status: 稼動中

nbdc00651
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-01-14
source: Integbio Database Catalog
primary topic: RED II

nbdc00651
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-14
source: Integbio Database Catalog
primary topic: RED II

RED II
type: Dataset
alternative: Rice Expression Database II @en
description: イネウィルストランスクリプトームプロジェクト（2007年～）において得られた、9種類のイネウイルスに感染させたイネの遺伝子発現データを収録したデータベースです。マイクロアレイは、Agilentカスタムアレイ（44k 60mer oligo-based microarray system) を用いています。
language: en
publisher: 国立研究開発法人農業生物資源研究所
  type: Organization
  label: National Institute of Agrobiological Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://cdna01.dna.affrc.go.jp/cDNA/EXPRESSION/description.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0024
theme: T0001
status: 運用終了
status: Closed @en

nbdc00652
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RefDIC

nbdc00652
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RefDIC

RefDIC
type: Dataset
alternative: Reference Database of Immune Cells
description: RefDIC is a database of immune cell gene expression information with data from mRNA expression experiments on several cell types, and particular focus on immunologically relevant cells. In addition to expression profiles, several tools are available to aid in characterization and functional annotation. @en
description: 代表的な免疫関連細胞の標準的な状態（無刺激、もしくはごく一般的な刺激後）のmRNAプロファイル、タンパク質定量プロファイルデータを閲覧、ダウンロード、解析できるデータベースです。測定プラットフォームは、Affymetrix GeneChip、Luminex、二次元電気泳動です。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17893089
distribution: Distribution
  rights: http://refdic.rcai.riken.jp/document.cgi?page=disc
  access URL: http://refdic.rcai.riken.jp/dataset.cgi?form=download
landing page: http://refdic.rcai.riken.jp/welcome.cgi
theme: T0024
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00653
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RegTransBase

nbdc00653
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: RegTransBase

RegTransBase
type: Dataset
alternative: A curated database of regulatory interactions in Prokaryotes @en
description: RegTransBase is a database of regulatory regions in prokaryotes. The database contains two sets of data, one collected from the literature and one carefully manually currated. Users can browse by categories including taxa, phenotype, or technique, or search by gene, effector, or full text. Several annotation databases are available for download. @en
description: 原核生物の転写制御について、文献情報を基に手作業でキュレートした転写制御相互作用情報と転写因子結合サイト情報、検証に用いた実験情報を提供しています。遺伝子名や制御因子名、エフェクター、その他フリーワードによる検索が可能です。
language: en
publisher: Lawrence Berkeley National Laboratory
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17142223
distribution: Distribution
  access URL: http://regtransbase.lbl.gov/cgi-bin/regtransbase?page=downloads
landing page: http://regtransbase.lbl.gov/cgi-bin/regtransbase?page=main
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
status: 休止
status: Inactive @en

nbdc00654
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-19
source: Integbio Database Catalog
primary topic: Rfam

nbdc00654
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-19
source: Integbio Database Catalog
primary topic: Rfam

Rfam
type: Dataset
alternative: RNA family database
description: 構造RNAの配列ファミリーを収録したデータベースです。RNAファミリーは、非コードRNA遺伝子、シス制御エレメント、自己スプライシングRNAの3つに分類され、保存された二次構造を持つことが知られています。現在、1,446のファミリーが登録されており、ファミリーごとに、概要、配列、マルチプルアライメント、二次構造、文献、キュレーション情報が表示されます。概要はWiki方式による編集も可能です。
description: Rfam is a database of RNA sequence and structure families. The database contains information on families and sequences of constituent members which can be searched by keyword or taxonomy. Data can also be downloaded via FTP. @en
language: en
publisher: EMBL-EBI
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608160
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21062808
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18945806
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18953034
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520045
references: http://rdf.ncbi.nlm.nih.gov/pubmed/25392425
distribution: Distribution
  description: http://rfam.xfam.org/help#tabview=tab8
  rights: COPYING
  access URL: ftp://ftp.ebi.ac.uk/pub/databases/Rfam/
landing page: http://rfam.xfam.org
theme: T0021
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
status: Active @en
status: 稼動中

nbdc00655
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RIKEN ENU-based gene-driven mutagenesis system

nbdc00655
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RIKEN ENU-based gene-driven mutagenesis system

RIKEN ENU-based gene-driven mutagenesis system
type: Dataset
title: RIKEN ENU-based gene-driven mutagenesis @en
description: 理研ENU-based gene-driven mutagenesis system (RGDMS)は次世代版ジーンターゲッティングシステムとして一般に公開しています。新規変異マウス研究開発チームは、RGDMSを主要な業務活動のひとつとして変異マウス系統を提供してきました（ENU変異系統マウスは、遺伝子組換えマウスではありません）。RGDMSは2000-2008年に理研ゲノム総合科学研究センター個体遺伝情報研究チームによって開発されたもので、2008年以降は理研バイオリソースセンターにおいて、誰でも利用可能な「次世代版ジーンターゲッティングシステム」として利用の公開と、マウスリソースの開発、提供が促進されています。ユーザが希望している標的遺伝子は「現在の標的遺伝子リスト」から公開しています。申し込まれた標的遺伝子につき、年間100～150系統の点突然変異マウス系統を提供することができます。一般に公開されている系統は「公開中のENU変異マウス系統」から確認することができます。入手希望の場合は、BRC実験動物開発室から分与いたします。
description: RIKEN ENU-based gene-driven mutagenesis is a collection of information on the ENU-based gene-driven mutagenesis system and ENU mutant mice resources. This site contains the target gene list of the ENU-based gene-driven mutagenesis. The list includes gene names, locations of target genes and availability of mutant strains. Users can request resources to send the applicaition form by courier. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17584492
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19558788
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16139793
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18781157
landing page: http://www.brc.riken.go.jp/lab/mutants/jp/genedriven_name.htm
landing page: http://www.brc.riken.go.jp/lab/mutants/genedriven_name.htm
theme: T0014
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0017
status: Active @en
status: 稼動中

nbdc00656
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Rhodococcus genome Project

nbdc00656
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Rhodococcus genome Project

Rhodococcus genome Project
type: Dataset
description: Rhodococcus Genome Project is the genome database for a bacteria which can break down polychlorinated biphenyls. The site includes a genome browser, BLAST search, and sequence retreival tools. Genome and other sequence data is available for download. @en
description: PCB分解微生物Rhodococcus sp.のRHA1株について、ゲノムDNA配列やアノテーション結果を提供しています。BLAST検索やゲノムブラウザの利用も可能です。
language: en
publisher: Rhodococcus Genome Project
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15516593
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17030794
landing page: http://www.rhodococcus.ca/index.jsp
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/101510
theme: T0001
theme: T0007
theme: T0005
status: 休止
status: Inactive @en

nbdc00657
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: Rice Full-Length cDNA Encyclopedia DNABook

nbdc00657
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: Rice Full-Length cDNA Encyclopedia DNABook

Rice Full-Length cDNA Encyclopedia DNABook
type: Dataset
description: イネ完全長cDNA約3万2千個を収録したDNAブックです。農業生物資源研究所の所有する約3万2千個のイネcDNAをより一層有効活用する手段の1つとして、1冊の本の中にそれらの全cDNAを貼付けた書籍タイプのDNAブックを作製しました。新たな方法でのクローン提供が可能となることから、穀類ゲノム研究をはじめ植物生命科学研究への貢献が期待されます。
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://gerg03.gsc.riken.jp/DNABook_DB/VIEW/Book_Top.php?BOOK_ID=BOOK_5
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0002
theme: T0017
status: 運用終了
status: Closed @en

nbdc00659
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-02
source: Integbio Database Catalog
primary topic: RIKEN Arabidopsis Activation tagging line

nbdc00659
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-02
source: Integbio Database Catalog
primary topic: RIKEN Arabidopsis Activation tagging line

RIKEN Arabidopsis Activation tagging line
type: Dataset
description: このデータベースは、約500のシロイヌナズナ形態的変異株についての形質とT-DNA挿入部位のゲノムDNA配列について記載されたものです。 アクティベーションタギング法によりシロイヌナズナの突然変異体（gain-of-function型）約50,000ラインが作成され、形質観察が行われています。 2015年6月にSciNeSから理研メタデータベースの下に移行しました。
description: This database of Arabidopsis mutant lines contains several hundred mutant T1 lines with visible phenotypes produced by activation tagging. Users can order seeds of interest. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10069079
references: http://rdf.ncbi.nlm.nih.gov/pubmed/1455228
landing page: http://metadb.riken.jp/metadb/db/SciNetS_ria37i
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
status: Active @en
status: 稼動中

nbdc00660
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RIKEN BRCのバイオリソース

nbdc00660
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RIKEN BRCのバイオリソース

RIKEN BRCのバイオリソース
type: Dataset
title: RIKEN BRC @en
alternative: RIKEN BioResource Center @en
description: マウスを中心とした実験動物、シロイヌナズナを中心とした実験植物、ヒトや動物の細胞材料、微生物・動物・ヒト由来DNA等の遺伝子材料、微生物材料等、ライフサイエンス研究の発展に 不可欠なバイオリソースを収集し、リソースの所在・特性に関する情報環境を整備するとともに、リソースを高度な品質管理の下に増殖・保存し、国内外の研究者等に提供する「世界最高水準の研究基盤」を整備しています。トップページに各リソース配布先のリンクが存在します。
description: RIKEN BRC is a portal site for biological resources and associated bioinformatics tools maintained by RIKEN. RIKEN BRC contains catalogs and search systems for experimental animals, plants, cultured cell lines and DNA materials. Users can search available resources from the website of each search system or catalog. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://brc.riken.jp/
landing page: http://www.brc.riken.jp/inf/en/index.shtml
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: Active @en
status: 稼動中

nbdc00661
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-05
source: Integbio Database Catalog
primary topic: RIKEN BRC Arabidopsis activation (T-DNA)-tagged lines

nbdc00661
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-05
source: Integbio Database Catalog
primary topic: RIKEN BRC Arabidopsis activation (T-DNA)-tagged lines

RIKEN BRC Arabidopsis activation (T-DNA)-tagged lines
type: Dataset
title: Arabidopsis activation (T-DNA)-tagged lines @en
description: シロイヌナズナのアクティベーションタグラインは、理研バイオリソースセンター（BRC）または理研ゲノム科学総合研究センター植物ゲノム機能情報研究グループ植物変異探索研究チームにおいて、Dr. Waldenらが作成したT-DNA ベクター、pPCVICEn4HPTをAgrobacteriumの系を用いて野生株（Col-0）に導入することにより作成されました。本ラインの特徴は、T-DNAの挿入による遺伝子破壊とともにT-DNA中に存在するエンハンサーの効果により近傍遺伝子の過剰発現効果が期待できることにあります。本ラインはスクリーニングに供することを前提として種子プールの形で提供されます。
description: Arabidopsis activation (T-DNA)-tagged lines is a database of T-DNA-tagged Arabidopsis plants maintained by RIKEN BioResource Center (RIKEN BRC). This database includes information on activation-tagged line resources such as the style of distribution, background ecotype, the vector for transformation, the selection marker, etc, and the list of lines with dominant or recessive phenotypes. Each record in the list contains a picture and phenotype data on plant growth (the dwarf phenotype), leaves and others. Users can order a seed pool set for screening or mutant lines in the list by e-mail. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://epd.brc.riken.jp/ja/resource/catalog_plantc/actic
landing page: http://epd.brc.riken.jp/en/seed/activ
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0013
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00662
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: RIKEN BRC CELL BANK

nbdc00662
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: RIKEN BRC CELL BANK

RIKEN BRC CELL BANK
type: Dataset
title: Cell Search System - RIKEN BRC CELL BANK @en
description: 理研・細胞材料開発室が収集、培養し、提供する細胞株のデータベースです。従来の培養細胞株に加えて、ヒトのiPS細胞、胚性幹細胞（ES細胞）、体性幹細胞（臍帯血、間葉系幹細胞等）、マウスやウサギのiPS細胞、マウスES細胞などを収録しています。また、日本人や他のモンゴロイド由来の不死化細胞株のコレクションも含まれています。それぞれの細胞株について、寄託者や動物種などの基本情報、培養情報、使用条件、提供申込情報などを記載しています。
description: Cell Search System is a database of cultured cell lines derived from animal and human tissues maintained by RIKEN BioResource Center (RIKEN BRC). Although a home page of the site is written in Japanese, the keyword search system is available in English. Records are written in both Japanese and English, and each record contains a general character, animal common name (the species a cell line is derived from), tissue, photo, etc. Users can search available cell lines by keywords, and order them by e-mail. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://cellbank.brc.riken.jp/cell_bank/WebSearch/?lang=En
landing page: http://cellbank.brc.riken.jp/cell_bank/WebSearch/?lang=Ja
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9534
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10036
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8355
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/55057
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9541
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9986
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8293
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7957
status: Active @en
status: 稼動中

nbdc00663
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-06
source: Integbio Database Catalog
primary topic: RIKEN BRC DNA BANK

nbdc00663
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-06
source: Integbio Database Catalog
primary topic: RIKEN BRC DNA BANK

RIKEN BRC DNA BANK
type: Dataset
description: 理研・遺伝子材料開発室（旧DNA開発銀行）が収集した汎用宿主ベクター系とクローン化遺伝子を中心に、様々な研究機関、研究者から寄付・寄託された「動物および微生物のDNA」の収集・保存・提供を行うサイトです。遺伝子発現用・タンパク質産生用クローン＆ベクター、遺伝子解析のためのリソース、クローンセット＆関連リソース、生物種別リソース、組換えウイルス、微生物株由来やマウス系統由来のゲノムDNAが提供されています。キーワードによる検索や寄託者リスト、Gene Set Collectionからの検索が可能です。
description: RIKEN BRC DNA BANK is a database of cloned DNA, vector and recombinant adenovirus resources maintained by RIKEN BioResource Center (RIKEN BRC). Each record contains the type (DNA, vector, shuttle vector or virus), classification (plasmid, cosmid, phage, recombinant adenovirus, etc), the organism of inserted DNA, description, gene name and others. Users can search available resources by keywords from those items. This database also provides laboratory manuals, supplemental data and publication lists about the resources. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://dna.brc.riken.jp/ja/
landing page: http://dna.brc.riken.jp/en/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9542
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: Active @en
status: 稼動中

nbdc00664
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-07-17
source: Integbio Database Catalog
primary topic: JCM微生物リソースメタデータ

nbdc00664
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-07-17
source: Integbio Database Catalog
primary topic: JCM微生物リソースメタデータ

JCM微生物リソースメタデータ
type: Dataset
title: Metadata of JCM resources @en
description: 理研バイオリソースセンターが生物遺伝材料として提供する微生物株を収録しています。様々な種の微生物について、株としての情報を特性や表現型情報も含めて提供しています。生物種名、来歴、培養培地などにより検索できます。 また、理研・微生物材料開発室 (Japan Collection of Microorganisms : JCM) のサイト (http://jcm.brc.riken.jp/ja/) のオンラインカタログからも検索が可能です。
description: JCM is a database of cultured microbial strains and their genomic DNA samples maintained by RIKEN BioResource Center (RIKEN BRC). JCM stocks strains of aerobic and anaerobic bacteria including actinomycetes, archaea and fungi including yeasts. Each entry contains the scientific name, accession numbers, culture medium data and reference information. Users can search available resources by keywords from those items, and order them by FAX or e-mail. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22105532
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22339691
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21764984
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21378133
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21724957
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21724955
landing page: http://metadb.riken.jp/metadb/db/rikenbrc_jcm_microbe
theme: T0016
theme: T0014
theme: T0017
status: Active @en
status: 稼動中

nbdc00665
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RIKEN BRC PLANT DATABASE SERCH - BLAST Search

nbdc00665
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RIKEN BRC PLANT DATABASE SERCH - BLAST Search

RIKEN BRC PLANT DATABASE SERCH - BLAST Search
type: Dataset
description: 理研BRC実験植物開発室で提供しているシロイヌナズナを中心とした植物遺伝子材料のBLAST検索ができます。
description: This is a tool for BLAST searching multiple plant species. The website contains a sequence input window and allows users to specify the search parameters. Multiple species can be searched at the same time. @en
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.brc.riken.jp/lab/epd/blast/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/55458
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3711
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3689
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/145481
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4097
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3983
theme: T0002
theme: T0021
status: Active @en
status: 稼動中

nbdc00666
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: RIKEN Hub Database

nbdc00666
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: RIKEN Hub Database

RIKEN Hub Database
type: Dataset
description: 理研には約400の研究室があり、それぞれが自発的に研究成果の発表を行っています。データ公開も様々な形式で行われ、現在約80のデータ提供サイトがWeb上で公開されています。このため、どこでどのようなデータが公開されているのかが分かりづらく、公開データの再利用やコンピュータを使った統合利用が容易ではありませんでした。また、ライフサイエンスで扱われるデータのほとんどは、形式が定まっていない集積困難なデータであり、塩基配列やDNAチップデータのような集積リポジトリが存在しておらず、データ公開が容易ではありません。理研総合データベースでは、SWF(Semantic Web Folders)を使うことで、理研の公開データをセマンティック・ウェブのRDF形式に準拠させつつ、さらに数百テラ～ペタバイトにもなる膨大なオミックス実験データを関連付けて、SWFからダウンロードできるように計画しています。これにより、理研が公開するデータの永続性を担保するとともに、文部科学省が推進する「ライフサイエンス統合データベース」からの統合検索を可能にし、外部からのアクセスを容易にします。本データベースは2009年3月より公開を開始しました。
description: RIKEN Hub Database is an integrated database of data resources published by RIKEN. Thid database contains entries of databases, researchers, literature, omics annotations and biomedical resources (PosMed). This database provides search engines, genome browsers, tutorials and various other research tools. Users can search remarkable targets and recent published report trends for recent 5 years by keywords. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18263641
landing page: http://omicspace.riken.jp/db/index.html.ja?keyword=%E7%90%86%E7%A0%94
landing page: http://omicspace.riken.jp/db/index.html.en
theme: T0021
theme: T0001
theme: T0007
status: 運用終了
status: Closed @en

nbdc00667
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: RIKEN Human cDNA Encyclopedia Metabolome DNABook

RIKEN Human cDNA Encyclopedia Metabolome DNABook
type: Dataset
description: ヒトの代謝に関する遺伝子DNAを収録したDNAブックです。
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  address country: 日本
landing page: http://gerg03.gsc.riken.jp/DNABook_DB/VIEW/Book_Top.php?BOOK_ID=BOOK_2
theme: T0031
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: 運用終了

nbdc00668
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: RIKEN Mouse Genome Encyclopedia DNABook

nbdc00668
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-20
source: Integbio Database Catalog
primary topic: RIKEN Mouse Genome Encyclopedia DNABook

RIKEN Mouse Genome Encyclopedia DNABook
type: Dataset
description: 6万以上のマウス完全長cDNAクローンを収録したDNAブックです。DNAブックとは、DNAを固相化して紙に固定し、書籍の形にする技術です。通常の宅配便などで多種類のDNAを印刷された情報とともに研究者に配布することが可能で、受け取った研究者は容易な方法で短時間のうちに必要なDNAを回収することができます。
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://gerg03.gsc.riken.jp/DNABook_DB/VIEW/Book_Top.php?BOOK_ID=BOOK_1
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: T0017
status: 運用終了
status: Closed @en

nbdc00669
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-25
source: Integbio Database Catalog
primary topic: SciNeS

SciNeS
type: Dataset
alternative: Scientist's Networking System
description: 理研サイネスは、セマンティックウェブに準拠したウェブシステムです。セキュリティで区切られた多数のバーチャルラボを同時並列的に内包できるクラウド型のウェブシステムで、理研の生命情報基盤研究部門で研究開発され運営されています。理研サイネスのバーチャルラボを活用することで、個々の研究者は自らウェブサーバーを維持することなく、各自のデータベースを構築することができます。また、研究成果物としてスムーズに外部へ向け発信・発表公開することも可能です。各研究プロジェクトを機密性高く区切り、未公開情報の管理や大規模なデータを介した研究業務フローを、プロジェクトごとに柔軟に設定することができることから、研究プロジェクト内のデータガバナンスを向上させ、新しいタイプの学術メディアとしても期待されています。 理研サイネスは2015年6月1日をもって運用終了。理研の生命科学系データは「理研メタデータベース」(http://metadb.riken.jp) から引き続きご利用になれます。この中に、「SciNeS公開仕様集」 (http://metadb.riken.jp/metadb/db/SciNetS_ria160i) 、「SciNeSデータ構造」 (http://metadb.riken.jp/metadb/db/SciNetS_ria197i) という項目も収録されています。
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21076152
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21632604
landing page: https://database.riken.jp/sw/view
theme: T0031
status: 運用終了

nbdc00670
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-01-25
source: Integbio Database Catalog
primary topic: RSGI

nbdc00670
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-01-25
source: Integbio Database Catalog
primary topic: RSGI

RSGI
type: Dataset
alternative: RIKEN Structural Genomics/Proteomics Initiative @en
alternative: RIKEN Structural Genomics Proteomics Initiative
description: 理研構造プロテオミクス研究推進本部 (RSGI)のサイトです。ヒト、マウス、シロイヌナズナ、高度好熱菌、古細菌などを対象として、生命活動に重要なタンパク質や、創薬などの産業に有用なタンパク質を選び出し、その立体構造と機能を大量かつ迅速に解析した結果、および技術革新、発表論文などの研究成果を公開しています。立体構造の一覧やPBDへのリンク一覧、ターゲットトラッキングの一覧からデータが検索できます。
description: This site is a database of structures, functions and functional networks of proteins researched by RIKEN Structural Genomics/Proteomics Initiative. It contains three-dimensional (3D) folded structures, annotations and PDB list of proteins which are important of a life activity or valuable for drug designs. @en
language: ja
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.rsgi.riken.go.jp/
landing page: http://www.rsgi.riken.jp/rsgi_e/index.html
theme: T0031
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00671
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RIKEN-CIAT Cassava Full-Length Clone Database Search

nbdc00671
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-21
source: Integbio Database Catalog
primary topic: RIKEN-CIAT Cassava Full-Length Clone Database Search

RIKEN-CIAT Cassava Full-Length Clone Database Search
type: Dataset
description: This is a database of cassava cDNA clones with 5' and 3' sequence information for each clone. Users can search by gene or clone information, or locate clones by BLAST search. @en
description: 理研バイオリソースセンターが提供する、キャッサバの完全長cDNAクローンのデータベース検索サイトです。リソース番号、NCBI番号、クローン名やBLASTによる検索が可能です。
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.brc.riken.go.jp/lab/epd/catalog/cassavaclone.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3983
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00672
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ROUGE

nbdc00672
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ROUGE

ROUGE
type: Dataset
alternative: A Database of Rodent Unidentified Gene-Encoded Large Proteins Analyzed by Kazusa Mouse cDNA Project @en
description: かずさDNA研究所が同定したヒト長鎖遺伝子(KIAA cDNAs)のマウスホモログ(mKIAA cDNAs)の情報公開と遺伝子の配布を行っています。各エントリーにつき、クローン情報、cDNA配列、制限酵素マップ、シグナル配列、アミノ酸配列、InterProScanやSOSUIによるモチーフ探索結果が掲載されています。
description: ROUGE is a database of long rodent cDNA clones designed to compliment the HUGE database of long human cDNA clones. The database contains sequence information for mouse clones from the mKIAA sequencing project, which can be browsed or searched. ROUGE was conducted as part of the CREATE program. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14621295
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15188409
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15449545
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15368895
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12465718
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12693553
landing page: http://www.kazusa.or.jp/rouge/index.html
theme: T0021
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0006
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00673
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RPOPDB

nbdc00673
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RPOPDB

RPOPDB
type: Dataset
alternative: RIKEN Populus Database
description: RPOPDB is a Populus genome sequence resource with genome browser and search functions to explore the sequence of Populus. Keyword and BLAST search are available, and the BLAST search can be configured to include other plant species. @en
description: 10種類のポプラとヨーロッパクロマツのゲノム情報を収録したデータベースです。mRNAは、GenBank/DDBJ/EMBLを情報源としています。理研で収集、アノテーションしたPopulus nigra 完全長cDNA配列 (PnFL)は、BLAST検索により取得できます。
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18053163
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15653793
landing page: http://rpop.psc.riken.jp/index.pl
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3689
theme: T0002
status: 休止
status: Inactive @en

nbdc00674
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: S/MARt DB

nbdc00674
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: S/MARt DB

S/MARt DB
type: Dataset
alternative: The S/MAR transaction DataBase
description: S/MARt DB is a database of cellular scaffolds and matrix data. The database contains scaffold, matrix, and nuclear matrix information from species ranging from yeast to humans. genes with experimentally identified interactions with scaffold and matrix components are available in tabular or searchable formats. @en
description: 真核生物ゲノムにおけるMAR（マトリックス結合領域）、または、SAR（スキャフォールド付着領域）と呼ばれる核マトリックスに付着する染色体DNA配列と、それらに結合する核マトリックスタンパクに関する情報を収載しています。データは主に文献から取得しており、酵母からヒトまで幅広くカバーしています。非営利目的のユーザーはフリーで使用できます。
language: en
publisher: Gesellschaft fur Biotechnologische Forschung
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752340
landing page: http://smartdb.bioinf.med.uni-goettingen.de/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0005
status: Active @en
status: 稼動中

nbdc00675
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-10
source: Integbio Database Catalog
primary topic: SABRE

nbdc00675
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-10
source: Integbio Database Catalog
primary topic: SABRE

SABRE
type: Dataset
alternative: Systematic consolidation of Arabidopsis and other Botanical REsource @en
description: 植物で最も解析が進んでいるシロイヌナズナの研究成果を集めたデータベース「TAIR」の遺伝子情報を軸（串）とし、研究グループで収集・保存・提供しているシロイヌナズナ、ヒメツリガネゴケ、ポプラ、タバコ培養細胞など6種の遺伝子リソースを統合（串刺し）したデータベースシステムで、遺伝子名やキーワードを入力するだけで、すべての植物リソースの類似遺伝子やTAIRにある遺伝子情報を瞬時に得ることができます。現在公開中の植物に加えて、大豆や白菜などの作物の遺伝子情報を追加するための準備も進めており、塩害や砂漠化などに耐性のある「スーパー作物」を生み出す有益なツールとなることが期待されます。
description: SABRE is a database of plant resources. The database contains collected information about Arabidopsis and other plants, particularly cDNA sequences and clones. All clones in the database can be requested and acquired. @en
language: en
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24323624
landing page: http://saber.epd.brc.riken.jp/sabre/SABRE0101.cgi
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3218
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4097
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/98038
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3691
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3983
theme: T0002
theme: T0017
status: 運用終了
status: Closed @en

nbdc00676
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-06-20
source: Integbio Database Catalog
primary topic: SALAD Database

nbdc00676
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: SALAD Database

SALAD Database
type: Dataset
alternative: Surveyed conserved motif ALignment diagram and the Associating Dendrogram
description: SALADデータベースでは、植物間のアミノ酸配列の類似性をもとにデンドログラムを作成し、機能的に似たタンパク質をクラスタリングすることができます。特徴として、保存領域（モチーフ）の有無がグラフィカルに表示されること、植物種間でのアノテーション比較が容易であること、アノテーションの類似性を指標にクラスタリングできること、保存モチーフごとに簡単に分子進化系統樹を作成できること、冗長性のない全ゲノム情報を解析していること、クラスタリングにアミノ酸置換マトリックスを用いていることなどが挙げられます。最新版では、生物種10種間で比較ができます。
description: The SALAD database supports the construction of dendrograms from amino acid sequence similarities in plants, clustering them into proteins with similar functions. This database has following functions; 1) Conserved domains (motifs) can be displayed graphically,2) annotations between plant species can be compared easily 3) similar annotations can be clustered 4) molecular evolutionary trees can be constructed easily per conserved motif. The database uses non-redundant complete genomic information for the analysis, and an amino acid displacement matrix for clustering. The most current version supports comparisons of up to 10 plant species. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19854933
landing page: http://salad.dna.affrc.go.jp/salad/
landing page: http://salad.dna.affrc.go.jp/salad/en/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00677
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Wellcome Trust Sanger Institute

nbdc00677
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Wellcome Trust Sanger Institute

Wellcome Trust Sanger Institute
type: Dataset
description: サンガー研究所の研究部門やプロジェクトの紹介と、研究所で配列決定したゲノムデータのダウンロードサイト、開発したデータベースのリンク集とソフトウエアのダウンロードサイト、マウスとゼブラフィッシュの研究リソース配布サイトがあります。
description: Wellcome Trust Sanger Institute is a major European research program. The website contains information on the faculty and research projects at Sanger Institute as well as links to data sets available for download focused largely on genome sequencing projects. @en
language: en
publisher: Wellcome Trust Sanger Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
distribution: Distribution
  rights: open-access-science
  access URL: http://www.sanger.ac.uk/resources/downloads/
landing page: http://www.sanger.ac.uk
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00678
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Schizosaccharomyces pombe Postgenome Database

nbdc00678
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: Schizosaccharomyces pombe Postgenome Database

Schizosaccharomyces pombe Postgenome Database
type: Dataset
description: This is a database of gene information in Schizosaccharomyces pombe. The database contains information on the cloning of genes, intracellular location of proteins, and images. Data were attained by the Chemical genetics Laboratory of RIKEN and are available for browsing in this database. The Wellcome Trust geneDB is linked with this database. Expression vectors and strains are available for distribution. @en
description: 理研吉田化学遺伝学研究室で得られた分裂酵母Schizosaccharomyces pombe全遺伝子のクローニングに関する情報と、全タンパク質の細胞内局在情報、画像などが閲覧できます。現在、Sanger研究所のGeneDBにもリンクしています。また、分裂酵母の発現ベクターや株の提供を行っています。
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
landing page: http://www.riken.jp/SPD/index.html
theme: T0021
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0025
theme: T0029
theme: T0001
theme: T0007
theme: T0017
status: Active @en
status: 稼動中

nbdc00680
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-05
source: Integbio Database Catalog
primary topic: ラット系統検索 - RIKEN BRC

nbdc00680
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-05
source: Integbio Database Catalog
primary topic: ラット系統検索 - RIKEN BRC

ラット系統検索 - RIKEN BRC
type: Dataset
title: Rat Strain List - RIKEN BRC @en
description: 理研バイオリソースセンターで管理しているラットの系統の一覧が表示されます。RBRC No.やタイプ、系統名、特徴、文献、提供者が記述されています。
description: Rat Strain List is a database of rat resources maintained by RIKEN BioResource Center (RIKEN BRC). Each entry contains the RBRC number, type, strain name, description, reference and depositor's name (Japanese). Users can find available strains and contact information on depositors from the NBRP-Rat website (http://www.anim.med.kyoto-u.ac.jp/NBR/strains/Strains_list.aspx). @en
language: ja
publisher: 国立研究開発法人理化学研究所 筑波研究所
  type: Organization
  label: RIKEN Tsukuba Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://mus.brc.riken.jp/ja/outofdate/outof_2010/rat_detail
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0014
theme: T0017
status: Active @en
status: 稼動中

nbdc00681
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-02-02
source: Integbio Database Catalog
primary topic: SEVENS

nbdc00681
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-02
source: Integbio Database Catalog
primary topic: SEVENS

SEVENS
type: Dataset
description: This site offers the tabulated information of the GPCR (G-protein coupled receptor) genes of 56 eukaryotic species, from humans right down to budding yeast cells. For each of these species a detailed karyotype is offered indicating the position of each of the sequences identified. The list contains genes that are expressed in vivo as well as those that are lying dormant. The processes by which the sequences were found and screened include a gene finder, sequence alignment, domain and motif assignment and a predictor of transmembrane helixes. @en
description: Gタンパク共役型受容体（7回膜貫通タンパク質）遺伝子を既知のゲノム配列より予測した結果を収録しています。56種の真核生物ゲノムからバイオインフォマティクスツール（遺伝子検索ツール、配列アライメントツール、モチーフ・ドメイン同定ツール、膜貫通ヘリックス予測ツール）を用いて高精度に同定しています。
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16126348
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19718507
landing page: http://sevens.cbrc.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0001
status: Active @en
status: 稼動中

nbdc00682
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SMART

nbdc00682
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SMART

SMART
type: Dataset
alternative: Simple Modular Architecture Research Tool
description: SMART is a database of protein domains found in several different protein classes. The database contains classification information for domains and the proteins they can be found in. Users can search by sequence or domain information. The database can also be requested for local installation. @en
description: シグナル伝達タンパク質、細胞外タンパク質、クロマチンタンパク質のドメインのデータベースです。系統分類、機能クラス、立体構造、機能上重要な残基の情報があります。キーワード検索、HMMERを用いたドメイン検索、GO Termによる検索が可能です。
language: en
publisher: EMBL Heidelberg
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18978020
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9600884
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381859
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22053084
landing page: http://smart.embl-heidelberg.de
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6231
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0023
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7711
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6656
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33208
theme: T0028
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00683
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: snOPY

nbdc00683
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: snOPY

snOPY
type: Dataset
alternative: snoRNA Orthological Gene Database
description: snoRNA(核小体低分子RNA)のオーソログの情報を整備することを目的に、生物種ごとのsnoRNAの情報を網羅したデータベースを構築しています。現在は、35生物種15,619件のsnoRNAについて、配列やモチーフ、遺伝子座、ターゲットRNAの情報等を提供しています。
description: snOPY is a database of small nucleolar RNA orthology. The database contains snoRNA sequences for several model organisms and related species. In addition to snoRNA sequences the database provides information on target sequences and gene loci. BLAST search and annotations of snoRNA targeted sites are available. @en
language: en
publisher: 宮崎大学 フロンティア科学実験総合センター
  type: Organization
  label: University of Miyazaki Frontier Science Research Center @en
  address country: Japan @en
  address country: 日本
landing page: http://snoopy.med.miyazaki-u.ac.jp
theme: T0021
theme: T0028
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
status: Active @en
status: 稼動中

nbdc00684
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SNPedia

nbdc00684
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SNPedia

SNPedia
type: Dataset
description: SNPedia is a database of human genetic variation. The database contains entries on DNA variations collected from primary literature. A for-payment tool is also available which helps users annotate genotype information. Users can access SNPs by rs number to explore established functions in disease. @en
description: SNPediaは、ヒトのDNA変異に関する情報共有を目的としたwiki形式のサイトです。遺伝子名、ゲノム、医薬品名、病名のリストから、それぞれSNP情報を確認することができます。
language: en
publisher: River Road Bio
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140107
distribution: Distribution
  rights: Terms of Use
  access URL: http://www.snpedia.com/index.php/Bulk
landing page: http://www.snpedia.com/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00685
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-25
source: Integbio Database Catalog
primary topic: rsoy

nbdc00685
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-25
source: Integbio Database Catalog
primary topic: rsoy

rsoy
type: Dataset
alternative: RIKEN Soybean Full-Length cDNA Database @en
description: ダイズの完全長cDNAの全データを閲覧できるデータベースです。理化学研究所では世界で初めてダイズの完全長cDNAを大規模に解析し、約23,000種のcDNAの全データを公開しました。本研究では、日本の代表的なダイズ栽培品種のルーツである「農林二号」の約40,000種の完全長cDNAを単離後、重複を除いた約23,000種のcDNAの部分塩基配列情報（EST）を決定し、その中から約4,700種のcDNA全長配列を決定しました。
description: This is a database of soybean cDNA sequences. In addition to soybean sequence information, it contains collected sequence information for several species, which can be searched by keyword or BLAST, such that users can compare soybean sequences to those of other plants. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18927222
landing page: http://spectra.psc.riken.jp/menta.cgi/rsoy/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: T0002
status: Active @en
status: 稼動中

nbdc00686
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-06-03
source: Integbio Database Catalog
primary topic: SpBase

nbdc00686
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-06-03
source: Integbio Database Catalog
primary topic: SpBase

SpBase
type: Dataset
alternative: Strongylocentrotus purpuratus database @en
description: SpBase is a database of the sea urchin genome. In addition to a genome browser, the database contains several types of sequence and gene expression information as well as links to external resources. Bulk data is available for download. @en
description: ムラサキウニのcDNAマイクロアレイライブラリおよびゲノムDNAについてのデータベースです。アメリカムラサキウニ（Strongylocentrotus purpuratus）とその近縁種のゲノムレベルの情報や材料を提供していたSUGP（Sea Urchin Genome Project）の後継です。ゲノムブラウザやBLAST検索も可能です。 後継サイトとしてEchinobase （http://integbio.jp/dbcatalog/record/nbdc01512） が公開されています。
language: en
publisher: California Institute of Technology
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19010966
landing page: http://www.spbase.org/SpBase/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7625
theme: T0024
theme: T0001
theme: T0002
status: 運用終了
status: Closed @en

nbdc00687
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SRA

nbdc00687
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SRA

SRA
type: Dataset
alternative: Sequence Read Archive
description: SRA is a database of raw sequence reads from next-generation sequencing systems. The database contains millions of unannotated raw reads generated from a variety of projects. Data can be submitted to the archive or downloaded via FTP. @en
description: 次世代シーケンサーによる配列データのレポジトリサイトです。現在扱っているプラットフォームは454(ロシュ)、Genome Analyzer(イルミナ)、SOLiD(アプライドバイオシステムズ)、Heliscope(ヘリコス)。研究単位でデータの登録、配布を行っています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22009675
distribution: Distribution
  rights: policies.shtml
  access URL: http://www.ncbi.nlm.nih.gov/books/NBK242621/
landing page: http://www.ncbi.nlm.nih.gov/sra
theme: T0021
theme: T0001
theme: T0006
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00688
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-06-14
source: Integbio Database Catalog
primary topic: SRPDB

nbdc00688
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-06-14
source: Integbio Database Catalog
primary topic: SRPDB

SRPDB
type: Dataset
alternative: Signal Recognition Particle Database @en
description: シグナル認識粒子(SRP)の構造と機能に関するデータベースです。アノテーション付けされたSRP RNAとSRPタンパクの配列を提供しています。SRPコンポーネントの構造情報の他に、比較配列解析によるRNA二次構造ダイアグラム、SRP仲介タンパクの輸送に関わる他のタンパクの情報等が含まれています。
description: SRPDB is a database of signal recognition particle sequences in bacteria, archaea, fungi, and plants. The database contains background information on SRPs and SRP proteins, and sequence alignment as well as 3D structure information for SRP RNAs. @en
language: en
publisher: Department of Biochemistry University of Texas Health Science Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381838
landing page: https://rth.dk/resources/rnp/SRPDB/SRPDB.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0022
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00689
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: STRBase

nbdc00689
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: STRBase

STRBase
type: Dataset
alternative: Short Tandem Repeat DNA Internet Database @en
description: STRマーカーを用いる法医学DNAタイピングコミュニティのための情報リソースとして、1997年から運用されています。STRシステムの配列情報、人口データ、一般的に使用されている多重STRシステム、PCRプライマーと条件、STRアリル解析のための様々な技術のレビューが掲載されています。
description: STRBase is a database of markers for human identification. The database contains information on the use of genetic markers, particularly short tandem (microsatellite) repeats for forensic purposes. Lists of commonly used STRs are available as well as methodologies, and other marker types, species, and resources are also provided. @en
language: en
publisher: National Institute of Standards and Technology
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125125
landing page: http://www.cstl.nist.gov/div831/strbase/
theme: T0021
theme: T0031
theme: T0005
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theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00690
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: STRING

nbdc00690
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: STRING

STRING
type: Dataset
alternative: Search Tool for the Retrieval of Interacting Genes/Proteins @en
description: タンパク質相互作用情報のデータベースです。相互作用は既知のものと推定のものがあり、直接的（物理的）および間接的（機能的）関係が含まれています。情報源は高スループット実験や共発現実験のレポジトリ、コンピュータ予測、文献から取得しています。異なる生物間での比較も可能です。タンパク質名や配列による検索が可能で、目的のタンパク質と相互作用するタンパク質とその関係性がネットワーク形式で視覚的に分かりやすく表示されます。
description: STRING is a database of known and predicted protein interactions, including both physical and functional interactions. It contains data which derived from four sources: genomic context, high-throughput experiments, coexpression and previous knowledge. This database quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. It performs iterative searches and visualizes the results in their genomic context. Many data including protein sequences, protein network, interaction types for protein links, orthologous groups or full database dumps (license required) are downloadable. @en
language: en
publisher: STRING開発チーム
  type: Organization
  label: the string team @en
  address country: Global
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10982861
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18940858
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608232
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519996
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17098935
distribution: Distribution
  description: show download page.pl
  rights: show download page.pl
  access URL: http://string-db.org/newstring_cgi/show_download_page.pl
landing page: http://string-db.org/
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theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00691
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-12-24
source: Integbio Database Catalog
primary topic: Structure

nbdc00691
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-12-24
source: Integbio Database Catalog
primary topic: Structure

Structure
type: Dataset
description: Structure is a database of three-dimensional structures of biological molecules. The database contains entries for individual molecules as well as multi-component complexes. Several tools are available to examine macromolecular structures, and users can submit and download data via FTP. @en
description: Structure（またはMMDB）は、Protein Data Bank (PDB)に登録されている結晶解析やNMR構造解析の実験データを収録しているデータベースです。タンパク、DNA、RNAそれぞれ単独の構造や、これらの複合体、化学物質との複合体の構造が登録されており、各構造につき、文献情報や配列データベース等のリンク情報が含まれています。NCBIで提供している3D構造ビューワ（Cn3D)を用いることにより、分子構造を効果的に表示できます。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22135289
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22102591
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8804824
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17135201
references: http://rdf.ncbi.nlm.nih.gov/pubmed/125200
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10838572
distribution: Distribution
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/mmdb/
landing page: http://www.ncbi.nlm.nih.gov/structure
landing page: http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure
theme: T0022
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theme: T0007
theme: T0005
theme: T0006
status: Active @en
status: 稼動中

nbdc00692
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SubtiList World-Wide Web Server

nbdc00692
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SubtiList World-Wide Web Server

SubtiList World-Wide Web Server
type: Dataset
description: SubtiList is a database of the Bacillus subtilis genome. The database contains sequence and positional information for all genes mapped in the reference strain collected from the sequencing project and other databases. The genome can be searched by gene or region, and an interactive map tool is available. Users can also join a mailing list for updates. @en
description: B. subtilis 168株由来の完全DNA配列およびタンパク配列のデータセットを提供しています。遺伝子名やゲノム位置、キーワード等の様々な条件で検索することができます。枯草菌ゲノムシーケンスプロジェクトの成果を主な情報源とし、他の公共データベースや文献情報なども掲載されています。
language: en
publisher: Institut Pasteur
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7704253
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9678589
landing page: http://genolist.pasteur.fr/SubtiList/
theme: T0021
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1423
status: Active @en
status: 稼動中

nbdc00693
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-12-17
source: Integbio Database Catalog
primary topic: SubtiWiki

nbdc00693
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-17
source: Integbio Database Catalog
primary topic: SubtiWiki

SubtiWiki
type: Dataset
description: 枯草菌の遺伝子とタンパク質に関する統合データベースです。遺伝子名、機能説明、分子量、タンパク質の長さ、タンパク質の機能などの詳細情報や、パスウェイ、タンパク質ータンパク質の相互作用の情報を収録しています。 各レコードはパスウェイ、発現、相互作用、調節、ゲノムのブラウザによる検索が可能です。また細胞内プロセス、代謝などのカテゴリや調節因子一覧による絞り込みも可能です。 枯草菌の研究グループ、プラスミドの情報、実験方法のwikiページも提供しています。
description: SubtiWiki is a collaborative user database for the bacterium Bacillus subtilis. The database contains user annotations of genes, annotations, pathways, and interactions. Users can contribute and download several different summary information tables. @en
language: en
publisher: Georg-August-Universitat Gottingen
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/26433225
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20157485
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22096228
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19959575
distribution: Distribution
  access URL: http://subtiwiki.uni-goettingen.de/v3/exports
landing page: http://subtiwiki.uni-goettingen.de/
theme: T0024
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theme: T0030
status: Active @en
status: 稼動中

nbdc00694
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: Swine Marker Viewer

nbdc00694
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: Swine Marker Viewer

Swine Marker Viewer
type: Dataset
description: ブタのDNAマーカー情報です。プライマー情報、連鎖地図、RH地図を提供しています。
description: This is a viewer of Swine DNA marker. It provides information of the primers, results of linkage map analysis and RH analysis. This site is a part of 'Animal Genome Research Program' (http://integbio.jp/dbcatalog/en/record/nbdc00338). @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://agp.dna.affrc.go.jp/agp/db/marker/marker.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00695
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: SWISS-2DPAGE

nbdc00695
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: SWISS-2DPAGE

SWISS-2DPAGE
type: Dataset
alternative: SWISS-Two-dimensional polyacrylamide gel electrophoresis database
description: 様々な2D-PAGEやSDS-PAGEを用いて同定されたタンパク質のデータを収録しています。各エントリーには、タンパク質名、生物種、文献、電気泳動マップと該当スポット、UniProtKB/Swiss-Protのアノテーションおよび外部の様々なデータベースのリンクが含まれています。
description: SWISS-2DPAGE is a database of proteomic information. The database contains images and identified proteins in species from E. coli to human from a series of 2D-PAGE experiments used to identify proteins by size and charge. The database can be searched by several identifiers or accessed by viwing gel images. Data is available for download via FTP. @en
language: en
publisher: Swiss Institute of Bioinformatics
  type: Organization
  address country: スイス
  address country: Switzerland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847204
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15274128
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592248
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399867
distribution: Distribution
  description: manch2d.html
  rights: license.txt
  access URL: ftp://ftp.expasy.org/databases/swiss-2dpage
landing page: http://world-2dpage.expasy.org/swiss-2dpage/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/44689
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/158879
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00696
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TAB project

nbdc00696
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: TAB project

TAB project
type: Dataset
alternative: Transcription Analysis of BY-2
description: 植物のモデル細胞として最も広く用いられているタバコ培養細胞株BY-2について、cDNAライブラリを構築し、EST解析を行いました。各ESTの配列や相同性検索結果を公開しています。
description: This site provides information about the results found in a collaborative project of the Laboratories for Structural Construction and for gene Regulation, both housed in the Plant Science Center, RIKEN. Tobacco BY-2 cells were researched and resulted in the collection of EST and microarray information. A Blast search option is available. The FASTA format of the sequence researched is required. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://mrg.psc.riken.go.jp/strc/index.htm
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4097
theme: T0002
status: 休止
status: Inactive @en

nbdc00697
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-03
source: Integbio Database Catalog
primary topic: TAIR

nbdc00697
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-03
source: Integbio Database Catalog
primary topic: TAIR

TAIR
type: Dataset
alternative: The Arabidopsis Information Resource @en
description: TAIR is a database of Arabidopsis thaliana information. The database contains genetic and molecular information for the plant, including several browseable data formats including seed stocks, gene names, and mutant collections. Users can download data from several categories, from images to gene expression microarrays. @en
description: シロイヌナズナについて、ゲノム、遺伝子、分子生物学的データなどを包括的に収集したデータベースです。注釈付けされたゲノム、遺伝子産物、代謝、遺伝子発現、マーカー、株リソース情報、文献情報を提供しています。GBrowseやインタラクティブSeqViewerゲノムブラウザによるブラウズ、およびキーワード検索が可能です。 シロイヌナズナ生物資源センター（ABRC）が保有する株のカタログや注文ページ、検索ページなどには無料でアクセスできますが、DB全てのページにアクセスするにはライセンスの登録（有料）が必要です。
language: en
publisher: Ohio State University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17986450
references: http://rdf.ncbi.nlm.nih.gov/pubmed/26201819
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22140109
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519987
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125061
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12444417
distribution: Distribution
  description: index.jsp
  rights: https://www.arabidopsis.org/doc/about/tair_terms_of_use/417
  access URL: ftp://ftp.arabidopsis.org/home/tair
landing page: http://www.arabidopsis.org
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
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theme: T0026
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theme: T0002
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theme: T0019
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00698
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Tandem Repeats Database

nbdc00698
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Tandem Repeats Database

Tandem Repeats Database
type: Dataset
description: ゲノムDNAのタンデムリピート情報を収集したデータベースです。UCSCのゲノムデータをデータソースとしています。ゲノムごとに、タンデムリピート配列、サイズ、コピー数、塩基含量％が表示されます。ユーザ自身の配列をTandem Repeats Finder（塩基配列上にある繰り返し配列を検出してくれるツール）で解析することもできます。
description: TRDB is a database of repeated genetic sequences. Users can query repeat sequences, use an analysis tool to find repeats in a query sequence, design primers, analyze mutations and origins of repeated sequences, and download several data types. Login required. @en
language: en
publisher: Boston University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17175540
landing page: http://tandem.bu.edu/cgi-bin/trdb/trdb.exe?taskid=7
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7165
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/47144
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/161448
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6238
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7234
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7237
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8364
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7460
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/419719
theme: T0003
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7245
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/31033
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13616
status: Active @en
status: 稼動中

nbdc00699
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: TassDB

nbdc00699
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: TassDB

TassDB
type: Dataset
alternative: Tandem Splice Site DataBase @en
description: TassDB is a database of alternative gene splicing information. The database contains three different resources describing experimentally validated (GYNGYN and NAGNAG or GYN(0-10)GYN and NAGN(0-10)AG) or computationally predicted splicing donor and acceptor sites using different sequence specificity criteria. Users can search for genes or splice site types, and data is available for download. @en
description: GY(N)0-10GYNドナーとNAG(N)0-10AGアクセプター間で生じる選択的スプライシングに関するデータを提供しています。現在、ヒトとマウスの遺伝子について、2-12塩基の距離にあるタンデムスプライス部位が収録されています。1,329,181件のタンデムスプライス部位が収録されており、内14,312件は選択的スプライシングのエビデンスとなるEST/mRNA配列が示されています。
language: en
publisher: Albert-Ludwigs-University Freiburg
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20429909
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17142241
landing page: http://www.tassdb.info/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00700
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Taxonomy - NCBI

nbdc00700
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Taxonomy - NCBI

Taxonomy - NCBI
type: Dataset
description: NCBI Entrezデータベースに少なくとも1件以上登録されている全ての生物種と上位分類名を収集したデータベースです。160,000以上の生物種が登録されています。各エントリーには、学名、英名、階層分類、上位階層、Entrezデータベース群の収録数とリンクが含まれています。このデータベースは、種々のデータベース間で生物名の表記を統一することを目的として構築しており、分類学や系統発生学の権威となるものではありません。採用されている生物名や系統分類は、分類学的、系統発生学的に普及している内容と異なる場合があります。
description: Taxonomy is a database of systematic classifications of organisms repesented in public sequencing databases. The database contains phylogenetic relatonships and nomenclature for an estimated 10% of all living species. Tools include a browser, genetic codes, and a common evolutionary tree. Taxonomic classificatinos can be downloaded via FTP. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18940862
distribution: Distribution
  description: taxdump readme.txt
  description: gi taxid.readme
  description: taxcat readme.txt
  rights: policies.shtml
  access URL: ftp://ftp.ncbi.nih.gov/pub/taxonomy/
landing page: http://www.ncbi.nlm.nih.gov/taxonomy
theme: T0014
theme: T0019
theme: T0027
status: Active @en
status: 稼動中

nbdc00701
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TFdb

nbdc00701
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: TFdb

TFdb
type: Dataset
alternative: Riken Transcription Factor Database @en
description: 本データベースはマウスの転写因子遺伝子とその関連遺伝子を収録したデータベースです。マウスゲノムの非冗長な転写因子遺伝子セットが提供されます。遺伝子名、Gene Ontology、InterPro、RefSeqと、cDNA clonesの情報やリンクが表示されます。
description: TFdb is a database of mouse transcription factors. The database contains information on known transcription factors, which are collated and annotated from several independent sources. Users can browse or search the database and retrieve ontology and sequence information. @en
language: en
publisher: 国立研究開発法人理化学研究所 横浜研究所
  type: Organization
  label: RIKEN Yokohama Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15336533
distribution: Distribution
  rights: TFdb
  access URL: http://genome.gsc.riken.jp/TFdb/
landing page: http://genome.gsc.riken.jp/TFdb/
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
status: Active @en
status: 稼動中

nbdc00702
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-18
source: Integbio Database Catalog
primary topic: THE CANDIDA ALBICANS PHYSICAL MAP WEBSITE

nbdc00702
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-18
source: Integbio Database Catalog
primary topic: THE CANDIDA ALBICANS PHYSICAL MAP WEBSITE

THE CANDIDA ALBICANS PHYSICAL MAP WEBSITE
type: Dataset
title: The Candida Albicans Physical Map Website @en
description: The Candida Albicans Physical Map Website is a portal site about Candida albicans genome and its annotation. It contains a physical map, based on a fosmid library, which was used in conjunction with a new assembly, Assembly 20, based on bioinformatics, to provide completed sequence for most chromosomes. This database contains also Single Nucleotide Polymorphism (SNP) map, based on Assembly 19 of the genome. Users are able to use the Assembly 20 contigs at the Candida Genome Database (CGD). @en
description: カンジダ・アルビカンスの物理地図、SNP地図のデータベースです。
language: en
publisher: University of Minnesota
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://cbs.umn.edu/candida-albicans/home
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5476
theme: T0003
status: Active @en
status: 稼動中

nbdc00703
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Contents Library of Medical Information

The Contents Library of Medical Information
type: Dataset
description: 第一線で診療に当たる医師の修学の機会をインターネットを利用して提供することを目的とし、診断・治療に関する多数のコンテンツが用意されています。
language: ja
publisher: 東北大学
  type: Organization
  address country: 日本
landing page: http://edclom.med.tohoku.ac.jp/to/top.do
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止

nbdc00704
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: The Kidney Development Database

nbdc00704
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Kidney Development Database

The Kidney Development Database
type: Dataset
description: 腎臓の発達に関するデータベースです。発達過程や腎臓の部位等で区別されて、変異やマーカー、遺伝子発現情報を検索することができます。発現データは次のサイトへ移行されています。http://www.gudmap.org/
description: The Kidney Development Database is a resource of experimental information collected from multiple species. The database contains information on markers, mutations, genes, and critical stages in kidney development. @en
language: en
publisher: University of Edinburgh
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10322627
landing page: http://golgi.ana.ed.ac.uk/kidhome.html
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7742
theme: T0001
theme: T0007
status: 休止
status: Inactive @en

nbdc00707
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: The RNA Modification Database

nbdc00707
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: The RNA Modification Database

The RNA Modification Database
type: Dataset
title: The RNA modification database @en
description: The RNA modification database is a integrated database of posttranscriptionally modified nucleosides from RNA. This database contains all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA. The information in this database permits access to the modified nucleoside literature through provision of both computer-searchable Chemical Abstracts registry numbers and key literature citations. Moreover, this database provides an historical record of the initial reports of occurrence, characterization and chemical synthesis of modified nucleosides from RNA. @en
description: 転写後に自然修飾されるRNAに関するデータベースです。古細菌、真正細菌及び真核生物の全RNAからの転写後修飾ヌクレオシドの包括的リストを提供してします。各エントリーには、修飾ヌクレオチドの名称と化学構造、質量、修飾基の名称、化学式、修飾が起きたRNAの種類と生物種と引用文献、構造特性や化学合成に関する引用文献が含まれます。
language: en
publisher: University at Albany
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399834
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7518580
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9016519
landing page: http://mods.rna.albany.edu/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00708
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: The tmRNA Website

nbdc00708
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: The tmRNA Website

The tmRNA Website
type: Dataset
description: tRNAとmRNAの両方の性質を持ち合わせるRNA分子のデータベースです。tmRNAの配列、二次構造、tmRNAによって付加されるタンパク質分解タグ、関連する文献の情報等を提供しています。
description: This is a database of bacterial RNA molecules with properties of both tRNA and mRNA, which described as tmRNA. The site includes information of tmRNA sequences, two-dimensional structures, proteolytic tags added by tmRNA, and relevant publications. @en
language: en
publisher: Indiana University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681369
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752287
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399824
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9847167
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592213
landing page: http://bioinformatics.sandia.gov/tmrna/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0023
status: Active @en
status: 稼動中

nbdc00709
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: The Wnt Homepage

nbdc00709
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Wnt Homepage

The Wnt Homepage
type: Dataset
description: Wnt研究者に向けて、Wnt研究の最新情報、WntおよびWntシグナル経路上の遺伝子やタンパク質の分子情報、シグナルパスウエイマップ、研究方法など、Wntに関する有用な情報を提供しています。
description: The Wnt Homepage is a database of wnt pathway information. The database contains information on wnt genes and proteins and related components of its associated signaling pathways, including sequences, structures, and pathway maps. The database also contains information on wnt pathway involvement in diseases. @en
language: en
publisher: Stanford University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.stanford.edu/group/nusselab/cgi-bin/wnt/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7227
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0026
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00710
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: THz spectral database

nbdc00710
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: THz spectral database

THz spectral database
type: Dataset
description: アミノ酸、ポリマー、農薬、医薬品など164種類の有機材料と、半導体、誘電体を含む18種類の無機材料について、テラヘルツ帯の透過スペクトルを掲載したデータベースです。カーボンナノチューブ、シリコンをはじめとする産業的に重要な材料も多数含まれており、そのテラヘルツ帯での特性を知る手がかりとして活用することができます。本データベースは研究・教育の目的に提供してきたもので、ウェブ上から自由にアクセスでき、テキストファイル、PDFファイル形式によるダウンロードが可能です。 スペクトルデータの利用に関する重要な点は、そのスペクトル形状だけでなく、どのような条件で測定されたかを知ることにあります。例えば、測定時の温度が変わるだけで、スペクトル形状が大きく変化する場合があります。そのため、測定時の温度、試料の厚さ、試料の濃度といった、スペクトルを見る上で必要な測定条件も提供しています。 ユーザーが測定した同様のスペクトルデータの登録も受け付けています。
description: This database of THz spectroscopic measurements of several biologically relevant compounds contains spectra for dozens of compounds, which can be browsed by name. Compound structures and transmittance spectra are available for each entry and results can be downloaded in .txt or .pdf format. @en
language: en
publisher: 国立研究開発法人理化学研究所
  type: Organization
  label: RIKEN @en
  address country: Japan @en
  address country: 日本
landing page: http://www.riken.jp/THzdatabase/index.html
theme: T0012
theme: T0010
theme: T0011
status: Active @en
status: 稼動中

nbdc00711
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TIGRFAMs

nbdc00711
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TIGRFAMs

TIGRFAMs
type: Dataset
description: TIGRFAMs is a database of sequence alignments of protein coding sequences in multiple species. The database contains protein families annotated by sequence similarity using an HMM algorithm. Users can search the database and download released data via FTP. @en
description: 隠れマルコフモデルに基づくタンパクファミリーのデータベースです。手作業でキュレーションしたファミリーが登録されています。キーワードもしくは配列をクエリーとしてファミリーを検索できます。
language: en
publisher: J. Craig Venter Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125044
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520025
distribution: Distribution
  description: RELEASE NOTE 15.0
  rights: COPYRIGHT
  access URL: ftp://ftp.jcvi.org/pub/data/TIGRFAMs/
landing page: http://www.jcvi.org/cgi-bin/tigrfams/index.cgi
theme: T0028
theme: T0007
status: Active @en
status: 稼動中

nbdc00712
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-06-17
source: Integbio Database Catalog
primary topic: TIGR Plant Transcript Assemblies

nbdc00712
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-06-17
source: Integbio Database Catalog
primary topic: TIGR Plant Transcript Assemblies

TIGR Plant Transcript Assemblies
type: Dataset
description: 植物の転写産物データベースです。dbESTやGenBank nucleotide databaseのcDNAを収集しています。全ゲノム配列決定のプロジェクトからの予測転写産物は含んでいません。キーワード検索やBLAST検索、配列のダウンロードが可能です。 オリジナルサイトの運用は終了しました。こちら（http://blast.jcvi.org/euk-blast/plantta_blast.cgi ）に推奨する類似サイトの情報が掲載されています。
description: TIGR Plant Transcript Assemblies is a database of transcript assemblies produced from EST projects. The database includes information on transcripts compiled from NCBI and UniProt databases which can be queried by identifier, accession, or BLAST. Transcript assemblies are available for download. @en
language: en
publisher: J. Craig Venter Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17088284
landing page: http://plantta.jcvi.org/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0002
status: 運用終了
status: Closed @en

nbdc00713
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: TMBETA-GENOME （アーカイブ）

nbdc00713
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: TMBETA-GENOME （アーカイブ）

TMBETA-GENOME （アーカイブ）
type: Dataset
title: TMBETA-GENOME (Archive) @en
alternative: Annotation of Beta-Barrel Membrane Proteins in Genomic Sequences @en
description: This site contains a database of a comprehensive number of bacterial and eukaryotic TMBs (trans beta-barrel membrane proteins) furnished with descriptive and explanatory commentary and including their amino acid sequences. Six ways to locate the appropriate TMB are provided, of which the 'New Approach' appears to be the preferred method. @en
description: TMBETA-GENOMEはゲノム配列が完了している生物種のゲノム中に含まれるβ-バレル型膜タンパク質のデータベースです。各ゲノム配列に対して、機械学習と統計手法を用いた計算が実行され、それらのアノテーション結果がデータベースに格納されていました。その他、アミノ酸配列を入力してβ-バレル型膜タンパク質の判別解析を行う「TMBETA-DISC」や「TMBETA-SVM」などのツールも提供されていました。 現在、産業技術総合研究所によるオリジナルサイトからのデータ提供は終了していますが、TMBETA-GENOMEのデータベースは引き続き生命科学系データベースアーカイブからご利用いただけます。また、ツールはMEDALSのTMBETA-DISCのページ（http://medals.jp/list/detail/162.html） に情報が掲載されています。
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15531602
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15980447
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16204348
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15833441
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17088282
landing page: https://dbarchive.biosciencedbc.jp/en/tmbeta-genome/desc.html
landing page: https://dbarchive.biosciencedbc.jp/jp/tmbeta-genome/desc.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00714
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-01-26
source: Integbio Database Catalog
primary topic: TMFunction（アーカイブ）

nbdc00714
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-26
source: Integbio Database Catalog
primary topic: TMFunction（アーカイブ）

TMFunction（アーカイブ）
type: Dataset
title: TMFunction (Archive) @en
alternative: Functional Database of Membrane Proteins @en
description: α-ヘリックスおよびβ-バレル膜タンパク質中の機能的に重要な残基についてのデータベースです。タンパク質の基本情報やアミノ酸の修飾、変異情報の他、親和性、解離定数、IC50、活性などの実験値を格納しています。実験データは文献から収集しています。Uniprot、PDB、Pubmedなど様々な公共データベースへのリンクを持ちます。 国立研究開発法人産業技術総合研究所によるオリジナルサイト （http: //tmbeta-genome.cbrc.jp/TMFunction/） の運用は終了しました。TMFunctionのデータは引き続き生命科学系データベースアーカイブよりご利用いただけます。
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18842639
distribution: Distribution
  description: README e.html
  description: README.html
  rights: lic.html
  access URL: http://dbarchive.biosciencedbc.jp/jp/tmfunction/download.html
  access URL: http://dbarchive.biosciencedbc.jp/en/tmfunction/download.html
landing page: http://dbarchive.biosciencedbc.jp/en/tmfunction/desc.html
landing page: http://dbarchive.biosciencedbc.jp/jp/tmfunction/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1717
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/520
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1280
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1491
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/86665
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/27679
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8355
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/37296
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7130
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7957
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9600
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/364106
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/287
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10870
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1045010
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/90371
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/622
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/670
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/210
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9986
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8353
status: Active @en
status: 稼動中

nbdc00715
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-01-18
source: Integbio Database Catalog
primary topic: tmRDB

nbdc00715
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-18
source: Integbio Database Catalog
primary topic: tmRDB

tmRDB
type: Dataset
description: tmRNA（以前は「10S RNA」と呼ばれていた）の配列や構造を収集、提供しているデータベースです。tmRNAは1分子でtRNAとmRNAの両方の性質をあわせ持つRNAです。生物種ごと（アルファベット順／系統発生順）にtmRNAの配列とアノテーションが整理されています。二次構造や三次構造のデータも配信しています。
description: The tmRDB is a database of the structures and functions of the tmRNA (earlier called "10S RNA"). This database provides aligned, annotated and phylogenetically ordered tmRNA sequences. It also provides sequences of tag peptide and tmRNA-associated proteins. The alignments of the tmRNA sequences represent conserved secondary structure elements where each base pair is proven by comparative sequence analysis. Whole sequences are downloadable. @en
language: en
publisher: University of Texas Health Science Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12520048
landing page: http://rth.dk/resources/rnp/tmRDB/tmRDB.html
theme: T0021
theme: T0023
theme: T0022
theme: T0007
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00716
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TOMATO (National BioResource Project)

nbdc00716
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: TOMATO (National BioResource Project)

TOMATO (National BioResource Project)
type: Dataset
description: トマトの野生種に加え、ガンマ線照射、EMS(Ethyl Methanesulfonate)処理による変異体の情報を検索することができ、そのまま分与申し込みが可能です。表現系もまとめられており、変異体の形状にあてはめられています。Plant Ontology情報も付加されています。
description: National BioResource Project Tomato is a database of tomato resources. This database contains a tomato photo gallery and information on EMS mutagenesis lines, gamma irradiation-induced mutant lines, EMS and gamma irradiation-induced mutants and wild type cultivars. Users can search available strains by keywords, growth stages and phenotypes through the TOMATOMA (tomato mutants archive) website. @en
language: ja
language: en
publisher: 筑波大学 遺伝子実験センター
  type: Organization
  label: University of Tsukuba Gene Research Center @en
  address country: Japan @en
  address country: 日本
landing page: http://tomato.nbrp.jp/indexJa.html
landing page: http://tomato.nbrp.jp/indexEn.html
theme: T0016
theme: T0014
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
status: Active @en
status: 稼動中

nbdc00717
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: Swine Linkage Map Viewer

nbdc00717
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: Swine Linkage Map Viewer

Swine Linkage Map Viewer
type: Dataset
description: ブタの連鎖地図です。マイクロサテライトマーカーを配置しています。
description: This is a viewer of Swine Linkage Map. Two linkage map, from NIAI and USDA, were used for the analysis. This site is a part of "Animal Genome Research Program" (http://integbio.jp/dbcatalog/en/record/nbdc00338). @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11167524
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8138161
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10612229
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12648097
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12873213
landing page: http://agp.dna.affrc.go.jp/agp/db/linkage/linkage.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0002
theme: T0003
status: Active @en
status: 稼動中

nbdc00718
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Germline Mutagenesis Database - SB transposon

nbdc00718
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Germline Mutagenesis Database - SB transposon

Germline Mutagenesis Database - SB transposon
type: Dataset
description: Sleeping Beautyトランスポゾンを用いて作製した変異マウスのトランスポゾン挿入部位と変異遺伝子を提示したデータベースです。
description: Germline Mutagenesis Database - SB transposon is a database of mutant mice. The database contains information on transposon insertion sites which have been experimentally verified in a mouse line. A database of mutants is available. @en
language: en
publisher: Ohio State University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16179923
landing page: http://variation.osu.edu/germline/SB_transposon/index.html
theme: T0021
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0005
status: 休止
status: Inactive @en

nbdc00719
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-08-25
source: Integbio Database Catalog
primary topic: Transterm

nbdc00719
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-08-25
source: Integbio Database Catalog
primary topic: Transterm

Transterm
type: Dataset
description: Transterm is a database of gene transcripts and their regulatory elements. The database contains thousands of gene sequences which can be analyzed to understand general properties of transcription and translation, or to search for regulatory sequences. @en
description: mRNA配列と制御エレメントを提供しているデータベースです。Genbankから取得したmRNA配列を、5'非翻訳領域と3'非翻訳領域、翻訳開始領域と翻訳終了領域、完全コード領域に分割し、各エレメントにつき、詳細な解説、部位、結合因子、分類、文献情報など、テキストベースで詳しい情報を提供しています。
language: en
publisher: University of Otago
  type: Organization
  address country: New Zealand @en
  address country: ニュージーランド
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399869
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18984623
landing page: http://crispr.otago.ac.nz/TT/index.php
theme: T0021
theme: T0002
theme: T0030
status: Active @en
status: 稼動中

nbdc00720
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-09-12
source: Integbio Database Catalog
primary topic: tRNADB-CE

nbdc00720
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-09-12
source: Integbio Database Catalog
primary topic: tRNADB-CE

tRNADB-CE
type: Dataset
alternative: tRNA gene database curated manually by experts @en
description: tRNADB-CE is a database of manually curated tRNA gene information. It contains tRNA sequences that have been evaluated experimentally after initial identification by computational algorithms. Entries can be searched by keyword, and a BLAST search tool is available. Bulk download is also available. @en
description: 3種類のtRNA遺伝子予測プログラム（tRNAScan-SE、Aragorn、tRNAfinder）を用いて、塩基配列の解読された原核生物や真核生物のゲノムからtRNA遺伝子の網羅的検索を行い、その結果を収録しています。プログラム間で予測結果が一致しない場合にはエキスパートが手作業で精査しています。生物種ごとにコドン使用頻度とtRNA遺伝子数との関係を閲覧することができ、メジャーisoaccepting tRNAが解読するコドン(適合コドン)やマイナーtRNAが解読するコドン（不適合コドン）を調べることができます。
language: en
publisher: 新潟大学 工学部情報工学科
  type: Organization
  label: Niigata University Faculty of Engineering Department of Information Engineering @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21071414
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18842632
landing page: http://trna.ie.niigata-u.ac.jp
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0001
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00721
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-04-03
source: Integbio Database Catalog
primary topic: Tropical Medicine and Health

nbdc00721
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-04-03
source: Integbio Database Catalog
primary topic: Tropical Medicine and Health

Tropical Medicine and Health
type: Dataset
description: 日本熱帯医学会では熱帯医学分野の学術的研究成果を学術誌「Tropical Medicine and Health」にて発表、掲載しています。本誌は熱帯地を中心とした海外における医療、研究、教育のそれぞれの活動のオピニオン誌として、熱帯病および熱帯医学に関するあらゆる情報を発信しています。このサイトでは「Tropical Medicine and Health」に掲載されている文献の検索が可能です。抄録と本文のPDFを配布しています。
description: Tropical Medicine and Health is a database of journals published by Japanese Society of Tropical Medicine. This database allows to search journals which about a tropical disease and tropical medicine as an opinion journal of the medical treatment, research, and educational activities at overseas. Abstracts and full text of articles are distributed on PDF. @en
language: ja
language: en
publisher: 国立研究開発法人科学技術振興機構
  type: Organization
  label: Japan Science and Technology Agency @en
  address country: Japan @en
  address country: 日本
landing page: https://www.jstage.jst.go.jp/browse/tmh/-char/ja/
landing page: https://www.jstage.jst.go.jp/browse/tmh
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00722
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-01-09
source: Integbio Database Catalog
primary topic: HSG Database

nbdc00722
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-09
source: Integbio Database Catalog
primary topic: HSG Database

HSG Database
type: Dataset
alternative: Two-Dimensional Electrophoresis Database of HSG cells proteins
description: The HSG Database is a resource of information on human salivary gland proteins. The site contains data generated from studies of an irradiated human salivary intercalated duct cell line. The proteins represented in the database have been characterized by 2D gel electrophoresis and further identified by MALDI-TOF. Images of the analyzed 2D gels and the annotated spots are available. @en
description: HSG (Human salivary intercalated duct cell line, ヒト唾液腺に放射線照射して確立した細胞株) 中のタンパク質を2次元ゲル電気泳動で展開した結果を掲載しています。各スポットは、MALDI-TOFもしくはシーケンサーで解析し、ペプチドを同定しています。
language: en
publisher: 岩手医科大学 歯学部
  type: Organization
  label: Iwate Medical University School of Dentistry @en
  address country: Japan @en
  address country: 日本
landing page: http://cellbiosignal.jp/biochem/kamo/
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00723
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-28
source: Integbio Database Catalog
primary topic: UgMicroSatdb

nbdc00723
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-28
source: Integbio Database Catalog
primary topic: UgMicroSatdb

UgMicroSatdb
type: Dataset
alternative: Unigene MicroSatellite database
description: UgMicroSatdb is a database of DNA microsatellites. The database contains entries for dozens of species from bacteria to mammals, categorized by Linnean classification. Users can select the species of interest then explore microsatellites in that species using several different search options and parameters. A tutorial introducing site use is also available. @en
description: Unigeneの80種のゲノム配列中のマイクロサテライトを検索するためのデータベースです。様々な検索パラメータが用意されており、検索結果として、マイクロサテライトの型、長さ、繰り返し数、配列、配列のアノテーションが表示されます。このデータベースでは、アミノ酸をコードする3塩基（コドン）の繰り返し領域の情報も提供しています。
language: en
publisher: Guru Gobind Singh Indraprastha University/University School of Biotechnology
  type: Organization
  address country: India @en
  address country: インド
landing page: http://www.veenuash.info/veenu/index.asp
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0003
status: 休止
status: Inactive @en

nbdc00724
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-12-12
source: Integbio Database Catalog
primary topic: UK CROPNET

nbdc00724
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: UK CROPNET

UK CROPNET
type: Dataset
alternative: UK Crop Plant Bioinformatics Network @en
description: UK Crop Plant Bioinformatics Network (UK CropNet) で開発した作物ゲノムのデータベースや解析ソフトウェア、米国で開発された植物データベースを保守、管理しています。キーワードテキスト検索により、これらのデータベースを横串検索できます。UK CropNet BLAST serverでは、これらのデータベースに格納されている配列に対してブラスト検索を行えます。 UK CropNetコンソーシアムによるUK CROPNETの運用は終了しました。連絡先のメールアドレスが、UK CropNetのサイト （http://ukcrop.net） に記載されています。
language: en
publisher: UK CropNetコンソーシアム
  type: Organization
  label: UK CropNet Consortium @en
  address country: United Kingdom @en
  address country: イギリス
landing page: http://ukcrop.net/
theme: T0031
theme: T0001
status: 運用終了
status: Closed @en

nbdc00725
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: EAWAG-BBD

nbdc00725
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: EAWAG-BBD

EAWAG-BBD
type: Dataset
alternative: University of Minnesota Biocatalysis/Biodegradation Database @en
description: EAWAG-BBD is a database about information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. Each entry is presented with information on the starting and intermediate chemical compounds, the organisms that transform the compounds, the enzymes, and the genes. Users are able to search this database for compound, enzyme, microorganism, pathway, or BT rule name; chemical formula; chemical structure; CAS Registry Number; or EC code. This database is being expanded primarily with the help of advanced undergraduate and graduate students. @en
description: 微生物の生体触媒反応と生分解パスウエイのデータベースです。登録されている化学反応は、自然科学の基礎研究や、化学薬品製造の生体触媒反応、環境汚染物質の生分解の研究向けとなっており、各反応には、開始化合物と中間化合物の情報と、反応を起こす生物や酵素、遺伝子の情報が付与されています。現在510種の微生物のパスウエイが登録されています。
language: en
publisher: University of Minnesota
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19767608
landing page: http://eawag-bbd.ethz.ch/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0023
theme: T0010
theme: T0026
theme: T0001
theme: T0007
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0029
status: Active @en
status: 稼動中

nbdc00726
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: UniVec

nbdc00726
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: UniVec

UniVec
type: Dataset
description: 冗長のないベクター配列のデータベースで、NCBIのFTPサイトで配布されています。ベクターの他、アダプター、リンカー、プライマーの配列も登録されています。VecScreenを用いることにより、入力核酸配列中に存在するベクター由来の配列セグメントを簡単に同定することができます。
description: UniVec is a database for the identification of vector contamination in sequencing projects. The database contains common vector sequences as well as tools for recognizing and purifying sequence reads of vector contamination. Information is represented in a drastically reduced non-redundant format to minimize computational intensity and complexity. UniVec can be downloaded via FTP. @en
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: README.uv
  rights: README.uv
  access URL: ftp://ftp.ncbi.nlm.nih.gov/pub/UniVec/
landing page: http://www.ncbi.nlm.nih.gov/VecScreen/UniVec.html#Overview
theme: T0021
theme: T0005
status: Active @en
status: 稼動中

nbdc00727
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: UNKA (BPH) EST

nbdc00727
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: UNKA (BPH) EST

UNKA (BPH) EST
type: Dataset
description: This database contains cDNA (EST) information for the brown planthopper (BPH, Nilaparvata lugens). EST annotations and clustering information can be viewed through keyword searches. @en
description: トビイロウンカのcDNA(EST)情報が格納されたデータベースです。 キーワード等の検索により、ESTの注釈(アノテーション)やクラスタリング情報を参照できます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://bphest.dna.affrc.go.jp/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/108931
theme: T0002
status: Active @en
status: 稼動中

nbdc00728
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: UR-DBMS/Syndrome Finder

UR-DBMS/Syndrome Finder
type: Dataset
description: 琉球大学医学部医科遺伝学（遺伝医学）により作成された奇形症候群を中心とする遺伝性疾患の総合データベースです。「UR-DBMS」は、奇形症候群や染色体異常を中心とし、遺伝性疾患全般を含む遺伝性疾患総合データベースです。各疾患について、症状（写真入り）や責任遺伝子、診断、発生機序、文献情報等がテキストベースで詳細にまとめられています。「Syndrome Finder」はUR-DBMSの症状データから診断候補を検索するソフトウェアです。こちらは医師専用で、利用の際にはユーザ登録が必要です。
language: ja
publisher: 琉球大学 大学院
  type: Organization
  address country: 日本
landing page: http://becomerich.lab.u-ryukyu.ac.jp/
theme: T0015
theme: T0029
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00729
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-16
source: Integbio Database Catalog
primary topic: UTGB

nbdc00729
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: UTGB

UTGB
type: Dataset
description: This site provides access to the Saccharomyces database. Users can browse or search by chromosome, gene, and ORF. Results can be obtained in FASTA format. The original site has been closed. The raw data can be downloaded from LSDB Archive site ( http://dbarchive.biosciencedbc.jp/en/yeast-cdna/desc.html ). @en
description: UTGBは、酵母に関して遺伝子名（Gene symbol）やORF name、chromosome numberから検索し、ゲノムブラウザ上で閲覧することができるサイトです。 東京大学によるオリジナルのゲノムブラウザサイトUTGB （http: //yeast.utgenome.org/） の運用は終了しました。オリジナルサイト （ http://yeast.utgenome.org/ ） に、Raw dataは生命科学系データベースアーカイブ（ http://dbarchive.biosciencedbc.jp/jp/yeast-cdna/desc.html ）から、データのブラウズはSaccharomyces Genome Database （SGD: http://browse.yeastgenome.org/fgb2/gbrowse/scgenome/ ） から利用可能である旨が記載されています。
language: en
publisher: 東京大学大学院 理学系研究科
  type: Organization
  label: The University of Tokyo Graduate School of Science @en
  address country: Japan @en
  address country: 日本
landing page: http://yeast.utgenome.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0021
theme: T0001
status: 運用終了
status: Closed @en

nbdc00730
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: UTRdb

nbdc00730
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: UTRdb

UTRdb
type: Dataset
description: UTRdb is a database of untranslated region sequences and other information related to the regulation of genes by way of 5' and 3' UTRs. The database contains sequence information for hundreds of thousands of genes in dozens of species, and a second, more comprehensive resource specifically dedicated to human UTRs. Tools for analyzing UTRs and bulk data downloads are available. @en
description: 真核生物mRNAの5'および3'非翻訳領域は、mRNAの細胞質輸送や翻訳効率、局在や安定性の機能に関わることで遺伝子発現を制御する役割があります。UTRdbは真核生物mRNAの5'および3'非翻訳領域に関するキュレートデータベースです。実験で実証された機能性モチーフ、miRNAターゲットと保存配列エレメントはアノテーションが付与され、UTRsiteデータベースとリンクしています。各エントリーは遺伝子を基本としており、選択的スプライシングなどによる5'および3'非翻訳領域の変異体も網羅するように視覚化されています。UTRdbは、UTRefとUTRfullの2つのサブデータベースが含まれています。 UTRefには、79生物種の遺伝子483,605件について、473,330件の5'UTR と527,323件の3'UTRが登録されています。 UTRfullは、ヒトに特化したデータベースで、ASPicDB由来の全長転写産物のUTRが含まれています。124,345件の5'UTR（3.37件/遺伝子）と194,503件（5.18件/遺伝子）の3'UTRが登録されています。
language: en
publisher: Institute for Biomedical Technologies
  type: Organization
  address country: イタリア
  address country: Italy @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608165
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19880380
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592223
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11897027
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11591473
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752330
distribution: Distribution
  access URL: http://utrdb.ba.itb.cnr.it/advdownload
  access URL: http://utrdb.ba.itb.cnr.it/home/download
landing page: http://utrdb.ba.itb.cnr.it/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
status: Active @en
status: 稼動中

nbdc00731
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: VarySysDB

nbdc00731
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: VarySysDB

VarySysDB
type: Dataset
description: This site contains three systems that can be searched. The Genome Browser combines a database of available genome annotations with an interactive web page. The LD Search System facilitates searches for bins of alleles of linked loci showing a tendency to co-occur nonrandomly on chromosomal haplotypes. Varygene 2 contains a list of various types of polymorphisms, repeats, variations in structure and how these findings relate to the genome, its transcripts and function. @en
description: H-Inv転写産物のアノテーションに基づいたヒト多型情報を提供しています。転写領域やスプライス・サイト上の一塩基多型(SNPs)、挿入欠失多型(DIPs)、縦列型反復配列(STRs)、単一アミノ酸反復配列(SARs)、構造多型(コピー数多型、CNV)について、それぞれH-InvDBの転写産物と機能ドメインに関連づけて公開しています。多型のタイプごと、転写産物ごとに情報を検索したり、検索結果をダウンロードすることが可能です。
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18953038
landing page: http://h-invitational.jp/varygene/home.htm
landing page: http://www.h-invitational.jp/varygene/home.htm
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00732
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: VectorDB

nbdc00732
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: VectorDB

VectorDB
type: Dataset
description: Vector DB is a database of genetic constructs used in molecular biology. The database contains sequences of hundreds of vectors which can be browsed by type. Search function is currently unavailable. @en
description: 分子生物学分野で一般的に使用されている2,600以上のベクターの配列情報とアノテーションを収録しています。対象としているベクターの種類は、Pharge Vector、Plasmid Vector、Phagemid Vector、Phasmid Vector、Cosmid Vector、Virus Vector、YAC Vector です。
language: en
publisher: Stanford University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://genome-www.stanford.edu/vectordb//
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0005
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00733
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-02
source: Integbio Database Catalog
primary topic: Viral Probe Database

nbdc00733
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-02
source: Integbio Database Catalog
primary topic: Viral Probe Database

Viral Probe Database
type: Dataset
description: ウイルス検出方法の殆どは、特定のウイルスや良く知られている少数のウイルスのみを対象としていたり、感染力の強い新興ウイルスをカバーできないという欠点があります。そこで我々は保存配列プローブを用いて新興ウイルスや配列決定されていないウイルスを属のレベルで分類できる計算手法と、既知ウイルスを同定するための特異的プローブを開発しました。 27,610のウイルスゲノム配列(GenBank viral database (Release 152))を用いて決定した、5,700以上のウイルスに対応する属および種特異的なプローブをデータベースで提供しています。
description: Viral Probe is a list that contains a vast number of viral probes identified experimentally in the sequences of a comprehensive number of viruses. The sequences of each probe identified in each species of each genus of the virus families studied are available for browsing and download. A search option does not appear to be available, other than browsing the list and searching for the necessary species and/or probe identification name or number. @en
language: en
publisher: Academia Sinica
  type: Organization
  address country: 台湾（台湾省/中華民国）
  address country: Taiwan, Province of China @en
landing page: http://genestamp.sinica.edu.tw/virus/viralProbe.htm
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0027
theme: T0005
theme: T0006
theme: T0018
status: 休止
status: Inactive @en

nbdc00734
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: VISTA Enhancer Browser

nbdc00734
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: VISTA Enhancer Browser

VISTA Enhancer Browser
type: Dataset
description: 転写エンハンサー活性を持つヒトとマウスの非コード領域を収録しています。エンハンサー活性はトランスジェニックマウスを用いた実験で検証されています。各エントリーには、配列上の位置、胚における発現パターンと画像、塩基配列、プライマー情報が含まれています。
description: VISTA Enhancer Browser is a database of mammalian gene enhancers. The database contains information on human and mouse enhancer elements validated in transgenic mice. Data can be can be browsed by element and location, or searched by expression pattern or gene region. Enhancer sequences are available for download. @en
language: en
publisher: Lawrence Berkeley National Laboratory
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17130149
distribution: Distribution
  access URL: http://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=search&show=1&search.form=no&search.result=yes
landing page: http://enhancer.lbl.gov/
theme: T0021
theme: T0024
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0005
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00735
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: WHO/TDR MALARIA Database

nbdc00735
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: WHO/TDR MALARIA Database

WHO/TDR MALARIA Database
type: Dataset
description: マラリア原虫に関する遺伝子情報やタンパク情報が掲載されています。外部リンクとして代謝マップへのリンクも閲覧することができます。ESTや制限酵素での切断情報、マラリア原虫の種類についての情報も掲載されています。
language: en
publisher: Walter and Eliza Hall Institute of Medical Research
  type: Organization
  address country: Australia @en
  address country: オーストラリア
landing page: http://www.wehi.edu.au/other_domains/MalDB/who.html
theme: T0014
theme: T0024
theme: T0026
theme: T0007
theme: T0006
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5833
theme: T0021
theme: T0030
status: 休止
status: Inactive @en

nbdc00736
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: WhoGA

nbdc00736
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: WhoGA

WhoGA
type: Dataset
alternative: Whole Genome Annotation
description: イネゲノム研究プログラム(RPG)では、日本型イネ「日本晴」全塩基配列解析の配列 Build04 を利用し、全染色体のマニュアルアノテーションを行いました。WhoGA ではこれらアノテーション結果をゲノムブラウザ「Gbrowse」にて簡単に閲覧する事が出来ます。 WhoGAは2013年3月31日をもって停止いたしました。 今後はRAP-DB (http://integbio.jp/dbcatalog/record/nbdc00182) をご利用いただきますよう、よろしくお願いいたします。
language: ja
language: en
publisher: 独立行政法人農業生物資源研究所
  type: Organization
  label: National Institute of Agrobiological Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://rgp.dna.affrc.go.jp/whoga/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0001
theme: T0002
status: 運用終了
status: Closed @en

nbdc00737
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-22
source: Integbio Database Catalog
primary topic: WINGpro

WINGpro
type: Dataset
description: ライフサイエンス分野のデータベースについての情報が収集、整理、分類されており、現在のところ約417件の記事が存在します。ディレクトリからは、データベースの構築法による分類と生物種および対象による分類でデータベースを一覧できます。 2007年7月2日より、ユーザである皆様が記事を投稿および編集できる機能を公開しました。新規データベースに関する記事の投稿、既登録データベース関しても利用方法やTipsに関する追記をしていただけます。 2013年7月29日をもって運用を終了しました。WINGproに掲載されていたデータベースはIntegbioデータベースカタログ (http://integbio.jp/dbcatalog/record/nbdc00001) に収録されていますので今後はこちらをご利用ください。
language: ja
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  address country: 日本
landing page: http://wingpro.biosciencedbc.jp/dbpwiki/index.php/メインページ
theme: T0030
status: 運用終了

nbdc00738
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: WORFDB

nbdc00738
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: WORFDB

WORFDB
type: Dataset
alternative: Worm ORFeome Database
description: WORFDB is a database of C. elegans open reading frame information. The database contains data from ORF projects, which can be searched by keyword or BLAST, as well as data from RACE experiments to verify predicted genes. A database of promoters is also available. @en
description: 線虫の約19,000の全タンパク質コード予測領域ORF(worm ORFeome)に関するデータベースです。キーワード検索、BLAST検索が検索が可能です。
language: en
publisher: Harvard Medical School
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11242119
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12679813
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12519990
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15489327
landing page: http://worfdb.dfci.harvard.edu
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: T0002
status: Active @en
status: 稼動中

nbdc00739
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: World-2DPAGE Repository

nbdc00739
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-08
source: Integbio Database Catalog
primary topic: World-2DPAGE Repository

World-2DPAGE Repository
type: Dataset
alternative: World-Two-dimensional polyacrylamide gel electrophoresis database
description: World-2DPAGE is a database of proteomic reference resources. The database collects information on 2D-PAGE studies from published literature. Users can access a list of included databases or search by several identifiers. @en
description: 論文で報告された二次元ポリアクリルアミドゲル電気泳動イメージデータを蓄積している世界的なデータベースです。各マップにつき、ゲル実験情報、生物種、同定スポット数、同定タンパク質数、ゲルの写真と同定スポット、同定したタンパク質のリストが表示されます。
language: en
publisher: Swiss Institute of Bioinformatics
  type: Organization
  address country: スイス
  address country: Switzerland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18617148
landing page: http://world-2dpage.expasy.org/repository/
theme: T0029
theme: T0007
status: Active @en
status: 稼動中

nbdc00740
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: WormBase

nbdc00740
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: WormBase

WormBase
type: Dataset
description: WormBase is a database of information on nematodes and other worms. The database contains extensive information on a number of species including genome sequences, genes, gene expression, proteins, and phenotypes. Users can search by keyword, BLAST, or BLAT, and create user accounts to save searches and other useful information. @en
description: 線虫ゲノム研究の統合サイトです。ゲノム情報の他に、遺伝子、多型、遺伝マーカー、変異株等の情報を提供しています。データの登録も可能です。
language: en
publisher: Ontario Institute For Cancer Research
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19910365
distribution: Distribution
  rights: http://www.wormbase.org/about/policies#2--10
  access URL: ftp://ftp.wormbase.org/pub/wormbase/
landing page: http://www.wormbase.org
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/31234
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6305
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6238
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/135651
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6306
theme: T0002
theme: T0003
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6279
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/54126
theme: T0029
theme: T0019
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/281687
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00741
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: Xanthobase

nbdc00741
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: Xanthobase

Xanthobase
type: Dataset
alternative: Xanthomonas oryzae pv. oryzae genome database
description: イネ白葉枯病菌のゲノム情報を格納したデータベースです。 グラフィカルなビューアによる遺伝子のゲノム位置や注釈 (アノテーション)情報が参照できます。 またお手持ちの配列と白葉枯病菌のゲノム・遺伝子配列との類似性検索も行えます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://microbe.dna.affrc.go.jp/Xanthomonas/
theme: T0021
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/64187
theme: T0001
theme: T0007
status: 運用終了
status: Closed @en

nbdc00742
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Yeast Interacting Proteins Database

nbdc00742
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Yeast Interacting Proteins Database

Yeast Interacting Proteins Database
type: Dataset
description: The Yeast Interacting Proteins Database is a database of binary protein interactions detected by a yeast two-hybrid screen. The database contains downloadable data for all interactions or a subset of repeatedly observed interactions. @en
description: 出芽酵母タンパク質に対する網羅的酵母２ハイブリッド解析によって得られた相互作用およびそれに関する付随する情報をデータベース化したものです。
language: en
publisher: 東京大学 大学院理学系研究科 生物化学専攻
  type: Organization
  label: The University of Tokyo Graduate School of Science Department of Biophysics and Biochemistry @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10655498
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11283351
landing page: http://itolab.cb.k.u-tokyo.ac.jp/Y2H/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0026
theme: T0007
status: Active @en
status: 稼動中

nbdc00743
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: UMASS Amherst Yeast snoRNA Database

nbdc00743
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: UMASS Amherst Yeast snoRNA Database

UMASS Amherst Yeast snoRNA Database
type: Dataset
description: 出芽酵母のsnoRNA（核小体低分子RNA）の分子情報を収集、整理したデータベースです。各エントリーには、名前、配列長、生体内プロセス、標的サイト、染色体マップによる位置情報、遺伝子破壊による表現型、オーソログ、RNA配列、文献情報などが含まれています。
description: The yeast snoRNA database is a comprehensive database for small nucleolar RNAs (snoRNAs) from the yeast Saccharomyces cerevisiae. It allows to visualize the positions of pseudouridines, 2'-O-methylations, and base methylations in three-dimensional space in the ribosome and also in linear and secondary structure formats of ribosomal RNA. It provides additional perspective on where the modifications occur relative to functional regions within the rRNA and relative to other nearby modifications. The database also includes details of the base pairing of snoRNAs with target RNAs, genomic organization of the yeast snoRNA genes, and information on corresponding snoRNAs and modifications in other model organisms. @en
language: en
publisher: University of Massachusetts Amherst
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17283215
landing page: http://people.biochem.umass.edu/fournierlab/snornadb/main.php
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0016
theme: T0021
theme: T0028
theme: T0006
status: Active @en
status: 稼動中

nbdc00744
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: yMGV

nbdc00744
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: yMGV

yMGV
type: Dataset
alternative: Yeast Microarray Global Viewer @en
description: 公開されている酵母の遺伝子発現データセットを収録し、遺伝子間の発現プロファイルをグラフィカル表示するためのビューワを提供しているデータベースです。様々な条件でデータの絞り込みを行えます。
description: yMGV is a database of yeast gene expression information collected by microarray. The database contains information from hundreds of experiments collected from published literature. Users can browse and analyze datasets by single gene, a gene list, common response, or compendia of related studies. Several additional tools are also provided to explore the data. @en
language: en
publisher: Ecole normale superieure
  type: Organization
  address country: France @en
  address country: フランス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752259
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11433039
landing page: http://www.transcriptome.ens.fr/ymgv
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4896
theme: T0002
status: 休止
status: Inactive @en

nbdc00745
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: National BioResource Project Zebrafish

nbdc00745
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: National BioResource Project Zebrafish

National BioResource Project Zebrafish
type: Dataset
description: National BioResource Project Zebrafish is a database for preservation and distribution of zebrafish strains. The resource list consists of transgenic, mutant and wild strains maintained by RIKEN Brain Science Institute, National Institute of genetics and National Institutes of Natural Sciences. Each entry consists of 12 items such as the allele, the strain name and genotype. Some entries contain photo data. Users can search available resources by strain types and facilities, as well as keywords from these items. @en
description: ゼブラフィッシュの分与可能な系統に関する情報を掲載しており、分与、寄託などの情報に関しても掲載されています。トランスジェニック、変異体、野生由来のゼブラフィッシュが自然科学研究機構、国立遺伝学研究所、理化学研究所の協力により分与体制ができています。
language: ja
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
landing page: http://www.shigen.nig.ac.jp/zebra/index_en.html
landing page: http://www.shigen.nig.ac.jp/zebra/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0017
status: Active @en
status: 稼動中

nbdc00746
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ZFIN

nbdc00746
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ZFIN

ZFIN
type: Dataset
alternative: The Zebrafish Model Organism Database @en
description: ZFIN is a central repository and web-based resource for zebrafish genetics and development. This database contains manually curated data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, anatomical structures and publications from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. The database also contains a wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. ZFIN works closely with ZIRC to connect their genetic data with available probes and fish lines. @en
description: 実験情報から研究コミュニティーの情報まで、ゼブラフィッシュに関するすべての知識と情報を入手することができます。研究リソースの配布も行っています。
language: en
publisher: University of Oregon/Zebrafish Information Network
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10354586
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21036866
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11125057
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9441953
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9891346
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17991680
distribution: Distribution
  description: downloads
  rights: warranty.html
  access URL: http://zfin.org/downloads
landing page: http://zfin.org/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0024
theme: T0001
theme: T0007
theme: T0002
theme: T0003
theme: T0021
theme: T0019
theme: T0017
theme: T0030
status: Active @en
status: 稼動中

nbdc00747
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: zTRAP

nbdc00747
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: zTRAP

zTRAP
type: Dataset
alternative: Zebrafish Gene Trap and Enhancer Trap Database @en
description: This is a database of the Koichi Kawakami Laboratory of the National Institute of genetics (NIG). It contains information of the Zebrafish. The data is gathered by use of the method of gene trapping, which involves inserting mutations into the genome, and by the application of an enhancer trap, a transgenic construction for the identification of enhancers. Enhancers are produced by the fusing of two proteins, for which genes are then inserted into the genome. An advanced search option is available. @en
description: 国立遺伝学研究所で提供しているトランスポゾン転移技術をもとにしたトランスジェニックゼブラフィッシュにおいては、さまざまな細胞、組織、器官を特異的にGFPで光らせることができます。本サイトでは、約800のトランスジェニックゼブラフィッシュについて、各器官や組織においてGFPが発現している画像を検索することが可能です。
language: en
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  label: Research Organization of Information and Systems National Institute of Genetics @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15693946
landing page: http://kawakami.lab.nig.ac.jp/ztrap/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0024
theme: T0025
theme: T0029
theme: T0001
theme: T0005
status: Active @en
status: 稼動中

nbdc00748
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: アトピー性皮膚炎 よりよい治療のためのEvidence-based medicine (EBM)とデータ集

アトピー性皮膚炎 よりよい治療のためのEvidence-based medicine (EBM)とデータ集
type: Dataset
description: アトピー性皮膚炎に関するあらゆる情報をまとめたデータ集です。研究者、治療方法、薬剤情報などが収録されています。
language: ja
publisher: 九州大学 医学部
  type: Organization
  address country: 日本
landing page: http://www.kyudai-derm.org/atopy_ebm/index.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00749
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-08
source: Integbio Database Catalog
primary topic: イネタンパク質構造データベース

イネタンパク質構造データベース
type: Dataset
alternative: RPSD
description: イネなど7種類の植物のタンパク質の立体構造を収集したデータベースです。Protein Data Bankを情報源とし、タンパク質の基本情報、構造決定に用いた実験手法、文献情報、配列、立体構造の画像等を掲載しています。 国立研究開発法人 農業生物資源研究所によるオリジナルサイト (http ://structure.rice.dna.affrc.go.jp/plant/index.html) の運用は終了しました。RPSDのデータは引き続き生命科学系データベースアーカイブからご利用いただけます。
language: ja
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  address country: 日本
landing page: http://dbarchive.biosciencedbc.jp/jp/rpsd/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4513
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4577
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4558
theme: T0022
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4565
status: 稼動中

nbdc00750
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: イネ品種・特性データベース検索システム

イネ品種・特性データベース検索システム
type: Dataset
description: イネの品種情報と特性を収録したデータベースです。各品種につき、育成地、系統番号、交配組合せ、登録年、作付面積と全国の順位、普及見込み地帯、来歴、形態的特性、生態的特性、配布種子量、栽培適地、栽培上の注意等が詳細に掲載されています。 検索方法には、「品種名検索」、「特性情報検索」、「作付面積検索」、「登録特性検索」の4種類が用意されています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 作物研究所
  type: Organization
  address country: 日本
landing page: http://ineweb.narcc.affrc.go.jp
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0014
status: 稼動中

nbdc00751
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: ゲノムネット医薬品データベース

ゲノムネット医薬品データベース
type: Dataset
description: JAPIC 医薬品添付文書情報 (医療用及び一般用) を KEGG にある様々な情報と統合したデータベースです。研究の最先端と医療の現場さらには一般社会とをつなぐことを目指しています。キーワード検索により、医療用医薬品と一般用医薬品の一括検索または個別検索ができます。 現在はKEGG MEDICUS ( http://integbio.jp/dbcatalog/record/nbdc01185 )に統合されています。
language: ja
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  address country: 日本
landing page: http://www.genome.jp/kusuri/
theme: T0015
theme: T0012
theme: T0019
theme: T0030
status: 運用終了

nbdc00752
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-02-06
source: Integbio Database Catalog
primary topic: コケ類コレクション

コケ類コレクション
type: Dataset
description: 国立科学博物館植物研究部に収蔵されているコケ類のタイプ標本について、「コケ植物標本インデックス」、「コケ植物図インデックス」にて紹介しています。
language: ja
publisher: 国立科学博物館
  type: Organization
  address country: 日本
landing page: http://www.kahaku.go.jp/research/db/botany/koke/
theme: T0014
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3208
status: 稼動中

nbdc00753
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: S-Net

S-Net
type: Dataset
alternative: サイエンスミュージアムネット (S-Net)
description: サイエンスミュージアムネットは、全国の科学系博物館の展示情報や教育普及活動、自然史系の標本に関する情報を横断的に検索できるポータルサイトです。一般の方や研究者の方にご利用いただけます。全国の科学系博物館の協力の基に国立科学博物館が運営しています。
language: ja
publisher: 国立科学博物館
  type: Organization
  address country: 日本
landing page: http://science-net.kahaku.go.jp/
theme: T0014
theme: T0031
theme: T0027
status: 稼動中

nbdc00754
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-02-06
source: Integbio Database Catalog
primary topic: 魚類写真資料データベース

魚類写真資料データベース
type: Dataset
description: 本データベースは魚類の生態写真や標本写真から構成されています。 本データベースは神奈川県立生命の星・地球博物館の魚類写真資料データベースに登録されている画像に基づいて構築されています。データの検索機能は同博物館と国立科学博物館との共同開発です。閲覧やダウンロードした画像の個人的な利用を除き、資料の利用に際しては神奈川県立生命の星・地球博物館および国立科学博物館の許可が必要です。個々の写真の著作権は撮影者に属します。
language: ja
publisher: 国立科学博物館
  type: Organization
  address country: 日本
landing page: http://www.kahaku.go.jp/research/db/zoology/photoDB/
theme: T0014
theme: T0029
status: 稼動中

nbdc00755
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Database for Genes Contributing to Sustainable World (持続可能型社会への貢献遺伝子データベース)

Database for Genes Contributing to Sustainable World (持続可能型社会への貢献遺伝子データベース)
type: Dataset
description: 自然環境の浄化や保全に役立つ、広い意味では「持続可能型社会の実現に貢献できる可能性を持つ遺伝子」を想定して、世界で進行している環境生物試料に関する大規模シークエンシング（メタゲノム解析）で得られた大量な塩基配列を対象に、公的データベースにおいて未だ機能が特定されていない500万件以上の遺伝子候補に着目して、想定した遺伝子の探索を試みています。
language: ja
publisher: 長浜バイオ大学
  type: Organization
  address country: 日本
landing page: http://dbcls.nagahama-i-bio.ac.jp/xoops/modules/pukiwiki/
theme: T0020
theme: T0001
theme: T0030
status: 稼動中

nbdc00756
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 植物細菌病の診断と病原細菌の同定に関する情報

植物細菌病の診断と病原細菌の同定に関する情報
type: Dataset
description: 日本で発生する植物細菌病の図鑑です。病徴で病名を判断するための写真や解説、菌種を簡易同定する方法が紹介されています。
language: ja
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  address country: 日本
landing page: http://www.niaes.affrc.go.jp/bact/Ent.html
theme: T0014
theme: T0015
theme: T0029
theme: T0030
status: 稼動中

nbdc00757
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: 食品害虫サイト (貯穀害虫・天敵図鑑)

食品害虫サイト (貯穀害虫・天敵図鑑)
type: Dataset
description: 貯蔵食品中で生育する昆虫とその天敵情報を格納したデータベースです。 昆虫の形や名称、食品の種類から検索することができ、形態・加害食品・防除方法等の情報を参照できます。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 食品総合研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/org/nfri/yakudachi/gaichu/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/50557
theme: T0029
theme: T0030
status: 稼動中

nbdc00758
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 線虫の感覚神経に発現する遺伝子の検索結果データベース

線虫の感覚神経に発現する遺伝子の検索結果データベース
type: Dataset
description: mRNA-tagging methodによる線虫（Caenorhabditis elegans）の感覚神経に発現する遺伝子について研究を行った成果を閲覧できます。
language: ja
publisher: 東京大学 大学院
  type: Organization
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15693946
landing page: http://molecular-ethology.biochem.s.u-tokyo.ac.jp/microarray/
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: T0002
status: 休止

nbdc00759
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-01
source: Integbio Database Catalog
primary topic: 化合物バンク （NPDepo）

化合物バンク （NPDepo）
type: Dataset
description: 理化学研究所・長田抗生物質研究室では、研究室内外で合成された化合物や、放線菌の二次代謝産物をはじめとする天然物の収集・保管、機器分析スペクトルなどをデータベース化し、これらを提供するシステムの構築を行っています。 登録されている化合物は企業や研究所・大学、理化学研究所から寄託されている約24,700件（2009年1月現在)で、その内訳は合成化合物約9,100件、合成ペプチド約7,600件、天然化合物約5,200件、天然化合物約2,800件となっています。利用には利用者登録が必要です。
language: ja
publisher: 国立研究開発法人理化学研究所
  type: Organization
  address country: 日本
landing page: http://www.cbrg.riken.jp/npd/
theme: T0023
theme: T0010
theme: T0017
theme: T0018
theme: T0011
status: 稼動中

nbdc00760
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 統合がんゲノムデータベース

nbdc00760
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 統合がんゲノムデータベース

統合がんゲノムデータベース
type: Dataset
title: Integrated Cancer Genome Database @en
description: This database stores genotype frequencies of SNPs, which have been genotyped to identify genes responsible for drug sensitivity and side effects to anti-cancer drugs, and their relation with drug sensitivity and side effects. In this project, approximately 3,000 SNPs in candidate genes of breast cancer patients have been genotyped by the Invader method, and are stored in this database. The candidate genes include 512 genes related to pharmacokinetics, DNA repair, apoptosis, cell cycle control, angiogenesis, and inflammation. The database provides genotype frequencies of these SNPs that can be downloaded. @en
description: 財団法人癌研究会ゲノムセンターでは、抗がん剤の治療感受性や副作用を規定する遺伝子の同定を効率的に行うための知的基盤を整備するため、 がん患者の一塩基多型（SNP）のジェノタイプ頻度と、薬剤応答性や副作用の情報を統合した「統合がんゲノムデータベース」 を公開しています。SNPのジェノタイプ頻度情報はダウンロード可能です。
language: ja
publisher: 公益財団法人がん研究会
  type: Organization
  label: Japanese Foundation for Cancer Research @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  access URL: http://scads.jfcr.or.jp/db/cs/index_j.html
landing page: http://genomecenter.jfcr.or.jp/genomedb/
theme: T0021
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
theme: T0030
status: Active @en
status: 稼動中

nbdc00761
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 日本産糸状菌類図鑑

nbdc00761
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 日本産糸状菌類図鑑

日本産糸状菌類図鑑
type: Dataset
title: Japanese Fungi on Plants @en
description: 農業環境には10万種ともいわれる糸状菌類が生息しています。その中でも植物体上には共生するもの、病気を起こすもの、常在的に生息するものなど様々な菌類が生活しています。この図鑑ではこれらの糸状菌類を解説し、画像と共に紹介いたします。学名、分類、発生状況、無性世代ならびに有性世代の画像、病徴画像、農環研所蔵標本リスト等の情報が得られます。
description: The Japanese Fungi on Plants is an illustrated Encyclopedia of Japanese Filamentous Fungi, which collects and displays photos and information of fungi, such as scientific name, classification, conditions for growth, images of the asexual and sexual stages, images of symptoms, and index numbers for up to 100,000 species of fungi are also available. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.niaes.affrc.go.jp/inventory/microorg/mokuroku/zukan.html
landing page: http://www.niaes.affrc.go.jp/inventory/microorg/eng/zukan-e.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: T0015
theme: T0029
theme: T0030
theme: T0028
status: Active @en
status: 稼動中

nbdc00762
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-05
source: Integbio Database Catalog
primary topic: 保有糸状菌株リスト

保有糸状菌株リスト
type: Dataset
description: 酒類総合研究所で維持管理されている麹菌株のリストです。シャーレで培養された状態の写真や、顕微鏡写真、菌の形質などの情報があり、学術目的の場合、遺伝子資源分与願を提出すれば分譲を受けることができます。
language: ja
publisher: 独立行政法人酒類総合研究所
  type: Organization
  address country: 日本
landing page: http://www.nrib.go.jp/data/asp/strain.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5062
theme: T0017
status: 稼動中

nbdc00763
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-02-02
source: Integbio Database Catalog
primary topic: immu-no

immu-no
type: Dataset
alternative: いむーの（病理診断＆染色統合データベース）
description: 「いむーの」は病理診断、各種染色法などのナレッジデータベースです。神戸大学病院病理部が中心になり、運営しています。 病理診断に用いる抗体の情報を収集した抗体データベース、免疫染色理論・技術に関するページ、特殊染色を集めたページ、病理診断学・総論に関するページがあります。
language: ja
publisher: 神戸大学
  type: Organization
  address country: 日本
landing page: http://immuno2.med.kobe-u.ac.jp/
theme: T0015
theme: T0029
theme: T0007
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
theme: T0018
status: 稼動中

nbdc00764
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-17
source: Integbio Database Catalog
primary topic: 野菜図鑑

野菜図鑑
type: Dataset
description: 書籍「グラフィック100万人の野菜図鑑」の電子版です。'畑から食卓まで'を一貫したテーマとし、日常の食卓をにぎわす47種類の野菜についてカラフルな写真と楽しいイラストで紹介しています。
language: ja
publisher: 独立行政法人農畜産業振興機構
  type: Organization
  address country: 日本
landing page: http://vegetable.alic.go.jp/panfu/zukanmokuji.html
theme: T0014
theme: T0029
theme: T0030
status: 休止

nbdc00765
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 有機溶剤中毒症例データベース

有機溶剤中毒症例データベース
type: Dataset
description: 日本産業衛生学会有機溶剤中毒研究会が1984年から2000年にかけて刊行した「有機溶剤中毒症例集」をベースに電子化したものです。症例を発表した文献の有無、業務上認定申請及び決定状況などは、すべて症例収集当時のものです。また、各症例の診断はすべて症例報告者によってなされたもので、有機溶剤中毒であることが確定的な例から中毒の可能性がある例まで、幅広い診断確度の例が含まれています。
language: ja
publisher: 名古屋大学 大学院医学系研究科
  type: Organization
  address country: 日本
landing page: http://www.med.nagoya-u.ac.jp/~dicos/about-jp.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 休止

nbdc00766
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-12-12
source: Integbio Database Catalog
primary topic: Digital Atlas of Actinomycetes

nbdc00766
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-12
source: Integbio Database Catalog
primary topic: Digital Atlas of Actinomycetes

Digital Atlas of Actinomycetes
type: Dataset
description: Digital Atlas of Actinomycetes is a collection of micrographs and annotations about Actinomycetes. Data are collected from the 'Atlas of Actinomycetes' (Asakura Publishing Co., Tokyo, Japan; 1997) published by the Society for Actinomycetes Japan. This database allows to browse using section, genus and alphabetical index. @en
description: 日本放線菌学会は、1997年に朝倉書店より 『放線菌図鑑、Atlas of Actinomycetes』を刊行しました。 本書は、10ヶ国120人の研究者から提供された約400枚の放線菌の顕微鏡写真を日本語と英語の説明付きで収載しており、放線菌の形態上の多様性を網羅したモノグラフです。 これらの写真の中から著者の了解が得られた約120枚を選び、編集されたデジタル図鑑です。 現在、新しいバージョンのデータベース 「Digital Atlas of Actinomycetes Ver. 2 」(http://www.actino.jp/DigitalAtlas/) もご利用になれます。
language: ja
language: en
publisher: 日本放線菌学会
  type: Organization
  label: Society for Actinomycetes Japan @en
  address country: Japan @en
  address country: 日本
landing page: http://www.actino.jp/DigitalAtlas1/index.htm
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1760
theme: T0029
theme: T0030
status: Active @en
status: 稼動中

nbdc00767
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-07-17
source: Integbio Database Catalog
primary topic: EM Navigator

nbdc00767
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-07-17
source: Integbio Database Catalog
primary topic: EM Navigator

EM Navigator
type: Dataset
alternative: 3D Electron Microscopy (3D-EM) Data Navigator @en
description: 生体分子や生体組織の3次元電子顕微鏡データを、気軽にわかりやすく眺めるためのウェブサイトです。EMDB と PDB のデータを利用しています。
description: EM Navigator is a web site to browse 3D electron microscopy (3D-EM) data of biological molecules and assemblies, based on EMDB and PDB data for beginners, non-specialists, and experts in 3D-EM or structural/molecular biology. Each entry contains interactive 3D images and associated information such as a summary, literature, experiment methods, slice data, etc. @en
language: ja
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
landing page: http://pdbj.org/emnavi/?&lang=en
landing page: http://pdbj.org/emnavi/
theme: T0022
theme: T0029
theme: T0007
status: Active @en
status: 稼動中

nbdc00768
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-19
source: Integbio Database Catalog
primary topic: 今月の分子

今月の分子
type: Dataset
description: このサイトはRCSBの David S. Goodsell博士による「Molecule of the Month」を日本語に訳したものです。社会で話題となっている事柄に関わる分子を蛋白質構造データバンク（PDB）から選び、機能と構造に関して解説しています。 PDBjが提供する教育的コンテンツ (http://integbio.jp/dbcatalog/record/nbdc01611) の１つです。
language: ja
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  address country: 日本
landing page: http://www.pdbj.org/mom/
theme: T0022
theme: T0029
theme: T0007
theme: T0030
status: 稼動中

nbdc00769
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 万見 (Yorodumi)

nbdc00769
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 万見 (Yorodumi)

万見 (Yorodumi)
type: Dataset
title: Yorodumi @en
description: Yorodumi is a database of 3D structures of biological molecules. This database contains 3D structure images of biological molecules from the Protein Data Bank (PDB) and EM Data Bank (EMDB) to easily watch, move and rotate. Jmol and jV (PDBj Viewer) are used as 3D molecular structure viewer applets. @en
description: 万見は、生体分子の3次元構造を気軽に眺めて、見て、動かして、回して、学んで、楽しむためのウェブページです。Protein Data Bank (PDB) と EM Data Bank (EMDB) のデータを利用しています。分子構造ビューアアプレットとして「Jmol」と「jV (PDBj Viewer)」を利用しています。
language: ja
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
landing page: http://pdbj.protein.osaka-u.ac.jp/emnavi/viewtop.php?lang=en
landing page: http://pdbj.protein.osaka-u.ac.jp/emnavi/viewtop.php
theme: T0022
theme: T0007
status: Active @en
status: 稼動中

nbdc00770
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-01-07
source: Integbio Database Catalog
primary topic: Protein Globe

nbdc00770
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-07
source: Integbio Database Catalog
primary topic: Protein Globe

Protein Globe
type: Dataset
description: 代表的なPDBエントリーを点で表し、構造の似ているエントリーほど距離が近くなるよう球上に配置してタンパク質の世界を表現したものです。分子の構造的位置づけを視覚的にとらえながら、PDBjおよびその他関連サービスを利用するための視覚的インタフェースとして利用できます。
description: Protein Globe is a visual database of protein structures. The database consists of a spherical representation of protein fold structures (the globe) that users can navigate to select structures of interest. The globe is designed such that similar structures are close together. Users can then select structures and use other PDBj functionalities to explore further. @en
language: en
publisher: 大阪大学 蛋白質研究所
  type: Organization
  label: Osaka University Institute for Protein Research @en
  address country: Japan @en
  address country: 日本
landing page: http://www.pdbj.org/globe/
theme: T0022
theme: T0007
status: 運用終了
status: Closed @en

nbdc00771
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-03-16
source: Integbio Database Catalog
primary topic: VegMarks

nbdc00771
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-03-16
source: Integbio Database Catalog
primary topic: VegMarks

VegMarks
type: Dataset
alternative: a DNA marker database for vegitables
description: 各種園芸作物のDNAマーカーや連鎖地図情報を蓄積し公開しているデータベースです。 品目ごとに、連鎖地図、DNAマーカーの塩基配列、検出条件、品種系統間多型データ、論文情報などがご利用いただけます。 現在登録されている作物は、ハクサイ、ネギ、キュウリ、ナス、メロン、トマト、ピーマンです。
description: This database contains DNA marker and linkage map information for a variety of garden crops. For each crop, information such as the linkage map, DNA marker sequences, conditions for detection, data on polymorphisms between cultivars, and relevant publications can be accessed. @en
language: ja
language: en
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 野菜茶業研究所
  type: Organization
  label: National Agriculture and Food Research Organization,National Institute of Vegetable and Tea Science @en
  address country: Japan @en
  address country: 日本
landing page: https://vegmarks.nivot.affrc.go.jp/VegMarks/app/page/homej
landing page: https://vegmarks.nivot.affrc.go.jp/VegMarks/app/page/home
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3656
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3711
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3659
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4111
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4072
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/35875
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: T0003
theme: T0021
status: Active @en
status: 稼動中

nbdc00772
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: NIAH 病理アトラス

NIAH 病理アトラス
type: Dataset
description: 都道府県の家畜保健衛生所職員の方を対象に、病理診断に役立てていただくための病理画像を提供しています。現在は、1)牛病、2)豚病、3)鶏病、4)その他 の各疾病の病理画像と参考情報を提供しています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 動物衛生研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/niah/niah_atlas/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: T0014
status: 稼動中

nbdc00773
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: 写真で見る家畜の有毒植物と中毒

写真で見る家畜の有毒植物と中毒
type: Dataset
description: 家畜の有毒植物について、基本情報、写真、有毒成分、中毒症状、病理所見、文献情報を提供しています。 本サイトの情報は、2000年3月に刊行された「写真で見る家畜の有毒植物と中毒」（畜産技術協会）をウェブ化したものです。ウェブ化に際しては、テキスト、写真等に一部修正や変更を加えています。上記冊子に収載されていない植物の情報についても順次追加していく予定です。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 動物衛生研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/org/niah/disease_poisoning/plants/
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0029
theme: T0030
status: 稼動中

nbdc00774
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-26
source: Integbio Database Catalog
primary topic: 家畜の監視伝染病

家畜の監視伝染病
type: Dataset
description: 家畜伝染病と届出伝染病について、原因、疫学、臨床症状、病理学的変化、病原学的検査、抗体検査、予防・治療、発生情報、参考文献を調べることができます。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 動物衛生研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/org/niah/disease_fact/kansi.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9850
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9963
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9796
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9979
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7460
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1549675
status: 稼動中

nbdc00775
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: 写真で見る外来雑草

写真で見る外来雑草
type: Dataset
description: 全国の飼料畑等で問題となっている外来雑草に関するデータベースです。科名、種名、学名、葉の形状、種子の形状から検索でき、外来雑草の解説、群生写真、全体写真、種子の写真を確認できます。本データベースは「写真で見る外来雑草」（畜産技術協会編）を元に作製されています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 畜産草地研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/nilgs-neo/weedlist/
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0029
theme: T0030
status: 稼動中

nbdc00776
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 飼料作物病害図鑑 (Illustrated Encyclopedia of Forage Crop Diseases)

nbdc00776
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 飼料作物病害図鑑 (Illustrated Encyclopedia of Forage Crop Diseases)

飼料作物病害図鑑 (Illustrated Encyclopedia of Forage Crop Diseases)
type: Dataset
title: Illustrated Encyclopedia of Forage Crop Diseases @en
description: 日本で発生する飼料作物病害について、畜産草地研究所、およびその前身のひとつである草地試験場が長年にわたって調査・研究を行ってきた成果を広く活用いただくために、各病害の病徴や病原菌の写真を中心に図鑑の形にまとめました。 宿主植物名、病原菌名、病徴から検索ができ、それぞれの病害について解説と病徴や病原菌の写真、文献情報が得られます。
description: This encyclopedia describes forage crop diseases in Japan, including causal agents and photographs of the symptoms about forage crop diseases, in support of investigations and experiments conducted at the Institute of Livestock and Grassland Science. Users can perform searches by host plant name, pathogen, or pathogenic features, which lead to detailed information on the disease, photographs of the pathogen, and other relevant literatures. @en
language: ja
language: en
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 畜産草地研究所
  type: Organization
  label: National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science @en
  address country: Japan @en
  address country: 日本
landing page: http://www.naro.affrc.go.jp/org/nilgs/diseases/dtitle.html
landing page: http://www.naro.affrc.go.jp/org/nilgs/diseases/detitle.html
theme: T0015
theme: T0029
theme: T0030
status: Active @en
status: 稼動中

nbdc00777
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-10-02
source: Integbio Database Catalog
primary topic: PGE （アーカイブ）

PGE （アーカイブ）
type: Dataset
alternative: Gene Expression Pattern Database of Mouse Embryos
description: 哺乳類の初期発生における非対称性の出現を遺伝子レベルから探るために、マウス初期胚で発現している約25000個のcDNAの部分塩基配列を決定し、胚の体軸形成に関連する遺伝子や約4000の新規遺伝子を見い出しました。受精卵、2細胞期、4細胞期、8細胞期、16細胞期、胞胚期のEST解析による発現量をデータベース化したものです。現在は提供を終了し、過去のデータセットは生命科学系データベースアーカイブから取得可能です。
language: ja
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10725249
landing page: http://dbarchive.biosciencedbc.jp/jp/pge/desc.html
theme: T0024
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
status: 稼動中

nbdc00778
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: 「健康食品」の素材情報データベース

「健康食品」の素材情報データベース
type: Dataset
description: 健康食品に利用されている素材（成分）一覧から目的の素材名を選ぶと、素材の概要が表示されます。「すべての情報を表示」ボタンを押すと、構造式、分析法、有効性、安全性、総合評価、参考文献など詳細情報が得られます。
language: ja
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  address country: 日本
landing page: https://hfnet.nibiohn.go.jp/contents/indiv.html
theme: T0015
theme: T0023
theme: T0030
status: 稼動中

nbdc00779
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: トクホなど機能性食品データベース

トクホなど機能性食品データベース
type: Dataset
description: 特定保健用食品（トクホ）などの機能性食品について、機能性成分の名称、化学式、効能、詳細な安全情報、分析情報などを提供しています。 大阪市の健康・予防医療分野における産業振興の一環として、市民の健康増進に役立てていただくことを目的としています。
language: ja
publisher: 大阪市立環境科学研究所
  type: Organization
  address country: 日本
landing page: http://www.iphes.city.osaka.jp/FunctionalFoods/index.nsf
theme: T0015
theme: T0019
theme: T0030
status: 休止

nbdc00781
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2018-07-02
language: en
modified: 2018-07-02
source: Integbio Database Catalog
primary topic: Mindsガイドラインライブラリ

nbdc00781
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-06-24
source: Integbio Database Catalog
primary topic: Mindsガイドラインライブラリ

Mindsガイドラインライブラリ
type: Dataset
title: MINDS @en
alternative: Medical Information Network Distribution Service @en
description: 患者と医療者の双方に向けて診療ガイドラインと関連情報を提供するサイトです。日本で公開された診療ガイドラインを収集し、評価選定の上、著作者の許諾にもとづき掲載しています。医療提供者向けと一般向けに分かれており、疾患カテゴリーによる絞り込みやキーワードによる検索が可能です。診療ガイドライン作成者向けの情報や、一般向けの診療ガイドライン解説、診療ガイドライン利用者向け情報もあります。
description: This service provides information to medical professionals and patients on relevant treatment therapy options that are sufficiently supported by scientific evidence so the best possible treatment can be chosen and agreed upon by both parties, in accordance with patients' wishes, beliefs, medical ethics, and social restrictions. Medical consultation guidelines and literature references available from this service are prepared by experts based on scientific evidence. Recommendations in the guidelines are based on scientific judgments supported by the accumulated findings of medical research and therefore can support decision making in clinical settings. Guidelines and literature references can be found using the complete viewing and search function. A table of contents (for viewing), keyword search function, and question-based viewing (clinical questions) are available. @en
language: ja
language: en
publisher: 公益財団法人 日本医療機能評価機構
  type: Organization
  label: Japan Council for Quality Health Care @en
  address country: Japan @en
  address country: 日本
landing page: https://minds.jcqhc.or.jp/
landing page: https://minds.jcqhc.or.jp/english/english.php
theme: T0016
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00782
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Trifolium pratense EST Index

nbdc00782
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Trifolium pratense EST Index

Trifolium pratense EST Index
type: Dataset
description: This is a database of red clover expressed sequences. The database contains consensus gene sequences and EST reads and allows for BLAST and keyword search. Data are available for download. @en
description: アカツメクサの38,109 ESTsの解析結果を格納しています。
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: index.html
  access URL: http://est.kazusa.or.jp/en/plant/red_clover/EST/index.html
landing page: http://est.kazusa.or.jp/en/plant/red_clover/EST/index.html
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/57577
theme: T0002
status: Active @en
status: 稼動中

nbdc00783
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MassBase

nbdc00783
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-11-27
source: Integbio Database Catalog
primary topic: MassBase

MassBase
type: Dataset
alternative: A comprehensive mass spectral tags archive for plant metabolomics @en
description: MassBaseは代謝産物(メタボライト）に関するマススペクトラルタグ（MST）のアーカイブです。主に植物の生体サンプルやその代謝産物から得られた生のクロマトグラムデータおよびクロマトグラムデータを解析したテキストデータを収録しています。MassBankやKNApSAcKのような他のデータベースと組み合わせて興味のある代謝を理解するだけでなく、代謝物質ピークを抽出し、代謝物質をアノテイトするパイプライン・ソフトウェアを開発するためにも活用できます。全てのデータセットがダウンロード可能です。
description: MassBase is a fundamental archive of mass spectral tags (MST) for metabolomics. It includes both known and unknown assigned (or predicted) peaks that are found in biological samples (mainly plants) and standard chemical reagents for peak annotation. It provides raw mass chromatograms from various biological samples as well as text-file data of these raw chromatograms. It is expected to contribute to an understanding of the metabolism of organisms together with MassBank and KNApSAcK databases, and that it will help with the development of pipeline software to extract metabolite peaks from annotated metabolites in the process of linking DNA information to metabolism. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: http://webs2.kazusa.or.jp/massbase/index.php?action=Massbase_DownloadAll&filename=README.txt&instrument_id=1&kind=readme
  rights: http://webs2.kazusa.or.jp/massbase/index.php?action=Massbase_DownloadAll&filename=README.txt&instrument_id=1&kind=readme
  access URL: http://webs2.kazusa.or.jp/massbase/index.php?action=Massbase_ShowDownload
landing page: http://webs2.kazusa.or.jp/massbase/index.php/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3847
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/562
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/51277
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4084
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4097
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/98038
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/224085
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/34305
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3271
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4081
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3981
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/180498
theme: T0010
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3880
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3879
theme: T0018
status: Active @en
status: 稼動中

nbdc00784
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RnR

nbdc00784
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: RnR

RnR
type: Dataset
alternative: Regulatory-network Research in Arabidopsis T87 cultured cells @en
description: RnRはT87培養細胞における遺伝子転写や蓄積する代謝産物の予測データベースです。このデータベースは214のDNAマイクロアレイと222のGC-MS、202のUPLC-MSアッセイをベースにしています。
description: This is a database of over-expression experiments in Arabidopsis T87 cultured cells. Approximately 185 constructs were selected as relating to metabolism and used for DNA microarray, GC-MS, and UPLC-MS assays. The results of these analyses can be accessed to understand large-scale regulatory relationships involving gene expression and metabolite formation in plants. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://webs2.kazusa.or.jp/kagiana/rnr/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0024
theme: T0010
theme: T0026
theme: T0001
theme: T0002
status: Active @en
status: 稼動中

nbdc00785
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: NEDO database

nbdc00785
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-24
source: Integbio Database Catalog
primary topic: NEDO database

NEDO database
type: Dataset
alternative: New Energy and Industrial Technology Development Organization Database
description: かずさDNA研究所のヒト脾臓cDNAライブラリー由来のcDNAクローンの配列データを収集したデータベースです（NEDOヒトcDNA配列決定プロジェクト）。cDNAの全てが完全長ではなく、平均サイズは4.5kbです。本プロジェクトで得られたcDNAクローンはFLJから始まるIDが付与されており、かずさcDNA配列決定プロジェクトで得られたクローンはKIAAから始まるIDが付与されています。
description: NEDO database is a database of human spleen cDNA clones with sequence information for spleen clones listed by several indices and sequencing information and plots for each clone. In addition to browsing clones, users can search by FLJ ID, accession, or clone name. @en
language: en
publisher: かずさディー・エヌ・エー研究所
  type: Organization
  label: Kazusa DNA Research Institute @en
  address country: Japan @en
  address country: 日本
landing page: http://www.kazusa.or.jp/NEDO/
theme: T0021
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: Active @en
status: 稼動中

nbdc00786
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: 毒きのこデータベース

毒きのこデータベース
type: Dataset
description: 日本の毒きのこと中毒の型を分類し、中毒症状の概略と毒成分、きのこの見分け方、治療法を記している。代表的な毒きのこについてはカラー写真を掲載している。
language: ja
publisher: 滋賀大学
  type: Organization
  address country: 日本
landing page: https://toadstool.jimdo.com/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0015
theme: T0010
theme: T0029
theme: T0030
status: 稼動中

nbdc00787
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Streptococcus pyogenes

nbdc00787
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Streptococcus pyogenes

Streptococcus pyogenes
type: Dataset
description: This is a database of the Streptococcus pyogenes genome. The database contains a genome browser, lists of ORFs and other functional elements, and BLAST search. Data is available for download. @en
description: 化膿レンサ球菌のゲノム情報データベースです。ゲノムビューワやrRNAおよびtRNAの表、ORF検索、遺伝子検索、ブラスト検索などが利用できます。
language: en
publisher: 東京工業大学
  type: Organization
  label: Tokyo Institute of Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12799345
landing page: http://genome.bio.titech.ac.jp/bacteria/spyo/index.html
theme: T0021
theme: T0001
theme: T0007
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1314
status: 休止
status: Inactive @en

nbdc00788
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 薬剤分類情報閲覧システム

薬剤分類情報閲覧システム
type: Dataset
description: 新薬の薬価算定にかかる類似薬の選定を図る観点から、平成11年12月の中医協で了解された「薬価制度改革の基本方針」に基づき、効能・効果、薬理作用等に着目し既存品の分類を行ったものです。 分類名と品目名から検索し、各薬品の効能効果、用法用量が表示されます。
language: ja
publisher: 厚生労働省 保険局
  type: Organization
  address country: 日本
landing page: http://www.iryohoken.go.jp/shinryohoshu/yakuzaiMenu/
theme: T0028
theme: T0012
theme: T0030
status: 稼動中

nbdc00789
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: Food Composition Database (食品成分データベース)

Food Composition Database (食品成分データベース)
type: Dataset
description: 食品成分データベースは、「五訂増補 日本食品標準成分表」（平成17年1月24日 文部科学省 科学技術・学術審議会 資源調査分科会 報告）、「五訂増補 日本食品標準成分表 脂肪酸成分表編」（平成17年1月24日 文部科学省 科学技術・学術審議会 資源調査分科会 報告）をデータソースとして、食品成分に関するデータをインターネットを通じて提供しています。
language: ja
publisher: 文部科学省
  type: Organization
  address country: 日本
landing page: http://fooddb.mext.go.jp/
theme: T0015
theme: T0010
theme: T0007
theme: T0030
status: 稼動中

nbdc00790
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-06
source: Integbio Database Catalog
primary topic: MSDマニュアルプロフェッショナル版

MSDマニュアルプロフェッショナル版
type: Dataset
description: 世界で広く活用されている医学情報源のメルクマニュアルを、Webベースで検索できるようにしたデジタルサービス「MSDマニュアル」のなかで、医師や医療従事者、医学生向けに専門性の高い情報を収録したデータベースです。医薬品の研究開発力で高い評価を得ているMerck & Co., Inc., Kenilworth, N.J., U.S.A.が、非営利事業として提供しています。
language: ja
language: en
publisher: MSD株式会社
  type: Organization
  address country: 日本
landing page: http://www.msdmanuals.com/ja-jp/プロフェッショナル
theme: T0015
theme: T0012
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00791
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-06
source: Integbio Database Catalog
primary topic: MSDマニュアル家庭版

MSDマニュアル家庭版
type: Dataset
description: 世界で広く活用されている医学情報源メルクマニュアルを、Webベースで検索できるようにしたデジタルサービス「MSDマニュアル」をベースとして、一般向けに分かりやすく書き下ろした家庭向け医学書です。医薬品の研究開発力で高い評価を得ているMerck & Co., Inc., Kenilworth, N.J., U.S.A.が、非営利事業として提供しています。
language: ja
language: en
publisher: MSD株式会社
  type: Organization
  address country: 日本
landing page: http://www.msdmanuals.com/ja-jp/ホーム
theme: T0015
theme: T0012
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00792
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: APASD

nbdc00792
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: APASD

APASD
type: Dataset
alternative: Asian-Pacific Alien Species Database
description: 近年、世界的な物や人の移動が著しく拡大するとともに、世界各国で昆虫を含む動物、植物、微生物などの侵略的外来生物が増加し、これらは農作物に直接被害を与えるだけでなく、固有の生物多様性や生態系に対する深刻なかく乱要因にもなっています。アジア・太平洋諸国においても、外来生物がもたらす被害は大きく、この地域における外来生物の動態を把握し、蔓延防止および経済的生態的被害軽減策に関する情報を蓄積する必要があります。そのために、アジア・太平洋諸国の農業生態系に生息する外来生物に関わる最新情報をデータベース化し、インターネットによる情報の共有化を推進しています。 本データベースに掲載する対象種は、アジア・太平洋地域の農業生態系に国境をこえて非意図的あるいは意図的に導入された外来生物（植物、動物、微生物等）とし、日本およびアジア地域を中心にデータを収集しています。外来生物の分類名、形態的特徴、定着状況、分布拡大、経済的および生態的被害、繁殖・生育特性、防除対策、文献、写真等が入力されており、これらを検索および閲覧することができます。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.niaes.affrc.go.jp/techdoc/apasd/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33208
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6960
theme: T0030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00793
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: JECDB

nbdc00793
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: JECDB

JECDB
type: Dataset
alternative: Japan Existing Chemical Data Base @en
alternative: 既存化学物質毒性データベース (Japan Existing Chemical Data Base)
description: 化学物質の毒性試験報告書を公開しています。化学物質名一覧やCAS番号、毒性試験の種類から検索することができます。
description: JECDB is a database of toxicity testing reports for existing chemicals maintained by National Institute of Health Sciences (NIHS). JECDB contains reports on Japan's own existing chemicals safety program and the OECD HPV (high production volume) chemicals program. Each report consists of the nomenclature of the chemical, an abstract with summarized data from several studies in English and test results in Japanese. Users can search reports by CAS Registry Numbers, names of chemical substances, and toxicity tests. @en
language: ja
language: en
publisher: 厚生労働省 国立医薬品食品衛生研究所
  type: Organization
  label: National Institute of Health Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://dra4.nihs.go.jp/mhlw_data/jsp/SearchPage.jsp
landing page: http://dra4.nihs.go.jp/mhlw_data/jsp/SearchPageENG.jsp
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00794
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-12-13
source: Integbio Database Catalog
primary topic: 食品照射データベース

食品照射データベース
type: Dataset
description: 電離放射線により処理された食品の安全性と利点は十分に証明されています。 食品照射に関して、人が一般に関心を持っている事柄について科学的に正確な情報を提供しています。
language: ja
publisher: 国立研究開発法人量子科学技術研究開発機構 高崎量子応用研究所
  type: Organization
  address country: 日本
landing page: http://foodirra.taka.qst.go.jp
theme: T0015
theme: T0030
status: 稼動中

nbdc00795
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-04-16
source: Integbio Database Catalog
primary topic: NBRC (Biological Resource Center, NITE)

nbdc00795
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-04-16
source: Integbio Database Catalog
primary topic: NBRC (Biological Resource Center, NITE)

NBRC (Biological Resource Center, NITE)
type: Dataset
description: 独立行政法人製品評価技術基盤機構 バイオテクノロジーセンター：NBRC (NITE Biological Resource Center)は、生物資源センターとして、糸状菌、酵母、細菌、放線菌、微細藻類など約9万株を収集・保存し、基礎研究から産業利用まで幅広い用途に提供しています。
description: NBRC is a database about bioresources collected by Biological Resource Center (NBRC), NITE. It includes collection of microbial resources and taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algae, bacteriophages and DNA resources for academic research and industrial applications. For users, it is able to distribute microorganism cultures, microbial genomic DNA clones, human cDNA clones, etc. @en
language: ja
language: en
publisher: 独立行政法人製品評価技術基盤機構
  type: Organization
  label: National Institute of Technology and Evaluation @en
  address country: Japan @en
  address country: 日本
landing page: http://www.nite.go.jp/nbrc/cultures/index.html
landing page: http://www.nite.go.jp/en/nbrc/cultures/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2763
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0001
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0017
status: Active @en
status: 稼動中

nbdc00796
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-05-27
source: Integbio Database Catalog
primary topic: GGDB

nbdc00796
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-05-27
source: Integbio Database Catalog
primary topic: GGDB

GGDB
type: Dataset
alternative: GlycoGene Database @en
description: This database provides information on the 180 human glycogenes discovered up to the time it was created. A glycogene is a DNA sequence associated with glycan synthesis. Examples of glycogenes are glycosyltransferase, sugar-nucleotide synthases, sugar-nucleotide transporters and sulfotransferases. The site contains important detail needed to study glycogenes. The information is presented as XML documents and include graphs. A simple keyword search is used to retrieve lists of glycogenes and their characteristics. Information can also be retrieved by means of the REST application (send request, receive response) as well as with the SOAP (send message with search parameters, receive an XML-formatted document) method. @en
description: 糖鎖合成に関連する遺伝子や、糖転移酵素の基質特異性に関する情報を収集しています。
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15467393
landing page: https://acgg.asia/ggdb2/
theme: T0024
theme: T0001
theme: T0007
theme: T0006
theme: T0008
status: Active @en
status: 稼動中

nbdc00797
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-06-14
source: Integbio Database Catalog
primary topic: GlycoprotDB

nbdc00797
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-06-14
source: Integbio Database Catalog
primary topic: GlycoprotDB

GlycoprotDB
type: Dataset
alternative: GlycoProtein Database
description: この糖タンパク質データベース(GlycoProtDB)は、線虫 (Strain N2)およびマウス(C52BL/6J系のオス)の組織を材料として、実験的に同定されたN結合型糖タンパク質の情報を一般に提供するためのデータベースです。現在、線虫試料より同定されたN結合型糖タンパク質全てと、マウス肝臓からコンカナバリンA（ConA）で捕集された糖タンパク質の情報を公開しています。これらのデータには、タンパク質(遺伝子)ID、タンパク質名、糖鎖修飾部位、および、糖ペプチドを捕集するために使用したレクチンの情報が含まれています。
description: This is a database of N-glycoproteins providing knowledge found by studying C.elegans N2 and glycoproteins found in mouse liver tissue. The list contains protein (gene) ID, protein name, glycosylated sites and lectins types used in the process of capturing glycopeptides. The method used to collect data is described and explained. Keyword search and advanced search options are provided whereby a single word may be entered, or a variety of known information about the researched object may be entered. Several gants making the research possible are acknowledged in the main body of the overview as are the laboratories that collected and supplied the data. @en
language: ja
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12754521
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17761667
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16212438
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17406563
landing page: https://acgg.asia/gpdb2/
theme: T0021
theme: T0008
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0007
status: Active @en
status: 稼動中

nbdc00798
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-05-27
source: Integbio Database Catalog
primary topic: LfDB

nbdc00798
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-05-27
source: Integbio Database Catalog
primary topic: LfDB

LfDB
type: Dataset
alternative: Lectin Frontier Database
description: レクチンフロンティアデータベース(LfDB)は、レクチンの詳細情報と、各構造を持つ糖鎖との相互作用データを収集、公開しているデータベースです。レクチンと糖鎖（ピリジルアミノ化糖鎖）の相互作用データは、自動化フロンタルアフィニティークロマトグラフィーシステムを用いて取得した定量的データです。
description: This database contains information about the quantity of interactions noted among a series of lectins and a panel of pyridylaminated (PA) glycans when exposed to an automated frontal affinity chromatography with fluorescence detection (FAC-FD) system. The data is presented in a bar graph format containing the affinity constants (Ka) of the lectins towards the glycans or, alternatively, an actual measurement (V-V0). It also provides the absolute values of sugar-protein interactions. The information provided can be relied upon to be accurate and therefore this database is a valuable resource in biological studies of glycans. Keyword and advanced search options are provided. @en
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/805787
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12223272
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15943812
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12968376
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17947995
landing page: https://acgg.asia/lfdb2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/64608
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4682
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3827
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/40245
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/399131
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/47519
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/509123
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8730
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5341
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/36461
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/49817
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3850
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3972
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7936
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6398
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7723
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3567
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3673
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1916
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4076
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6087
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5741
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theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1491
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8094
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7943
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1095465
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4641
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3818
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/679627
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/730

nbdc00799
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-05-27
source: Integbio Database Catalog
primary topic: GMDB

nbdc00799
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-05-27
source: Integbio Database Catalog
primary topic: GMDB

GMDB
type: Dataset
alternative: Glycan Mass Spectral DataBase @en
description: GMDBは、N-結合型糖鎖、O-結合型糖鎖、糖脂質糖鎖およびこれらの糖鎖の部分構造のMS2、MS3、およびMS4スペクトルのデータベースです。
description: GMDB is a database of glycan mass spectral data. It provides a novel tool for use in glycomics research. Glycans can be identified easily and quickly through spectral matching. The glycan structure of analytes can be estimated through comparison of the MSn spectra of analytes and MSn spectral images of glycans. Relevant spectral images can be searched based on a search of glycan composition or of m/z value. @en
language: ja
language: en
publisher: 国立研究開発法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16053281
landing page: https://jcggdb.jp/rcmg/glycodb/Ms_ResultSearch
theme: T0023
theme: T0008
status: Active @en
status: 稼動中

nbdc00801
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Rat Brain Sections: Super-fine images

nbdc00801
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: Rat Brain Sections: Super-fine images

Rat Brain Sections: Super-fine images
type: Dataset
description: This website was created to investigate whether it would be possible to share biological sample images with other interested Internet users. Feedback was requested in order to enable the site designers to further develop the concept. Section images of a rat brain are available. Lack of finance limited the number of images to only 7. Activity on this site ended in 2006. An e-mail address is however provided, should questions arise. @en
description: ラットの脳断面画像を7枚ほど見る事が出来ます。ズームイン、ズームアウト操作により脳の特定の部位に自分が入り込んで行くかのように感じる事ができます。
language: ja
language: en
publisher: 独立行政法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
landing page: http://riodb.ibase.aist.go.jp/rio-archive/frame.cgi?EDB055
landing page: http://riodb.ibase.aist.go.jp/rio-archive/frame.cgi?JDB055
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0014
theme: T0029
status: 運用終了
status: Closed @en

nbdc00802
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: ProSeg

nbdc00802
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: ProSeg

ProSeg
type: Dataset
alternative: A database of local structures of protein segments @en
description: This site contains a comprehensive collection of protein segments that were grouped according to similarities in their three-dimensional structure. These groups, called clusters, can be searched by entering a description of the backbone structure of the segment in question. Three possible methods of identification are provided, namely by input of the PDB ID and specific Chain ID of the segment, by direct input of the dihedral angles of the segment or by entering the appropriate DSSP (Define Secondary Structure of Proteins) symbols of the segment to be placed. @en
description: タンパク質分子の部分構造を網羅的に分類、整理したデータベースです。7万以上のセグメントが主鎖の立体構造類似性にしたがって数千個程度のクラスタに分類されています。
language: en
publisher: 独立行政法人産業技術総合研究所
  type: Organization
  label: National Institute of Advanced Industrial Science and Technology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18931918
landing page: http://riodb.ibase.aist.go.jp/proseg/cgi-bin/proseg.cgi
landing page: http://riodb.ibase.aist.go.jp/proseg/
theme: T0028
theme: T0022
theme: T0007
status: 運用終了
status: Closed @en

nbdc00803
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-23
source: Integbio Database Catalog
primary topic: 侵入生物データベース (Invasive Species of Japan)

nbdc00803
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-22
source: Integbio Database Catalog
primary topic: 侵入生物データベース (Invasive Species of Japan)

侵入生物データベース (Invasive Species of Japan)
type: Dataset
title: Invasive Species of Japan @en
description: 侵入生物の基本情報、侵入情報、法的扱い、移入元、影響、写真を提供するデータベースです。対象は、哺乳類、鳥類、爬虫類、両生類、魚類、昆虫類、その他の無脊椎動物、維管束植物です。
description: Invasive Species of Japan is a integrated database of invasive and alien species in Japan. Each entry contains basic and invasion information, such as range, route, impact, etc. The database allows to search with keywords or browse by taxon. Moreover, it provides links to online resources. @en
language: ja
language: en
publisher: 国立研究開発法人国立環境研究所
  type: Organization
  label: National Institute for Environmental Studies @en
  address country: Japan @en
  address country: 日本
landing page: http://www.nies.go.jp/biodiversity/invasive/index.html
landing page: http://www.nies.go.jp/biodiversity/invasive/index_en.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1294634
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7713
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/50557
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8292
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6447
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7898
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8782
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1292361
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6656
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/40674
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8459
theme: T0030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6231
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6341
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8504
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/58023
status: Active @en
status: 稼動中

nbdc00804
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-11-29
source: Integbio Database Catalog
primary topic: サプリメントデータベース

サプリメントデータベース
type: Dataset
description: 成分や機能性食品から掲載製品を検索できます。また、生活習慣病、身近な症状から、関連する成分や機能性食品、予防のためのアドバイスが得られます。
language: ja
publisher: 日本サプリメント協会
  type: Organization
  address country: 日本
landing page: http://www.j-sup.com/database/
theme: T0015
theme: T0030
status: 運用終了

nbdc00805
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-08-13
source: Integbio Database Catalog
primary topic: 生物アイコン

nbdc00805
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-13
source: Integbio Database Catalog
primary topic: 生物アイコン

生物アイコン
type: Dataset
title: Taxonomy icon @en
description: Taxonomy icon is a collection of icon materials illustrating biological species including Bacteria, Fungi, Protista, Plantae and Animalia. Taxonomy icon contains image icons of species and related information including common names, icon URLs, taxonomy IDs and the binomial names. Users can search, download, distribute and transmit icons under a Creative Commons license (Attribution 2.1 Japan). @en
description: 真正細菌から動植物を含む200種類以上の生物種のアイコン（イラスト）集です。ダウンロードしたアイコンを自由に改変・使用することができます。現在の収録数は220件です。
language: ja
language: en
publisher: 国立研究開発法人科学技術振興機構 バイオサイエンスデータベースセンター
  type: Organization
  label: Japan Science and Technology Agency National Bioscience Database Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README e.html
  rights: lic.html
  access URL: http://dbarchive.biosciencedbc.jp/en/taxonomy-icon/download.html
landing page: http://togodb.biosciencedbc.jp/togodb/view/taxonomy_icon
landing page: http://togodb.biosciencedbc.jp/togodb/view/taxonomy_icon_en
theme: T0014
theme: T0029
status: Active @en
status: 稼動中

nbdc00806
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-05-17
source: Integbio Database Catalog
primary topic: 統合TV

nbdc00806
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-05
source: Integbio Database Catalog
primary topic: 統合TV

統合TV
type: Dataset
title: TogoTV @en
description: TogoTV international is a repository of educational and tutorial videos demonstrating how to use biological databases and web tools such as NCBI, UCSC Genome Browser, etc. Each entry contains a title and a short explanation of a video, as well as an embedded video file. Users can search videos by keywords, tags and categories. @en
description: 統合TVは、ライフサイエンス統合データベースセンター (DBCLS)が発信するデータベース(DB)やツールの使い方を紹介した動画コンテンツです。
language: ja
language: en
publisher: 情報・システム研究機構 ライフサイエンス統合データベースセンター
  type: Organization
  label: Research Organization of Information and Systems Database Center for Life Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21803786
landing page: http://togotv.dbcls.jp/ja/
landing page: http://togotv.dbcls.jp/en/
theme: T0029
status: Active @en
status: 稼動中

nbdc00807
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2015-06-26
source: Integbio Database Catalog
primary topic: PODB3

nbdc00807
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-06-26
source: Integbio Database Catalog
primary topic: PODB3

PODB3
type: Dataset
alternative: Plant Organelles Database 3
description: PODB3 is a collection of databases describing organelles and their behavior in plants. The site contains visualizations and movies of organelles, protocols for studying plant organelles, and links to external sites. It is made up of of 6 individual parts: 'The Electron Micrograph Database', 'The Perceptive Organelles Database', 'The Organelles Movie Database', 'The Organellome Database', 'The Functional Analysis Database', and 'External Links to other databases and Web pages'. All the data and protocols in this database are populated by direct submission of experimentally determined data from plant researchers. @en
description: 蛍光タンパク質などで可視化された植物オルガネラの動画や静止画像、オルガネラ研究の解析方法や関連リンク集を収集したデータベースです。 「Electron Micrograph Database」では、野生種や変異種の様々な発生段階にある組織について電顕写真と作成条件がご覧になれます。 「Perceptive Organelles Database」では、環境刺激の中で異なる発生段階にある組織のオルガネラの反応が画像やムービーでご覧になれます。 「Organelles Movie Database」では、可視化されたオルガネラの組織や成長段階に応じた動きが、タイムラプス、Zスライス、投影画像でご覧になれます。 「Organellome database」では、様々な成長段階の組織におけるオルガネラに含まれる細胞構造を可視化した画像がご覧になれます。 「Functional analysis database」では、研究方法と関連文献、研究室の情報が得られます。 「External Links」では、多数の生物学関連のデータベースへのリンクがご利用になれます。
language: en
publisher: 自然科学研究機構 基礎生物学研究所
  type: Organization
  label: National Institute for Basic Biology @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17932059
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21115470
landing page: http://podb.nibb.ac.jp/Organellome
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0022
theme: T0029
theme: T0013
status: Active @en
status: 稼動中

nbdc00808
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GlycoForum

nbdc00808
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GlycoForum

GlycoForum
type: Dataset
title: Glycoforum @en
description: 糖質科学に関する総合情報サイトです。国内外の複合糖質研究の最前線を網羅しています。
description: Glycoforum is a portal site for glycoscience research. This portal site contains a search engine of literatures, newsletters, articles and information on forums related to glycoscience. Users can search within the website by keywords, and see the number of papers registered in Pubmed by categories. @en
language: ja
language: en
publisher: 生化学工業株式会社
  type: Organization
  label: Seikagaku Corporation @en
  address country: Japan @en
  address country: 日本
landing page: http://www.glycoforum.gr.jp/indexJ.html
landing page: http://www.glycoforum.gr.jp/index.html
theme: T0008
theme: T0030
status: Active @en
status: 稼動中

nbdc00809
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: がん情報サイト (Cancer Information Japan)

がん情報サイト (Cancer Information Japan)
type: Dataset
description: がん情報サイトは日本で唯一米国国立がん研究所 (National Cancer Institute: NCI)とLicense契約している、がんの最新治療情報や治療成績、臨床研究の情報、がんに用いられる標準治療薬や支持療法薬といった、がんに関する最新かつ包括的な情報を配信するサイトです。
language: ja
publisher: 先端医療振興財団
  type: Organization
  address country: 日本
landing page: http://cancerinfo.tri-kobe.org/
theme: T0015
theme: T0030
status: 稼動中

nbdc00810
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-28
source: Integbio Database Catalog
primary topic: HACCP関連情報データベース

HACCP関連情報データベース
type: Dataset
description: 食品の安全性の確保や品質管理の徹底に関する要請はより一層高まっており、消費者に安全で高品質な食品を提供するため、食品の製造過程におけるＨＡＣＣＰ手法の導入が要請されています。しかしながら、その導入のためには一定施設の整備と共に、専門的知見の入手が必要なことから、中小企業が多数を占める食品製造業者にとって困難をともなう面があります。そこで、中小の食品製造業者によるＨＡＣＣＰのさらなる導入推進にむけて、必要となる技術情報に係るデータベースを構築し、環境整備を促進することを目的としています。
language: ja
publisher: 一般財団法人食品産業センター
  type: Organization
  address country: 日本
landing page: https://haccp.shokusan.or.jp
theme: T0015
theme: T0018
theme: T0030
status: 稼動中

nbdc00811
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: がんinfo.

がんinfo.
type: Dataset
description: がんInfo. は、米国国立がん研究所（National Cancer Institute : NCI）のがん情報（PDQ）の患者向け情報を、NCI承認のもと国際医学情報センターの責任で翻訳し提供しております。93項目中、40項目がご覧になれます。
language: ja
publisher: 国際医学情報センター
  type: Organization
  address country: 日本
landing page: http://www.imic.or.jp/cancer/index.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00812
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG DRUG

nbdc00812
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: KEGG DRUG

KEGG DRUG
type: Dataset
alternative: Drugs viewed as perturbants to the molecular system @en
description: KEGG DRUG is a comprehensive database of drug information about all marketed drugs in Japan, as well as many prescription drugs in USA and Europe. KEGG DRUG is based on chemical structure or component, and each entry contains information about drug targets (pathways), metabolizing enzymes and other interacting molecules. This database also includes crude drugs and TCM (Tradictional Chinese Medicine). Users can check for drug-drug interaction, view structure maps representing the history of drug development and search drugs by generic names, trade names, and components. @en
description: KEGG DRUG は、日本、米国、欧州の医薬品情報を、化学構造と成分の観点から一元的に集約・管理したデータベースです。とくに日本の医薬品は医療用（処方薬）だけでなく一般用（大衆薬、OTC薬）もすべて網羅し、個々の製品情報（添付文書情報）へのリンクがつけられています。また化学薬品だけでなく、生薬・漢方方剤もデータベース化されています。
language: ja
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/kegg/drug/drug_ja.html
landing page: http://www.genome.jp/kegg/drug/
theme: T0012
theme: T0023
theme: T0026
status: Active @en
status: 稼動中

nbdc00813
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG DISEASE

nbdc00813
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: KEGG DISEASE

KEGG DISEASE
type: Dataset
alternative: Diseases viewed as perturbed states of the molecular system
description: KEGG DISEASEは、遺伝要因が既知の疾患（単一遺伝子疾患及び多因子性疾患）と病原体ゲノムが既知の感染症疾患に関する情報を、計算処理が可能な形に集約したデータベースです。各疾患エントリは H番号とよばれるアクセッション番号で識別され、関連するパスウエイ、病因遺伝子のリスト、ならびに環境要因、診断マーカー、治療薬などの分子のリストで表現されています。
description: KEGG DISEASE is a database of human diseases with information on perturbed molecular networks. Each disease entry contains a list of known disease genes, environmental factors (carcinogens, pathogens, etc), diagnostic markers and therapeutic drugs with reference information. This database provides maps of molecular networks associated with diseases through links to the KEGG PATHWAY database. Users can search human diseases by names, description, categories, pathways, and known causative genes. @en
language: ja
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/kegg/disease/
landing page: http://www.genome.jp/kegg/disease/disease_ja.html
theme: T0015
theme: T0012
theme: T0026
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00814
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG COMPOUND

nbdc00814
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-19
source: Integbio Database Catalog
primary topic: KEGG COMPOUND

KEGG COMPOUND
type: Dataset
alternative: Metabolome informatics resource integrating genomics and chemistry
description: KEGG COMPOUND is a database of biologically relevant compounds, including chemical structures and associated information for compounds in the KEGG database such as small molecules, biopolymers, and other related substances. The site also has a collection of links to other relevant KEGG resources such as GLYCAN. @en
description: KEGG COMPOUNDは、小分子、生体高分子、および生体関連化学物質のデータベースです。 各エントリーはC番号とよばれるアクセッション番号で識別され、化学構造や関連する生体反応、パスウエイ、他のデータベースとのリンク情報が含まれています。
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20460463
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19327755
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17400247
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17921532
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14505407
distribution: Distribution
  description: README.ligand
  rights: legal.html
  access URL: http://www.kegg.jp/kegg/download/
landing page: http://www.genome.jp/kegg/compound/
theme: T0023
theme: T0026
theme: T0007
theme: T0005
theme: T0006
theme: T0011
status: Active @en
status: 稼動中

nbdc00815
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBGET Search - ENZYME

nbdc00815
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DBGET Search - ENZYME

DBGET Search - ENZYME
type: Dataset
description: KEGG ENZYMEは、IUBMB/IUPAC生化学命名委員会によって定義された酵素命名法 (EC番号)を識別子とし、酵素分類、反応式、基質、生成物、補因子、生物種、関連遺伝子、パスウエイ情報が収集されています。トリニティー大学（ダブリン）のExplorEnzデータベースを基にしています。
description: KEGG ENZYME is a database of enzymes involved in recognized KEGG biochemical reactions, and can be searched by KEGG enzyme ID or by name. Results include enzyme class, reaction, pathway, and gene information. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/dbget-bin/www_bfind?enzyme
theme: T0026
theme: T0019
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00816
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: KEGG GENOME

nbdc00816
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: KEGG GENOME

KEGG GENOME
type: Dataset
alternative: Organisms and ecosystems with genome sequence information
description: KEGG GENOME is a database of full genome sequence information for multiple species. The database is a collection of references to descriptive genome literature and has links to reaction pathways in each organism, comparative tools, and taxonomy based on KEGG information and provides KEGG pathway information and links to outside resources including primary literature. @en
description: KEGG GENOMEは、全ゲノム配列が決定されたすべての生物種の情報を収集しています。RefSeq 等の公共データベースより作成しています。
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/kegg/genome.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6231
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2763
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5752
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33634
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/71240
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4447
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7742
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6447
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3041
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2830
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33682
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33630
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6656
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/554915
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6073
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/5719
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/207245
status: Active @en
status: 稼動中

nbdc00817
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG ORTHOLOGY (KO) Database

nbdc00817
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG ORTHOLOGY (KO) Database

KEGG ORTHOLOGY (KO) Database
type: Dataset
alternative: Linking genomes to pathways by ortholog annotation
description: KEGG ORTHOLOGYは、KEGGパスウェイの各ノードまたはBRITE機能階層の最下層ノードに対応したオーソロググループを手作業で定義したものです。ゲノム中の各遺伝子にKO識別子（K番号）を付与することで、KEGGパスウェイやBRITE機能階層へのマッピング（エンリッチメント）が可能となります。KOシステムは、ゲノムの情報からパスウェイ等高次生命システム情報を解読するための架け橋となります。
description: KEGG ORTHOLOGY is a database of KEGG pathway ortholog groups, and contains the pathways at the core of the KEGG representation system. Users can search for ortholog groups and explore members across species. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/kegg/ko.html
theme: T0028
theme: T0026
theme: T0001
status: Active @en
status: 稼動中

nbdc00818
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG REACTION

nbdc00818
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG REACTION

KEGG REACTION
type: Dataset
alternative: Knowledge base for predicting biodegradation and biosynthesis
description: KEGG REACTIONは、KEGG ENZYMEに格納されているすべての反応と、KEGG PATHWAYの代謝パスウエイの反応を蓄積したデータベースです。 各反応はR番号によって識別され、 反応の構造式や関連する酵素のオーソロググループが収集されており、ゲノム(酵素遺伝子)情報と化学(化合物のペア)情報の統合解析を可能としています。
description: KEGG REACTION is a database of enzymatic reactions. The database contains all KEGG enzyme interactions and KEGG pathway metabolic reactions, including related pathways, and uses IUBMB nomenclature. Users can also find the reaction pathway of individual enzymes. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17516640
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15600352
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20435670
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14505407
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19477985
landing page: http://www.genome.jp/kegg/reaction/
theme: T0028
theme: T0023
theme: T0026
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00819
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: DBGET Search - RPAIR

nbdc00819
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: DBGET Search - RPAIR

DBGET Search - RPAIR
type: Dataset
description: KEGG RPAIR is a database of substrate-product reaction pairs. The database contains the main chemical reactants from KEGG REACTION events. Users can search for substrates or products by their KEGG compound ID to obtain all reaction pairs of that chemical, related reactions, and enzymes that catalyze the reaction. @en
description: KEGG RPAIRは、KEGG REACTIONの各反応の基質-生成物 (反応物質ペア）を収集したデータベースです。RP番号を識別子とし、基質と生成物の化学構造、RDMパターンで記述した化学構造変化、関与する酵素、KCFデータなどが含まれます。 一般的に、1つの反応には複数の反応物質ペアが存在しますが、特にKEGGパスウエイマップ上のものはメインのペアと呼ばれます。
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/dbget-bin/www_bfind?rpair
theme: T0026
theme: T0007
theme: T0006
status: 運用終了
status: Closed @en

nbdc00820
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBGET Search - VGENES

nbdc00820
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-28
source: Integbio Database Catalog
primary topic: DBGET Search - VGENES

DBGET Search - VGENES
type: Dataset
description: KEGG VGENESは、RefSeqからウイルス遺伝子情報を自動抽出して作成したデータベースです。2015年9月現在、データはKEGG GENES Database (http://integbio.jp/dbcatalog/record/nbdc00532) へ移行しています。
description: The KEGG VgeneS database contains gene and protein sequence information from sequenced viral genomes that can be searched by gene name or ID. Data is from and provides links to NCBI resources. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/dbget-bin/www_bfind?vgenes
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0001
status: 運用終了
status: Closed @en

nbdc00821
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBGET Search - VGENOME

nbdc00821
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-28
source: Integbio Database Catalog
primary topic: DBGET Search - VGENOME

DBGET Search - VGENOME
type: Dataset
description: KEGG VGENOMEは、RefSeqからウイルスゲノム情報を自動抽出して作成したデータベースです。2015年9月現在、データはKEGG GENES Database (http://integbio.jp/dbcatalog/record/nbdc00532) へ移行しています。
description: KEGG VGENOME is a database of viral genomes with sequence, and taxonomy information for sequenced viruses. The entry for each virus provides references to primary literature. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/dbget-bin/www_bfind?vgenome
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0001
theme: T0030
status: 運用終了
status: Closed @en

nbdc00822
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-01-25
source: Integbio Database Catalog
primary topic: 3D MR Microscopy of Human Development by Kyoto & Tsukuba Universities

nbdc00822
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-01-25
source: Integbio Database Catalog
primary topic: 3D MR Microscopy of Human Development by Kyoto & Tsukuba Universities

3D MR Microscopy of Human Development by Kyoto & Tsukuba Universities
type: Dataset
description: This database is a collection of human embryo images. The images were collected by sagittal plane MR microscopy of embryos from the Kyoto Collection. Images can be browsed by developmental stage. @en
description: 筑波大学磁気共鳴画像研究所で開発された超並列型MR 顕微鏡による1,204のヒト胚の3D MR顕微鏡画像を公開しています。 ここで用いているヒト胚は、京都大学大学院医学研究所付属先天異常標本解析センター所蔵のヒト胚子・胎児標本コレクション(40,000-50,000)の一部です。このヒト胚子・胎児標本コレクションは1961-1974年に収集されたもので、世界で最大規模のコレクションです。
language: en
publisher: 筑波大学
  type: Organization
  label: University of Tsukuba @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/5759548
references: http://rdf.ncbi.nlm.nih.gov/pubmed/594909
references: http://rdf.ncbi.nlm.nih.gov/pubmed/7114091
landing page: http://www.bk.tsukuba.ac.jp/~mrlab/human_embryos/index.html
theme: T0014
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00823
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ここカラダ 病気辞典

ここカラダ 病気辞典
type: Dataset
description: 病気の詳細な情報を提供しています。キーワードや病気の種類、50音順から病気を検索できます。
language: ja
publisher: 株式会社リクルートドクターズキャリア
  type: Organization
  address country: 日本
landing page: http://www.cocokarada.jp/disease/index.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00824
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ここカラダ お薬辞典

ここカラダ お薬辞典
type: Dataset
description: 処方薬の主成分名、製薬会社、薬価、写真、主な作用、副作用、服用上の注意を調べることができます。 製品名や成分名から検索できます。成分名を入力して検索をすると、同一成分を主成分とする薬の一覧が表示されます。
language: ja
publisher: 株式会社リクルートドクターズキャリア
  type: Organization
  address country: 日本
landing page: http://www.cocokarada.jp/medicine/index.html
theme: T0012
theme: T0030
status: 稼動中

nbdc00825
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: サイバーデンタル

サイバーデンタル
type: Dataset
description: 歯科情報ポータルサイト。歯の基礎情報から治療情報まで分かりやすく説明しています。
language: ja
publisher: 株式会社Cyberデジタル
  type: Organization
  address country: 日本
landing page: http://www.cyber-dental.com/index.html
theme: T0015
theme: T0031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 稼動中

nbdc00826
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 食品機能成分データベース

食品機能成分データベース
type: Dataset
description: 五十音順食品素材一覧表で、学名、成分、機能性成分、機能性、科名、利用部位、使用上の注意などを一覧することができます。 リンクのある食材はさらにその機能性、相互作用などのエビデンス（科学的根拠の要約と出典など）が掲載されています。食品の機能や安全性を評価する時に参照して下さい。
language: ja
publisher: 北海道医療大学
  type: Organization
  address country: 日本
landing page: http://www.hoku-iryo-u.ac.jp/~wadakg/database/dbindex.html
theme: T0014
theme: T0015
theme: T0012
theme: T0010
theme: T0011
theme: T0030
status: 稼動中

nbdc00827
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 内科診断検査アクセス

内科診断検査アクセス
type: Dataset
description: 本システムは電子教科書の将来像を探るため、「内科診断検査アクセス: 日本医事新報社(1989.5.20.)」を電子化したものです。症候編、疾患編、臨床検査編の3部構成です。
language: ja
publisher: 北里大学 医学部
  type: Organization
  address country: 日本
landing page: http://bme.ahs.kitasato-u.ac.jp:8080/docs/qrs/imd/index.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 休止

nbdc00828
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ウイルス図鑑

ウイルス図鑑
type: Dataset
description: ウイルスの感染と病気、粒子構造、遺伝子に関する解説と、電子顕微鏡（一部）の写真を提供しています。ウイルスの分類法は、国際ウイルス分類委員会（The International Comittee on Taxonomy of Viruses: ICTV）によって定められているので、このウイルス図鑑も、ICTVによる分類（7th Report of the ICTV: M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop eds., Academic Press, 2000）に従って各項目を立てています。
language: ja
publisher: 法政大学
  type: Organization
  address country: 日本
landing page: http://protist.i.hosei.ac.jp/virus/top.html
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0022
theme: T0029
status: 稼動中

nbdc00829
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 歯チャンネル88

歯チャンネル88
type: Dataset
description: 歯科医師が作った歯科総合情報サイトです。日本の歯科医療をより良くすることを目的としています。
language: ja
publisher: 株式会社ファンクション・ティ
  type: Organization
  address country: 日本
landing page: http://www.ha-channel-88.com/
theme: T0015
theme: T0030
status: 稼動中

nbdc00830
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: お薬110番

お薬110番
type: Dataset
description: ハイパー薬辞典、副作用リスト、禁忌薬 と 警告、薬価サーチなど、市販薬に関する様々な情報を調べることができます。
language: ja
publisher: 医薬品情報研究会
  type: Organization
  address country: 日本
landing page: http://www.jah.ne.jp/~kako/
theme: T0012
theme: T0030
status: 稼動中

nbdc00831
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Proteopedia

nbdc00831
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Proteopedia

Proteopedia
type: Dataset
description: Proteopedia is an interactive database of 3D structures of biological molecules. The database contains high-quality structures as well as explanatory articles for all proteins in PDB, as well as articles about several diseases and classes of proteins. The database is in wiki form and supports community editing. @en
description: タンパク質、リボ核酸、DNA、および他の分子の3D百科事典です。フリーユーザーアカウントで誰でも記事を編集できます。 Proteopediaの目的は、興味のあるタンパク質やその他の分子、科学物質に関する情報を共有し、議論するサイエンスコミュニティのフォーラムとして機能することです。
language: en
publisher: Weizmann Institute of Science
  type: Organization
  address country: Israel @en
  address country: イスラエル
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18673581
landing page: http://www.proteopedia.org/
theme: T0022
theme: T0007
theme: T0005
status: Active @en
status: 稼動中

nbdc00832
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-02-06
source: Integbio Database Catalog
primary topic: Protein Quaternary Structure

nbdc00832
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-06
source: Integbio Database Catalog
primary topic: Protein Quaternary Structure

Protein Quaternary Structure
type: Dataset
description: Protein Data Bank (PDB)のデータを基に、ホモおよびヘテロの推定蛋白質会合体、複合体の立体構造データを得ることができ、分子間相互作用を立体的に理解することができます。2009年8月から新しいデータの追加を停止しました。将来的にサービスが中止される予定です。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
distribution: Distribution
  rights: terms-of-use
  access URL: http://www.ebi.ac.uk/pdbe/pisa/pi_download.html
landing page: http://www.ebi.ac.uk/pdbe/pqs/
theme: T0022
theme: T0007
status: 運用終了
status: Closed @en

nbdc00833
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 日本語版ウィキぺディア

日本語版ウィキぺディア
type: Dataset
description: フリー百科事典『ウィキペディア（Wikipedia）』の日本語版です。ウィキペディア (Wikipedia) はウィキメディア財団が運営するオンライン百科事典です。コピーレフトなライセンスの下、誰もが無料で自由に編集に参加できます。世界各国の言語で展開されています。
language: ja
publisher: ウィキメディア財団
  type: Organization
  address country: アメリカ合衆国
landing page: http://ja.wikipedia.org/wiki/%E3%83%A1%E3%82%A4%E3%83%B3%E3%83%9A%E3%83%BC%E3%82%B8
theme: T0030
status: 稼動中

nbdc00834
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Gene Wiki

nbdc00834
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Gene Wiki

Gene Wiki
type: Dataset
description: geneWiki is a database of gene and protein function. The database contains articles for all human genes featuring links to and from Wikipedia. Users can search, browse, and participate in editing of articles. @en
description: Wikipediaの仕組みを用いてヒトの遺伝子やタンパク質に共同でアノテーションを付与することを目的としています。
language: en
publisher: ウィキメディア財団
  type: Organization
  label: Wikimedia Foundation Inc. @en
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18613750
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22165947
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22075991
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19755503
landing page: http://en.wikipedia.org/wiki/Portal:Gene_Wiki
theme: T0001
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00835
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: VIPERdb

nbdc00835
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: VIPERdb

VIPERdb
type: Dataset
description: Protein Data Bank (PDB)から収集した正二十面体ウイルスキャプシド構造のデータベースです。289種類のウイルス由来の全てのキャプシドは単一の二十面体配向性をもち、異なる構造間での比較を容易にしています。
description: VIPERdb is a database of viral capsid structures. The database contains structural x-ray crystallographic and cryo-EM data on the structures of 350 icosahedral viruses. Structures are interactive and available for download, and can be searched by PDB ID or virus name. @en
language: en
publisher: The Scripps Research Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18981051
landing page: http://viperdb.scripps.edu/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: T0022
theme: T0029
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00836
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MedlinePlus

nbdc00836
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: MedlinePlus

MedlinePlus
type: Dataset
description: 米国NLMで評価された信頼できる健康・医療関連の情報源を提供し、世界中で消費者健康情報源として利用されています。コンテンツは毎日更新されています。
description: MedlinePlus is the patient-forward site of the US NIH National Library of Medicine. The database contains information on a variety of health topics, from diseases to drugs, presented for the general public. The database is curated and updated by NLM staff and seeks to provide users with straightforward, unbiased explanations and information. @en
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.nlm.nih.gov/medlineplus/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: Active @en
status: 稼動中

nbdc00837
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BodyParts3D

nbdc00837
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-05-01
source: Integbio Database Catalog
primary topic: BodyParts3D

BodyParts3D
type: Dataset
description: 解剖学用語が示す人体の部品（臓器、器官）の位置と形状を３次元人体モデルで記述したデータベースです。人体３次元モデルが無償利用できるのが最大の特徴です。臓器の３次元的位置や形状を確認する電子アトラスとしてだけでなく、人体シミュレーションやデータマッピングなどの入力データとして再利用可能です。BodyParts3Dの臓器を任意の視点やズーム、色、透過度で表示した解剖図譜を手軽に作成できるツール、アナトモグラフィーも公開しています。
description: BodyParts3D is a database for anatomy representing shapes and positions of human body parts by 3D models. BodyParts3D contains 3D models of an adult human male labeled with anatomical terms. This database features a web based tool; Anatomography, which enables a user to create an anatomical image of human body parts and save it as a URL. A user can also redistribute a part or whole of the data from this database. @en
language: ja
language: en
publisher: 情報・システム研究機構 ライフサイエンス統合データベースセンター
  type: Organization
  label: Research Organization of Information and Systems Database Center for Life Science @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18835852
landing page: http://lifesciencedb.jp/bp3d/?lng=en
landing page: http://lifesciencedb.jp/bp3d/?lng=ja
theme: T0014
theme: T0022
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00838
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-16
source: Integbio Database Catalog
primary topic: Budding yeast cDNA sequencing project

nbdc00838
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Budding yeast cDNA sequencing project

Budding yeast cDNA sequencing project
type: Dataset
description: Vector-capping methodによる出芽酵母完全長cDNAライブラリーから作成した完全長cDNAクローンの5'末端配列、及びPhredソフトウェアによる配列クオリティ値を格納しています。
description: This database contains DNA sequence information for S. cereviseae. Sequences were obtained from a vector-capped cDNA library. The sequence data is available for download. @en
language: en
publisher: 東京大学 大学院理学系研究科 生物化学専攻
  type: Organization
  label: The University of Tokyo Graduate School of Science Department of Biophysics and Biochemistry @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17101987
landing page: http://itolab.cb.k.u-tokyo.ac.jp/GCap/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0021
theme: T0002
status: Active @en
status: 稼動中

nbdc00839
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: AcEST

nbdc00839
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: AcEST

AcEST
type: Dataset
alternative: Adiantum capillus-veneris EST
description: ホウライシダ(Adiantum capillus-veneris)のEST配列データ約3万件に2次情報を追加したデータベースです。これまで、様々な植物ゲノム解析が進められていますが、陸上植物(種子、シダ、コケ植物)の中でシダ植物のゲノムに関する研究は発展していません。そこで、光形態形成に関する研究に用いられてきたホウライシダ(Adiantum capillus-veneris)をシダのモデル植物として位置づけるために、 EST配列の解析を行いました。
description: AcEST is a database of fern EST data. The database contains sequences expressed in Adiantum capillus-veneris that have been collected from four different sequence libraries. Orthology to A. thaliana is predicted, BLAST searches can be performed, and data is available for download. @en
language: en
publisher: 首都大学東京
  type: Organization
  label: Tokyo Metropolitan University @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15940394
distribution: Distribution
  description: download.html
  description: README e.html
  rights: lic.html
  access URL: http://togodb.dbcls.jp/acest/
landing page: http://togodb.dbcls.jp/acest
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/13818
theme: T0002
status: Active @en
status: 稼動中

nbdc00840
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-01-15
source: Integbio Database Catalog
primary topic: CSDB

nbdc00840
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-01-15
source: Integbio Database Catalog
primary topic: CSDB

CSDB
type: Dataset
alternative: Carbohydrate Structure Database
description: マニュアルキュレートされた天然糖類のデータベースです。原核生物、植物、菌類、数種の原生生物のグルカン、グライコポリマーについて、糖鎖構造、文献、分類、NMRデータ、関連情報を提供しています。微生物については報告された糖鎖構造の約90%を網羅しています。2017年時点で、~7,000の文献で報告された~9,000の生物種に由来する~19,000の構造と~8,000のNMRスペクトル情報を保持しています。サイトでは他にもGlycosyltransferase databaseや1D and 2D NMRシミュレーション、NMRをベースとした自動構造解析、糖質をベースとした生物分類、生物分類に対する構造フラグメントの分布などの様々なサービスが提供されています。全てのデータはRDFで出力することができます。
description: This is a regularly updated manually curated database for natural carbohydrates. It aims at high-quality content and provides structural, bibliographic, taxonomic, NMR-spectroscopic and other related information on prokaryotic, plant and fungal glycans, glycopolymers, and glycoconjugates. The coverage in bacterial domain (and soon expected in fungal domain) is about 90% of all published structures. As of 2017, the database contains ~19000 structures from ~9000 organisms published in ~7000 papers, and ~8000 NMR spectra. Besides data, CSDB serves as a platform for numerous glyco-services, such as glycosyltransferase subdatabase, 1D and 2D NMR simulation, automated NMR-based structure elucidation, carbohydrate-based taxon clustering, distribution of structural fragments against taxa, and other. All data can be exported as RDF feeds. @en
language: en
publisher: Russian Academy of Sciences
  type: Organization
  address country: Russian Federation @en
  address country: ロシア連邦
references: http://rdf.ncbi.nlm.nih.gov/pubmed/26087011
references: http://rdf.ncbi.nlm.nih.gov/pubmed/24680503
references: http://rdf.ncbi.nlm.nih.gov/pubmed/26337239
references: http://rdf.ncbi.nlm.nih.gov/pubmed/28011601
references: http://rdf.ncbi.nlm.nih.gov/pubmed/262861940
references: http://rdf.ncbi.nlm.nih.gov/pubmed/29092007
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21155523
references: http://rdf.ncbi.nlm.nih.gov/pubmed/27227420
landing page: http://csdb.glycoscience.ru
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: T0023
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33090
theme: T0008
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
status: Active @en
status: 稼動中

nbdc00841
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PubMeth

nbdc00841
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PubMeth

PubMeth
type: Dataset
alternative: Reviewed methylation database in cancer @en
description: This is a database of DNA methylation in cancer. The data were collected from literature by automated textmining, and then, manually curated and annotated. Users can find methylation frequency of each gene in various type of cancer. It is allowed users to search the data by gene and by cancer type. @en
description: 各種がんにおける遺伝子のメチル化頻度を調べることができます。現在のエントリーは5,000以上で、1,000件以上の文献から自動テキストマイニングにより抽出した情報を元に、キュレーションとアノテーション付与をしています。遺伝子側からの検索とがんの種類からの検索ができます。
language: en
publisher: Ghent University
  type: Organization
  address country: ベルギー
  address country: Belgium @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17932060
landing page: http://www.pubmeth.org/
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00842
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: 3D Lectin Database

nbdc00842
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: 3D Lectin Database

3D Lectin Database
type: Dataset
description: 各エントリーは由来（動物、植物、藻類、菌類、微生物、ウイルス）ごとに分類されており、さらにレクチンのタイプ（構造ファミリー）から辿ることができます。PDBの立体構造や結合する糖鎖構造、文献情報が収集されています。
description: Lectin 3D is a database of lectin crystal structures. The database contains PDB structures of lectins from all kingdoms of life as solved by x-ray crystallography. Users can browse by kingdom and protein class using comprehensive drop-down lists. Advanced search is also available. @en
language: en
publisher: Centre de Recherches sur les Macromolecules Vegetales
  type: Organization
  address country: France @en
  address country: フランス
landing page: http://lectin3d.cermav.cnrs.fr/search.php
theme: T0023
theme: T0022
theme: T0010
theme: T0008
theme: T0007
status: Active @en
status: 稼動中

nbdc00843
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: YMP

nbdc00843
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: YMP

YMP
type: Dataset
alternative: Yeast Mitochondrial Proteome 2-D database @en
description: YMP is a database of yeast mitochondria proteins. The database contains information on proteins determined and confirmed using several different proteomic methods, as well as experimental datasets following environmental manipulation. Several 2D-PAGE experiments are represented. @en
description: 酵母の発酵と呼吸に関するミトコンドリアプロテオーム解析結果 - 2次元電気泳動画像、同定されたタンパク、および、その他のミトコンドリアデータベースのリンク集が掲載されています。
language: en
publisher: University of Oulu
  type: Organization
  address country: フィンランド
  address country: Finland @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14597615
landing page: http://www.biochem.oulu.fi/proteomics/ymp.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0029
theme: T0007
theme: T0013
status: 休止
status: Inactive @en

nbdc00844
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 家庭の中医学

家庭の中医学
type: Dataset
description: 漢方の情報サイト。中医漢方処方解説、中医生薬解説、症状の解説と治療、中医学用語解説が掲載されています。
language: ja
publisher: Organization
  address country: 日本
landing page: http://www.sm-sun.com/family/index.htm
theme: T0015
theme: T0012
theme: T0030
status: 稼動中

nbdc00845
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-11-03
source: Integbio Database Catalog
primary topic: おもしろい糸状菌 （アーカイブ）

おもしろい糸状菌 （アーカイブ）
type: Dataset
description: カビはおもしろい形の胞子を作ったり、おもしろい形のキノコを作ったりします。 色々なカビの顕微鏡写真をご紹介しますので楽しんで下さい。 現在、国立研究開発法人農業・食品産業技術総合研究機構 北海道農業研究センターによるオリジナルサイトの運用は終了しました。引き続き生命科学系データベースアーカイブから「おもしろい糸状菌」をご利用いただけます。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 北海道農業研究センター
  type: Organization
  address country: 日本
landing page: http://dbarchive.biosciencedbc.jp/jp/marine-fungi/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: T0029
status: 稼動中

nbdc00846
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: JUMOKU

JUMOKU
type: Dataset
alternative: 日本産樹木検索
description: 日本産樹木508種（針葉樹を除く）の検索ができます。
language: ja
publisher: 宮城教育大学
  type: Organization
  address country: 日本
landing page: http://ugawalab.miyakyo-u.ac.jp/jumoku/query.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0019
status: 稼動中

nbdc00847
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-29
source: Integbio Database Catalog
primary topic: アサガオ類画像データベース

nbdc00847
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-29
source: Integbio Database Catalog
primary topic: アサガオ類画像データベース

アサガオ類画像データベース
type: Dataset
title: Morning Glories Database @en
alternative: MORNING GLORIES DATABASE
description: 日本の伝統的な園芸花で多数の遺伝子突然変異体をもつアサガオを中心に、近縁種およびアサガオとの種間雑種およびヒルガオ科の園芸植物の画像を集めたデータベースです。「画像ライブラリィ」の他、「アサガオ入門 講談社パノラマ図鑑 アサガオ」の紹介、「アサガオ百科」があります。「アサガオ百科」ではアサガオについての分類学、生理学、アサガオ野生・地方系統（世界各地）など様々な視点からアサガオについて説明されています。
description: Morning Glories Database is a collection about the mutants of the morning glory (Ipomoea nil), closely related species and interspecific hybrids. It also includes cultivars of Convolvulaceae. Each entry contains image, relative description and references. It also provides lists of related books and articles in various fields, along with lists of older literature and Web links concerning the morning glory. @en
language: ja
language: en
publisher: 法政大学
  type: Organization
  label: Hosei University @en
  address country: Japan @en
  address country: 日本
landing page: http://protist.i.hosei.ac.jp/Asagao/Yoneda_DB/E/menu.html
landing page: http://protist.i.hosei.ac.jp/Asagao/Yoneda_DB/J/menu.html
theme: T0016
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/35883
theme: T0029
theme: T0030
status: Active @en
status: 稼動中

nbdc00848
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-15
source: Integbio Database Catalog
primary topic: 東京都植物誌デジタル版

nbdc00848
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-10-11
source: Integbio Database Catalog
primary topic: 東京都植物誌デジタル版

東京都植物誌デジタル版
type: Dataset
title: Flora of Tokyo @en
description: 東京都に自生する維管束植物のさく葉標本および生態写真のデータベースです。首都大学東京・牧野標本館に収蔵されているさく葉標本の画像や学名、採集地などの標本情報、および生態写真を収録しています。属名、学名、和名、採集年による検索が可能です。また、盗掘が心配される希少種や絶滅危惧種等を除き、標本の採集地や生態写真の撮影地をデジタル地図上で閲覧することもできます。検索結果はCSVまたはXML形式によるダウンロードが可能です。
description: Flora of Tokyo is a database of herbarium and pictures of vascular plants growing naturally in Tokyo, Japan. It is now available only in Japanese, although users can search by scientific names. @en
language: ja
publisher: 首都大学東京
  type: Organization
  label: Tokyo Metropolitan University @en
  address country: Japan @en
  address country: 日本
landing page: http://tmunh.jp/syutodai_dev/index.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0029
theme: T0019
status: Active @en
status: 稼動中

nbdc00849
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TOBIKOBACHI

nbdc00849
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TOBIKOBACHI

TOBIKOBACHI
type: Dataset
alternative: Image Database of Encyrtid Wasp Collection
description: TOBIKOBACHI is the image database of Japanese encyrtid wasps based on the collection of Dr. Tetsusaburo Tachikawa. Each record consists of 16 items including images (general habitus and various parts of the body), scientific names (family, genus and species), the Japanese name, distribution data and so on. Users can search species by keywords from these items. Search results show scientific names, the Japanese names and links to display retrieved records. @en
description: 日本産トビコバチ類画像データベースTOBIKOBACHIは、立川哲三郎博士のコレクションに基づいた日本産トビコバチに関する、画像を含めた種情報のデータベースです。各レコードは、科名、属名、種名、和名、分布、模式産地、模式標本の所蔵機関、原記載の出典、同物異名、発生期、寄主、天敵、文献、画像(全体図と部分図)等16項目を収録しています。
language: ja
language: en
publisher: 九州大学 大学院農学研究院
  type: Organization
  label: Kyushu University Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/tobikobachi/index-e.html
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/tobikobachi/index-j.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/29051
theme: T0029
theme: T0019
status: Active @en
status: 稼動中

nbdc00850
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HANABACHI

nbdc00850
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HANABACHI

HANABACHI
type: Dataset
alternative: Image Database of Japanese Bees
description: HANABACHI is an image database covering all the species of the Japanese bees. The data on family Andrenidae, the genera Nomada and Lasioglossum are now opened to the public. This website explains keys to identify families and genera of the Japanese bees. Each record consists of 18 items including scientific names, the Japanese name, taxonomical information (sex, locality and depository of the type, etc) and total/partial images. Users can search species by keywords from these items. @en
description: 日本産ハナバチ類画像データベース(HANABACHI)は、 日本産の全種のハナバチに関する、画像を含めた種情報のデータベースです。 各レコードには、科名、属名、種名、和名、分布、模式産地、模式標本の所蔵機関、 原記載の出典、同物異名、種の説明、訪 花植物、文献、画像(全体図と部分図)、 分布図等を収録しています。
language: ja
language: en
publisher: 九州大学 大学院農学研究院
  type: Organization
  label: Kyushu University Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/hanabachi/index-j.html
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/hanabachi/
theme: T0014
theme: T0029
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7460
status: Active @en
status: 稼動中

nbdc00851
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ELKUType

nbdc00851
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ELKUType

ELKUType
type: Dataset
alternative: Type Specimen Collection Preserved in the Entomological Laboratory, Kyushu University
description: ELKUType is a database of information on type specimens preserved in the Entomological Laboratory, Kyushu University (ELKU). ELKUType is based on the holotypes, which are used in the original description for establishment of a new taxon. Each record consists of 17 items including a image of the holotype, scientific names (family, genus and species), the Japanese name and distribution data. Users can search records by keywords from these items. @en
description: ELKUTypeは、九州大学農学研究院昆虫学教室所蔵のタイプ標本情報のデータベースです。タイプ(模式標本)は、新種等のタクソン(分類単位)が設立され、記載命名された時に用いられた標本で、その中の1個体をホロタイプ(完模式標本、holotype)、同時に用いられたこれ以外の標本で指定されたものはパラタイプ(副模式標本、paratype)と呼んでいます。 ELKUTypeは主としてホロタイプに関するデータベースで、各レコードには、学名、和名、目名、科名、原著者、命名年、原記載の出典、タイプの種類と雌雄、タイプ産地、国、保存形式、パラタイプの有無、画像等19項目を収録しています。
language: ja
language: en
publisher: 九州大学 大学院農学研究院
  type: Organization
  label: Kyushu University Faculty of Agriculture @en
  address country: Japan @en
  address country: 日本
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/elkutype/index-j.html
landing page: http://konchudb.agr.agr.kyushu-u.ac.jp/elkutype/
theme: T0014
theme: T0029
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/6960
status: Active @en
status: 稼動中

nbdc00852
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2013-11-26
source: Integbio Database Catalog
primary topic: 瀬戸内海海藻類標本データベース

瀬戸内海海藻類標本データベース
type: Dataset
description: 神戸大学内海域環境教育研究センター（兵庫県津名郡淡路町）に保存されている海藻類標本をデータベース化しました。センターに保存された標本の中から、代表的な標本約529点（228種）の画像と採集情報を公開しています。
language: ja
publisher: 神戸大学
  type: Organization
  address country: 日本
landing page: http://www.lib.kobe-u.ac.jp/products/algae/index.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33849
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2763
theme: T0020
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2870
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33103
status: 稼動中

nbdc00853
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-15
source: Integbio Database Catalog
primary topic: 藻類画像データ

藻類画像データ
type: Dataset
description: この画像データベースでは藻類の分類名、学名、画像を提供しています。 筑波大学生物学類および全国の生物学科の学生諸氏の藻類への理解を助けると同時に，全国の大学および中高等学校で生物学教育に携わる先生方が利用できる画像資料の提供をめざしています。
language: ja
publisher: 筑波大学 生物科学系
  type: Organization
  address country: 日本
landing page: http://www.biol.tsukuba.ac.jp/~ken/phycological_images/phycological_images.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2806
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2797
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33634
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2762
theme: T0029
theme: T0019
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1117
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/304574
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/38258
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33630
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33103
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1214
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3152
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3166
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2830
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/29198
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3038
status: 稼動中

nbdc00854
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 相模湾生物データベース

相模湾生物データベース
type: Dataset
description: 相模湾で採取された水生生物のデータベースです。画像と分類、採取情報が収集されています。
language: ja
publisher: 東京大学 大学院理学系研究科附属臨海実験所
  type: Organization
  address country: 日本
landing page: http://www2.mmbs.s.u-tokyo.ac.jp/SBnet/database.htm
theme: T0014
theme: T0029
status: 休止

nbdc00855
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 中国薬草古典「証類本草」データベース

中国薬草古典「証類本草」データベース
type: Dataset
description: 「証類本草」は中国で１世紀頃に創刊された薬草古典『神農本草経』を基本とし、その後収録項目を追加しながら12世紀頃までに31巻発刊された最も権威がある薬物書です。 収載品目は1,700種類で、薬用植物・動物・鉱物、さらには食用とされる果実類、米穀類、野菜類、獣禽類などの効能が、形態、産地などとともに時代毎に収載されています。 医薬学及び植物学方面の内容の正確さや情報量の豊富さ、生薬の基源の歴史的変遷をたどることができ、薬効のみならず食効に関する情報が提供できるなどの点で、漢方資料として極めて重要な価値を有しています。 この古典を我が国として初めて翻訳・データベース化しました。
language: ja
publisher: 富山大学
  type: Organization
  address country: 日本
landing page: http://ethmed.u-toyama.ac.jp/honzou/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0030
theme: T0012
status: 稼動中

nbdc00856
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: DBGET Search - DGENES

nbdc00856
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: DBGET Search - DGENES

DBGET Search - DGENES
type: Dataset
description: KEGG DGENESは、公共データベースからドラフトゲノム中の遺伝子情報を抽出し作成したデータベースです。 多くのデータがKEGG GENES database （http://integbio.jp/dbcatalog/record/nbdc00532） に移行されたため、京都大学化学研究所附属バイオインフォマティクスセンターによるオリジナルサイト （http: //www.genome.jp/dbget-bin/www_bfind?dgenes） の運用は終了しました。
description: DgeneS is a database of genes from draft genome sequences, including genes from sequencing projects not yet completed. The database can be searched by gene name, ID, or keyword and returns information on taxonomy, protein and nucleic acid sequence, and links to related databases. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/dbget-bin/www_bfind?dgenes
theme: T0021
theme: T0001
status: 運用終了
status: Closed @en

nbdc00857
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: DBGET Search - EGENES

nbdc00857
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: DBGET Search - EGENES

DBGET Search - EGENES
type: Dataset
description: EgeneS is a database of EST sequences and genes identified by sequencing expressed genes. The database can be searched by gene name, ID, or keyword and returns information on taxonomy, protein and nucleic acid sequence, and links to related databases. @en
description: KEGG EGENESは、dbESTよりESTコンティグ遺伝子を自動抽出して作成したデータベースです。
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
landing page: http://www.genome.jp/dbget-bin/www_bfind?egenes
theme: T0021
theme: T0002
status: Active @en
status: 稼動中

nbdc00858
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-10-01
source: Integbio Database Catalog
primary topic: KEGG MGENES

nbdc00858
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-09-30
source: Integbio Database Catalog
primary topic: KEGG MGENES

KEGG MGENES
type: Dataset
description: 大規模な環境シーケンシング研究から得られた遺伝子情報のコレクションです。 メタゲノムサンプル由来の配列、機能、環境パラメータをパスウェイデータベースに基づいてリンクしています。また、メタゲノムから配列クラスタリング法を用いて生成されたリファレンス遺伝子カタログ（OM-RGC、IGC）も提供しています。メタゲノムサンプルのブラウズやBLAST検索が可能です。
description: MGENES is a database of genes characterized by metagenomic sequencing and environmental sources. The database can be searched by gene name, ID, or keyword and returns information on taxonomy, protein and nucleic acid sequence, and links to related databases. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  description: README
  access URL: ftp://ftp.genome.jp/pub/db/mgenes/
landing page: https://www.genome.jp/mgenes/
theme: T0021
theme: T0020
theme: T0026
theme: T0001
status: Active @en
status: 稼動中

nbdc00860
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: KEGG RCLASS

nbdc00860
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: KEGG RCLASS

KEGG RCLASS
type: Dataset
alternative: KEGG Reaction Class
description: KEGG RCLASSは、KEGG RPAIRのメインペアを化学構造変化パターンで定義した化学反応クラスです。RC番号を識別子としています。
description: KEGG RCLASS is a database of enzymatic reactions as organized by the KEGG system and contains an expandable list of all reaction types organized hierarchically. A search function for reaction class is also available. Users can obtain the compounds and enzymes involved for each specified reaction pathway. @en
language: en
publisher: 京都大学 化学研究所 附属バイオインフォマティクスセンター
  type: Organization
  label: Kyoto University Institute for Chemical Research Bioinformatics Center @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: legal.html
  access URL: http://www.genome.jp/kegg-bin/get_htext?br08204.keg
landing page: http://www.genome.jp/kegg-bin/get_htext?br08204.keg
theme: T0023
theme: T0026
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00861
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Visual database of Primatology (サル学画像データベース)

Visual database of Primatology (サル学画像データベース)
type: Dataset
description: 霊長類の頭蓋骨の写真を集めたページです。 前、後、上、下、右、左の方向を決定すると、写真の一覧が表示されます。
language: ja
publisher: 京都大学 霊長類研究所
  type: Organization
  address country: 日本
landing page: http://www.pri.kyoto-u.ac.jp/databases/gazodb/honemenu.shtml
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9443
theme: T0029
status: 稼動中

nbdc00862
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: みんなのバイオ学園

みんなのバイオ学園
type: Dataset
description: 毎日の生活に欠かすことのできない「バイオテクノロジー」を、子どもから大人まで楽しく学ぶことができます。基礎、歴史、農作物、医療、倫理などの授業形式のコースや、e-ラーニングを選ぶことができます。
language: ja
publisher: 財団法人バイオインダストリー協会
  type: Organization
  address country: 日本
landing page: http://www.jba.or.jp/top/bioschool/index.html
theme: T0030
status: 稼動中

nbdc00863
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: 無脊椎動物図鑑

nbdc00863
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-26
source: Integbio Database Catalog
primary topic: 無脊椎動物図鑑

無脊椎動物図鑑
type: Dataset
title: VARIOUS MARINE INVERTEBRATES @en
description: VARIOUS MARINE INVERTEBRATES is a visual dictionary of marine invertebrate species constructed by Research Institute of Marine Invertebrates (RIMI). This visual dictionary covers information on 20 phyla of marine invertebrates. Each webpage corresponds to one phylum, and contains examples of species with photos, locations of the photos, the Japanese names and scientific names (phylum, order, family, genus, species, etc). @en
description: 最近では、深海探査その他により、未知の無脊椎動物が相次いで発見されており、分類の新しい動物門を増やしています。 無脊椎動物図鑑は古典的な分類に最近の知見を加味したものです。
language: ja
publisher: 公益財団法人水産無脊椎動物研究所
  type: Organization
  label: Research Institute of Marine Invertebrates @en
  address country: Japan @en
  address country: 日本
landing page: http://www.rimi.or.jp/dobutumenu/
theme: T0014
theme: T0029
theme: T0027
status: Active @en
status: 稼動中

nbdc00864
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 遺伝学電子博物館

遺伝学電子博物館
type: Dataset
description: 遺伝学の歴史、進化と遺伝、分子遺伝学などの学術情報をビジュアル的に分かりやすく解説しています。マルチメディア資料館では、RNAポリメラーゼやリボゾームの3Dモデルを手元で自由に動かしたり分解して見ることができます。
language: ja
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  address country: 日本
landing page: http://www.nig.ac.jp/museum/msg.html
theme: T0030
status: 稼動中

nbdc00865
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-03-29
source: Integbio Database Catalog
primary topic: SciencePortal

SciencePortal
type: Dataset
description: 最新の科学技術情報を伝えるポータルサイト。研究開発や調査に役立つデータベースをご紹介します。
language: ja
publisher: 国立研究開発法人科学技術振興機構
  type: Organization
  address country: 日本
landing page: http://scienceportal.jst.go.jp
theme: T0031
theme: T0030
status: 稼動中

nbdc00866
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-07-24
source: Integbio Database Catalog
primary topic: 海棲哺乳類図鑑

nbdc00866
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-07-24
source: Integbio Database Catalog
primary topic: 海棲哺乳類図鑑

海棲哺乳類図鑑
type: Dataset
title: Illustrated Guide of Marine Mammals @en
description: This database is a collection of illustrations and information about Marine mammals. It contains an illustration of body, photographs of head bone, scientific name, classification, feature and habit, etc. Each record also links to Stranding Record(s) in Japan. The skull image database of marine mammals is incorporated into the Illustrated Guide of Marine Mammals. @en
description: 海棲哺乳類の画像と、分類や特徴、大きさなどの情報を公開しています。日本国内のストランディング情報にもリンクしています。「海棲哺乳類頭骨画像データベース」も「海棲哺乳類図鑑」に統合されました。
language: ja
language: en
publisher: 国立科学博物館
  type: Organization
  label: National Museum of Nature and Science, Tokyo @en
  address country: Japan @en
  address country: 日本
landing page: http://www.kahaku.go.jp/english/research/db/zoology/marmam/pictorial_book/index.html
landing page: http://www.kahaku.go.jp/research/db/zoology/marmam/pictorial_book/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9639
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9775
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9702
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9709
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9721
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/169417
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/29136
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9705
status: Active @en
status: 稼動中

nbdc00867
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EMBRYS

nbdc00867
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: EMBRYS

EMBRYS
type: Dataset
alternative: Embryonic Gene Expression Database for Biomedical Research Source @en
description: EMBRYS is a database of mouse in situ hybridizations. The database contains images of gene expression at three time points in embryonic development, annotated by organ, which can be explored using an image viewer. Data are available for download. @en
description: マウス胚の約1,600の転写関連遺伝子発現をホールマウントin situハイブリダイゼーション法（WISH）によって可視化し、発生段階に応じた遺伝子発現を捉えた3次元的実体顕微鏡画像データベースです。
language: en
publisher: 国立成育医療研究センター研究所
  type: Organization
  label: National Medical Center for Children and Mothers Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20059953
landing page: http://embrys.jp
theme: T0014
theme: T0024
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0002
status: 休止
status: Inactive @en

nbdc00868
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-12
source: Integbio Database Catalog
primary topic: マメハモグリバエ寄生蜂の図解検索

マメハモグリバエ寄生蜂の図解検索
type: Dataset
description: マメハモグリバエLiriomyza trifolii (BURGESS)は1990年頃から侵入害虫として日本で問題になり、現在までに在来の寄生蜂が少なくとも28種確認されています。本データベースでは、これらマメハモグリバエ寄生蜂の分類と簡単な説明、画像を提供しています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 北海道農業研究センター
  type: Organization
  address country: 日本
landing page: http://cse.naro.affrc.go.jp/konishi/main.htm
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/303412
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/198433
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7402
theme: T0030
theme: T0014
status: 運用終了

nbdc00869
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-22
source: Integbio Database Catalog
primary topic: 育成品種紹介

育成品種紹介
type: Dataset
description: 日本国内において育成された果樹品種について樹種名、品種名、登録状況、育成場所、品種の説明等と関係画像を収集・蓄積し、データベース化し、提供しています。
language: ja
language: en
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 果樹研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/nifts/kih/index.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3754
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/283210
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4442
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2706
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3767
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/103480
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/35925
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3602
theme: T0029
status: 稼動中

nbdc00870
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: EPFDB

nbdc00870
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: EPFDB

EPFDB
type: Dataset
alternative: Entomopathogenic Fungi Database @en
alternative: Entomopathogenic Fungi Database (昆虫病原糸状菌データベース)
description: 健全な昆虫にとりつき、昆虫体内に侵入後その昆虫を死に至らしめる昆虫病原糸状菌類のデータベースです。宿主に寄生した状態の写真や培地での増殖写真、顕微写真などが収録されています。属名、和名、種名のリストから検索できるほか、宿主からのリスト検索が可能です。菌種のシノニム（同種異名）リストも掲載しています。
description: This is a database for entomopathogenic fungi, which attack healthy insects and ultimately lead to their death. Users can view photos of the pathogen after parasitizing the host, as well as images of proliferation in media and microscopic images. Searches can be performed by genus name, Japanese common name, and species list, as well as host species. Synonyms for the pathogen are also shown. All rights for data and photos in this site are reserved. @en
language: ja
language: en
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 果樹研究所
  type: Organization
  label: National Agriculture and Food Research Organization,National Institute of Fruit Tree Science @en
  address country: Japan @en
  address country: 日本
landing page: http://www.naro.affrc.go.jp/org/fruit/epfdb/
landing page: http://www.naro.affrc.go.jp/org/fruit/epfdb/Ebun/Eindex.htm
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: T0015
theme: T0029
status: Active @en
status: 稼動中

nbdc00871
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 作物見本園

作物見本園
type: Dataset
description: 国立研究開発法人農業・食品産業技術総合研究機構・作物研究所の資源作物見本園で栽培された作物もしくは現在栽培中の作物の様々な写真とそれらの作物についての簡単な解説を収めたデータベースです。「掲載作物名一覧」や「見本園マップ」からそれぞれの作物の情報にアクセスできます。 また、 最近の見本園の写真も「資源作物コーナーの様子」、「稲コーナーの様子」、「麦コーナーの様子」として収録されています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 作物研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/nics/mihonen/
theme: T0014
theme: T0029
status: 稼動中

nbdc00872
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: AGROPEDIA

AGROPEDIA
type: Dataset
description: AGROPEDIA（アグロペディア）とは、農林水産試験研究に関する知の泉を創造するべく, 様々なデータベースを一同に集め,これらをインターネットを通じて情報提供するシステムの愛称であり、農(Agriculture)に関する知の泉 (Encyclopedia)を意味する合成語です。研究に役立つ文献、数値、衛星画像など様々なデータベースをご利用ください。
language: ja
publisher: 農林水産省 農林水産技術会議事務局筑波事務所
  type: Organization
  address country: 日本
landing page: http://www.agropedia.affrc.go.jp/top
theme: T0030
status: 稼動中

nbdc00873
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 農林認定品種データベース

農林認定品種データベース
type: Dataset
description: 農林認定（旧命名登録）は、農林水産技術会議事務局が所管している国立研究開発法人及び指定試験事業を委託している都道府県の試験研究機関が育成した農作物の系統で、その特性が優良なものについて農林水産省の新品種として決定し、普及に資するために認定しています。平成19年3月現在で89作物、1,807品種が登録されています。 本データベースはこれらの品種についてデータベース化したものです。検索した品種に関する詳細な解説の他、品種の系統図、図表データ、画像が表示されます。
language: ja
publisher: 農林水産省 農林水産技術会議事務局筑波事務所
  type: Organization
  address country: 日本
landing page: http://agriknowledge.affrc.go.jp/search/image/hinshu/
theme: T0014
theme: T0029
theme: T0027
status: 稼動中

nbdc00874
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: やさい・くだもの百科

やさい・くだもの百科
type: Dataset
description: 約60種の作物と、その品種約600種が納められているデータベースです。品種の名前、写真、簡単な説明がつけられています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 中央農業総合研究センター
  type: Organization
  address country: 日本
landing page: http://riss.nobody.jp/vegfru/
theme: T0014
theme: T0029
status: 稼動中

nbdc00875
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-07-18
source: Integbio Database Catalog
primary topic: RRDB

nbdc00875
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-02-02
source: Integbio Database Catalog
primary topic: RRDB

RRDB
type: Dataset
alternative: イネ学データベース（Rice Research Database）
alternative: Rice Research Database @en
description: 栽培イネの形態的・生理的特性データを集めた公開データベースです。 1000以上の品種についての約80の項目の特性データ（11万件）から構成されます。
description: RRDB is a database of cultivated rice constructed by Plant Genome Center (PGC). RRDB contains 1000 cultivated rice varieties in the world with 110000 entries of information on their characteristics. Users can search cultivars, traits and genetic relationships by keywords. @en
language: ja
language: en
publisher: 株式会社植物ゲノムセンター
  type: Organization
  label: Plant Genome Center Co.,Ltd. @en
  address country: Japan @en
  address country: 日本
landing page: http://www.pgcdna.co.jp/igs_system/abstract_e.html
landing page: http://www.pgcdna.co.jp/igs_system/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0014
status: Suspended @en
status: 公開停止中

nbdc00876
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-10-24
source: Integbio Database Catalog
primary topic: Regenerative-medicine.jp

Regenerative-medicine.jp
type: Dataset
description: 株式会社グローバルインフォメーションが運営する再生医療の市場情報に関するサイトです。 海外のニュースやホワイトペーパーなどの最新マーケット動向概要、世界各地で開催されるカンファレンスやイベント情報などが掲載されています。
language: ja
publisher: 株式会社グローバルインフォメーション
  type: Organization
  address country: 日本
landing page: http://www.gii.co.jp/topics/PH24_jp.shtml
theme: T0015
theme: T0030
status: 稼動中

nbdc00877
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-08-05
source: Integbio Database Catalog
primary topic: 診療報酬情報提供サービス

診療報酬情報提供サービス
type: Dataset
description: 診療報酬情報提供サービスは、医療保険請求に関わるレセプト電算処理システムに必要な情報を提供するホームページです。 医療保険請求に関わる様々な機関が事務を効率的かつ迅速に行えるよう、各種制度改正情報や点数表、薬価基準などの保険請求に必要な各種の情報や磁気レセプト作成のための基本マスターを提供しています。
language: ja
publisher: 厚生労働省 保険局
  type: Organization
  address country: 日本
distribution: Distribution
  description: data.pdf
  rights: faq
  access URL: http://www.iryohoken.go.jp/shinryohoshu/downloadMenu/
landing page: http://www.iryohoken.go.jp/shinryohoshu/
theme: T0015
theme: T0030
status: 稼動中

nbdc00878
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: iyakuSearch

iyakuSearch
type: Dataset
description: iyakuSearchはJAPICが提供する国内外の医薬品情報に関するデータベースです。
language: ja
publisher: 財団法人日本医薬情報センター
  type: Organization
  address country: 日本
landing page: http://database.japic.or.jp/nw/index
theme: T0015
theme: T0012
theme: T0019
theme: T0030
status: 稼動中

nbdc00879
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-08-02
source: Integbio Database Catalog
primary topic: JAPICDOC

JAPICDOC
type: Dataset
alternative: 医薬文献情報データベース
description: JAPICDOC は国内・海外の医学・薬学関連文献から医薬品に関する情報を蓄積したデータベースです。 国内文献は、医薬品の基礎から臨床までの情報で、特に医薬品の有効性や安全性を中心に収録し、 海外文献は、安全性に関する情報のみを収録しています。 財団法人日本医薬情報センターによるオリジナルサイトとしての運用は終了しましたが、iyakuSearch （http://integbio.jp/dbcatalog/record/nbdc00878） による検索対象に含まれています。
language: ja
publisher: 財団法人日本医薬情報センター
  type: Organization
  address country: 日本
landing page: https://e-infostream.com/dbs/japicdoc/
theme: T0015
theme: T0012
theme: T0030
status: 運用終了

nbdc00880
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 健康食品データベース

健康食品データベース
type: Dataset
description: 本データベースで扱う「健康食品」は、健康の保持・増進に資する食品として販売・利用されているもの全般としています。本データベースで提供する健康食品の情報は、健康食品の輸入・製造・販売会社からデータの提供を受け公開しているものです。医療関係者や都民の方が、健康食品の安全な利用について適切な判断を行う補助として利用すること、また医療相談の際に利用することを目的として作成されています。
language: ja
publisher: 社団法人東京都薬剤師会
  type: Organization
  address country: 日本
landing page: http://www.kenshoku-toyaku.jp/
theme: T0015
theme: T0030
status: 稼動中

nbdc00881
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: UMIN

nbdc00881
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: UMIN

UMIN
type: Dataset
alternative: University hospital Medical Information Network @en
description: UMIN is a repository of medical data and hospital statistics for healthcare professionals. UMIN contains databases of clinical practice, research related information, medical education / clinical training and university hospital management. Databases except for those of research related information are only available in Japanese. Users can search clinical trials and Japanese academic societies in medicine and related fields by keywords. @en
description: UMINは、国立大学附属病院長会議のもとで運用されているネットワークサービスで、東京大学医学部附属病院内にセンターがあります。大学病院業務 (診療・研究・教育・研究）及び医学・生物学研究者の研究教育活動の支援を目的としてサービスを行っています。
language: ja
language: en
publisher: 大学病院医療情報ネットワーク
  type: Organization
  label: University hospital Medical Information Network @en
  address country: Japan @en
  address country: 日本
landing page: http://www.umin.ac.jp/english/
landing page: http://www.umin.ac.jp/
theme: T0015
status: Active @en
status: 稼動中

nbdc00882
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BirdBase

nbdc00882
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: BirdBase

BirdBase
type: Dataset
description: BirdBase（アジアの鳥類分布データベース）は複数の調査機関に分散して所蔵されている調査データを横断的に検索できるWebGISシステムを提供しています。 「種名から検索する」、「地域から検索する」、「生息地の情報を見る」、「分布地の一覧を見る」などの検索メニューがあります。
description: BirdBase is a database of bird distribution developed by Hokkaido Institute of Environmental Science and Japan Sciences and Technology Agency (JST). This database contains multiple data sets related to bird distribution such as Threatened Birds of Asia, important Wetlands in Hokkaido, etc. Users can search bird surveys by species names, areas, as well as keywords. @en
language: ja
language: en
publisher: 地方国立研究開発法人北海道立総合研究機構 環境・地質研究本部環境科学研究センター
  type: Organization
  label: Hokkaido Research Organization,Environmental and Geological Research Department Institute of Environmental Sciences @en
  address country: Japan @en
  address country: 日本
landing page: http://birdbase.hokkaido-ies.go.jp/
landing page: http://birdbase.hokkaido-ies.go.jp/1_eng/index.html
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/8782
theme: T0030
status: Active @en
status: 稼動中

nbdc00883
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TMIG-2DPAGE Proteome Database

nbdc00883
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: TMIG-2DPAGE Proteome Database

TMIG-2DPAGE Proteome Database
type: Dataset
description: ヒト由来培養細胞4種類と、病理解剖組織1種類の二次元電気泳動画像と同定されたタンパクの情報を公開しています。
description: The TMIG-2DPAGE Proteome Database is clickable image maps for looking up the 2D gel proteome databases on human cell lines in XML. It contains information for proteomic approach to molecular mechanisms of cellular aging and oxidative stress-induced cell damages. 2D gel images of TIG-3 (human diploid fibroblast cell strain),HUVEC (human umbilical vein endothelial cells), SH-SY5Y (human neuroblastoma cell line) and EBV-transformed human B-lymphoblastoid cell line are included. This database also links to tools for proteomics in the web. @en
language: ja
language: en
publisher: 地方国立研究開発法人東京都健康長寿医療センター
  type: Organization
  label: Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology @en
  address country: Japan @en
  address country: 日本
landing page: http://proteome.tmig.or.jp/2D/J_index.html
landing page: http://proteomeback.tmig.or.jp/2D/index.html
theme: T0015
theme: T0029
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00884
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-06-25
source: Integbio Database Catalog
primary topic: GBIF JAPAN

GBIF JAPAN
type: Dataset
alternative: The Global Biodiversity Information Facility in Japan
description: GBIF (Global Biodiversity Information Facility) は、生物多様性に関するデータを各国・各機関で分散的に収集し、ネットワークを通じて全世界的に利用することを目的とする国際協力による科学プロジェクトです。 その活動により、動物、植物、微生物、菌類等広範な生物種、生物標本データ、遺伝子配列情報、タンパク質データ、生態系データ等の相互運用、利用が可能になることが期待されています。
language: ja
publisher: 情報・システム研究機構 国立遺伝学研究所
  type: Organization
  address country: 日本
landing page: http://www.gbif.jp/v2/
theme: T0014
theme: T0019
status: 稼動中

nbdc00886
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 飼料イネ技術情報

飼料イネ技術情報
type: Dataset
description: 飼料イネは水田の機能を維持したままで生産が可能な食用イネ以外の作物として、また、安全な国産粗飼料として飼料自給率の向上が期待されています。飼料イネの品種開発から、栽培・収穫・調整、家畜への給与に至る技術開発を情報発信するページです。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 畜産草地研究所
  type: Organization
  address country: 日本
landing page: http://nilgs.naro.affrc.go.jp/db/siryoine13/hyosi.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0014
theme: T0030
status: 休止

nbdc00887
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: 草地植生ファクトデータベース

草地植生ファクトデータベース
type: Dataset
description: 日本の草地生態系における生物群集の動態を調査したデータベースです。地域別、草地の種類別に植生データを検索できます。「草地の動態に関する研究」の第 I 期 (1972−1981年)で得られたデータを収録しています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 畜産草地研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/nilgs/vegetation/
theme: T0014
theme: T0020
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33090
theme: T0030
status: 稼動中

nbdc00888
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-02-04
source: Integbio Database Catalog
primary topic: 畜産環境文献データベース

畜産環境文献データベース
type: Dataset
description: 畜産環境文献情報データベースは、畜産草地研究所畜産環境分野の研究員が興味を持った文献等を適宜入力してデータベース化し、全文検索（キーワード検索）および文献リストの形で利用できるようにしているものです。畜産環境技術研究所の畜産環境技術情報データベースとも連携しており、全文検索は双方のデータベースを対象に行われます。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 畜産草地研究所
  type: Organization
  address country: 日本
landing page: http://www.naro.affrc.go.jp/org/nilgs/envr/c_index/
theme: T0020
theme: T0030
status: 稼動中

nbdc00889
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-01-09
source: Integbio Database Catalog
primary topic: 牛肉のプロテオーム解析データベース

牛肉のプロテオーム解析データベース
type: Dataset
description: 動物の筋肉は多数の筋構造蛋白質と筋漿蛋白質で構成されています。食肉の品質はこれらの蛋白質成分の量や質が変わることで違ってくると考えられます。このデータベースは牛肉の全蛋白質、筋原繊維蛋白質、筋漿蛋白質の２次元電気泳動のゲル画像と同定されたタンパク質、研究成果を公開しています。
language: ja
language: en
publisher: 独立行政法人農業・食品産業技術総合研究機構 畜産草地研究所
  type: Organization
  address country: 日本
landing page: http://nilgs.naro.affrc.go.jp/meat/pub/title.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0029
theme: T0007
status: 運用終了

nbdc00890
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 有用植物の病害診断/防除総合システム

有用植物の病害診断/防除総合システム
type: Dataset
description: 穀類、野菜類の病害データと病原菌の情報を検索するサイトです。全国各地で作成された病害虫データベースや生理障害データベースを一括して検索できます。また、病害データベースは宿主からの検索も可能です。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 中央農業総合研究センター
  type: Organization
  address country: 日本
landing page: http://riss.nobody.jp/disease/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: 稼動中

nbdc00891
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 野菜生理障害事例検索システム

野菜生理障害事例検索システム
type: Dataset
description: 野菜に発生した生理障害に関する事例情報を総合的に検索するサイトです。農業関連の研究者・普及員・生産者を対象としています。
language: ja
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 中央農業総合研究センター
  type: Organization
  address country: 日本
landing page: http://riss.nobody.jp/sspd/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33090
status: 稼動中

nbdc00892
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 日本植物病名データベース

nbdc00892
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 日本植物病名データベース

日本植物病名データベース
type: Dataset
title: Database of Plant Diseases in Japan @en
description: 日本植物病理学会編集の日本植物病名目録に記載された情報を、同学会の許可を得て転載したデータベースです。宿主の索引から検索することも可能です。
description: This is a database of plant diseases created on the basis of a catalog, "Common names of plant diseases in Japan", which compiled by The Phytopathological Society of Japan. Searches can be performed by host species, disease name, pathogen name and host, and type of pathogen, as well as via host plant family list. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.gene.affrc.go.jp/databases-micro_pl_diseases_en.php
landing page: http://www.gene.affrc.go.jp/databases-micro_pl_diseases.php
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0019
status: Active @en
status: 稼動中

nbdc00893
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 農業生物資源ジーンバンク：植物画像データベース

nbdc00893
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: 農業生物資源ジーンバンク：植物画像データベース

農業生物資源ジーンバンク：植物画像データベース
type: Dataset
title: NIAS Genebank : Illustrations of Plant @en
description: 稲類、麦類、豆類、野菜、花き・緑化植物、特用・飼料作物について、分類、分布、形態的特徴、遺伝資源としての評価などの情報を、種子、葉、花、生息地などの画像とともに紹介しています。
description: This site provides images and characteristics of Rice, Legume, Vegetables, Flower&Ornamental Plants, Millet and Forage Crops, which includes information of their distribution in the field and their morphology etc. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.gene.affrc.go.jp/databases-plant_images.php
landing page: http://www.gene.affrc.go.jp/databases-plant_images_en.php
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0029
status: Active @en
status: 稼動中

nbdc00894
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 農業生物資源ジーンバンク：動物画像データベース

nbdc00894
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: 農業生物資源ジーンバンク：動物画像データベース

農業生物資源ジーンバンク：動物画像データベース
type: Dataset
title: NIAS Genebank : Illustrations of animal / insects @en
description: This site provides images and characteristics, such as their appearance, of a large number of breeds and strains of chickens and silkworms in Japan. @en
description: 国内に多くの品種・系統が存在するニワトリとカイコについて、その特徴を画像とともに紹介しています。
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.gene.affrc.go.jp/databases-animal_images_en.php
landing page: http://www.gene.affrc.go.jp/databases-animal_images.php
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: T0014
status: Active @en
status: 稼動中

nbdc00895
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: 農業生物資源ジーンバンク：遺伝資源データベース

nbdc00895
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-19
source: Integbio Database Catalog
primary topic: 農業生物資源ジーンバンク：遺伝資源データベース

農業生物資源ジーンバンク：遺伝資源データベース
type: Dataset
title: NIAS Genebank : Databases @en
description: 農業生物資源ジーンバンクでは、遺伝資源に関する情報をデータベース化し、オンラインで公開しています。遺伝資源の配布を希望される方にもご利用いただくことができます。植物遺伝資源、動物遺伝資源、微生物遺伝資源、DNA (NIAS DNAバンク)の４つの部門から構成されます。
description: genetic resources center in NARO (National Agriculture and Food Research Organization) provides information on a range of genetic resources. It includes genetic informaton about plants, animal, microbial, and DNA (NIAS DNA bank) . It also includes information about distribution of those genetic resources. @en
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.gene.affrc.go.jp/databases.php
landing page: http://www.gene.affrc.go.jp/databases_en.php
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1
theme: T0017
status: Active @en
status: 稼動中

nbdc00896
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: MgNEST-DB

nbdc00896
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-08
source: Integbio Database Catalog
primary topic: MgNEST-DB

MgNEST-DB
type: Dataset
alternative: Magnaporthe grisea EST Database
description: イネいもち病菌のESTを35,189配列解読し、その配列を用いて4,155の遺伝子情報を詳細に決定しました。解読したEST配列、決定した遺伝子座及び関連解析の結果をデータベースに収録し、公開しています。
language: en
publisher: 国立研究開発法人農業生物資源研究所
  type: Organization
  label: National Institute of Agrobiological Sciences @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19186180
landing page: http://mg.dna.affrc.go.jp/
theme: T0021
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/148305
theme: T0002
status: 運用終了
status: Closed @en

nbdc00897
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-07
source: Integbio Database Catalog
primary topic: 動物用医薬品データベース

動物用医薬品データベース
type: Dataset
description: 動物用医薬品の詳細情報を収集したデータベースです。商品名、販売社名、主成分、対象動物、薬効分類から検索できます。
language: ja
publisher: 農林水産省 動物医薬品検査所
  type: Organization
  address country: 日本
landing page: http://www.nval.go.jp/asp/asp_dbDR_idx.asp
theme: T0012
theme: T0030
status: 稼動中

nbdc00898
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-01-07
source: Integbio Database Catalog
primary topic: 副作用情報データベース

副作用情報データベース
type: Dataset
description: 過去に報告された動物用医薬品副作用情報を収集したデータベースです。最新報告、報告年月日、品名、主成分名、生物学的製剤名で検索できます。
language: ja
publisher: 農林水産省 動物医薬品検査所
  type: Organization
  address country: 日本
landing page: http://www.nval.go.jp/asp/se_search.asp
theme: T0012
theme: T0030
status: 稼動中

nbdc00899
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-05-07
source: Integbio Database Catalog
primary topic: GlycomeDB

nbdc00899
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-05-07
source: Integbio Database Catalog
primary topic: GlycomeDB

GlycomeDB
type: Dataset
alternative: The carbohydrate structures metadatabase
description: 糖鎖配列の構造情報を蓄積するためのXMLベースの配列記述フォーマット(GlycoCT)を定義し、公共データベース(CFG, KEGG, KEGG, GLYCOSCIENCES.de, BCSDB and Carbbank)の全糖鎖配列をGlycoCTに変換し、アノテーションとともにデータベースに収容しました。 構造の記述方法を統一したことによって異なるデータベース間のクロスリンクが可能となり、ユーザはこのデータベースを使用することで、5つの糖鎖構造データベースの構造情報を得ることができます。 検索したい構造を画面上で簡単に作成、入力できる構造検索、部分構造検索、類似構造検索、その他、生物種別の検索ができます。 2016年にGlyTouCanデータベース（http://glytoucan.org/ ）へのデータの移行に伴って、運用は終了しました。
description: GlycomeDB is a database of carbohydrate structural information. The database contains structural information collected from other sites and studies which can be searched, accessed, and compared using several tools. Users can search by ID, structure, similarity, or species. Data is available for download. GlycomeDB is now closed, please use GlyTouCan (http://glytoucan.org/). @en
language: en
publisher: German Cancer Research Center
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/25753706
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19759275
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21045056
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18803830
distribution: Distribution
  access URL: http://www.glycome-db.org/showMenu.action?major=downloads
landing page: http://www.glycome-db.org/
theme: T0021
theme: T0023
theme: T0008
status: 運用終了
status: Active @en

nbdc00900
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GLYCOSCIENCES.de

nbdc00900
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GLYCOSCIENCES.de

GLYCOSCIENCES.de
type: Dataset
description: Glycoscience.de is a database of glycosylation and glycoproteins. The database contains experiment, sequence, and study information which can be browsed or searched. Tools for modeling carbohydrate chains and glycoproteins are available, as are tools for notating, visualizing, and analyzing glycoproteins. @en
description: 糖鎖生物学やグライコミクスのためのデータベースや各種ツールを提供しているサイトです。GLYCOSCIENCES.deプロジェクトは German Cancer Research Center (DKFZ)の分子モデリンググループにて糖鎖関連データベースやツールを開発するプロジェクトとして1990年代にスタートしました。現在、6種類のモデリングツールと10種類の解析ツール、文献データベース、各種構造データベース、NMRデータベース、質量分析データベース、Protein Data Bank (PDB)に登録されている糖鎖を収録したデータベースを提供しています。
language: en
publisher: Justus-Liebig University Giesen
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10498779
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15980456
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15608187
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17202164
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11675023
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16239495
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19277543
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16845109
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15010309
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20364395
references: http://rdf.ncbi.nlm.nih.gov/pubmed/12908101
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15215392
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15260896
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17202175
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15180909
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19171971
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752350
landing page: http://www.glycosciences.de/index.php
theme: T0023
theme: T0022
theme: T0008
theme: T0030
status: Active @en
status: 稼動中

nbdc00901
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: AffinDB

nbdc00901
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: AffinDB

AffinDB
type: Dataset
alternative: Affynity Database For Protein-Ligand Complexes
description: PDBに登録されているタンパク-リガンド複合体のアフィニティデータを収集したデータベースです。リガンドの構造やアフィニティ強度、文献等の情報を調べることができます。現在748のアフィニティデータが登録されています。
description: AffinDB is a database of protein-ligand complexes. The database contains affinity data and structures (in the form of PDB files) for hundreds of complexes. Users can browse by several ligand features including exact or a range of values, or browse interactions. @en
language: en
publisher: Department of Pharmaceutical Chemistry, Philipps-University Marburg
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381925
landing page: http://pc1664.pharmazie.uni-marburg.de/affinity/index.php
theme: T0023
theme: T0022
theme: T0026
theme: T0007
theme: T0029
status: Active @en
status: 稼動中

nbdc00902
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: tRNAdb

nbdc00902
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-04-21
source: Integbio Database Catalog
primary topic: tRNAdb

tRNAdb
type: Dataset
alternative: Transfer RNA Database @en
description: 577生物種の12,000以上のtRNA遺伝子と、104生物種の623以上のtRNA配列と構造が格納されています。これらはアンチコドン・トリプレットによって決定されるアミノ酸特異性によってファミリーに分類されています。各エントリーは、生物種、DNAまたはRNA配列、アミノ酸ファミリー、アンチコドン、文献、PubmedID等をクエリとして検索できます。
description: tRNAdb is a database of transfer RNAs from hundreds of species. The database is divided into nuclear and mitochondrial subsections, each of which includes complete tRNA gene compliments for the appropriate subcellular component. genes have been computationally detected and in many cases experimentally verified. Users can search and download tRNA sequences. @en
language: en
publisher: University of Leipzig
  type: Organization
  address country: Germany @en
  address country: ドイツ
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18957446
landing page: http://trna.bioinf.uni-leipzig.de/DataOutput/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10239
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00904
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: JASPAR

nbdc00904
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: JASPAR

JASPAR
type: Dataset
description: JASPAR COREデータベースは、実験で明らかにされ文献で報告された真核生物の転写結合サイトのデータをキュレートし、冗長を省いた転写結合プロファイルを収容しています。TRANSFAC等の同様のデータベースとの違いは、オープンアクセス、非冗長性、質の点で異なります。
description: JASPAR is a database of transcription factor binding sites. The database contains experimentally verified promoter and other gene expression regulation sites represented as sequence logos indicating critical nucleotides for recognition and binding by a given factor. Dozens of species are represented, and users can search by protein, motif, species, or protein structure family. @en
language: en
publisher: University of Copenhagen
  type: Organization
  address country: Denmark @en
  address country: デンマーク
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18006571
distribution: Distribution
  description: help.html
  access URL: http://jaspar.genereg.net/html/DOWNLOAD/
landing page: http://jaspar.genereg.net/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0001
status: Active @en
status: 稼動中

nbdc00905
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-11-06
source: Integbio Database Catalog
primary topic: Human Protein Atlas

nbdc00905
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-06
source: Integbio Database Catalog
primary topic: Human Protein Atlas

Human Protein Atlas
type: Dataset
description: 様々な種類のヒトの器官、組織、細胞におけるタンパク質の発現および局在に関するデータベースです。蛍光抗体イメージング、質量分析に基づくプロテオミクス、網羅的な遺伝子発現解析によるトランスクリプトミクスおよびシステム生物学の手法により得られた情報を遺伝子ごとに記載しています。各レコードは３つのアトラスで構成されています。 「組織アトラス」：ヒトの主要組織や器官におけるRNA発現量、タンパク質発現量 「細胞アトラス」：RNA発現量や発現画像、GFP発現画像など細胞内での局在 「疾病アトラス」：生存がん患者の組織における量的発現解析（RNA-seq）や空間的発現解析（マイクロアレイ）によるタンパク質発現レベル また、抗体の情報、細胞内器官の説明、各組織における腫瘍の説明や生存率の情報なども収録しています。 遺伝子名、抗体名、タンパク質の分類によるデータの絞り込みが可能です。
description: Human Protein Atlas is a database of protein expression and localization. The database contains information on where proteins localize within cells and lists antibodies for the detection of human proteins. Information on expression in cancer lines as well as RNA transcript expression is also represented. Elements can be searched by several positional characteristics. @en
language: en
publisher: Uppsala University
  type: Organization
  address country: スウェーデン
  address country: Sweden @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16237735
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18853439
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16127175
distribution: Distribution
  description: download
  rights: licence
  access URL: https://www.proteinatlas.org/about/download
landing page: https://www.proteinatlas.org
theme: T0014
theme: T0024
theme: T0025
theme: T0029
theme: T0001
theme: T0007
theme: T0013
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00906
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GlycoSuite

nbdc00906
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GlycoSuite

GlycoSuite
type: Dataset
description: This database has been retired. The data are available in UniCarbDB (http://integbio.jp/dbcatalog/en/record/nbdc01525). @en
description: GlycoSuiteDBは、アノテーション付けされた糖鎖構造の関係型データベースで、Tyrian Diagnostics Ltd の製品です。1990-2005年に文献で発表されたO-glycan, N-glycanの構造が収録されています。glycanのタイプ、リンケージ、アノマー配置、質量、組成、ソース等で検索できます。
language: en
publisher: Swiss Institute of Bioinformatics
  type: Organization
  address country: スイス
  address country: Switzerland @en
landing page: http://glycosuitedb.expasy.org/glycosuite/glycodb
theme: T0023
theme: T0008
status: 休止
status: Inactive @en

nbdc00907
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: MetaCyc

nbdc00907
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-29
source: Integbio Database Catalog
primary topic: MetaCyc

MetaCyc
type: Dataset
description: MetaCycは実験的に検証された代謝パスウエイのデータベースで、1900種以上の生物由来の1500以上のパスウエイが収録されています。
description: MetaCyc is a database of metabolic pathways. The database contains hundreds of curated pathways from hundreds of organisms acorss all kingdoms of life. Users can search by gene, protein, enzyme, or keyword, and explore pathways across related species. @en
language: en
publisher: SRI International
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16381923
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10592180
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681452
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17965431
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11752254
distribution: Distribution
  description: flatfile-format.html
  rights: download.shtml
  access URL: http://metacyc.org/download.shtml
landing page: http://metacyc.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/1
theme: T0010
theme: T0026
theme: T0001
theme: T0007
theme: T0006
theme: T0029
status: Active @en
status: 稼動中

nbdc00908
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SMPDB

nbdc00908
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: SMPDB

SMPDB
type: Dataset
alternative: Small Molecule Pathway Database @en
description: SMPDB is a database of the biological pathways of small molecules. The database contains pathway information on hundreds of small molecules, many unique to SMPDB. Users can browse pathways by category, search the database, or use structure, sequence, and small molecule tools to explore pathways. @en
description: SMPDB(Small Molecule Pathway Database)は、350以上のヒトの小分子パスウエイを含む視覚的なデータベースです。これらのうち2/3以上のパスウエイ(>280)は他のパスウエイデータベースでは見つけることができません。 SMPDBは、メタボロミクス、トランスクリプトミクス、プロテオミクス、およびシステム生物学におけるパスウエイ解明や発見をサポートするために構築されています。 全てのパスウエイには、詳細な解説、文献情報、関連器官、細胞内コンパートメント、タンパク質補助因子、タンパク質局在、代謝物質局在、化学構造、タンパク質四次構造に関する情報が含まれています。代謝物質名、薬剤名、遺伝子/タンパク質名、SwissProt ID、GenBank ID、アフィメトリクスIDまたはAgilentマイクロアレイIDのリストをクエリーとして検索すると、該当するパスウエイのリストが作成され、マッチした分子をハイライト表示します。
language: en
publisher: University of Alberta
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19948758
distribution: Distribution
  description: downloads
  rights: citing
  access URL: http://smpdb.ca/downloads
landing page: http://www.smpdb.ca/
theme: T0010
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0029
status: Active @en
status: 稼動中

nbdc00909
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HMDB

nbdc00909
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HMDB

HMDB
type: Dataset
alternative: Human Metabolome Database @en
description: HUMDB is a database of human metabolites. The database contains information on thousands of metabolites produced by and found in the human body as a result of metabolic processes. genes and proteins related to the metabolites are also affiliated with records, where appropriate. Data on metabolites and the associated genes and proteins are available for download. @en
description: ヒト体内における低分子代謝物の詳細情報を収集したデータベースです。メタボロミクスや臨床化学、バイオマーカー探索、教育分野で活用されることを目的に構築しており、化学データ、臨床データ、分子生物学/化学データを含んでいます。現在、7,900代謝物が登録されており、7,200のタンパク質（DNA）配列のリンク情報があります。
language: en
publisher: University of Alberta
  type: Organization
  address country: カナダ
  address country: Canada @en
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18953024
distribution: Distribution
  rights: cite
  access URL: http://www.hmdb.ca/downloads
landing page: http://www.hmdb.ca/
theme: T0021
theme: T0015
theme: T0010
theme: T0026
theme: T0007
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0028
status: Active @en
status: 稼動中

nbdc00910
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Animal Genome Size Database

nbdc00910
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-11-27
source: Integbio Database Catalog
primary topic: Animal Genome Size Database

Animal Genome Size Database
type: Dataset
description: Animal Genome Size Database contains information on the genomes of hundreds of species. For each species, the database reports the C value, information on the number of chromosomes, and details of the experimental methods used to determine genome size. @en
description: 動物のゲノムサイズデータの総合的なカタログです。ゲノムサイズとは、ハプロイド核DNA含量、すなわち、1生物種の染色体の1コピーのDNA量を指します。 ハプロイドDNA含量は「C-value」とも呼ばれます。二倍体の生物ではC-valueとゲノムサイズは同義です。現在の収録数は、4972生物種（3231脊椎動物、1741無脊椎動物）にのぼり、C-valueや染色体数が収録されています。
language: en
publisher: University of Guelph
  type: Organization
  address country: カナダ
  address country: Canada @en
landing page: http://www.genomesize.com/search.php
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33208
theme: T0001
status: Active @en
status: 稼動中

nbdc00911
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-05-09
source: Integbio Database Catalog
primary topic: IPI

nbdc00911
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: IPI

IPI
type: Dataset
alternative: International Protein Index
description: 7つのデータリソース（UniProtKB/Swiiss-Prot, UniProtKB/TrEMBL., RefSeq, Ensembl, TAIR, H-InvDB, Vega)のタンパク配列をもとに、非冗長タンパク配列データセットを収録しています。 2001年から2010年まで更新を続けてきましたが、2011年9月をもってサービスを終了しました。最終データはftpサイト （ftp://ftp.ebi.ac.uk/pub/databases/IPI） から取得可能です。また、脊椎動物、無脊椎動物からのゲノムデータやプロテオームデータのアクセス情報と連絡先が、EMBL-EBIのサイト （http://www.ebi.ac.uk/IPI） に記載されています。
language: en
publisher: European Bioinformatics Institute
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
references: http://rdf.ncbi.nlm.nih.gov/pubmed/15221759
distribution: Distribution
  rights: README
  access URL: ftp://ftp.ebi.ac.uk/pub/databases/IPI
landing page: http://www.ebi.ac.uk/IPI/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
status: 運用終了
status: Closed @en

nbdc00912
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Plant DNA C-value Database

nbdc00912
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Plant DNA C-value Database

Plant DNA C-value Database
type: Dataset
description: Plant DNA C-value Database is a resource for the nuclear genetic content of plants. The database contains values determined experimentally for a large range of plants covering thousands of species. Users can submit values and register to receive updates. @en
description: 一生物種の非複製配偶子の核DNA量はC-valueとして表されます。植物DNA C-value データベースは現在5150種の植物のC-valueデータを収容しています。被子植物DNA C-valueデータベース、裸子植物DNA C-valueデータベース、シダ植物DNA C-valueデータベース、コケ植物DNA C-valueデータベース、藻類DNA C-valueデータベースのデータを集結したものです。
language: en
publisher: Royal Botanic Gardens, Kew
  type: Organization
  address country: United Kingdom @en
  address country: イギリス
landing page: http://data.kew.org/cvalues/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0001
status: Active @en
status: 稼動中

nbdc00913
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-05-09
source: Integbio Database Catalog
primary topic: BioCarta

nbdc00913
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: BioCarta

BioCarta
type: Dataset
alternative: Charting Pathways of Life
description: BioCarta is a database of gene interaction models. The database contains high-quality images of several cellular signaling and interaction pathways, and each diagram is fully hyperlinked to products and information pages about individual genes. Users can access product sales pages for selected elements of each pathway. @en
description: 細胞内のパスウエイ模式図を検索できる企業サイトです。図中の分子をクリックすると、OMIMやPubMedなど外部リンクにて分子の詳細を確認することができます。 図が綺麗です。 BioCarta LLCによるBioCartaの運用は終了しました。 パスウェイ情報はこちらのサイト （https://cgap.nci.nih.gov/Pathways/BioCarta_Pathways） から入手可能です。
language: en
publisher: BioCarta LLC
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.biocarta.com/genes/index.asp
landing page: http://www.genecarta.com
theme: T0026
theme: T0007
theme: T0029
status: 運用終了
status: Closed @en

nbdc00914
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: PMN

nbdc00914
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: PMN

PMN
type: Dataset
alternative: Plant Metabolic Network
description: PMN is a database of plant metabolic pathways. The database contains information on metabolic pathways in over a dozen plant species which users can search by gene, protein, reactions, compounds, or pathways. Users can download pathway and enzyme data as well as pathway software. @en
description: PMNは生化学者とデータベースのコラボレーションプロジェクトであり、植物の代謝パスウエイデータベースを構築することを目標としています。 PMNで現在公開しているデータベースは、「PlantCyc」「AraCyc」「PoplarCyc」および他の植物代謝データベースのリンク集です。 「PlantCyc」はPMNの中心的存在となる包括的な植物生化学パスウエイデータベースであり、300種類以上の植物の一次代謝、二次代謝に関わる遺伝子、酵素、化合物、反応、パスウエイについての文献情報やコンピュータによる解析結果をキュレートし提供しています。 「AraCyc」はモデル植物であるシロイヌナズナの代謝パスウエイに関する情報をキュレートし提供しています。シロイヌナズナの実験データ（遺伝子発現データ、プロテオミクスデータ、メタボロミクスデータ）を代謝パスウエイマップに重ねることができます。 「PoplarCyc」はモデル樹木であるポプラとその近縁種やハイブリッド種の代謝パスウエイに関する情報をキュレートし提供しています。ポプラの実験データ（遺伝子発現データ、プロテオミクスデータ、メタボロミクスデータ）を代謝パスウエイマップに重ねることができます。
language: en
publisher: Carnegie Institution for Science/Department of Plant Biology
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/22280840
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20522724
distribution: Distribution
  rights: data downloads.faces
  access URL: http://www.plantcyc.org/downloads/data_downloads.faces
landing page: http://www.plantcyc.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3193
theme: T0026
theme: T0007
theme: T0006
status: Active @en
status: 稼動中

nbdc00915
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Geneimprint

nbdc00915
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Geneimprint

Geneimprint
type: Dataset
description: ゲノムインプリンティングの関連記事、レビュー、プレス報道、講演のビデオおよび音声、学会、遺伝情報を収集したポータルサイトです。「genes」タブには、7種類の生物種のインプリンティング遺伝子リスト（遺伝子名、染色体ロケーション、同定ステータス、発現アリル）が掲載されています。
description: geneimprint is a database of epigenetics in mammals. The database contains general information, articles and news about genomic imprinting, and lists of mammalian genes which are known or suspected to be imprinted. @en
language: en
publisher: Duke University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://www.geneimprint.com/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: T0031
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9940
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
status: Active @en
status: 稼動中

nbdc00916
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-23
source: Integbio Database Catalog
primary topic: ITIS

nbdc00916
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-22
source: Integbio Database Catalog
primary topic: ITIS

ITIS
type: Dataset
description: 生物名と種の階層分類を収録しているデータベースです。ホワイトハウスの生物多様性および生態力学に関する分科委員会では、系統分類学が生物多様性保全と生態系管理の基礎となる優先研究課題であると認識されており、用語体系の標準化や組織化の改良が必要とされています。このデータベースはこれらの要件を実現するように設計されており、使い易く、信頼性の高い情報を提供するデータベースを目指しています。
description: ITIS is a database of taxonomic nomenclature and information used in biodiversity and ecosystem preservation programs. The database contains information on species and serves as a respository for biodiversity information for US government programs. The database can be searched by taxon or hierarchically, and taxonomic data can be downloaded. @en
language: en
publisher: Integrated Taxonomic Information System
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: download format.html
  rights: copyright
  access URL: http://www.itis.gov/downloads/index.html
landing page: http://www.itis.gov
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4751
theme: T0014
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2763
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7742
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/33090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3041
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0027
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
theme: T0030
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2870
theme: T0019
status: Active @en
status: 稼動中

nbdc00917
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-08-01
source: Integbio Database Catalog
primary topic: GenProtEC (E. Coli genome and proteome database)

nbdc00917
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-08-01
source: Integbio Database Catalog
primary topic: GenProtEC (E. Coli genome and proteome database)

GenProtEC (E. Coli genome and proteome database)
type: Dataset
description: Escherichia coli K-12 (strain MG1655) ゲノムにコードされた機能に対するアノテーションを蓄積しています。1)オーソログの配列相同性、機能ごとに分子ユニットを形成する融合タンパクの解析、2)大腸菌間で相同タンパク配列を示すグループの同定、3)文献情報のアップデート、4)遺伝子のタイプや細胞内の役割による遺伝子産物の分類等の情報が整理されています。
description: GenProtEC is a database of the E. coli genome and proteome. The database contains related sequence information which can be searched by sequence or keyword, as well as several comparative and classification resources for functional characterization and exploration. @en
language: en
publisher: Marine Biological Laboratory
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14681418
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11574054
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9399799
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11948287
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11677689
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11471834
landing page: http://genprotec.mbl.edu/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/83333
theme: T0001
theme: T0007
theme: T0028
status: 運用終了
status: Closed @en

nbdc00918
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Cancer Genes

nbdc00918
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Cancer Genes

Cancer Genes
type: Dataset
description: がんゲノム大型共同プロジェクトにおける遺伝子選択および優先付けプロセスを簡素化するためのリソースです。各遺伝子は専門家によってアノテーション付けされています - 遺伝子名、機能説明、生物種、染色体番号と位置、遺伝子構造、転写制御領域、外部リンクなど。ユーザはブラウザ上あるいはスプレッドシートのダウンロードにより遺伝子リストを取得できます。
language: en
publisher: Memorial Sloan-Kettering Cancer Center
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17088289
landing page: http://cbio.mskcc.org/CancerGenes/Select.action
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 休止
status: Inactive @en

nbdc00919
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-03-30
source: Integbio Database Catalog
primary topic: Pathway Interaction Database

nbdc00919
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-03-30
source: Integbio Database Catalog
primary topic: Pathway Interaction Database

Pathway Interaction Database
type: Dataset
description: Pathway Interaction Database is a database of interactions between biological molecules. The database consists of data on molecular interactions as well as functional networks and pathways. Pathways and molecules can be browsed or searched individually or in batch format. A variety of datasets are available for download. @en
description: National Cancer Institute (NCI)とNature Publishing Group (NPG)の共同プロジェクト。NCIとNPGでキュレートした信頼性の高い113ヒトパスウエイ（7496相互作用）と、BioCarta/Reactomeからインポートした332ヒトパスウエイ（7575相互作用）を収集しています。 NCIによるPathway Interaction Databaseの運用は終了しました。引き続きのデータ利用やダウンロードに関する情報がNCIのサイト （https://wiki.nci.nih.gov/pages/viewpage.action?pageId=315491760） に掲載されています。
language: en
publisher: National Cancer Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18832364
distribution: Distribution
  description: database content.shtml
  description: README
  rights: copyright
  access URL: http://pid.nci.nih.gov/download.shtml
landing page: http://pid.nci.nih.gov/
theme: T0010
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: 運用終了
status: Active @en

nbdc00920
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TCGA

nbdc00920
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TCGA

TCGA
type: Dataset
alternative: The Cancer Genome Atlas Project
description: The Cancer Genome Atlas is a database of genomic sequences derived from normal and cancerous tissue samples in studies designed to understand the genetic drivers of cancer. The database contains sequences from selected, prioritized cancer types which can be downloaded via a data portal site. News and podcasts are also available. @en
description: 米国立衛生研究所（NIH）の一機関である米国立癌研究所（NCI）と米国立ヒトゲノム研究所（NHGRI）が資金提供する共同プロジェクト。がんに関連する重要な遺伝子変異の包括的な目録づくりを目指すため、成人がん患者の腫瘍のDNA配列解読を行っています。TCGA Data PortalよりTCGAで産生されたデータの閲覧やダウンロードが可能です。
language: en
publisher: National Cancer Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
distribution: Distribution
  description: tcgaDataType.jsp
  rights: policiesguidelines
  access URL: https://tcga-data.nci.nih.gov/tcga/tcgaDownload.jsp
landing page: http://cancergenome.nih.gov/
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00922
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CGEMS

nbdc00922
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CGEMS

CGEMS
type: Dataset
alternative: Cancer Genetic Markers of Susceptibility
description: Cancer genetic Markers of Susceptibility is a database of GWAS studies on various types of cancer. The database contains summaries from over a dozen data sets as well as a SNP imputation resource. Users can apply for access to data. @en
description: 様々ながんのゲノムワイド関連解析(GWAS)を実施し、がんになるリスクに影響を及ぼす共通の遺伝的変異を同定するためのプロジェクトです。前立腺がん、乳がん、膵がん、肺がんの解析が終了しています。データを閲覧するにはユーザ登録が必要です。genotype data (raw data)をダウンロードするにはData Access Requestの承認が必要となります。
language: en
publisher: National Cancer Institute
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20237344
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19330027
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17529973
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19330030
distribution: Distribution
  rights: data-sharing
  access URL: http://dceg.cancer.gov/research/how-we-study/genomic-studies/data-sharing
landing page: http://cgems.cancer.gov/
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0003
status: Active @en
status: 稼動中

nbdc00923
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HIV-1, Human Protein Interaction Database

nbdc00923
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HIV-1, Human Protein Interaction Database

HIV-1, Human Protein Interaction Database
type: Dataset
description: HIV-1, Human Protein Interaction Database catalogs the interactions between the virus that causes AIDS and human proteins. The database contains information on HIV-1 proteins and datasets characterizing virus-human protein interactions. Reports are available for each HIV-1 protein individually and links are provided to external databases with related information. @en
description: HIV-1タンパクと宿主細胞タンパクとの相互作用の知見を収集することは、HIV-1の複製や発症のプロセスを理解するのに重要であり、また安全かつ効率的なAIDSの治療法や予防戦略の開発に必須となります。 本プロジェクトでは、HIV/AIDS研究分野の研究者にHIV-1タンパクと宿主細胞タンパク、他のHIV-1タンパク、HIV/AIDSに関連する病原生物のタンパクとの既知の相互作用について、簡潔で詳細な概要を提供することを目的としています。 データベースで提供される相互作用データはすべて文献で報告されたものに基づいています。
language: en
publisher: National Center for Biotechnology Information
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19025396
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18927109
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19262354
distribution: Distribution
  description: browse
  rights: about
  access URL: http://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/interactions/browse/
landing page: http://www.ncbi.nlm.nih.gov/RefSeq/HIVInteractions/
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/11676
theme: T0026
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00924
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IEDB

nbdc00924
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IEDB

IEDB
type: Dataset
alternative: Immune Epitope Database
description: IEDBでは、実験で明らかにされたT細胞およびB細胞エピトープ（抗原決定基）のカタログや、主要組織適合性複合体(MHC)結合アッセイ、MHCリガンド溶出アッセイのデータ等を提供しています。エントリーには、ヒトやその他の霊長類、齧歯動物、ブタ、ウシ、その他の動物で認識されたエピトープが含まれています。 180,978件の実験情報は文献から手作業でキュレートし、HIV以外の感染因子に関連するペプチドエピトープについては全公開情報の99%をカバーしています。アレルゲンに関連するエピトープは93%、自己免疫に関連するエピトープについては2010年までに完成する予定です。 検索は、エピトープ構造、由来生物種、MHCクラス、アッセイタイプ、宿主生物等を指定できます。
description: IEDB is a database of immunological molecules. The database contains entries on epitopes, MHC alleles and assays measuring immunological entities gathered from the literature. Users can search by epitope structure, epitope source, recognition context, or disease associations. Epitope prediction tools are available online, and some tools are available for local download and operation. @en
language: en
publisher: National Institute of Allergy and Infectious Diseases
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19906713
landing page: http://www.immuneepitope.org/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9615
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9823
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9598
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/37293
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9796
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10141
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9940
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9031
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9925
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9986
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9913
theme: T0021
theme: T0007
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9544
theme: T0030
status: Active @en
status: 稼動中

nbdc00925
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: Health Information

nbdc00925
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: Health Information

Health Information
type: Dataset
description: NIHヘルスインフォメーションは、読者に健康に関するより良い知識と理解を助け、病気を防ぐ手段とし、家族や身近な人が罹る病気の理解を深めることを目的としています。これらの記事は専門家によって精査され、正確、有用、かつタイムリーな情報のみを掲載しています。そして、誰もが読みやすく情報にアクセスしやすいように努めています。
description: Health Information is a database of health and disease information for the general public. The database contains descriptions and explanations of medically relevant topics ranging from nutrition to concussions. Links are provided to related resources. @en
language: en
publisher: National Institutes of Health
  type: Organization
  label: National Institute of Health @en
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://health.nih.gov/
theme: T0015
theme: T0030
status: Active @en
status: 稼動中

nbdc00926
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GAD

nbdc00926
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-08
source: Integbio Database Catalog
primary topic: GAD

GAD
type: Dataset
alternative: Genetic Association Database @en
description: GAD is a database of human genetic associations. The database contains entries collected from published association and genome-wide association studies which connect genes to diseases or other phenotypes. Users can browse by disease or gene, or perform single or batch searches. The database can be downloaded by request. @en
description: ヒト疾患の遺伝的関連研究データを管理するデータベースです。候補遺伝子解析やゲノムワイド関連解析(GWAS)に関する査読文献から抽出した要約データも含まれます。各エントリーは遺伝子名、染色体番号、文献名、疾患名、環境要因名から検索できます。 NIHによるGADの運用は終了しましたが、2014年8月18日時点のデータがダウンロード可能であり、NIHのサイト（ https://geneticassociationdb.nih.gov ）に関連する情報が記載されています。
language: en
publisher: National Institutes of Health
  type: Organization
  label: National Institute of Health @en
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20092628
distribution: Distribution
  access URL: http://geneticassociationdb.nih.gov/
landing page: http://geneticassociationdb.nih.gov/
theme: T0015
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: T0030
status: 運用終了
status: Closed @en

nbdc00927
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: BBID

nbdc00927
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: BBID

BBID
type: Dataset
alternative: Biological Biochemical Image Database
description: 生物学的パスウエイ、高分子構造、遺伝子ファミリー、細胞間相互作用に関する画像を収集したデータベースです。遺伝子名、パスウエイ名、細胞や組織、病名、生物学的機能名をキーワードとして検索できます。 cDNAアレイや機能的ゲノミクス、あるいはプロテオミクスの研究者を対象としたデータベースです。
description: BBID is a database of biological images. The database contains images of all sorts including pathways, structures, gene famies, and cellular structures. Users can search keyword or browse by represented genes or the entire list of available keywords. @en
language: en
publisher: National Institute on Aging
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://bbid.grc.nia.nih.gov/
theme: T0014
theme: T0015
theme: T0026
theme: T0013
theme: T0029
status: 休止
status: Inactive @en

nbdc00928
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: LactMed

nbdc00928
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: LactMed

LactMed
type: Dataset
alternative: Drugs and Lactation Database
description: 母乳育児中の母親が曝露するかも知れない薬や化学物質のデータベースで、母乳や乳幼児血液中のレベルと可能性のある副作用のほかに、代用可能な治療薬に関する情報を提供しています。すべてのデータには科学的根拠となる文献が明記されています。
description: LactMed is a database of toxins and metabolites which may be found in breast milk. The database contains manually curated entries on compounds in milk as reported in primary literature. Users can search compounds or chemicals by name or CAS. Additional support, including an app, are also available. @en
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17210549
landing page: http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?LACT
theme: T0012
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00929
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TOXNET

nbdc00929
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TOXNET

TOXNET
type: Dataset
alternative: Toxicology Data Network
description: TOXNET is a database of toxins and hazardous chemicals. The database contains entries on environmental health issues and related conditions. Users can search the database by keyword, use various support features, or access sub-databases related to toxicity and specific products or biological processes. @en
description: 毒性、有害危険化学物質、環境衛生、毒性排出に関するデータベース群を集めた毒性情報総合サイトです。 化合物名、病名、環境衛生に関するキーワードを入力すると、TOXNET上の全データベースを横断検索できます。
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/11164971
landing page: http://toxnet.nlm.nih.gov/
theme: T0015
theme: T0031
theme: T0020
theme: T0011
status: Active @en
status: 稼動中

nbdc00930
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: HSDB

nbdc00930
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: HSDB

HSDB
type: Dataset
alternative: Hazardous Substances Data Bank
description: HSDB is a database of hazardous substances. The database contains information on toxic compounds gathered from primary, peer-reviewed literature. Users can search by compound, CAS, or symptom. Fact sheets and other support are also available. @en
description: 5,000以上の潜在的危険有害化学物質の毒性に焦点を当てた毒性データファイルです。ヒト曝露値、産業衛生、緊急時の取扱手順、環境運命、法的要求事項やその他の関連事項情報などが収載されています。すべてのデータは、核となる文献、政府の公式文書、研究論文および選びぬかれた一流の雑誌文献から引用されています。
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14728459
references: http://rdf.ncbi.nlm.nih.gov/pubmed/8545846
landing page: http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?HSDB
theme: T0023
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00931
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: IRIS

nbdc00931
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: IRIS

IRIS
type: Dataset
alternative: Integrated Risk Information System
description: 500以上の化学物質のリスクアセスメントに役立つ情報が提供されています。データレコードは発ガン性のアセスメント (暴露度に関するリスクの推測) とレファレンスコード (有害物質への暴露、または人体に健康への影響が及ばないレベルの推測) に主眼がおかれています。消化吸入による暴露も対象となっており、また化学物質の規制情報の要約や物性値も含まれています。
description: IRIS is a database of hazardous substance identification and response information. The database contains response information for over 500 chemicals. Users can search by keyword, compound, CAS number, or symptom, or browse the database. @en
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10111413
landing page: http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?IRIS
theme: T0015
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00932
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: CCRIS

nbdc00932
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: CCRIS

CCRIS
type: Dataset
alternative: Chemical Carcinogenesis Research Information System @en
description: CCRIS is a database of carcinogenic information. The database contains information related to the cancer-causing potential of over 8,000 compounds. Users can search by keyword, chemical, or CAS number. @en
description: 8,000以上の化学物質の発がん性や変異原性、腫瘍プロモーション、助発ガン性などについての試験結果とその条件が集められています。一般的に受け入れられているプロトコルに従った研究からのデータが抽出されています。データは厳選された文献のレビュー、環境中に存在する化学物質の調査、NIHが出資した活動から抽出された研究結果です。
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?CCRIS
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00933
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: TOXLINE

nbdc00933
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: TOXLINE

TOXLINE
type: Dataset
alternative: Toxicology Literature Online
description: 毒性に関する文献データを収載したデータベースです。
description: TOXLINE is a database of toxicology literature. The database contains links to primary literature on the toxicity of chemical substances, which can be searched by name, keyword, or CAS number. @en
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/10298318
landing page: http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?TOXLINE
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00934
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-11-17
source: Integbio Database Catalog
primary topic: DART

nbdc00934
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2014-11-17
source: Integbio Database Catalog
primary topic: DART

DART
type: Dataset
alternative: Developmental and Reproductive Toxicology Database @en
description: 生殖毒性試験に関する文献データを収載したデータベースです。
description: DART is a database of toxicity pertaining to development and reproduction. The database contains information on compounds which have been shown to have an impact on the earliest stages of life, from conception through early development. Users can search by keyword, chemical, or CAS number. The database returns primary research articles about the search term @en
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://toxnet.nlm.nih.gov/newtoxnet/dart.htm
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00935
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: GENETOX

nbdc00935
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: GENETOX

GENETOX
type: Dataset
alternative: Genetic Toxicology Data Bank
description: 3,000以上の化学物質の遺伝毒性テストデータを収載しています。各物質について、実施された試験方法、ホスト、試験結果、文献情報等を確認できます。
description: gene-TOX is a database of toxic effects of chemical compounds on genetic material. The database contains entries on compounds and their potential negative effects on DNA. Users can search by compound and CAS. @en
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?GENETOX
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00936
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ITER

nbdc00936
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ITER

ITER
type: Dataset
alternative: International Toxicity Estimates for Risk
description: 世界の信頼ある研究グループから寄せられた600以上の化学物質の人体に及ぼすリスク情報を収載しています。
description: ITER is a database of risk information on chemical compounds. The database contains information on official statements about the harmful risks of hundreds of compounds. The database can be searched by affected tissue or system, chemical, or CAS number. @en
language: en
publisher: National Library of Medicine
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18655804
landing page: http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?iter
theme: T0011
theme: T0030
status: Active @en
status: 稼動中

nbdc00937
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-07-23
source: Integbio Database Catalog
primary topic: GtRNAdb

nbdc00937
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-07-22
source: Integbio Database Catalog
primary topic: GtRNAdb

GtRNAdb
type: Dataset
alternative: Genomic tRNA Database
description: ゲノム全塩基配列が決定された生物種について、tRNAscan-SEプログラム(Lowe & Eddy, 1997)によって予測されたtRNA遺伝子を収集しています。全てのアノテーションは自動的に付与されています。
description: GtRNAdb is a database of tRNA gene predictions made by an original program (tRNAscan-SE) on complete or nearly complete genomes. It contains automated annotation for genomes of Eukarya, Archaea and Bacteria. With automated sequence analysis, exceptions to general identification rules, isoacceptor type predictions (esp. due to variable post-transcriptional anticodon modification), and questionable tRNA identifications (due to pseudogenes, SINES, or other tRNA-derived elements) are found. @en
language: en
publisher: University of California
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/9023104
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18984615
distribution: Distribution
  description: legend.html
landing page: http://gtrnadb.ucsc.edu/
theme: T0021
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2157
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2759
theme: T0006
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/2
status: Active @en
status: 稼動中

nbdc00938
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: The Multi-Dimensional Human Embryo

nbdc00938
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: The Multi-Dimensional Human Embryo

The Multi-Dimensional Human Embryo
type: Dataset
description: 核磁気共鳴画像法(MRI)で撮影されたヒト胚の立体画像のデータベースです（アメリカ国立小児保健発育研究所(NICHD)資金提供）。ヒト胚画像コレクションはヒト発生研究に興味を持つ学生や研究者、臨床医、一般市民向けに提供しています。 11段階の発生時期の胎児の特徴や様々な方向から撮影された画像、360度回転動画、MRIによるX軸、Y軸方向の切片画像を見ることができます。
description: The Multi-Dimensional Human Embryo is a database for three-dimensional image reference of the human embryo based on magnetic resonance imaging. It contains images of embryo which is assigned a Carnegie stage (numbered from 1 to 23) based on its external features. This database also contains several major organs which were isolated from each T1-weighted embryo data set using image segmentation methods, then represented. Moreover, each embryo is optically photographed under a low-power microscope. @en
language: en
publisher: University of Michigan
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
landing page: http://embryo.soad.umich.edu/index.html
theme: T0014
theme: T0029
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00939
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: ChromatinDB

nbdc00939
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: ChromatinDB

ChromatinDB
type: Dataset
description: ChromatinDB is a database including genome-wide microarray data mapping patterns of histone modifications and other chromatin features for the model organism Saccharomyces cerevisiae. It provides the following features to enable exploration of chromatin regulatory mechanisms of yeast gene control. (1) The visualization tool of histone modification patterns and other chromatin features of selected genes. (2) The statistical analysis tool which allows the user to search for statistically significant patterns of enrichment in the histone modifications present in the genes that they have selected. (3) The data download tool which provides the user with easy access to the histone modification ChIP-microarray data sets that are stored in ChromatinDB. @en
description: 酵母のヒストン修飾やその他の染色体の特徴パターンをマッピングしたゲノムワイドChIPマイクロアレイデータを収集しています。遺伝子名とプロモーター領域あるいはORFを選択すると、その領域での22種類のヒストン修飾タイプ（例：リシンアセチル化）の平均相対濃縮率のグラフと表が表示されます。
language: en
publisher: Washington State University
  type: Organization
  address country: United States @en
  address country: アメリカ合衆国
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17485428
distribution: Distribution
  access URL: http://www.bioinformatics2.wsu.edu/cgi-bin/ChromatinDB/cgi/downloader_select.pl
landing page: http://www.bioinformatics2.wsu.edu/cgi-bin/ChromatinDB/cgi/visualize_select.pl
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0024
theme: T0001
theme: T0007
theme: T0002
status: 休止
status: Inactive @en

nbdc00940
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-07-31
source: Integbio Database Catalog
primary topic: IMPC

nbdc00940
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-07-31
source: Integbio Database Catalog
primary topic: IMPC

IMPC
type: Dataset
alternative: International Mouse Phenotyping Consortium
description: IMPC is a database about phenotyping of mouse mutants at protein-coding genes in the mouse using a combination of gene trapping and gene targeting in C57BL/6 mouse embryonic stem (ES) cells. It provides genotype-phenotype annotation, standard operating protocols, and the development of open source data analysis tools. Users are able to order the targeting vectors and mutant ES cells. Moreover, users are able to obtain mice, embryos, or sperm from mutant ES cells. @en
description: 国際マウス表現型解析コンソーシアム（IMPC）によるノックアウトマウスの網羅的表現型データを収集したデータベースです。国際マウスコンソーシアム （IKMC） により整備されたC57BL/6マウス由来のES細胞ライブラリーから約20,000個のノックアウトマウスを国際的な参画機関で分担して作製し、共通の基準・手法に基づいて網羅的に表現型を解析しています。遺伝子名、表現型アノテーション、解析手法などのデータが収録されており、遺伝子、表現型、ヒト疾患に関するリストから検索できます。また、目的の遺伝子をノックアウトしたマウスや、ミュータント作成のためのベクター、遺伝子トラップES細胞などを注文することが可能です。
language: en
publisher: International Mouse Phenotype Consortium
  type: Organization
  address country: Global
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17448981
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19525957
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17218247
landing page: http://www.mousephenotype.org
theme: T0014
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: T0005
theme: T0013
theme: T0017
theme: T0003
status: Active @en
status: 稼動中

nbdc00943
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RGRC

nbdc00943
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: RGRC

RGRC
type: Dataset
alternative: Rice Genome Resource Center (イネゲノムリソースセンター)
alternative: Rice Genome Resource Center @en
description: This is the home page for the Rice Genome Resource Center. It provides information regarding the distribution of full length rice cDNA clones (from NIAS DNA Bank) and of the Tos17 rice mutant strain. @en
description: イネゲノムリソースセンターのホームページです。イネ完全長cDNAクローン配布に関する情報と、イネ突然変異系統であるTos17突然変異系統のデータヘのリンク、研究材料の申し込み方法を記載しています。
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://www.rgrc.dna.affrc.go.jp/
landing page: http://www.rgrc.dna.affrc.go.jp/jp/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0014
theme: T0002
theme: T0017
status: Active @en
status: 稼動中

nbdc00945
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: The Rice Growth Monitoring System (アーカイブ)

nbdc00945
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: The Rice Growth Monitoring System (アーカイブ)

The Rice Growth Monitoring System (アーカイブ)
type: Dataset
title: The Rice Growth Monitoring System (Archive) @en
description: イネの発芽から開花までの生育画像を数分から数時間間隔で継続的に取得できる システムによる、表現型の網羅的解析結果のデータベースです。 国立研究開発法人 農業・食品産業技術総合研究機構によるオリジナルサイト（http: //www.gs.dna.affrc.go.jp/SY-1108/）の運用は終了致しました。引き続き生命科学系データベースアーカイブからThe Rice Growth Monitoring Systemをご利用いただけます。
description: This is a database of comprehensive analytical results derived from continuous monitoring of rice growth from sprouting to flowering, with images taken at intervals lasting from minutes to hours. The original site (http: //www.gs.dna.affrc.go.jp/SY-1108/) has been closed. The Rice Growth Monitoring System is available from LSDB archive site. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/14523250
distribution: Distribution
  description: README e.html
  description: README.html
  rights: lic.html
  access URL: https://dbarchive.biosciencedbc.jp/jp/agritogo-rice-phenome/download.html
  access URL: https://dbarchive.biosciencedbc.jp/en/agritogo-rice-phenome/download.html
landing page: https://dbarchive.biosciencedbc.jp/en/agritogo-rice-phenome/desc.html
landing page: https://dbarchive.biosciencedbc.jp/jp/agritogo-rice-phenome/desc.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0016
theme: T0014
theme: T0029
status: Active @en
status: 稼動中

nbdc00946
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: Genome Methylation Database

nbdc00946
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: Genome Methylation Database

Genome Methylation Database
type: Dataset
description: RLGS法によるイネ・シロイヌナズナゲノムのメチル化状況をまとめたデータベースです。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://lyso.gs.dna.affrc.go.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/3702
theme: T0001
status: 運用終了
status: Closed @en

nbdc00947
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: NIAS Oryza SNP Database

nbdc00947
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: NIAS Oryza SNP Database

NIAS Oryza SNP Database
type: Dataset
description: NIAS栽培イネコアコレクションと在来品種の多型情報データベースです。
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://oryza-snp.dna.affrc.go.jp/en/index_en.html
landing page: http://oryza-snp.dna.affrc.go.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0003
status: 運用終了
status: Closed @en

nbdc00948
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: RiceXPro

nbdc00948
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: RiceXPro

RiceXPro
type: Dataset
alternative: Rice Expression Profile Database
description: イネの遺伝子発現情報データベースです。
description: This is a database of gene expression profiles for rice. gene expression profiles were obtained through microarray analysis of naturally grown rice tissues and organs, hormone-processed rice plants, and cells and tissues isolated by laser microdissection. Chromosomal locations, expression levels at each developmental stage, and probe sequences can be viewed on this site. Data can be searched by keywords, chromosome number, or by BLAST. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21045061
references: http://rdf.ncbi.nlm.nih.gov/pubmed/21226959
landing page: http://ricexpro.dna.affrc.go.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0024
theme: T0002
status: Active @en
status: 稼動中

nbdc00949
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: Koshihikari vs Nipponbare SNP Database

nbdc00949
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-08-06
source: Integbio Database Catalog
primary topic: Koshihikari vs Nipponbare SNP Database

Koshihikari vs Nipponbare SNP Database
type: Dataset
description: コシヒカリと日本晴のSNP比較データベースです。
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20423466
landing page: http://koshigenome.dna.affrc.go.jp/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4530
theme: T0021
theme: T0003
status: 運用終了
status: Closed @en

nbdc00950
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2013-06-17
source: Integbio Database Catalog
primary topic: SGP

nbdc00950
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2017-01-30
source: Integbio Database Catalog
primary topic: SGP

SGP
type: Dataset
alternative: SILKWORM GENOME RESEARCH PROGRAM @en
description: This is the site of the Silkworm Genome Research Program, which provides genome information of silkworm in KAIKObase, and tools such as KAIKOBLAST for the Blast search, and KAIKOGASS for visualization of integrated annotation of genome scaffolds. @en
description: カイコゲノム研究プログラムのホームページです。物理地図情報、遺伝地図情報、EST (Expressed Sequence Tag)情報、およびゲノム配列情報のすべてを統合した統合データベースKAIKObaseと、KAIKOBLAST（BLAST検索）やKAIKOGASS（ゲノムスキャフォールド上にある遺伝子の予測アノテーション）などの解析ツールを公開しています。
language: ja
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20130748
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20060470
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20053988
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19836396
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20458474
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19793867
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19996320
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20077574
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19883703
references: http://rdf.ncbi.nlm.nih.gov/pubmed/20388903
landing page: http://sgp.dna.affrc.go.jp/
landing page: http://sgp.dna.affrc.go.jp/jp/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0031
theme: T0001
theme: T0007
theme: T0002
status: Active @en
status: 稼動中

nbdc00951
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-12-01
source: Integbio Database Catalog
primary topic: KAIKOcDNA

nbdc00951
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: KAIKOcDNA

KAIKOcDNA
type: Dataset
description: カイコcDNAの塩基配列データベースです。
description: This is a silkworm EST (cDNA) sequence database. Searches can be performed by clone name, gene ontology, or homology score. @en
language: en
publisher: 国立研究開発法人 農業・食品産業技術総合研究機構
  type: Organization
  label: National Agriculture and Food Research Organization @en
  address country: Japan @en
  address country: 日本
landing page: http://sgp.dna.affrc.go.jp/EST/
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7091
theme: T0002
theme: T0021
status: Active @en
status: 稼動中

nbdc00952
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2012-10-01
source: Integbio Database Catalog
primary topic: 作物学DATABASE

作物学DATABASE
type: Dataset
description: 作物関連の文献データベースです。
language: ja
language: en
publisher: 独立行政法人農業生物資源研究所
  type: Organization
  address country: 日本
landing page: http://mitochon.gs.dna.affrc.go.jp:81/csdb/
theme: T0030
status: 運用終了

nbdc00953
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2014-01-10
source: Integbio Database Catalog
primary topic: DGBY

nbdc00953
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2015-04-02
source: Integbio Database Catalog
primary topic: DGBY

DGBY
type: Dataset
alternative: Database for Gene function and expression of Baker's Yeast (パン酵母遺伝子データベース)
alternative: Database for Gene function and expression of Baker's Yeast @en
description: This database contains information on gene expression and function for baker's yeast. Using methods such as a comprehensive gene expression profile via a DNA microarray (transcriptomics) and comprehensive phenotypic profile via a yeast gene deletion strain library (phenomics), the database contains information on stress resistance-associated genes activated during breadmaking. @en
description: パン酵母のポストゲノム解析による遺伝子発現・遺伝子機能データベースです。DNA マイクロアレイを用いた網羅的遺伝子発現解析（トランスクリプトミクス）や酵母遺伝子破壊株セットを用いた網羅的表現型解析（フェノミクス）という手法を用いて製パン時のストレスに対するストレス耐性関連遺伝子の情報を収録しています。
language: ja
language: en
publisher: 国立研究開発法人農業・食品産業技術総合研究機構 食品総合研究所
  type: Organization
  label: National Agriculture and Food Research Organization,National Food Research Institute @en
  address country: Japan @en
  address country: 日本
references: http://rdf.ncbi.nlm.nih.gov/pubmed/18224659
references: http://rdf.ncbi.nlm.nih.gov/pubmed/17724779
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16943074
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16989656
references: http://rdf.ncbi.nlm.nih.gov/pubmed/19000619
references: http://rdf.ncbi.nlm.nih.gov/pubmed/16487347
landing page: http://www.naro.affrc.go.jp/org/nfri/yakudachi/yeast/index.html
landing page: http://www.naro.affrc.go.jp/org/nfri/english/Useful/yeast/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/4932
theme: T0016
theme: T0024
theme: T0001
status: Active @en
status: 稼動中

nbdc00954
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2018-08-02
source: Integbio Database Catalog
primary topic: Open TG-GATEs

nbdc00954
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2018-08-02
source: Integbio Database Catalog
primary topic: Open TG-GATEs

Open TG-GATEs
type: Dataset
description: Open TG-GATES is a toxicogenomics database. It stores gene expression data from rat liver and kidney samples (in vivo) and from primary rat and human hepatocytes (in vitro), after treatment with 170 drugs and chemical compounds. The database also contains associated toxicological data such as biochemical, blood and histopathological data. @en
description: 131化合物（医薬品等）のin vivo（ラットの肝臓と腎臓）およびin vitro（ヒトとラットの肝細胞） 暴露データ（遺伝子発現データ、毒性学データ）を集積したデータベースです。遺伝子発現データと毒性学データを関連づけして閲覧することができるとともに、絞り込んだ遺伝子発現データをファイルとしてダウンロードすることも可能です。
language: ja
language: en
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  label: National Institutes of Biomedical Innovation, Health and Nutrition @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: agreement.html
  access URL: http://toxico.nibiohn.go.jp/english/seika.html
  access URL: http://toxico.nibiohn.go.jp/seika.html
landing page: http://toxico.nibiohn.go.jp
landing page: http://toxico.nibiohn.go.jp/english/index.html
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10116
theme: T0015
theme: T0012
theme: T0024
theme: T0029
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00955
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-11
source: Integbio Database Catalog
primary topic: 難病研究資源バンク

nbdc00955
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-11
source: Integbio Database Catalog
primary topic: 難病研究資源バンク

難病研究資源バンク
type: Dataset
title: Rare Disease Bank @en
description: 厚生労働省の難治性疾患克服研究事業で収集された難病患者試料（DNA、細胞など）を集約・保管し、分譲を行うバンク事業のサイトです。試料データベースの利用には利用者登録が必要です。
description: Rare Disease Bank was established by the Ministry of Health, Labour and Welfare, Japan in 2009. The objective of the bank is to centralize rare disease (intractable disease) specimens (genomic DNA, serum, plasma, etc.) and impartially distribute them with quality control in order to promote rare disease researches. An institutional review board (IRB) evaluates submissions prior to collecting/distributing specimens. Users need to register to obtain detailed information of the specimens and to apply for distribution. @en
language: ja
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  label: National Institutes of Biomedical Innovation, Health and Nutrition @en
  address country: Japan @en
  address country: 日本
distribution: Distribution
  rights: copyright disclaimer.html
  access URL: http://raredis.nibiohn.go.jp/download/RDB_Feb2016.pdf
landing page: http://raredis.nibiohn.go.jp
theme: T0015
theme: T0001
theme: T0013
theme: T0017
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
status: Active @en
status: 稼動中

nbdc00956
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2016-04-11
source: Integbio Database Catalog
primary topic: メディカルバイオリソースデータベース

nbdc00956
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2011-12-08
language: ja
modified: 2016-04-11
source: Integbio Database Catalog
primary topic: メディカルバイオリソースデータベース

メディカルバイオリソースデータベース
type: Dataset
title: MBRDB @en
alternative: Medical Bioresource Database @en
description: このデータベースは、ヒトやマウスなどの医療用バイオリソース情報を収録しています。また、国立研究開発法人医薬基盤・健康・栄養研究所が提供する8つのデータベースを横断的に検索可能な医薬基盤研究所データベース横断検索システムを公開しています。
description: Medical Bioresource Database (MBRDB) is a database of localization and availability of biospecimens in Japan and facilitates a database cross-search system 10 databases in NIBIO (National Institute of Biomedical Innovation). MBRDB also provides political and ethical support and research results on issues of research use of human materials and information. @en
language: ja
publisher: 国立研究開発法人医薬基盤・健康・栄養研究所
  type: Organization
  label: National Institutes of Biomedical Innovation, Health and Nutrition @en
  address country: Japan @en
  address country: 日本
landing page: https://mbrdb.nibiohn.go.jp/cgi-bin/index.cgi
theme: T0014
theme: T0015
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/7955
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10114
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/35658
theme: T0001
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10026
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10090
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/10047
theme: T0002
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9606
theme: http://ddbj.nig.ac.jp/ontologies/taxonomy/9986
theme: T0005
theme: T0017
theme: T0003
status: Active @en
status: 稼動中

nbdc00957
type: CatalogRecord
creator: Integbio Database Catalog
issued: 2013-06-17
language: en
modified: 2017-10-30
source: Integbio Database Catalog
primary topic: nbdc00957