PubChemRDF Dataset Description
type: DatasetDescription
description: This is the VoID description for PubChemRDF datasets.
created by: http://pubchem.ncbi.nlm.nih.gov/rdf/
created on: 2013-11-18
primary topic: PubChemRDF

PubChemRDF
type: Dataset
description: The PubChem Compound, Substance, BioAssay databases in RDF format.
rights: disclaimer.html
bibliographic citation: citations.html
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/
uri lookup endpoint: pubchem
publisher: http://pubchem.ncbi.nlm.nih.gov/rdf
created: 2013-11-18
modified: 2024-12-31
subset: PubChemRDF compound subset
subset: PubChemRDF inchikey subset
subset: PubChemRDF descriptor subset
subset: PubChemRDF substance subset
subset: PubChemRDF synonym subset
subset: PubChemRDF bioassay subset
subset: PubChemRDF measure group subset
subset: PubChemRDF endpoint subset
subset: PubChemRDF protein subset
subset: PubChemRDF pathway subset
subset: PubChemRDF conserved domain subset
subset: PubChemRDF gene subset
subset: PubChemRDF source subset
subset: PubChemRDF reference subset
subset: PubChemRDF concept subset
subset: PubChemRDF patent subset
subset: PubChemRDF Cooperative Patent Classification (CPC)
subset: PubChemRDF International Patent Classification (IPC)
subset: PubChemRDF taxonomy subset
subset: PubChemRDF cell subset
subset: PubChemRDF disease subset
subset: PubChemRDF author subset
subset: PubChemRDF journal subset
subset: PubChemRDF book subset
subset: PubChemRDF grant subset
subset: PubChemRDF organization subset
subset: PubChemRDF cooccurrence subset
vocabulary: rdf-schema#
vocabulary: 22-rdf-syntax-ns#
vocabulary: XMLSchema#
vocabulary: obo
vocabulary: resource
vocabulary: terms
vocabulary: fabio
vocabulary: http://xmlns.com/foaf/0.1/
vocabulary: biopax-level3.owl#
vocabulary: core
vocabulary: pav
vocabulary: bao#
vocabulary: core#
vocabulary: cito
vocabulary: vocabulary#
frequency of change: weekly
feature: Turtle
triples: 19293469716
entities: 4415022769

PubChemRDF compound subset
type: Dataset
description: The compound subset contains RDF triples for outgoing links of a given CID.
subject: Molecule
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/compound/
uri lookup endpoint: compound
example resource: CID60823
data dump: pc compound2component.ttl.gz
data dump: pc compound2descriptor 000001.ttl.gz
data dump: pc compound2descriptor 000002.ttl.gz
data dump: pc compound2descriptor 000003.ttl.gz
data dump: pc compound2descriptor 000004.ttl.gz
data dump: pc compound2descriptor 000005.ttl.gz
data dump: pc compound2descriptor 000006.ttl.gz
data dump: pc compound2descriptor 000007.ttl.gz
data dump: pc compound2descriptor 000008.ttl.gz
data dump: pc compound2descriptor 000009.ttl.gz
data dump: pc compound2descriptor 000010.ttl.gz
data dump: pc compound2descriptor 000011.ttl.gz
data dump: pc compound2descriptor 000012.ttl.gz
data dump: pc compound2descriptor 000013.ttl.gz
data dump: pc compound2descriptor 000014.ttl.gz
data dump: pc compound2descriptor 000015.ttl.gz
data dump: pc compound2descriptor 000016.ttl.gz
data dump: pc compound2descriptor 000017.ttl.gz
data dump: pc compound2descriptor 000018.ttl.gz
data dump: pc compound2descriptor 000019.ttl.gz
data dump: pc compound2descriptor 000020.ttl.gz
data dump: pc compound2descriptor 000021.ttl.gz
data dump: pc compound2descriptor 000022.ttl.gz
data dump: pc compound2descriptor 000023.ttl.gz
data dump: pc compound2descriptor 000024.ttl.gz
data dump: pc compound2descriptor 000025.ttl.gz
data dump: pc compound2descriptor 000026.ttl.gz
data dump: pc compound2descriptor 000027.ttl.gz
data dump: pc compound2descriptor 000028.ttl.gz
data dump: pc compound2descriptor 000029.ttl.gz
data dump: pc compound2descriptor 000030.ttl.gz
data dump: pc compound2descriptor 000031.ttl.gz
data dump: pc compound2descriptor 000032.ttl.gz
data dump: pc compound2descriptor 000033.ttl.gz
data dump: pc compound2descriptor 000034.ttl.gz
data dump: pc compound2descriptor 000035.ttl.gz
data dump: pc compound2descriptor 000036.ttl.gz
data dump: pc compound2descriptor 000037.ttl.gz
data dump: pc compound2descriptor 000038.ttl.gz
data dump: pc compound2descriptor 000039.ttl.gz
data dump: pc compound2descriptor 000040.ttl.gz
data dump: pc compound2descriptor 000041.ttl.gz
data dump: pc compound2descriptor 000042.ttl.gz
data dump: pc compound2descriptor 000043.ttl.gz
data dump: pc compound2descriptor 000044.ttl.gz
data dump: pc compound2descriptor 000045.ttl.gz
data dump: pc compound2descriptor 000046.ttl.gz
data dump: pc compound2descriptor 000047.ttl.gz
data dump: pc compound2descriptor 000048.ttl.gz
data dump: pc compound2descriptor 000049.ttl.gz
data dump: pc compound2descriptor 000050.ttl.gz
data dump: pc compound2descriptor 000051.ttl.gz
data dump: pc compound2descriptor 000052.ttl.gz
data dump: pc compound2descriptor 000053.ttl.gz
data dump: pc compound2descriptor 000054.ttl.gz
data dump: pc compound2descriptor 000055.ttl.gz
data dump: pc compound2descriptor 000056.ttl.gz
data dump: pc compound2descriptor 000057.ttl.gz
data dump: pc compound2descriptor 000058.ttl.gz
data dump: pc compound2descriptor 000059.ttl.gz
data dump: pc compound2descriptor 000060.ttl.gz
data dump: pc compound2descriptor 000061.ttl.gz
data dump: pc compound2descriptor 000062.ttl.gz
data dump: pc compound2descriptor 000063.ttl.gz
data dump: pc compound2descriptor 000064.ttl.gz
data dump: pc compound2descriptor 000065.ttl.gz
data dump: pc compound2descriptor 000066.ttl.gz
data dump: pc compound2descriptor 000067.ttl.gz
data dump: pc compound2descriptor 000068.ttl.gz
data dump: pc compound2descriptor 000069.ttl.gz
data dump: pc compound2descriptor 000070.ttl.gz
data dump: pc compound2descriptor 000071.ttl.gz
data dump: pc compound2descriptor 000072.ttl.gz

PubChemRDF inchikey subset
type: Dataset
description: The inchikey subset contains RDF triples for the type, value and linkage of a given inchikey.
subject: Identifier
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/inchikey/
uri lookup endpoint: inchikey
example resource: XUKUURHRXDUEBC-KAYWLYCHSA-N
data dump: pc inchikey2compound 000001.ttl.gz
data dump: pc inchikey2compound 000002.ttl.gz
data dump: pc inchikey2compound 000003.ttl.gz
data dump: pc inchikey2compound 000004.ttl.gz
data dump: pc inchikey2compound 000005.ttl.gz
data dump: pc inchikey2compound 000006.ttl.gz
data dump: pc inchikey2compound 000007.ttl.gz
data dump: pc inchikey2compound 000008.ttl.gz
data dump: pc inchikey2compound 000009.ttl.gz
data dump: pc inchikey2compound 000010.ttl.gz
data dump: pc inchikey topic.ttl.gz
data dump: pc inchikey type 000001.ttl.gz
data dump: pc inchikey type 000002.ttl.gz
data dump: pc inchikey type 000003.ttl.gz
data dump: pc inchikey type 000004.ttl.gz
data dump: pc inchikey type 000005.ttl.gz
data dump: pc inchikey type 000006.ttl.gz
data dump: pc inchikey type 000007.ttl.gz
data dump: pc inchikey type 000008.ttl.gz
data dump: pc inchikey type 000009.ttl.gz
data dump: pc inchikey value 000001.ttl.gz
data dump: pc inchikey value 000002.ttl.gz
data dump: pc inchikey value 000003.ttl.gz
data dump: pc inchikey value 000004.ttl.gz
data dump: pc inchikey value 000005.ttl.gz
data dump: pc inchikey value 000006.ttl.gz
data dump: pc inchikey value 000007.ttl.gz
data dump: pc inchikey value 000008.ttl.gz
data dump: pc inchikey value 000009.ttl.gz
data dump: pc inchikey value 000010.ttl.gz
data dump: pc inchikey value 000011.ttl.gz
data dump: pc inchikey value 000012.ttl.gz
triples: 357224450
distinct subjects: 118949623

PubChemRDF descriptor subset
type: Dataset
description: The descriptor subset contains RDF triples for the type, value and linkage of a given chemical descriptor.
subject: Molecular descriptor
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/descriptor/
uri lookup endpoint: descriptor
example resource: CID60823 Molecular Weight
data dump: pc descr Complexity type 000001.ttl.gz
data dump: pc descr Complexity type 000002.ttl.gz
data dump: pc descr Complexity type 000003.ttl.gz
data dump: pc descr Complexity type 000004.ttl.gz
data dump: pc descr Complexity type 000005.ttl.gz
data dump: pc descr Complexity type 000006.ttl.gz
data dump: pc descr Complexity type 000007.ttl.gz
data dump: pc descr Complexity type 000008.ttl.gz
data dump: pc descr Complexity value 000001.ttl.gz
data dump: pc descr Complexity value 000002.ttl.gz
data dump: pc descr Complexity value 000003.ttl.gz
data dump: pc descr Complexity value 000004.ttl.gz
data dump: pc descr Complexity value 000005.ttl.gz
data dump: pc descr Complexity value 000006.ttl.gz
data dump: pc descr Complexity value 000007.ttl.gz
data dump: pc descr Complexity value 000008.ttl.gz
data dump: pc descr Complexity value 000009.ttl.gz
data dump: pc descr Complexity value 000010.ttl.gz
data dump: pc descr Compound Identifier type 000001.ttl.gz
data dump: pc descr Compound Identifier type 000002.ttl.gz
data dump: pc descr Compound Identifier type 000003.ttl.gz
data dump: pc descr Compound Identifier type 000004.ttl.gz
data dump: pc descr Compound Identifier type 000005.ttl.gz
data dump: pc descr Compound Identifier type 000006.ttl.gz
data dump: pc descr Compound Identifier type 000007.ttl.gz
data dump: pc descr Compound Identifier type 000008.ttl.gz
data dump: pc descr Compound Identifier value 000001.ttl.gz
data dump: pc descr Compound Identifier value 000002.ttl.gz
data dump: pc descr Compound Identifier value 000003.ttl.gz
data dump: pc descr Compound Identifier value 000004.ttl.gz
data dump: pc descr Compound Identifier value 000005.ttl.gz
data dump: pc descr Compound Identifier value 000006.ttl.gz
data dump: pc descr Compound Identifier value 000007.ttl.gz
data dump: pc descr Compound Identifier value 000008.ttl.gz
data dump: pc descr Compound Identifier value 000009.ttl.gz
data dump: pc descr Compound Identifier value 000010.ttl.gz
data dump: pc descr Compound Identifier value 000011.ttl.gz
data dump: pc descr CovalentUnitCount type 000001.ttl.gz
data dump: pc descr CovalentUnitCount type 000002.ttl.gz
data dump: pc descr CovalentUnitCount type 000003.ttl.gz
data dump: pc descr CovalentUnitCount type 000004.ttl.gz
data dump: pc descr CovalentUnitCount type 000005.ttl.gz
data dump: pc descr CovalentUnitCount type 000006.ttl.gz
data dump: pc descr CovalentUnitCount type 000007.ttl.gz
data dump: pc descr CovalentUnitCount type 000008.ttl.gz
data dump: pc descr CovalentUnitCount value 000001.ttl.gz
data dump: pc descr CovalentUnitCount value 000002.ttl.gz
data dump: pc descr CovalentUnitCount value 000003.ttl.gz
data dump: pc descr CovalentUnitCount value 000004.ttl.gz
data dump: pc descr CovalentUnitCount value 000005.ttl.gz
data dump: pc descr CovalentUnitCount value 000006.ttl.gz
data dump: pc descr CovalentUnitCount value 000007.ttl.gz
data dump: pc descr CovalentUnitCount value 000008.ttl.gz
data dump: pc descr CovalentUnitCount value 000009.ttl.gz
data dump: pc descr CovalentUnitCount value 000010.ttl.gz
data dump: pc descr CovalentUnitCount value 000011.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000001.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000002.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000003.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000004.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000005.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000006.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000007.ttl.gz
data dump: pc descr DefinedAtomStereoCount type 000008.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000001.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000002.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000003.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000004.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000005.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000006.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000007.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000008.ttl.gz
data dump: pc descr DefinedAtomStereoCount value 000009.ttl.gz

PubChemRDF substance subset
type: Dataset
description: The substance subset contains RDF triples for outgoing links of a given SID.
subject: Chemical substance
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/substance/
uri lookup endpoint: substance
example resource: SID103164874
data dump: pc substance2compound 000001.ttl.gz
data dump: pc substance2compound 000002.ttl.gz
data dump: pc substance2compound 000003.ttl.gz
data dump: pc substance2compound 000004.ttl.gz
data dump: pc substance2compound 000005.ttl.gz
data dump: pc substance2compound 000006.ttl.gz
data dump: pc substance2compound 000007.ttl.gz
data dump: pc substance2compound 000008.ttl.gz
data dump: pc substance2compound 000009.ttl.gz
data dump: pc substance2compound 000010.ttl.gz
data dump: pc substance2compound 000011.ttl.gz
data dump: pc substance2compound 000012.ttl.gz
data dump: pc substance2compound 000013.ttl.gz
data dump: pc substance2compound 000014.ttl.gz
data dump: pc substance2compound 000015.ttl.gz
data dump: pc substance2compound 000016.ttl.gz
data dump: pc substance2compound 000017.ttl.gz
data dump: pc substance2compound 000018.ttl.gz
data dump: pc substance2compound 000019.ttl.gz
data dump: pc substance2compound 000020.ttl.gz
data dump: pc substance2compound 000021.ttl.gz
data dump: pc substance2compound 000022.ttl.gz
data dump: pc substance2compound 000023.ttl.gz
data dump: pc substance2compound 000024.ttl.gz
data dump: pc substance2compound 000025.ttl.gz
data dump: pc substance2compound 000026.ttl.gz
data dump: pc substance2descriptor 000001.ttl.gz
data dump: pc substance2descriptor 000002.ttl.gz
data dump: pc substance2descriptor 000003.ttl.gz
data dump: pc substance2descriptor 000004.ttl.gz
data dump: pc substance2descriptor 000005.ttl.gz
data dump: pc substance2descriptor 000006.ttl.gz
data dump: pc substance2descriptor 000007.ttl.gz
data dump: pc substance2descriptor 000008.ttl.gz
data dump: pc substance2descriptor 000009.ttl.gz
data dump: pc substance2descriptor 000010.ttl.gz
data dump: pc substance2descriptor 000011.ttl.gz
data dump: pc substance2descriptor 000012.ttl.gz
data dump: pc substance2descriptor 000013.ttl.gz
data dump: pc substance2descriptor 000014.ttl.gz
data dump: pc substance2descriptor 000015.ttl.gz
data dump: pc substance2descriptor 000016.ttl.gz
data dump: pc substance2descriptor 000017.ttl.gz
data dump: pc substance2descriptor 000018.ttl.gz
data dump: pc substance2descriptor 000019.ttl.gz
data dump: pc substance2descriptor 000020.ttl.gz
data dump: pc substance2descriptor 000021.ttl.gz
data dump: pc substance2descriptor 000022.ttl.gz
data dump: pc substance2descriptor 000023.ttl.gz
data dump: pc substance2descriptor 000024.ttl.gz
data dump: pc substance2descriptor 000025.ttl.gz
data dump: pc substance2descriptor 000026.ttl.gz
data dump: pc substance2descriptor 000027.ttl.gz
data dump: pc substance2descriptor 000028.ttl.gz
data dump: pc substance2descriptor 000029.ttl.gz
data dump: pc substance2descriptor 000030.ttl.gz
data dump: pc substance2descriptor 000031.ttl.gz
data dump: pc substance2descriptor 000032.ttl.gz
data dump: pc substance2descriptor 000033.ttl.gz
data dump: pc substance2descriptor 000034.ttl.gz
data dump: pc substance2descriptor 000035.ttl.gz
data dump: pc substance2descriptor 000036.ttl.gz
data dump: pc substance2descriptor 000037.ttl.gz
data dump: pc substance2descriptor 000038.ttl.gz
data dump: pc substance2descriptor 000039.ttl.gz
data dump: pc substance2descriptor 000040.ttl.gz
data dump: pc substance2descriptor 000041.ttl.gz
data dump: pc substance2descriptor 000042.ttl.gz
data dump: pc substance2descriptor 000043.ttl.gz
data dump: pc substance2descriptor 000044.ttl.gz
data dump: pc substance2descriptor 000045.ttl.gz
data dump: pc substance2descriptor 000046.ttl.gz
data dump: pc substance2measuregroup 000001.ttl.gz

PubChemRDF synonym subset
type: Dataset
description: The synonym subset contains RDF triples for the type, value and linkage of a given synonym.
subject: Synonym
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/synonym/
uri lookup endpoint: synonym
data dump: pc synonym2compound 000001.ttl.gz
data dump: pc synonym2compound 000002.ttl.gz
data dump: pc synonym2compound 000003.ttl.gz
data dump: pc synonym2compound 000004.ttl.gz
data dump: pc synonym2compound 000005.ttl.gz
data dump: pc synonym2compound 000006.ttl.gz
data dump: pc synonym2compound 000007.ttl.gz
data dump: pc synonym2compound 000008.ttl.gz
data dump: pc synonym2compound 000009.ttl.gz
data dump: pc synonym topic.ttl.gz
data dump: pc synonym type 000001.ttl.gz
data dump: pc synonym type 000002.ttl.gz
data dump: pc synonym type 000003.ttl.gz
data dump: pc synonym type 000004.ttl.gz
data dump: pc synonym type 000005.ttl.gz
data dump: pc synonym type 000006.ttl.gz
data dump: pc synonym type 000007.ttl.gz
data dump: pc synonym type 000008.ttl.gz
data dump: pc synonym type 000009.ttl.gz
data dump: pc synonym type 000010.ttl.gz
data dump: pc synonym type 000011.ttl.gz
data dump: pc synonym type 000012.ttl.gz
data dump: pc synonym type 000013.ttl.gz
data dump: pc synonym type 000014.ttl.gz
data dump: pc synonym type 000015.ttl.gz
data dump: pc synonym type 000016.ttl.gz
data dump: pc synonym type 000017.ttl.gz
data dump: pc synonym value 000001.ttl.gz
data dump: pc synonym value 000002.ttl.gz
data dump: pc synonym value 000003.ttl.gz
data dump: pc synonym value 000004.ttl.gz
data dump: pc synonym value 000005.ttl.gz
data dump: pc synonym value 000006.ttl.gz
data dump: pc synonym value 000007.ttl.gz
data dump: pc synonym value 000008.ttl.gz
data dump: pc synonym value 000009.ttl.gz
data dump: pc synonym value 000010.ttl.gz
data dump: pc synonym value 000011.ttl.gz
data dump: pc synonym value 000012.ttl.gz
data dump: pc synonym value 000013.ttl.gz
data dump: pc synonym value 000014.ttl.gz
data dump: pc synonym value 000015.ttl.gz
data dump: pc synonym value 000016.ttl.gz
data dump: pc synonym value 000017.ttl.gz
data dump: pc synonym value 000018.ttl.gz
data dump: pc synonym value 000019.ttl.gz
triples: 538175322
distinct subjects: 215096143

PubChemRDF bioassay subset
type: Dataset
description: The bioassay subset contains RDF triples for general information like title and source, as well as measure group of a given AID.
subject: Bioassay
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/bioassay/
uri lookup endpoint: bioassay
example resource: AID1788
data dump: pc bioassay.ttl.gz
triples: 10100362
distinct subjects: 1675847

PubChemRDF measure group subset
type: Dataset
description: The measure group subset contains RDF triples for related bioassay, substance, protein targets, endpoints of a given AID.
subject: Bioassay
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/measuregroup/
uri lookup endpoint: measuregroup
example resource: AID1788 1
example resource: AID443491
example resource: AID363 PMID10395478
data dump: pc measuregroup2endpoint 000001.ttl.gz
data dump: pc measuregroup2endpoint 000002.ttl.gz
data dump: pc measuregroup2endpoint 000003.ttl.gz
data dump: pc measuregroup2endpoint 000004.ttl.gz
data dump: pc measuregroup2endpoint 000005.ttl.gz
data dump: pc measuregroup2endpoint 000006.ttl.gz
data dump: pc measuregroup2endpoint 000007.ttl.gz
data dump: pc measuregroup2endpoint 000008.ttl.gz
data dump: pc measuregroup2endpoint 000009.ttl.gz
data dump: pc measuregroup2endpoint 000010.ttl.gz
data dump: pc measuregroup2endpoint 000011.ttl.gz
data dump: pc measuregroup2endpoint 000012.ttl.gz
data dump: pc measuregroup2endpoint 000013.ttl.gz
data dump: pc measuregroup2participant.ttl.gz
data dump: pc measuregroup source.ttl.gz
data dump: pc measuregroup title.ttl.gz
data dump: pc measuregroup type.ttl.gz
triples: 274160169
distinct subjects: 1700977

PubChemRDF endpoint subset
type: Dataset
description: The endpoint subset contains RDF triples for the related measure group and substance, as well as type, value, unit of a given endpoint.
subject: Biological activity
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/endpoint/
uri lookup endpoint: endpoint
example resource: SID99445338 AID2202 1
example resource: SID103164874 AID443491
example resource: SID8033500 AID363 PMID10395478
data dump: pc endpoint2reference.ttl.gz
data dump: pc endpoint2substance 000001.ttl.gz
data dump: pc endpoint2substance 000002.ttl.gz
data dump: pc endpoint2substance 000003.ttl.gz
data dump: pc endpoint2substance 000004.ttl.gz
data dump: pc endpoint2substance 000005.ttl.gz
data dump: pc endpoint2substance 000006.ttl.gz
data dump: pc endpoint2substance 000007.ttl.gz
data dump: pc endpoint2substance 000008.ttl.gz
data dump: pc endpoint2substance 000009.ttl.gz
data dump: pc endpoint2substance 000010.ttl.gz
data dump: pc endpoint2substance 000011.ttl.gz
data dump: pc endpoint2substance 000012.ttl.gz
data dump: pc endpoint2substance 000013.ttl.gz
data dump: pc endpoint2substance 000014.ttl.gz
data dump: pc endpoint2substance 000015.ttl.gz
data dump: pc endpoint2substance 000016.ttl.gz
data dump: pc endpoint2substance 000017.ttl.gz
data dump: pc endpoint2substance 000018.ttl.gz
data dump: pc endpoint2substance 000019.ttl.gz
data dump: pc endpoint2substance 000020.ttl.gz
data dump: pc endpoint2substance 000021.ttl.gz
data dump: pc endpoint2substance 000022.ttl.gz
data dump: pc endpoint label.ttl.gz
data dump: pc endpoint outcome 000001.ttl.gz
data dump: pc endpoint outcome 000002.ttl.gz
data dump: pc endpoint outcome 000003.ttl.gz
data dump: pc endpoint outcome 000004.ttl.gz
data dump: pc endpoint outcome 000005.ttl.gz
data dump: pc endpoint outcome 000006.ttl.gz
data dump: pc endpoint outcome 000007.ttl.gz
data dump: pc endpoint outcome 000008.ttl.gz
data dump: pc endpoint outcome 000009.ttl.gz
data dump: pc endpoint outcome 000010.ttl.gz
data dump: pc endpoint outcome 000011.ttl.gz
data dump: pc endpoint outcome 000012.ttl.gz
data dump: pc endpoint outcome 000013.ttl.gz
data dump: pc endpoint outcome 000014.ttl.gz
data dump: pc endpoint outcome 000015.ttl.gz
data dump: pc endpoint outcome 000016.ttl.gz
data dump: pc endpoint outcome 000017.ttl.gz
data dump: pc endpoint outcome 000018.ttl.gz
data dump: pc endpoint outcome 000019.ttl.gz
data dump: pc endpoint outcome 000020.ttl.gz
data dump: pc endpoint outcome 000021.ttl.gz
data dump: pc endpoint outcome 000022.ttl.gz
data dump: pc endpoint outcome 000023.ttl.gz
data dump: pc endpoint type.ttl.gz
data dump: pc endpoint unit.ttl.gz
data dump: pc endpoint value.ttl.gz
triples: 600611967
distinct subjects: 267016286

PubChemRDF protein subset
type: Dataset
description: The protein subset contains RDF triples for the general information, related measure groups, and neighboring relations of a given ACC.
subject: Protein
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/protein/
uri lookup endpoint: protein
example resource: ACCAAI32976
data dump: pc protein.ttl.gz
triples: 11361389
distinct subjects: 755880

PubChemRDF pathway subset
type: Dataset
description: The pathway subset contains RDF triples for the type, title, data source, organism, references, and participant (e.g. proteins, genes, and chemicals).
subject: Pathway
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/pathway/
uri lookup endpoint: pathway
example resource: PWID10790
data dump: pc pathway.ttl.gz
triples: 2529286
distinct subjects: 80774

PubChemRDF conserved domain subset
type: Dataset
description: The conserved domain subset contains RDF triples for the general information and the related proteins tested in measure groups of a given PSSMID.
subject: Protein domain
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/conserveddomain/
uri lookup endpoint: conserveddomain
example resource: PSSMID132758
data dump: pc conserveddomain.ttl.gz
triples: 449596
distinct subjects: 50850

PubChemRDF gene subset
type: Dataset
description: The gene subset contains RDF triples for the general information and the related proteins tested in measure groups of a given gene ID.
subject: Gene
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/gene/
uri lookup endpoint: gene
example resource: GID367
data dump: pc gene.ttl.gz
triples: 17222901
distinct subjects: 1927136

PubChemRDF source subset
type: Dataset
description: The source subset contains RDF triples for the general information of a given depositor.
subject: The Contributor
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/source/
uri lookup endpoint: source
example resource: ChEMBL
data dump: pc source.ttl.gz
triples: 5385
distinct subjects: 1022

PubChemRDF reference subset
type: Dataset
description: The reference subset contains RDF triples for the type and basic metadata of a given literature in PubChem.
subject: Reference
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/reference/
uri lookup endpoint: reference
example resource: http://rdf.ncbi.nlm.nih.gov/pubchem/reference/29735236
data dump: pc reference2meshheading 000001.ttl.gz
data dump: pc reference2meshheading 000002.ttl.gz
data dump: pc reference2meshheading 000003.ttl.gz
data dump: pc reference2meshheading 000004.ttl.gz
data dump: pc reference2meshheading 000005.ttl.gz
data dump: pc reference2meshheading 000006.ttl.gz
data dump: pc reference2meshheading 000007.ttl.gz
data dump: pc reference2meshheading 000008.ttl.gz
data dump: pc reference2meshheading 000009.ttl.gz
data dump: pc reference2meshheading 000010.ttl.gz
data dump: pc reference author 000001.ttl.gz
data dump: pc reference author 000002.ttl.gz
data dump: pc reference author 000003.ttl.gz
data dump: pc reference author 000004.ttl.gz
data dump: pc reference author 000005.ttl.gz
data dump: pc reference author 000006.ttl.gz
data dump: pc reference author 000007.ttl.gz
data dump: pc reference author 000008.ttl.gz
data dump: pc reference author 000009.ttl.gz
data dump: pc reference author 000010.ttl.gz
data dump: pc reference author 000011.ttl.gz
data dump: pc reference author 000012.ttl.gz
data dump: pc reference author 000013.ttl.gz
data dump: pc reference author 000014.ttl.gz
data dump: pc reference author 000015.ttl.gz
data dump: pc reference author 000016.ttl.gz
data dump: pc reference author 000017.ttl.gz
data dump: pc reference author 000018.ttl.gz
data dump: pc reference author 000019.ttl.gz
data dump: pc reference author 000020.ttl.gz
data dump: pc reference author 000021.ttl.gz
data dump: pc reference author 000022.ttl.gz
data dump: pc reference citation 000001.ttl.gz
data dump: pc reference citation 000002.ttl.gz
data dump: pc reference citation 000003.ttl.gz
data dump: pc reference citation 000004.ttl.gz
data dump: pc reference citation 000005.ttl.gz
data dump: pc reference citation 000006.ttl.gz
data dump: pc reference citation 000007.ttl.gz
data dump: pc reference citation 000008.ttl.gz
data dump: pc reference citation 000009.ttl.gz
data dump: pc reference citation 000010.ttl.gz
data dump: pc reference citation 000011.ttl.gz
data dump: pc reference citation 000012.ttl.gz
data dump: pc reference citation 000013.ttl.gz
data dump: pc reference contenttype.ttl.gz
data dump: pc reference date.ttl.gz
data dump: pc reference discusses by textming 000001.ttl.gz
data dump: pc reference discusses by textming 000002.ttl.gz
data dump: pc reference discusses by textming 000003.ttl.gz
data dump: pc reference discusses by textming 000004.ttl.gz
data dump: pc reference discusses by textming 000005.ttl.gz
data dump: pc reference discusses by textming 000006.ttl.gz
data dump: pc reference discusses by textming 000007.ttl.gz
data dump: pc reference discusses by textming 000008.ttl.gz
data dump: pc reference discusses by textming 000009.ttl.gz
data dump: pc reference discusses by textming 000010.ttl.gz
data dump: pc reference discusses by textming 000011.ttl.gz
data dump: pc reference discusses by textming 000012.ttl.gz
data dump: pc reference discusses by textming 000013.ttl.gz
data dump: pc reference endingpage 000001.ttl.gz
data dump: pc reference endingpage 000002.ttl.gz
data dump: pc reference endingpage 000003.ttl.gz
data dump: pc reference fundingagency 000001.ttl.gz
data dump: pc reference fundingagency 000002.ttl.gz
data dump: pc reference grant 000001.ttl.gz
data dump: pc reference grant 000002.ttl.gz
data dump: pc reference identifier 000001.ttl.gz
data dump: pc reference identifier 000002.ttl.gz
data dump: pc reference identifier 000003.ttl.gz
data dump: pc reference identifier 000004.ttl.gz
data dump: pc reference identifier 000005.ttl.gz
data dump: pc reference identifier 000006.ttl.gz

PubChemRDF author subset
type: Dataset
description: The author subset contains RDF triples for the basic metadata of authors of a given literature in PubChem.
subject: Author
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/author/
uri lookup endpoint: author
example resource: ORCID 0000-0001-5527-6993
data dump: pc author 000001.ttl.gz
data dump: pc author 000002.ttl.gz
data dump: pc author 000003.ttl.gz
data dump: pc author 000004.ttl.gz
data dump: pc author 000005.ttl.gz
data dump: pc author 000006.ttl.gz
data dump: pc author 000007.ttl.gz
data dump: pc author 000008.ttl.gz
data dump: pc author 000009.ttl.gz
data dump: pc author 000010.ttl.gz
data dump: pc author 000011.ttl.gz
data dump: pc author 000012.ttl.gz
data dump: pc author 000013.ttl.gz
data dump: pc author 000014.ttl.gz
data dump: pc author 000015.ttl.gz
triples: 131484771
distinct subjects: 29287763

PubChemRDF book subset
type: Dataset
description: The book subset contains RDF triples for the basic metadata of books in NCBI Bookshelf.
subject: Book
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/book/
uri lookup endpoint: book
example resource: NBK1116
data dump: pc book 000001.ttl.gz
triples: 65629
distinct subjects: 6406

PubChemRDF journal subset
type: Dataset
description: The journal subset contains RDF triples for the basic metadata of PubMed and NCBI molecular biology database journals.
subject: Journal
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/journal/
uri lookup endpoint: journal
example resource: http://rdf.ncbi.nlm.nih.gov/pubchem/journal/4938
data dump: pc journal 000001.ttl.gz
triples: 247874
distinct subjects: 39859

PubChemRDF grant subset
type: Dataset
description: The grant subset contains RDF triples for the basic metadata of grant information from literature.
subject: Grant
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/grant/
uri lookup endpoint: grant
data dump: pc grant 000001.ttl.gz
triples: 5004249
distinct subjects: 1668083

PubChemRDF organization subset
type: Dataset
description: The organization subset contains RDF triples for the basic metadata of author affiliation information from literature.
subject: Organization
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/organization/
uri lookup endpoint: organization
data dump: pc organization 000001.ttl.gz
triples: 6166382
distinct subjects: 1965854

PubChemRDF concept subset
type: Dataset
description: The concept subset contains RDF triples for the type and basic metadata of a given biomedical concept.
subject: Concept
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/concept/
uri lookup endpoint: concept
example resource: ATC A
data dump: pc concept.ttl.gz
triples: 30065
distinct subjects: 6027

PubChemRDF patent subset
type: Dataset
description: The patent subset contains RDF triples for the type and basic metadata of a given patent.
subject: Patent
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/patent/
uri lookup endpoint: patent
example resource: US-4206219-A
data dump: pc patent2abstract 000001.ttl.gz
data dump: pc patent2abstract 000002.ttl.gz
data dump: pc patent2abstract 000003.ttl.gz
data dump: pc patent2abstract 000004.ttl.gz
data dump: pc patent2abstract 000005.ttl.gz
data dump: pc patent2abstract 000006.ttl.gz
data dump: pc patent2abstract 000007.ttl.gz
data dump: pc patent2abstract 000008.ttl.gz
data dump: pc patent2abstract 000009.ttl.gz
data dump: pc patent2abstract 000010.ttl.gz
data dump: pc patent2abstract 000011.ttl.gz
data dump: pc patent2abstract 000012.ttl.gz
data dump: pc patent2abstract 000013.ttl.gz
data dump: pc patent2abstract 000014.ttl.gz
data dump: pc patent2abstract 000015.ttl.gz
data dump: pc patent2abstract 000016.ttl.gz
data dump: pc patent2abstract 000017.ttl.gz
data dump: pc patent2abstract 000018.ttl.gz
data dump: pc patent2abstract 000019.ttl.gz
data dump: pc patent2abstract 000020.ttl.gz
data dump: pc patent2abstract 000021.ttl.gz
data dump: pc patent2abstract 000022.ttl.gz
data dump: pc patent2abstract 000023.ttl.gz
data dump: pc patent2abstract 000024.ttl.gz
data dump: pc patent2abstract 000025.ttl.gz
data dump: pc patent2abstract 000026.ttl.gz
data dump: pc patent2abstract 000027.ttl.gz
data dump: pc patent2abstract 000028.ttl.gz
data dump: pc patent2abstract 000029.ttl.gz
data dump: pc patent2assigneevc 000001.ttl.gz
data dump: pc patent2assigneevc 000002.ttl.gz
data dump: pc patent2assigneevc 000003.ttl.gz
data dump: pc patent2assigneevc 000004.ttl.gz
data dump: pc patent2cpc additional 000001.ttl.gz
data dump: pc patent2cpc additional 000002.ttl.gz
data dump: pc patent2cpc additional 000003.ttl.gz
data dump: pc patent2cpc inventive 000001.ttl.gz
data dump: pc patent2cpc inventive 000002.ttl.gz
data dump: pc patent2cpc inventive 000003.ttl.gz
data dump: pc patent2cpc inventive 000004.ttl.gz
data dump: pc patent2cpc inventive 000005.ttl.gz
data dump: pc patent2filingdate 000001.ttl.gz
data dump: pc patent2filingdate 000002.ttl.gz
data dump: pc patent2filingdate 000003.ttl.gz
data dump: pc patent2grantdate 000001.ttl.gz
data dump: pc patent2grantdate 000002.ttl.gz
data dump: pc patent2inventorvc 000001.ttl.gz
data dump: pc patent2inventorvc 000002.ttl.gz
data dump: pc patent2inventorvc 000003.ttl.gz
data dump: pc patent2inventorvc 000004.ttl.gz
data dump: pc patent2inventorvc 000005.ttl.gz
data dump: pc patent2inventorvc 000006.ttl.gz
data dump: pc patent2ipc additional 000001.ttl.gz
data dump: pc patent2ipc inventive 000001.ttl.gz
data dump: pc patent2ipc inventive 000002.ttl.gz
data dump: pc patent2ipc inventive 000003.ttl.gz
data dump: pc patent2ipc inventive 000004.ttl.gz
data dump: pc patent2ipc inventive 000005.ttl.gz
data dump: pc patent2ipc inventive 000006.ttl.gz
data dump: pc patent2iscitedby 000001.ttl.gz
data dump: pc patent2iscitedby 000002.ttl.gz
data dump: pc patent2iscitedby 000003.ttl.gz
data dump: pc patent2iscitedby 000004.ttl.gz
data dump: pc patent2iscitedby 000005.ttl.gz
data dump: pc patent2iscitedby 000006.ttl.gz
data dump: pc patent2iscitedby 000007.ttl.gz
data dump: pc patent2iscitedby 000008.ttl.gz
data dump: pc patent2iscitedby 000009.ttl.gz
data dump: pc patent2iscitedby 000010.ttl.gz
data dump: pc patent2iscitedby 000011.ttl.gz
data dump: pc patent2isdiscussedby 000001.ttl.gz
data dump: pc patent2isdiscussedby 000002.ttl.gz
data dump: pc patent2isdiscussedby 000003.ttl.gz

PubChemRDF Cooperative Patent Classification (CPC)
type: Dataset
description: The patent subset contains RDF triples for Cooperative Patent Classification (CPC).
subject: Cooperative Patent Classification
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/patentcpc/
uri lookup endpoint: patentcpc
example resource: A01H1-02
data dump: pc patentcpc.ttl.gz
triples: 1745692
distinct subjects: 261326

PubChemRDF International Patent Classification (IPC)
type: Dataset
description: The patent subset contains RDF triples for International Patent Classification (IPC).
subject: International Patent Classification
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/patentipc/
uri lookup endpoint: patentipc
example resource: http://rdf.ncbi.nlm.nih.gov/pubchem/patentipc/C01B13-30
data dump: pc patentipc.ttl.gz
triples: 397434
distinct subjects: 79492

PubChemRDF taxonomy subset
type: Dataset
description: The taxonomy subset contains RDF triples for the type, title, and closeMatch.
subject: Taxonomy
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/taxonomy/
uri lookup endpoint: taxonomy
example resource: TAXID1956
data dump: pc taxonomy.ttl.gz
triples: 4192360
distinct subjects: 3138964

PubChemRDF cell subset
type: Dataset
description: The cell subset contains RDF triples for cell line data in PubChem.
subject: Cell Line
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/cell/
uri lookup endpoint: cell
example resource: http://rdf.ncbi.nlm.nih.gov/pubchem/cell/C01B13-30
data dump: pc cell.ttl.gz
triples: 672837
distinct subjects: 161646

PubChemRDF disease subset
type: Dataset
description: The disease subset contains RDF triples for disease data in PubChem.
subject: Disease
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/disease/
uri lookup endpoint: disease
example resource: DZID8805
data dump: pc disease.ttl.gz
triples: 166415
distinct subjects: 11705

PubChemRDF cooccurrence subset
type: Dataset
description: The cooccurrence subset contains RDF triples of the named entities that are occurring together in biomedical liteature.
subject: Co-occurrence
uri space: http://rdf.ncbi.nlm.nih.gov/pubchem/cooccurrence/
uri lookup endpoint: cooccurrence
example resource: CID3672 CID1983
data dump: pc cooccurrence chemical and chemical 000001.ttl.gz
data dump: pc cooccurrence chemical and chemical 000002.ttl.gz
data dump: pc cooccurrence chemical and chemical 000003.ttl.gz
data dump: pc cooccurrence chemical and chemical 000004.ttl.gz
data dump: pc cooccurrence chemical and chemical 000005.ttl.gz
data dump: pc cooccurrence chemical and chemical 000006.ttl.gz
data dump: pc cooccurrence chemical and chemical 000007.ttl.gz
data dump: pc cooccurrence chemical and disease 000001.ttl.gz
data dump: pc cooccurrence chemical and disease 000002.ttl.gz
data dump: pc cooccurrence chemical and disease 000003.ttl.gz
data dump: pc cooccurrence chemical and gene 000001.ttl.gz
data dump: pc cooccurrence chemical and gene 000002.ttl.gz
data dump: pc cooccurrence chemical and gene 000003.ttl.gz
data dump: pc cooccurrence chemical and gene 000004.ttl.gz
data dump: pc cooccurrence chemical and gene 000005.ttl.gz
data dump: pc cooccurrence chemical and gene 000006.ttl.gz
data dump: pc cooccurrence chemical and gene 000007.ttl.gz
data dump: pc cooccurrence disease and disease 000001.ttl.gz
data dump: pc cooccurrence disease and disease 000002.ttl.gz
data dump: pc cooccurrence gene and disease 000001.ttl.gz
data dump: pc cooccurrence gene and disease 000002.ttl.gz
data dump: pc cooccurrence gene and disease 000003.ttl.gz
data dump: pc cooccurrence gene and disease 000004.ttl.gz
data dump: pc cooccurrence gene and gene 000001.ttl.gz
data dump: pc cooccurrence gene and gene 000002.ttl.gz
data dump: pc cooccurrence gene and gene 000003.ttl.gz
data dump: pc cooccurrence gene and gene 000004.ttl.gz
data dump: pc cooccurrence gene and gene 000005.ttl.gz
triples: 301442500
distinct subjects: 60288500