ABCD curated depository of sequenced antibodies
type: Database
abbreviation: ABCD
category: Protocols and materials databases
link is explicit: true
url template: https://web.expasy.org/cgi-bin/abcd/search_abcd.pl

The Alliance of Genome Resources
type: Database
abbreviation: AGR
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31552413
url template: https://alliancegenome.org/gene/%s

Allergome; a platform for allergen knowledge
type: Database
abbreviation: Allergome
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/19671381
url template: https://www.allergome.org/script/dettaglio.php

AlphaFold Protein Structure Database
type: Database
abbreviation: AlphaFoldDB
category: 3D structure databases
link is explicit: true
citation: http://purl.uniprot.org/citations/34791371
url template: https://alphafold.ebi.ac.uk/entry/%u

Antibodypedia a portal for validated antibodies
type: Database
abbreviation: Antibodypedia
category: Protocols and materials databases
link is explicit: true
citation: http://purl.uniprot.org/citations/18667413
url template: https://antibodypedia.com/gene/%s

ArachnoServer: Spider toxin database
type: Database
abbreviation: ArachnoServer
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29069336
url template: http://www.arachnoserver.org

Arabidopsis Information Portal
type: Database
abbreviation: Araport
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25414324
url template: https://bar.utoronto.ca/thalemine/portal.do

Bgee dataBase for Gene Expression Evolution
type: Database
abbreviation: Bgee
category: Gene expression databases
link is explicit: true
citation: SIPA92E437F3CD7880E
url template: https://bgee.org/gene/%s

BindingDB database of measured binding affinities
type: Database
abbreviation: BindingDB
category: Chemistry databases
link is explicit: true
citation: http://purl.uniprot.org/citations/26481362
url template: https://www.bindingdb.org/uniprot/%u

BioCyc Collection of Pathway/Genome Databases
type: Database
abbreviation: BioCyc
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/26527732
url template: https://biocyc.org/getid

The Biological General Repository for Interaction Datasets (BioGRID)
type: Database
abbreviation: BioGRID
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/21071413
url template: https://thebiogrid.org/%s

BioGRID ORCS database of CRISPR phenotype screens
type: Database
abbreviation: BioGRID-ORCS
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30476227
url template: https://orcs.thebiogrid.org/Gene/%s

BioMuta curated single-nucleotide variation and disease association database
type: Database
abbreviation: BioMuta
category: Genetic variation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24667251
url template: https://hive.biochemistry.gwu.edu/tools/biomuta/biomuta.php

Biological Magnetic Resonance Data Bank
type: Database
abbreviation: BMRB
category: 3D structure databases
link is explicit: true
citation: http://purl.uniprot.org/citations/17984079
url template: https://bmrb.io/data_library/summary/protein.php

BRENDA Comprehensive Enzyme Information System
type: Database
abbreviation: BRENDA
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30395242
url template: https://www.brenda-enzymes.org/enzyme.php

CarbonylDB database of protein carbonylation sites
type: Database
abbreviation: CarbonylDB
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29509874
url template: http://digbio.missouri.edu/CarbonylDB/index.php/detail/protein/%u

Carbohydrate-Active enZymes
type: Database
abbreviation: CAZy
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24270786
url template: http://www.cazy.org/fam/%s.html

The Consensus CDS (CCDS) project
type: Database
abbreviation: CCDS
category: Sequence databases
link is explicit: true
citation: http://purl.uniprot.org/citations/19498102
url template: https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi

Conserved Domains Database
type: Database
abbreviation: CDD
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25414356
url template: https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi

Candida Genome Database
type: Database
abbreviation: CGD
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27738138
url template: http://www.candidagenome.org/cgi-bin/locus.pl

ChEMBL database of bioactive drug-like small molecules
type: Database
abbreviation: ChEMBL
category: Chemistry databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30398643
url template: https://www.ebi.ac.uk/chembl/target/inspect/%s

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data
type: Database
abbreviation: ChiTaRS
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31747015
url template: http://biosrv.org/chmb/search

CLAE, a database of fungal genes encoding lignocellulose-active proteins
type: Database
abbreviation: CLAE
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25754864
url template: https://clae.fungalgenomics.ca/enzyme/%s

The ClinGen clinical relevance of genes and variants resource
type: Database
abbreviation: ClinGen
category: Genetic variation databases
citation: http://purl.uniprot.org/citations/26014595
url template: https://search.clinicalgenome.org/kb/genes/%s

CollecTF database of bacterial transcription factor binding sites
type: Database
abbreviation: CollecTF
category: Gene expression databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24234444
url template: http://www.collectf.org/%s

ComplexPortal: manually curated resource of macromolecular complexes
type: Database
abbreviation: ComplexPortal
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25313161
url template: https://www.ebi.ac.uk/complexportal/complex/%s

2-DE database at Universidad Complutense de Madrid
type: Database
abbreviation: COMPLUYEAST-2DPAGE
category: 2D gel databases
link is explicit: true
citation: http://purl.uniprot.org/citations/12659738
url template: http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi

ConoServer: Cone snail toxin database
type: Database
abbreviation: ConoServer
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22058133
url template: https://www.conoserver.org/

CORUM comprehensive resource of mammalian protein complexes
type: Database
abbreviation: CORUM
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30357367
url template: http://mips.helmholtz-muenchen.de/corum/

The CPTAC Assay portal
type: Database
abbreviation: CPTAC
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24972168
url template: https://assays.cancer.gov/%s

The CPTC Antibody Portal
type: Database
abbreviation: CPTC
category: Protocols and materials databases
link is explicit: true
url template: https://antibodies.cancer.gov/uniprot/%u

Comparative Toxicogenomics Database
type: Database
abbreviation: CTD
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/33068428
url template: https://ctdbase.org/detail.go

Database of single nucleotide polymorphism
type: Database
abbreviation: dbSNP
category: Genetic variation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/17170002
url template: https://www.ncbi.nlm.nih.gov/snp/%s

DNA Data Bank of Japan; a nucleotide sequence database
type: Database
abbreviation: DDBJ
category: Sequence databases
citation: http://purl.uniprot.org/citations/17108353
url template: http://getentry.ddbj.nig.ac.jp/search/get_entry

DEPOD human dephosphorylation database
type: Database
abbreviation: DEPOD
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31836896
url template: http://depod.bioss.uni-freiburg.de/showp.php

http://purl.uniprot.org/citations/31836896
type: Citation
primary topic of: https://pubmed.ncbi.nlm.nih.gov/31836896
identifier: doi:doi: 10.1093/database/baz133

Dictyostelium discoideum online informatics resource
type: Database
abbreviation: dictyBase
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/23172289
comment: Replacement for DictyBase
url template: http://dictybase.org/db/cgi-bin/gene_page.pl

Database of interacting proteins
type: Database
abbreviation: DIP
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/14681454
url template: https://dip.doe-mbi.ucla.edu/dip/Browse.cgi

DisGeNET
type: Database
abbreviation: DisGeNET
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31680165
url template: https://disgenet.org/search

Database of protein disorder
type: Database
abbreviation: DisProt
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/15310560
url template: https://disprot.org/%s

Domain mapping of disease mutations (DMDM)
type: Database
abbreviation: DMDM
category: Genetic variation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/20685956
url template: https://bioinf.umbc.edu/dmdm/gene_prot_page.php

The DNASU plasmid repository
type: Database
abbreviation: DNASU
category: Protocols and materials databases
link is explicit: true
citation: http://purl.uniprot.org/citations/21360289
url template: https://dnasu.org/DNASU/AdvancedSearchOptions.do

DOSAC-COBS 2D-PAGE database
type: Database
abbreviation: DOSAC-COBS-2DPAGE
category: 2D gel databases
link is explicit: true
url template: http://www.dosac.unipa.it/cgi-bin/2d/2d.cgi

Drug and drug target database
type: Database
abbreviation: DrugBank
category: Chemistry databases
link is explicit: true
citation: http://purl.uniprot.org/citations/16381955
url template: https://www.drugbank.ca/drugs/%s

DrugCentral
type: Database
abbreviation: DrugCentral
category: Chemistry databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30371892
url template: https://drugcentral.org

EchoBASE - an integrated post-genomic database for E. coli
type: Database
abbreviation: EchoBASE
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/15608209
url template: https://www.york.ac.uk/res/thomas/Gene.cfm

evolutionary genealogy of genes: Non-supervised Orthologous Groups
type: Database
abbreviation: eggNOG
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/36399505
url template: http://eggnogdb.embl.de/

The Eukaryotic Linear Motif resource for Functional Sites in Proteins
type: Database
abbreviation: ELM
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31680160
url template: http://elm.eu.org/instances.html

EMBL nucleotide sequence database
type: Database
abbreviation: EMBL
category: Sequence databases
link is explicit: true
citation: http://purl.uniprot.org/citations/33175160
url template: https://www.ebi.ac.uk/ena/browser/view/%s

Ensembl eukaryotic genome annotation project
type: Database
abbreviation: Ensembl
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31691826
url template: https://www.ensembl.org/id/%s

Ensembl bacterial and archaeal genome annotation project
type: Database
abbreviation: EnsemblBacteria
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31598706
url template: https://www.ensemblgenomes.org/id/%s

Ensembl fungal genome annotation project
type: Database
abbreviation: EnsemblFungi
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31598706
url template: https://www.ensemblgenomes.org/id/%s

Ensembl metazoan genome annotation project
type: Database
abbreviation: EnsemblMetazoa
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31598706
url template: https://www.ensemblgenomes.org/id/%s

Ensembl plant genome annotation project
type: Database
abbreviation: EnsemblPlants
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31598706
url template: https://www.ensemblgenomes.org/id/%s

Ensembl protists genome annotation project
type: Database
abbreviation: EnsemblProtists
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31598706
url template: https://www.ensemblgenomes.org/id/%s

Enzyme nomenclature database
type: Database
abbreviation: ENZYME
category: Enzyme and pathway databases
citation: http://purl.uniprot.org/citations/10592255
url template: https://enzyme.expasy.org/EC/%s

Encyclopedia of Proteome Dynamics
type: Database
abbreviation: EPD
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/28981707
url template: https://www.peptracker.com/epd/analytics/

ESTHER database of the Alpha/Beta-hydrolase fold superfamily of proteins
type: Database
abbreviation: ESTHER
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/23193256
url template: https://bioweb.supagro.inra.fr/ESTHER/gene_locus

European Hepatitis C Virus Database
type: Database
abbreviation: euHCVdb
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/17142229
url template: https://euhcvdb.lyon.inserm.fr/euHCVdb/do/displayHCVEntry

Relative evolutionary importance of amino acids within a protein sequence
type: Database
abbreviation: EvolutionaryTrace
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22183528
url template: http://mammoth.bcm.tmc.edu/cgi-bin/report_maker_ls/uniprotTraceServerResults.pl

ExpressionAtlas, Differential and Baseline Expression
type: Database
abbreviation: ExpressionAtlas
category: Gene expression databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31665515
comment: Replacement for ArrayExpress
url template: https://www.ebi.ac.uk/gxa/query

Drosophila genome database
type: Database
abbreviation: FlyBase
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30364959
comment: Replacement for DMAP
url template: https://flybase.org/reports/%s.html

GenAtlas: human gene database
type: Database
abbreviation: GenAtlas
category: Organism-specific databases
citation: http://purl.uniprot.org/citations/9835018
url template: http://genatlas.medecine.univ-paris5.fr/fiche.php

GenBank nucleotide sequence database
type: Database
abbreviation: GenBank
category: Sequence databases
citation: http://purl.uniprot.org/citations/17170002
url template: https://www.ncbi.nlm.nih.gov/nuccore/%s

GenCC: The Gene Curation Coalition
type: Database
abbreviation: GenCC
category: Genetic variation databases
citation: http://purl.uniprot.org/citations/35507016
url template: https://search.thegencc.org/genes/%s

Gene3D Structural and Functional Annotation of Protein Families
type: Database
abbreviation: Gene3D
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29112716
url template: http://www.cathdb.info/superfamily/%s

GeneCards: human genes, protein and diseases
type: Database
abbreviation: GeneCards
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/12424129
url template: https://www.genecards.org/cgi-bin/carddisp.pl

Database of genes from NCBI RefSeq genomes
type: Database
abbreviation: GeneID
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/21115458
url template: https://www.ncbi.nlm.nih.gov/gene/%s

GeneReviews a resource of expert-authored, peer-reviewed disease descriptions.
type: Database
abbreviation: GeneReviews
category: Organism-specific databases
link is explicit: true
url template: https://www.ncbi.nlm.nih.gov/books/NBK1116/

Ensembl GeneTree
type: Database
abbreviation: GeneTree
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/26896847
url template: https://www.ensemblgenomes.org/id-genetree/%s

Genevisible search portal to normalized and curated expression data from Genevestigator
type: Database
abbreviation: Genevisible
category: Gene expression databases
link is explicit: true
citation: http://purl.uniprot.org/citations/16896229
url template: https://genevisible.com/tissues/%d/UniProt/%u

The Gene Wiki collection of pages on human genes and proteins
type: Database
abbreviation: GeneWiki
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/18613750
url template: https://en.wikipedia.org/wiki/%s

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens
type: Database
abbreviation: GenomeRNAi
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/23193271
url template: http://genomernai.org/genedetails/%s

GlyConnect protein glycosylation platform
type: Database
abbreviation: GlyConnect
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30574787
url template: https://glyconnect.expasy.org/browser/proteins/%s

GlyCosmos Portal integrating glycosciences with life sciences
type: Database
abbreviation: GlyCosmos
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/32572234
url template: https://glycosmos.org/glycoproteins/show/uniprot/%u

GlyGen: Computational and Informatics Resources for Glycoscience
type: Database
abbreviation: GlyGen
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31616925
url template: https://glygen.org/protein/%u#glycosylation

Gene Ontology
type: Database
abbreviation: GO
category: Ontologies
link is explicit: true
citation: http://purl.uniprot.org/citations/30395331
url template: https://www.ebi.ac.uk/QuickGO/term/%s

Information system for G protein-coupled receptors (GPCRs)
type: Database
abbreviation: GPCRDB
category: Protein family/group databases
citation: http://purl.uniprot.org/citations/11125133
url template: https://gpcrdb.org/protein/%u/

Gramene; a comparative resource for plants
type: Database
abbreviation: Gramene
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29165610
url template: https://ensembl.gramene.org/id/%s

IUPHAR/BPS Guide to PHARMACOLOGY
type: Database
abbreviation: GuidetoPHARMACOLOGY
category: Chemistry databases
link is explicit: true
citation: http://purl.uniprot.org/citations/34718737
url template: https://www.guidetopharmacology.org/GRAC/ObjectDisplayForward

HAMAP database of protein families
type: Database
abbreviation: HAMAP
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25348399
url template: https://hamap.expasy.org/signature/%s

Human Gene Nomenclature Database
type: Database
abbreviation: HGNC
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/33152070
comment: Replacement for Genew
url template: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/%s

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms
type: Database
abbreviation: HOGENOM
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/10720578
url template: http://hogenom.univ-lyon1.fr/query_sequence

Human Protein Atlas
type: Database
abbreviation: HPA
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25613900
url template: https://www.proteinatlas.org/%s

Human Unidentified Gene-Encoded large proteins database
type: Database
abbreviation: HUGE
category: Organism-specific databases
citation: http://purl.uniprot.org/citations/14681467
url template: http://www.kazusa.or.jp/huge/gfpage/%s

Intrinsically Disordered proteins with Extensive Annotations and Literature
type: Database
abbreviation: IDEAL
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24178034
url template: https://www.ideal-db.org/ideal.php

The international ImMunoGeneTics information system
type: Database
abbreviation: IMGT_GENE-DB
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25378316
url template: https://www.imgt.org/IMGT_GENE-DB/GENElect

InParanoid: Eukaryotic Ortholog Groups
type: Database
abbreviation: InParanoid
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/18055500
url template: https://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi

Protein interaction database and analysis system
type: Database
abbreviation: IntAct
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24234451
url template: https://www.ebi.ac.uk/intact/interactors/id:%s*

Integrated resource of protein families, domains and functional sites
type: Database
abbreviation: InterPro
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/36350672
url template: https://www.ebi.ac.uk/interpro/entry/%s

iPTMnet integrated resource for PTMs in systems biology context
type: Database
abbreviation: iPTMnet
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29145615
url template: http://research.bioinformatics.udel.edu/iptmnet/entry/%s

jPOST - Japan Proteome Standard Repository/Database
type: Database
abbreviation: jPOST
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27899654
url template: https://globe.jpostdb.org/protein

KEGG: Kyoto Encyclopedia of Genes and Genomes
type: Database
abbreviation: KEGG
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27899662
url template: https://www.genome.jp/dbget-bin/www_bget

Legionella pneumophila genome database
type: Database
abbreviation: LegioList
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/15698474
url template: http://genolist.pasteur.fr/LegioList/genome.cgi

Mycobacterium leprae genome database
type: Database
abbreviation: Leproma
category: Organism-specific databases
link is explicit: true
url template: https://mycobrowser.epfl.ch/genes/%s

Maize Genetics and Genomics Database
type: Database
abbreviation: MaizeGDB
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/17202174
comment: Replacement for MaizeDB
url template: https://www.maizegdb.org/data_center/gene_product

MalaCards human disease database
type: Database
abbreviation: MalaCards
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25199789
url template: https://www.malacards.org/search/eliteGene/%s

Matched Annotation from NCBI and EMBL-EBI (MANE) - Phase one
type: Database
abbreviation: MANE-Select
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/35388217
url template: https://www.ensembl.org/id/%s

MassIVE - Mass Spectrometry Interactive Virtual Environment
type: Database
abbreviation: MassIVE
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30172843
url template: https://massive.ucsd.edu/ProteoSAFe/protein_explorer.jsp

MaxQB - The MaxQuant DataBase
type: Database
abbreviation: MaxQB
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22301388
url template: http://maxqb.biochem.mpg.de/mxdb/protein/show/%u

MEROPS protease database
type: Database
abbreviation: MEROPS
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29145643
url template: https://www.ebi.ac.uk/merops/cgi-bin/pepsum

MetOSite database of methionine sulfoxide sites
type: Database
abbreviation: MetOSite
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31197322
url template: https://metosite.uma.es/scan/%u

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)
type: Database
abbreviation: MGI
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30407599
comment: Replacement for MGD
url template: http://www.informatics.jax.org/marker/%s

Online Mendelian Inheritance in Man (OMIM)
type: Database
abbreviation: MIM
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25428349
url template: https://www.omim.org/entry/%s

Molecular INTeraction database
type: Database
abbreviation: MINT
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22096227
url template: https://mint.bio.uniroma2.it/cgi-bin/protein.py

MobiDB: a database of protein disorder and mobility annotations
type: Database
abbreviation: MobiDB
category: Family and domain databases
citation: http://purl.uniprot.org/citations/29136219
url template: https://mobidb.bio.unipd.it/entries/%u

Database of comparative protein structure models
type: Database
abbreviation: ModBase
category: 3D structure databases
citation: http://purl.uniprot.org/citations/16381869
url template: https://salilab.org/modbase-cgi/model_search.cgi

MoonDB Database of extreme multifunctional and moonlighting proteins
type: Database
abbreviation: MoonDB
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30371819
url template: http://moondb.hb.univ-amu.fr/protein/%u

MoonProt database of moonlighting proteins
type: Database
abbreviation: MoonProt
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/10087914
url template: http://www.moonlightingproteins.org/proteins/

neXtProt; the human protein knowledge platform
type: Database
abbreviation: neXtProt
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27899619
url template: https://www.nextprot.org/entry/%s

NIAGADS Genomics Database
type: Database
abbreviation: NIAGADS
category: Organism-specific databases
link is explicit: true
url template: https://www.niagads.org/genomics/app/record/gene/%s

USC-OGP 2-DE database
type: Database
abbreviation: OGP
category: 2D gel databases
link is explicit: true
url template: http://usc_ogp_2ddatabase.cesga.es/cgi-bin/2d/2d.cgi

Identification of Orthologs from Complete Genome Data
type: Database
abbreviation: OMA
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/33174605
url template: https://omabrowser.org/oma/group/%u

Open Targets
type: Database
abbreviation: OpenTargets
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27899665
url template: https://platform.opentargets.org/target/%s/associations

Orphanet; a database dedicated to information on rare diseases and orphan drugs
type: Database
abbreviation: Orphanet
category: Organism-specific databases
link is explicit: true
url template: https://www.orpha.net/consor/cgi-bin/OC_Exp.php

Database of Orthologous Groups
type: Database
abbreviation: OrthoDB
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30395283
url template: https://www.orthodb.org/

The PANTHER Classification System
type: Database
abbreviation: PANTHER
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30407594
url template: http://www.pantherdb.org/panther/family.do

Pathway Commons web resource for biological pathway data
type: Database
abbreviation: PathwayCommons
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/21071392
url template: http://apps.pathwaycommons.org/search

Pathosystems Resource Integration Center (PATRIC)
type: Database
abbreviation: PATRIC
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31667520
url template: https://www.patricbrc.org/view/Feature/%s

PaxDb, a database of protein abundance averages across all three domains of life
type: Database
abbreviation: PaxDb
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22535208
url template: https://pax-db.org/#!protein/%s

The Protein Circular Dichroism Data Bank
type: Database
abbreviation: PCDDB
category: 3D structure databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27613420
url template: https://pcddb.cryst.bbk.ac.uk/uniprot/%u

Protein Data Bank Europe
type: Database
abbreviation: PDB
category: 3D structure databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31691821
url template: https://www.ebi.ac.uk/pdbe-srv/view/entry/%s

Protein Data Bank in Europe - Knowledge Base
type: Database
abbreviation: PDBe-KB
category: 3D structure databases
citation: http://purl.uniprot.org/citations/31584092
url template: https://pdbe-kb.org/proteins/%u

Protein Data Bank Japan
type: Database
abbreviation: PDBj
category: 3D structure databases
citation: http://purl.uniprot.org/citations/21976737
url template: https://pdbj.org/mine/summary/%s

PDBsum; at-a-glance overview of macromolecular structures
type: Database
abbreviation: PDBsum
category: 3D structure databases
link is explicit: true
citation: http://purl.uniprot.org/citations/28875543
url template: https://www.ebi.ac.uk/pdbsum/%s

PeptideAtlas
type: Database
abbreviation: PeptideAtlas
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/16381952
url template: https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search

PeroxiBase, a peroxidase database
type: Database
abbreviation: PeroxiBase
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/23180785
url template: http://peroxibase.toulouse.inra.fr/display_perox/view_perox/%s

Pfam protein domain database
type: Database
abbreviation: Pfam
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/33125078
url template: https://www.ebi.ac.uk/interpro/entry/pfam/%s

The Pharmacogenetics and Pharmacogenomics Knowledge Base
type: Database
abbreviation: PharmGKB
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/16100408
url template: https://www.pharmgkb.org/gene/%s

Pharos NIH Druggable Genome Knowledgebase
type: Database
abbreviation: Pharos
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27903890
url template: https://pharos.nih.gov/targets/%u

Pathogen-Host Interaction database
type: Database
abbreviation: PHI-base
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24972168
url template: http://www.phi-base.org/searchFacet.htm

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.
type: Database
abbreviation: PhosphoSitePlus
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25514926
comment: Replacement for Phosphosite.
url template: https://www.phosphosite.org/uniprotAccAction

Database for complete collections of gene phylogenies
type: Database
abbreviation: PhylomeDB
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24275491
url template: http://phylomedb.org/search_phylome/

Protein sequence database of the Protein Information Resource
type: Database
abbreviation: PIR
category: Sequence databases
link is explicit: true
comment: No longer maintained (data was integrated into UniProtKB).
url template: https://proteininformationresource.org/cgi-bin/nbrfget

PIRSF; a whole-protein classification database
type: Database
abbreviation: PIRSF
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/14681371
url template: https://proteininformationresource.org/cgi-bin/ipcSF

Reactome - a knowledgebase of biological pathways and processes for plant species
type: Database
abbreviation: PlantReactome
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27799469
url template: https://plantreactome.gramene.org/PathwayBrowser/

Schizosaccharomyces pombe database
type: Database
abbreviation: PomBase
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30321395
comment: Replacement for GeneDB_Spombe
url template: https://www.pombase.org/gene/%s

PRoteomics IDEntifications database
type: Database
abbreviation: PRIDE
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30395289
url template: https://www.ebi.ac.uk/pride/searchSummary.do

Protein Motif fingerprint database; a protein domain database
type: Database
abbreviation: PRINTS
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22508994
comment: Replacement for PRINT
url template: http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi

Protein Ontology
type: Database
abbreviation: PRO
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24270789
url template: https://proconsortium.org/app/entry/%s

Protein Mass spectra EXtraction
type: Database
abbreviation: ProMEX
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22685450
url template: http://promex.pph.univie.ac.at/promex/

PROSITE; a protein domain and family database
type: Database
abbreviation: PROSITE
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/23161676
url template: https://prosite.expasy.org/doc/%s

Proteomes
type: Database
abbreviation: Proteomes
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22102590
url template: https://www.uniprot.org/proteomes/%s

ProteomicsDB: a multi-organism proteome resource
type: Database
abbreviation: ProteomicsDB
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31665479
url template: https://www.proteomicsdb.org/proteomicsdb/#protein/proteinDetails/%s

Pseudomonas genome database
type: Database
abbreviation: PseudoCAP
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/15608211
url template: https://www.pseudomonas.com/feature/show

Protein Data Bank RCSB
type: Database
abbreviation: RCSB-PDB
category: 3D structure databases
citation: http://purl.uniprot.org/citations/16381872
url template: https://www.rcsb.org/structure/%s

Reactome - a knowledgebase of biological pathways and processes
type: Database
abbreviation: Reactome
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31691815
comment: Replacement for GK
url template: https://www.reactome.org/PathwayBrowser/

Restriction enzymes and methylases database
type: Database
abbreviation: REBASE
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25378308
url template: http://rebase.neb.com/rebase/enz/%s.html

NCBI Reference Sequences
type: Database
abbreviation: RefSeq
category: Sequence databases
link is explicit: true
citation: http://purl.uniprot.org/citations/26553804
url template: https://www.ncbi.nlm.nih.gov/protein/%s

REPRODUCTION-2DPAGE
type: Database
abbreviation: REPRODUCTION-2DPAGE
category: 2D gel databases
link is explicit: true
url template: http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi

Rat Genome Database
type: Database
abbreviation: RGD
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31713623
url template: https://rgd.mcw.edu/rgdweb/report/gene/main.html

RNAct, Protein-RNA interaction predictions for model organisms.
type: Database
abbreviation: RNAct
category: Miscellaneous databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30445601
url template: https://rnact.crg.eu/%d

Rodent Unidentified Gene-Encoded large proteins database
type: Database
abbreviation: Rouge
category: Organism-specific databases
citation: http://purl.uniprot.org/citations/14681467
url template: http://www.kazusa.or.jp/rouge/gfpage/%s

SABIO-RK: Biochemical Reaction Kinetics Database
type: Database
abbreviation: SABIO-RK
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22102587
url template: https://sabiork.h-its.org/newSearch

Small Angle Scattering Biological Data Bank
type: Database
abbreviation: SASBDB
category: 3D structure databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31576635
url template: https://www.sasbdb.org/uniprot/%u/

Structure-Function Linkage Database
type: Database
abbreviation: SFLD
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24271399
url template: https://www.ebi.ac.uk/interpro/entry/sfld/%s

Saccharomyces Genome Database
type: Database
abbreviation: SGD
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22110037
url template: https://www.yeastgenome.org/locus/%s

SignaLink: a signaling pathway resource with multi-layered regulatory networks
type: Database
abbreviation: SignaLink
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/20542890
url template: http://signalink.org/protein/%u

SIGNOR Signaling Network Open Resource
type: Database
abbreviation: SIGNOR
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/26467481
url template: https://signor.uniroma2.it/relation_result.php

Simple Modular Architecture Research Tool; a protein domain database
type: Database
abbreviation: SMART
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29040681
url template: http://smart.embl.de/smart/do_annotation.pl

SWISS-MODEL Repository - a database of annotated 3D protein structure models
type: Database
abbreviation: SMR
category: 3D structure databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27899672
url template: https://swissmodel.expasy.org/repository/uniprot/%s

The Stanford Online Universal Resource for Clones and ESTs
type: Database
abbreviation: SOURCE
category: Miscellaneous databases
url template: https://puma.princeton.edu/cgi-bin/source/sourceResult

STRING: functional protein association networks
type: Database
abbreviation: STRING
category: Protein-protein interaction databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30476243
url template: https://string-db.org/network/%s

Superfamily database of structural and functional annotation
type: Database
abbreviation: SUPFAM
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/11697912
url template: https://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi

Two-dimensional polyacrylamide gel electrophoresis database from the Geneva University Hospital
type: Database
abbreviation: SWISS-2DPAGE
category: 2D gel databases
link is explicit: true
citation: http://purl.uniprot.org/citations/15274128
url template: https://world-2dpage.expasy.org/swiss-2dpage/%u

SWISS-MODEL Interactive Workspace
type: Database
abbreviation: SWISS-MODEL-Workspace
category: 3D structure databases
citation: http://purl.uniprot.org/citations/29788355
url template: https://swissmodel.expasy.org/interactive/

SwissLipids knowledge resource for lipid biology
type: Database
abbreviation: SwissLipids
category: Chemistry databases
link is explicit: true
citation: http://purl.uniprot.org/citations/25943471
url template: https://www.swisslipids.org/#/entity/%s/

SwissPalm database of S-palmitoylation events
type: Database
abbreviation: SwissPalm
category: PTM databases
link is explicit: true
citation: http://purl.uniprot.org/citations/26339475
url template: https://swisspalm.org/proteins/%u

The Arabidopsis Information Resource
type: Database
abbreviation: TAIR
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22140109
url template: https://www.arabidopsis.org/servlets/TairObject

Transport Classification Database
type: Database
abbreviation: TCDB
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/19022853
url template: http://www.tcdb.org/search/result.php

TIGRFAMs; a protein family database
type: Database
abbreviation: TIGRFAMs
category: Family and domain databases
link is explicit: true
citation: http://purl.uniprot.org/citations/23197656
url template: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/evidence/%s/

Consortium for Top Down Proteomics
type: Database
abbreviation: TopDownProteomics
category: Proteomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24644084
url template: http://repository.topdownproteomics.org/Proteoforms

TreeFam database of animal gene trees
type: Database
abbreviation: TreeFam
category: Phylogenomic databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24194607
url template: http://www.treefam.org/family/%s

Mycobacterium tuberculosis strain H37Rv genome database
type: Database
abbreviation: TubercuList
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/20980200
url template: https://mycobrowser.epfl.ch/genes/%s

University College Dublin 2-DE Proteome Database
type: Database
abbreviation: UCD-2DPAGE
category: 2D gel databases
link is explicit: true
comment: Replacement for HSC-2DPAGE
url template: https://proteomics-portal.ucd.ie/cgi-bin/2d/2d.cgi

UCSC genome browser
type: Database
abbreviation: UCSC
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30407534
url template: https://genome.ucsc.edu/cgi-bin/hgLinkIn

UniLectin database of carbohydrate-binding proteins
type: Database
abbreviation: UniLectin
category: Protein family/group databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30239928
url template: https://www.unilectin.eu/curated/protein/%u

UniPathway: a resource for the exploration and annotation of metabolic pathways
type: Database
abbreviation: UniPathway
category: Enzyme and pathway databases
link is explicit: true
citation: http://purl.uniprot.org/citations/22102589
url template: http://www.unipathway.org

Eukaryotic Pathogen, Vector and Host Database Resources
type: Database
abbreviation: VEuPathDB
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/27903906
url template: https://www.veupathdb.org/gene/%s

Vertebrate Gene Nomenclature Database
type: Database
abbreviation: VGNC
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/33152070
url template: https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/%s

WormBase ParaSite
type: Database
abbreviation: WBParaSite
category: Genome annotation databases
link is explicit: true
citation: http://purl.uniprot.org/citations/24194605
url template: https://parasite.wormbase.org/id/%s

The World-2DPAGE database
type: Database
abbreviation: World-2DPAGE
category: 2D gel databases
link is explicit: true
citation: http://purl.uniprot.org/citations/18617148
url template: https://world-2dpage.expasy.org/repository/%s

WormBase
type: Database
abbreviation: WormBase
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/31642470
url template: https://wormbase.org/db/seq/protein

Xenopus laevis and tropicalis biology and genomics resource
type: Database
abbreviation: Xenbase
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/29059324
url template: https://www.xenbase.org/gene/showgene.do

Zebrafish Information Network genome database
type: Database
abbreviation: ZFIN
category: Organism-specific databases
link is explicit: true
citation: http://purl.uniprot.org/citations/30407545
url template: https://zfin.org/%s