Isolation and Characterization of Artificially Polluted Soil Metagenome Clones That Confer Indigo-Forming Activity on Naphthalene Dioxygenase Mutants of Naphthalene-Degrading Bacterial strains.
Fumarylacetoacetase-like, C-terminal domain
2-hydroxypent-2,4-dienoate hydratase, DmpE
P-loop containing nucleotide triphosphate hydrolases
Trafficking protein particle complex subunit 3
SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED
Ligand-binding domain in the NO signalling and Golgi transport
P-loop containing nucleoside triphosphate hydrolases
NtrC family transcriptional activator, DmpR
DNA-directed RNA polymerase, beta subunit, external 1 domain
DNA-directed RNA polymerase, subunit 2, domain 6
DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA
beta and beta-prime subunits of DNA dependent RNA-polymerase
Belongs to the RNA polymerase beta chain family.
DNA-directed RNA polymerase beta subunit external 1
DNA-directed RNA polymerase subunit 2 hybrid-binding
Histidine kinase-like ATPase, C-terminal domain
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Belongs to the type II topoisomerase GyrB family.
Medium-chain alcohol dehydrogenases, catalytic domain
Zinc-type alcohol dehydrogenase-like protein
Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
Belongs to the glycosyl hydrolase 13 family.
AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
Cloning, heterologous expression, renaturation, and characterization of a cold-active esterase with unique primary structure from a psychrotroph Pseudomonas sp. Strain B11-1.
GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700)
Present-day mercury resistance transposons are common in bacteria preserved in permafrost grounds since the Upper Pleistocene.
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0).
Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
D-Amino Acid Oxidase, subunit A, domain 2
PUTATIVE (AFU_ORTHOLOGUE AFUA_6G14510)-RELATED
2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR
Mercuric resistance operon regulatory protein
Mediates the mercuric-dependent induction of mercury resistance operon. In the absence of mercury MerR represses transcription by binding tightly to the mer operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site.
Involved in mercury resistance. Acts as a mercury scavenger that specifically binds to a mercuric ion in the periplasm and probably passes it to the cytoplasmic mercuric reductase MerA via the mercuric transport protein MerT.
Ribonuclease H-like superfamily/Ribonuclease H
Cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. One product is Hg(2+), which is subsequently detoxified by the mercuric reductase.
Belongs to the site-specific recombinase resolvase family.
Resolvase/invertase-type recombinase catalytic
Conjugal-Transfer Related Sequences from the Streptomycin-Resistance Plasmid pCPP519.
Primase C-terminal 1 domain-containing protein
Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily.
FAD-dependent oxidoreductase 2 FAD binding
Fumarate reductase/succinate dehydrogenase flavoprotein-like C-terminal
X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 28-198 AND 199-720
X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 31-719 IN COMPLEX WITH CALCIUM
X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 31-719
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
the tripartite atp-independent periplasmic transporter (trap-t) family
C4-DICARBOXYLATE TRAP TRANSPORTER LARGE PERMEASE PROTEIN DCTM
SIALIC ACID TRAP TRANSPORTER PERMEASE PROTEIN SIAT-RELATED
Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
The complex comprises the extracytoplasmic solute receptor protein and the two transmembrane proteins.
Belongs to the TRAP transporter large permease family.
Lacks conserved residue(s) required for the propagation of feature annotation.
TRAP C4-dicarboxylate transport system permease DctM subunit
Bacterial extracellular solute-binding protein, family 7
Sequence analysis of the hpaD and hpaF genes encoding homoprotocatechuate 2,3-dioxygenase and 5-carboxymethyl-2-hydroxymuconate isomerase from Pseudomonas sp. DJ-12.
4-HYDROXYPHENYLACETATE CATABOLISM PROTEIN
Extradiol ring-cleavage dioxygenase class III enzyme subunit B
4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER
NOVEL THIOESTERASE SUPERFAMILY DOMAIN AND SAPOSIN A-TYPE DOMAIN CONTAINING PROTEIN (0610012H03RIK)
Thioesterase/thiol ester dehydrase-isomerase
Belongs to the 4-hydroxybenzoyl-CoA thioesterase family.
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_1G01890)
Belongs to the enoyl-CoA hydratase/isomerase family.
5-carboxymethyl-2-hydroxymuconic acid isomerase
2,3-DIKETO-L-GULONATE TRAP TRANSPORTER SMALL PERMEASE PROTEIN YIAM
Belongs to the TRAP transporter small permease family.
The nucleotide sequence upstream and downstream of 4-CBA-CoA ORFs in 9.5 kb Pseudomonas sp. strain CBS 3 chromosomal DNA.
FAD-linked reductases, C-terminal domain
Substrate binding region of ABC-type glycine betaine transport system
ABC-type glycine betaine transport system substrate-binding
Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
GLYCINE CLEAVAGE SYSTEM TRANSCRIPTIONAL ACTIVATOR
Belongs to the LysR transcriptional regulatory family.
Leucine Dehydrogenase, chain A, domain 1
BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC
Aminoacid dehydrogenase-like, N-terminal domain
Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
Belongs to the shikimate dehydrogenase family.
Shikimate dehydrogenase substrate binding N-terminal
Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.
Belongs to the 4-oxalocrotonate tautomerase family.
2-ISOPROPYLMALATE SYNTHASE 1, CHLOROPLASTIC-RELATED
4-hydroxy-2-keto-pentanoic acid aldolase
Belongs to the 4-hydroxy-2-oxovalerate aldolase family.
2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE
2-hydroxymuconic semialdehyde dehydrogenase, DmpC
Belongs to the aldehyde dehydrogenase family.
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Acetaldehyde dehydrogenase [acetylating]
Belongs to the acetaldehyde dehydrogenase family.
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Belongs to the extradiol ring-cleavage dioxygenase family.
2-hydroxymuconate semialdehyde hydrolase, DmpD
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
Ferredoxin reductase-like, C-terminal NADP-linked domain
FAD-containing reductase component, DmpP
Monooxygenase (hydroxylase) regulatory protein
Phenol hydoxylase activator protein, DmpM
Putative diterpenoid dioxygenase alpha subunit
Aromatic-ring-hydroxylating dioxygenase alpha subunit C-terminal
Auxillary protein, DmpK, associated wit multicomponent phenol hydroxylase
The 3-hexulose-6-phosphate synthase-encoding gene of the obligate methylotroph Aminomonas aminovorus C2A1 is not present on a gene cluster encoding other enzymes of the ribulose monophosphate pathway.
3-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE SGBH-RELATED
Belongs to the HPS/KGPDC family. HPS subfamily.
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
Serralysin-like metalloprotease, C-terminal
Belongs to the glycosyl hydrolase 9 (cellulase E) family.
TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED
Involved in the transposition of the insertion sequence IS5.
Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) IN COMPLEX WITH FAD AND NAD(+)
A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin.
X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) IN COMPLEX WITH FAD
X-RAY CRYSTALLOGRAPHY (1.85 ANGSTROMS) IN COMPLEX WITH FAD
X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH FAD
X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS) IN COMPLEX WITH ADP; FAD AND NAD
RIESKE DOMAIN-CONTAINING PROTEIN-RELATED