OBO-Edit 2.1.1-beta7 04:07:2013 20:24 anatomical_entity_ontology 1.2 jonathanbard anatomical_entity_ontology this version corrects the namespace and includes some flybase alt_IDs definition has_alternative_id database_cross_reference has_obo_format_version has_obo_namespace has_related_synonym anatomical_entity_ontology derives_from derives_from anatomical_entity_ontology descends descends anatomical_entity_ontology develops_from develops_from anatomical_entity_ontology endStage endStage anatomical_entity_ontology hasMapping hasMapping anatomical_entity_ontology isReferenceForMapping isReferenceForMapping anatomical_entity_ontology part_of part_of anatomical_entity_ontology startStage startStage anatomical_entity_ontology subEventOf subEventOf anatomical_entity_ontology type type Anatomical structure composed of a single cell. EHDAA2:0003013 http://www.xspan.org/obo.owl# AEO:0000013 single-cell tissue AEO:0000013 Anatomical structure composed of a single cell. CARO:MAH The inner space within a tube. EHDAA2:0003078 UBERON:0005082 http://www.xspan.org/obo.owl# tube lumen AEO:0000078 lumen of tube AEO:0000078 The inner space within a tube. AEO:JB A small cavity bounded by an epithelium. EHDAA2:0003079 http://www.xspan.org/obo.owl# cavity of vesicle AEO:0000079 lumen of epithelial sac AEO:0000079 A small cavity bounded by an epithelium. AEO:JB A hole in a tissue. EHDAA2:0003080 http://www.xspan.org/obo.owl# AEO:0000080 foramen AEO:0000080 A hole in a tissue. AEO:JB A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified. EHDAA2:0003081 http://www.xspan.org/obo.owl# AEO:0000081 matrix-based tissue AEO:0000081 A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified. AEO:JB Ossified structure that is predominantly extracellular matrix and forms part of the support system of the body. EHDAA2:0003082 http://www.xspan.org/obo.owl# AEO:0000082 bone AEO:0000082 Ossified structure that is predominantly extracellular matrix and forms part of the support system of the body. AEO:JB Bone that is preformed in cartilage. EHDAA2:0003083 http://www.xspan.org/obo.owl# AEO:0000083 endochondral bone AEO:0000083 Bone that is preformed in cartilage. AEO:JB VAO:0000145 Bone that forms directly from mesenchyme. EHDAA2:0003085 http://www.xspan.org/obo.owl# AEO:0000085 membrane bone AEO:0000085 Bone that forms directly from mesenchyme. AEO:JB VAO:0000023 An endochondral bone that forms within tendenous or ligamentous matrix. EHDAA2:0003086 http://www.xspan.org/obo.owl# AEO:0000086 sesamoid bone AEO:0000086 An endochondral bone that forms within tendenous or ligamentous matrix. AEO:JB VAO:0000137 Dense connective tissue made primarily of type II collagen. EHDAA2:0003087 http://www.xspan.org/obo.owl# AEO:0000087 cartilage AEO:0000087 Dense connective tissue made primarily of type II collagen. AEO:JB VAO:0000040 A strap of predominantly extracellular matrix connecting two bones. EHDAA2:0003090 http://www.xspan.org/obo.owl# AEO:0000090 ligament AEO:0000090 A strap of predominantly extracellular matrix connecting two bones. AEO:JB A strap of predominantly extracellular matrix connecting a muscle to a bone. EHDAA2:0003091 http://www.xspan.org/obo.owl# AEO:0000091 tendon AEO:0000091 A strap of predominantly extracellular matrix connecting a muscle to a bone. AEO:JB A sheet of extracellular matrix. EHDAA2:0003092 http://www.xspan.org/obo.owl# AEO:0000092 aponeurosis AEO:0000092 A sheet of extracellular matrix. AEO:JB An anatomical group whose component structures share a common function. EHDAA2:0003093 FBbt:00007278 http://www.xspan.org/obo.owl# AEO:0000093 non-connected functional system AEO:0000093 An anatomical group whose component structures share a common function. AEO:JB Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system. EHDAA2:0003094f FBbt:00005155 http://www.xspan.org/obo.owl# AEO:0000094 sense organ AEO:0000094 Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system. AEO:JB Fluid anatomical entity containing cells. EHDAA2:0003095 http://www.xspan.org/obo.owl# AEO:0000095 fluid-based anatomical entity AEO:0000095 Fluid anatomical entity containing cells. AEO:JB A multi-tissue structure that produces a secretion for use elsewhere in the body. EHDAA2:0003096 http://www.xspan.org/obo.owl# AEO:0000096 gland AEO:0000096 A multi-tissue structure that produces a secretion for use elsewhere in the body. AEO:JB A gland that releases its secretion through a duct. EHDAA2:0003097 http://www.xspan.org/obo.owl# exocrine gland. AEO:0000097 ducted gland AEO:0000097 A gland that releases its secretion through a duct. AEO:JB A gland that releases its secretion directly into the bloodstream, or equivalent for an invertebrate. EHDAA2:0003098 http://www.xspan.org/obo.owl# endocrine gland. AEO:0000098 ductless gland AEO:0000098 A gland that releases its secretion directly into the bloodstream, or equivalent for an invertebrate. AEO:JB endocrine gland. AEO:JB Acellular anatomical structure whose predominant constituent is keratin. EHDAA2:0003099 http://www.xspan.org/obo.owl# AEO:0000099 keratin-based structure AEO:0000099 Acellular anatomical structure whose predominant constituent is keratin. AEO:JB Acellular anatomical structure whose predominant constituent is chitin. EHDAA2:0003100 http://www.xspan.org/obo.owl# AEO:0000100 chitin-based structure AEO:0000100 Acellular anatomical structure whose predominant constituent is chitin. AEO:JB The region of the organism associated with the visceral organs. EHDAA2:0003103 http://www.xspan.org/obo.owl# AEO:0000103 body AEO:0000103 The region of the organism associated with the visceral organs. AEO:JB The region of the body containing the brain and mouth. EHDAA2:0003106 http://www.xspan.org/obo.owl# AEO:0000106 head AEO:0000106 The region of the body containing the brain and mouth. AEO:JB The region of the body connecting the head and the body. EHDAA2:0003108 http://www.xspan.org/obo.owl# AEO:0000108 neck AEO:0000108 The region of the body connecting the head and the body. AEO:JB An external caudal extension of the body. EHDAA2:0003109 http://www.xspan.org/obo.owl# AEO:0000109 tail AEO:0000109 An external caudal extension of the body. AEO:JB Epithelium derived from mesenchyme. EHDAA2:0003111 http://www.xspan.org/obo.owl# AEO:0000111 mesothelium AEO:0000111 Epithelium derived from mesenchyme. AEO:JB An epithelial structure capable of allowing fluid flow. EHDAA2:0003114 http://www.xspan.org/obo.owl# AEO:0000114 epithelial tube AEO:0000114 An epithelial structure capable of allowing fluid flow. AEO:JB An epithelial pouch with a single opening. EHDAA2:0003115 http://www.xspan.org/obo.owl# AEO:0000115 epithelial sac AEO:0000115 An epithelial pouch with a single opening. AEO:JB A group of connected epithelial tubes with a single portal. EHDAA2:0003117 http://www.xspan.org/obo.owl# AEO:0000117 arborising epithelial duct system AEO:0000117 A group of connected epithelial tubes with a single portal. AEO:JB A network of interlinking epithelial tubes. EHDAA2:0003118 http://www.xspan.org/obo.owl# AEO:0000118 epithelial plexus AEO:0000118 A network of interlinking epithelial tubes. AEO:JB A closed epithelium with a lumen. EHDAA2:0003119 http://www.xspan.org/obo.owl# AEO:0000119f epithelial vesicle AEO:0000119f A closed epithelium with a lumen. AEO:JB A tissue composed of myoblasts or muscle cells. EHDAA2:0003122 http://www.xspan.org/obo.owl# AEO:0000122 muscle tissue AEO:0000122 A tissue composed of myoblasts or muscle cells. AEO:JB Tissue composed predominantly of neurons. EHDAA2:0003123 http://www.xspan.org/obo.owl# AEO:0000123 neural tissue AEO:0000123 Tissue composed predominantly of neurons. AEO:JB A structure whose morphology or state of differentiation will change during normal development. EHDAA2:0003125 UBERON:0005423 http://www.xspan.org/obo.owl# AEO:0000125 developing anatomical structure AEO:0000125 A structure whose morphology or state of differentiation will change during normal development. AEO:JB A post-embryonic juvenile form which will undergo metamorphosis to become the adult. EHDAA2:0003126 http://www.xspan.org/obo.owl# AEO:0000126 larva AEO:0000126 A post-embryonic juvenile form which will undergo metamorphosis to become the adult. AEO:JB An embryonic anatomical structure undergoing apoptosis. EHDAA2:0003127 http://www.xspan.org/obo.owl# AEO:0000127 apoptosing developing anatomical entity AEO:0000127 An embryonic anatomical structure undergoing apoptosis. AEO:JB An embryonic entity that displays a physiological function but whose strucuture is not yet fully formed. EHDAA2:0003129 http://www.xspan.org/obo.owl# AEO:0000129 functioning and developing structure AEO:0000129 An embryonic entity that displays a physiological function but whose strucuture is not yet fully formed. AEO:JB Embronic structure that contains stem cellsr that may contribute to its future development or maintenance or to its future development or maintenance of another tissue. EHDAA2:0003131 http://www.xspan.org/obo.owl# AEO:0000131 developing structure with stem cells AEO:0000131 Embronic structure that contains stem cellsr that may contribute to its future development or maintenance or to its future development or maintenance of another tissue. AEO:JB An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development. EHDAA2:0003132 http://www.xspan.org/obo.owl# AEO:0000132 transitional anatomical structure AEO:0000132 An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development. AEO:JB A group of neurons, usually outside the CNS, which relay neuronal signals. EHDAA2:0003135 http://www.xspan.org/obo.owl# AEO:0000135 ganglion AEO:0000135 A group of neurons, usually outside the CNS, which relay neuronal signals. AEO:JB A localised domain of predominantly neuronal tissue in the central nervous system. EHDAA2:0003136 http://www.xspan.org/obo.owl# AEO:0000136 neuronal nucleus AEO:0000136 A localised domain of predominantly neuronal tissue in the central nervous system. AEO:JB A group of neurons that provides a nervous supply. EHDAA2:0003137 http://www.xspan.org/obo.owl# AEO:0000137 nerve AEO:0000137 A group of neurons that provides a nervous supply. AEO:JB A complex of interconnecting nerves. EHDAA2:0003138 http://www.xspan.org/obo.owl# AEO:0000138 nerve plexus AEO:0000138 A complex of interconnecting nerves. AEO:JB A fasciculated bundle of neuron projections, largely or completely lacking synapses. EHDAA2:0003139 http://www.xspan.org/obo.owl# neuron projection bundle AEO:0000139 nerve fiber tract AEO:0000139 A fasciculated bundle of neuron projections, largely or completely lacking synapses. CARO:0001001 GO:0043005 neuron projection bundle GO:0043005 A tissue composed of striated muscle cells. EHDAA2:0003140 http://www.xspan.org/obo.owl# AEO:0000140 striated muscle tissue AEO:0000140 A tissue composed of striated muscle cells. AEO:JB A tissue composed of smooth muscle cells. EHDAA2:0003141 http://www.xspan.org/obo.owl# AEO:0000141 smooth muscle tissue AEO:0000141 A tissue composed of smooth muscle cells. AEO:JB A tissue composed of cardiac muscle cells. EHDAA2:0003142 http://www.xspan.org/obo.owl# AEO:0000142 cardiac muscle tissue AEO:0000142 A tissue composed of cardiac muscle cells. AEO:JB A ring of smooth muscle cells whose contraction closes the opening of the ring. EHDAA2:0003143 http://www.xspan.org/obo.owl# AEO:0000143 smooth muscle sphincter AEO:0000143 A ring of smooth muscle cells whose contraction closes the opening of the ring. AEO:JB A ring of striated muscle cells whose contraction closes the opening of the ring. EHDAA2:0003144 http://www.xspan.org/obo.owl# AEO:0000144 striated muscle sphincter AEO:0000144 A ring of striated muscle cells whose contraction closes the opening of the ring. AEO:JB A group of not-yet-terminally-differentiatied cells that can pack in three dimensions. EHDAA2:0003145 http://www.xspan.org/obo.owl# AEO:0000145 mesenchymal tissue AEO:0000145 A group of not-yet-terminally-differentiatied cells that can pack in three dimensions. AEO:JB Mesenchyme with little extracellular matrix. EHDAA2:0003146 http://www.xspan.org/obo.owl# AEO:0000146 dense mesenchyme tissue AEO:0000146 Mesenchyme with little extracellular matrix. AEO:JB Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes. EHDAA2:0003147 http://www.xspan.org/obo.owl# AEO:0000147 cartilagenous condensation AEO:0000147 Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes. AEO:JB GO:curator VAO:0000092 A delimited region of dense mesenchyme within looser mesenchyme. EHDAA2:0003148 http://www.xspan.org/obo.owl# AEO:0000148 developing mesenchymal condensation AEO:0000148 A delimited region of dense mesenchyme within looser mesenchyme. AEO:JB A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become myoblasts. EHDAA2:0003149 http://www.xspan.org/obo.owl# AEO:0000149 pre-muscle condensation AEO:0000149 A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become myoblasts. AEO:JB A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts. EHDAA2:0003150 http://www.xspan.org/obo.owl# AEO:0000150 pre-cartilage condensation AEO:0000150 A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts. AEO:JB Mesenchyme whose cells are embedded in obvious amounts fo extracellular matrix. EHDAA2:0003151 http://www.xspan.org/obo.owl# AEO:0000151 loose mesenchyme tissue AEO:0000151 Mesenchyme whose cells are embedded in obvious amounts fo extracellular matrix. AEO:JB Mesenchymal cells that are migrating. EHDAA2:0003152 http://www.xspan.org/obo.owl# AEO:0000152 migrating mesenchyme population AEO:0000152 Mesenchymal cells that are migrating. AEO:JB Multi-tissue mesenchymal structure one of whose parts contains stem cells that can replace other parts. EHDAA2:0003153 http://www.xspan.org/obo.owl# AEO:0000153 mesenchymal tissue with stem cells AEO:0000153 Multi-tissue mesenchymal structure one of whose parts contains stem cells that can replace other parts. AEO:JB The collection of structures that form the exxtenal covering of the organism. EHDAA2:0003154 http://www.xspan.org/obo.owl# AEO:0000154 organism surfacef AEO:0000154 The collection of structures that form the exxtenal covering of the organism. AEO:JB A furrow or an incomplete tube. EHDAA2:0003161 UBERON:0006846 ZFA:0001690 http://www.xspan.org/obo.owl# AEO:0000161 groove AEO:0000161 A furrow or an incomplete tube. AEO:JB A raised strip of tissue. EHDAA2:0003162 http://www.xspan.org/obo.owl# AEO:0000162 ridge AEO:0000162 A raised strip of tissue. AEO:JB The rigid support system for the body. EHDAA2:0003168 http://www.xspan.org/obo.owl# AEO:0000168 skeletal system AEO:0000168 The rigid support system for the body. AEO:JB VAO:0000027 That part of the conceptus that will form the organism. EHDAA2:0003169 UBERON:0000922 ZFA:0001105 http://www.xspan.org/obo.owl# AEO:0000169 embryo AEO:0000169 That part of the conceptus that will form the organism. AEO:JB Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue. EHDAA2:0003170 http://www.xspan.org/obo.owl# AEO:0000170 anlage AEO:0000170 Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue. AEO:JB Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue. EHDAA2:0003171 http://www.xspan.org/obo.owl# AEO:0000171 primordium AEO:0000171 Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue. AEO:JB Appendage of an animal used for locomotion or grasping. EHDAA2:0003172 http://www.xspan.org/obo.owl# AEO:0000172 limb AEO:0000172 Appendage of an animal used for locomotion or grasping. AEO:JB Multicellular anatomical structure with largely bona fide boundary that extends outwards from or is part of the organism surface and transduces some sensory stimulus to the nervous system. EHDAA2:0003173 http://www.xspan.org/obo.owl# AEO:0000173 surface sense organ AEO:0000173 Multicellular anatomical structure with largely bona fide boundary that extends outwards from or is part of the organism surface and transduces some sensory stimulus to the nervous system. AEO:JB A part of the body present only in a specific gender. EHDAA2:0003174 http://www.xspan.org/obo.owl# AEO:0000174 gender-specific anatomical structure AEO:0000174 A part of the body present only in a specific gender. AEO:JB A part of the body present only in males. EHDAA2:0003175 http://www.xspan.org/obo.owl# AEO:0000175 male anatomical structure AEO:0000175 A part of the body present only in males. AEO:JB A part of the body present only in females. EHDAA2:0003176 http://www.xspan.org/obo.owl# AEO:0000176 female anatomical structure AEO:0000176 A part of the body present only in females. AEO:JB A part of the body present only in hermaphrodites. EHDAA2:0003177 http://www.xspan.org/obo.owl# AEO:0000177 hermaphrodite anatomical structure AEO:0000177 A part of the body present only in hermaphrodites. AEO:JB A flexible joint between two bones that is made of unossified connective tissue. EHDAA2:0003178 http://www.xspan.org/obo.owl# AEO:0000178 fibrous joint AEO:0000178 A flexible joint between two bones that is made of unossified connective tissue. AEO:JB The articular cartilage covering of the region of bone within a synoval joint. EHDAA2:0003179 http://www.xspan.org/obo.owl# AEO:0000179 joint-associated cartilage AEO:0000179 The articular cartilage covering of the region of bone within a synoval joint. AEO:JB Cartilage that may provide the template for an endochondral bone or that may be a disinct entity in the skeleton. EHDAA2:0003180 http://www.xspan.org/obo.owl# AEO:0000180 non-joint-associated cartilage AEO:0000180 Cartilage that may provide the template for an endochondral bone or that may be a disinct entity in the skeleton. AEO:JB The epithelial membrane between bone ends that forms the lateral borders of the synovial cavity and secretes synovial fluid. EHDAA2:0003181 http://www.xspan.org/obo.owl# AEO:0000181 synovial membrane AEO:0000181 The epithelial membrane between bone ends that forms the lateral borders of the synovial cavity and secretes synovial fluid. AEO:JB A joint connecting two or more bones with cartilage at the bone ends and a synovial membrane that secretes synovial fluid conecting the bones and sealing the synovial cavity. EHDAA2:0003183 http://www.xspan.org/obo.owl# AEO:0000183 synovial joint AEO:0000183 A joint connecting two or more bones with cartilage at the bone ends and a synovial membrane that secretes synovial fluid conecting the bones and sealing the synovial cavity. AEO:JB A component of the exoskeleton. EHDAA2:0003185 http://www.xspan.org/obo.owl# AEO:0000185 exoskeletal tissue AEO:0000185 A component of the exoskeleton. AEO:JB The cavity within the body that contains the visceral organs. EHDAA2:0003186 UBERON:0002323 http://www.xspan.org/obo.owl# AEO:0000186 body cavity AEO:0000186 The cavity within the body that contains the visceral organs. AEO:JB Multi-tissue structure one of whose parts contains stem cells that can replace other parts. EHDAA2:0003187 http://www.xspan.org/obo.owl# AEO:0000187 multi-tissue structure with stem cells AEO:0000187 Multi-tissue structure one of whose parts contains stem cells that can replace other parts. AEO:JB An acellular fluid portion of organism substance that is produced by the organism for some non-waste purpose. EHDAA2:0003188 http://www.xspan.org/obo.owl# AEO:0000188 acellular fluid anatomical entity AEO:0000188 An acellular fluid portion of organism substance that is produced by the organism for some non-waste purpose. AEO:JB Multi-tissue epithelial structure one of whose parts contains stem cells that can replace other parts. EHDAA2:0003189 http://www.xspan.org/obo.owl# AEO:0000189 epithelial tissue with stem cells AEO:0000189 Multi-tissue epithelial structure one of whose parts contains stem cells that can replace other parts. AEO:JB Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. EHDAA2:0003010 http://www.xspan.org/obo.owl# anatomical surface. AEO:0000192 anatomical surface feature true AEO:0000192 Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. CARO:MAH Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs. EHDAA2:0003193 UBERON:0000026 http://www.xspan.org/obo.owl# AEO:0000193 appendage AEO:0000193 Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs. CARO:MAH All the products of the fertilized egg. EHDAA2:0003205 http://www.xspan.org/obo.owl# AEO:0000194 conceptus AEO:0000194 All the products of the fertilized egg. AEO:JB The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism. http://www.xspan.org/obo.owl# AEO:0000195 extraembryonic component AEO:0000195 The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism. AEO:JB An anatomical structure present in the larval form of an animal. HDAA2:0003126 http://www.xspan.org/obo.owl# AEO:0000196 larval anatomical structure AEO:0000196 An anatomical structure present in the larval form of an animal. AEO:JB A head-associated surface sense organ. http://www.xspan.org/obo.owl# AEO:0000198 antenna AEO:0000198 A head-associated surface sense organ. CARO:MAH A membranous structure with more than one cell type, one or more of which secretes mucus, that lines body passages which communicate with the exterior. EHDAA2:0003234 http://www.xspan.org/obo.owl# mucosa AEO:0000199 mucous membrane AEO:0000199 A membranous structure with more than one cell type, one or more of which secretes mucus, that lines body passages which communicate with the exterior. AEO:JB An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers. EHDAA2:0003233 http://www.xspan.org/obo.owl# AEO:0000200 regenerating anatomical structure AEO:0000200 An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers. AEO:JB A group of neurons that provides a nervous response from a tissue. EHDAA2:0003200 http://www.xspan.org/obo.owl# AEO:0000201 afferent nerve AEO:0000201 A group of neurons that provides a nervous response from a tissue. AEO:JB A group of neurons that provides a nervous signal to a tissue. EHDAA2:0003231 http://www.xspan.org/obo.owl# AEO:0000202 efferent nerve AEO:0000202 A group of neurons that provides a nervous signal to a tissue. AEO:JB An anatomical entity consisting of a single or a few multinucleated structures. HDAA2:0003248 http://www.xspan.org/obo.owl# AEO:0000203 syncytium AEO:0000203 An anatomical entity consisting of a single or a few multinucleated structures. AEO.:JB An roughly circular indentation in a surface. EHDAA2:003249 http://www.xspan.org/obo.owl# AEO:0000204 pit AEO:0000204 An roughly circular indentation in a surface. AEO:JB A roughly circular bulge in a surface. EHDAA2:0003250 http://www.xspan.org/obo.owl# AEO:0000205 protuberance AEO:0000205 A roughly circular bulge in a surface. AEO:JB An epithelium that extends its surface area by peripheral movement. EHDAA2:0003251 http://www.xspan.org/obo.owl# AEO:0000206 migrating epithelium AEO:0000206 An epithelium that extends its surface area by peripheral movement. AEO:JB An epithelial tube that transports blood. EHDAA2:0003252 http://www.xspan.org/obo.owl# AEO:0000207 blood vessel AEO:0000207 An epithelial tube that transports blood. AEO:JB An epithelial tube that transports blood away from the heart. EHDAA2:0003253 http://www.xspan.org/obo.owl# AEO:0000208 artery AEO:0000208 An epithelial tube that transports blood away from the heart. AEO:JB An epithelial tube that transports blood towards the heart. EHDAA2:0003254 http://www.xspan.org/obo.owl# AEO:0000209 vein AEO:0000209 An epithelial tube that transports blood towards the heart. AEO:JB Anatomical group whose component structures are arranged in a row. FBbt:00100152 HDAA2:0003255 http://www.xspan.org/obo.owl# AEO:0000210 row AEO:0000210 Anatomical group whose component structures are arranged in a row. DBft:DOS The sum of all the anlagen and primordia that will develop into a single functional system. FBbt:0004003 HDAA2:0003256 http://www.xspan.org/obo.owl# AEO:0000211 non-connected developing functional system AEO:0000211 The sum of all the anlagen and primordia that will develop into a single functional system. FBbt:DOS The mesenchymal derivative of a somite that will migrate to surround the neural tube and form vertebrae. EHDAA2:0003257 http://www.xspan.org/obo.owl# AEO:0000212 sclerotome AEO:0000212 The mesenchymal derivative of a somite that will migrate to surround the neural tube and form vertebrae. AEO:JB A delimited region of osteoblasts representing the early stages of bone formation. EHDAA2:0003258 http://www.xspan.org/obo.owl# AEO:0000213 bone condensation AEO:0000213 A delimited region of osteoblasts representing the early stages of bone formation. AEO:JB The bilaminar epithelium formed from the myotome and dermatome. EHDAA2:0003259 http://www.xspan.org/obo.owl# AEO:0000214 dermomyotome AEO:0000214 The bilaminar epithelium formed from the myotome and dermatome. AEO:JB A volume that is mainly bounded but has an opening to another cavity or to the outside. EHDAA2:0003078 http://www.xspan.org/obo.owl# AEO:0000215 open cavity AEO:0000215 A volume that is mainly bounded but has an opening to another cavity or to the outside. JB:AEO A cord of epithelial cells without a lumen and usually several cells thick. EHDAA2:0004052 http://www.xspan.org/obo.owl# AEO:0000216 epithelial cord AEO:0000216 A cord of epithelial cells without a lumen and usually several cells thick. JB:AEO A simple coherent tissue or a localized population of similar cells that are actively migrating. EHDAA2:0004053 http://www.xspan.org/obo.owl# AEO:0000217 migrating developing tissue AEO:0000217 A simple coherent tissue or a localized population of similar cells that are actively migrating. JB:AEO A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. EHDAA2:0003112 http://www.xspan.org/obo.owl# AEO:0000218 developing epithelial placode AEO:0000218 A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. JB:AEO A network of interlinked veins. EHDAA2:0004112 http://www.xspan.org/obo.owl# AEO:0000219 vascular plexus AEO:0000219 A network of interlinked veins. JB:AEO Each of a set of hard, bony enamel-coated structures in the jaws of most vertebrates, used for biting and chewing. EHDAA2:0004605 http://www.xspan.org/obo.owl# AEO:0000220 tooth AEO:0000220 Each of a set of hard, bony enamel-coated structures in the jaws of most vertebrates, used for biting and chewing. JB:AEO An anatomical space with at least one opening to another space or the exterior. http://www.xspan.org/obo.owl# AEO:0000221 open anatomical space AEO:0000221 An anatomical space with at least one opening to another space or the exterior. JB:AEO An anatomical space with no opening to another space or to the exterior. http://www.xspan.org/obo.owl# AEO:0000222 enclosed anatomical space AEO:0000222 An anatomical space with no opening to another space or to the exterior. JB:AEO Tissue that is predominantly made of fat cells. EHDAA2:0003120 http://www.xspan.org/obo.owl# AEO:0000493 fat tissue AEO:0000493 Tissue that is predominantly made of fat cells. AEO:JB A ganglion containing sensory neurons. http://www.xspan.org/obo.owl# AEO:0001000 sensory ganglion AEO:0001000 A ganglion containing sensory neurons. JB:AEO A ganglion that is part of the autonomic nervous system. http://www.xspan.org/obo.owl# AEO:0001001 autonomic ganglion AEO:0001001 A ganglion that is part of the autonomic nervous system. JB:AEO A localized group of blood capillaries. http://www.xspan.org/obo.owl# AEO:0001002 capillary bed AEO:0001002 A localized group of blood capillaries. JB:AEO An acellular structure typically composed of collagen, glycoproteins and glycosaminoglycans. http://www.xspan.org/obo.owl# AEO:0001003 acellular extracellular matrix AEO:0001003 An acellular structure typically composed of collagen, glycoproteins and glycosaminoglycans. JB:AEO A flattened appendage on a marine animal. http://www.xspan.org/obo.owl# AEO:0001004 fin AEO:0001004 A flattened appendage on a marine animal. JB:AEO VAO:0000099 A non-cellular substance released by a cell, gland or tissue. UBERON:0000456 http://www.xspan.org/obo.owl# AEO:0001005 secretion AEO:0001005 A non-cellular substance released by a cell, gland or tissue. JB:AEO Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body. UBERON:0000174 http://www.xspan.org/obo.owl# AEO:0001006 excreta AEO:0001006 Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body. JB:AEO An epithelium within an embryo or larva that is undergoing a major developmental change. EHDAA2:0004653 http://www.xspan.org/obo.owl# AEO:0001007 developing epithelium AEO:0001007 An epithelium within an embryo or larva that is undergoing a major developmental change. AEO:JB An embryonic or larval epithelium that is committed to form part of the nervous system. EHDAA2:0004654 http://www.xspan.org/obo.owl# AEO:0001008 neuroepithelium AEO:0001008 An embryonic or larval epithelium that is committed to form part of the nervous system. AEO:JB An epithelium that is undergoing proliferation to provide large numbers of neuronal cells. EHDAA2:0004655 http://www.xspan.org/obo.owl# AEO:0001009 proliferating neuroepithelium AEO:0001009 An epithelium that is undergoing proliferation to provide large numbers of neuronal cells. AEO:JB A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells. EHDAA2:0004656 http://www.xspan.org/obo.owl# AEO:0001010 differentiating neuroepithelium AEO:0001010 A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells. AEO:JB Neuronal tissue composed predominantly of axons. EHDAA2:0004657 http://www.xspan.org/obo.owl# AEO:0001011 neuronal white matter AEO:0001011 Neuronal tissue composed predominantly of axons. AEO:JB A neuronal tissue composed predominantly of nerve bodies and neuronal support cells. EHDAA2:0004658 http://www.xspan.org/obo.owl# AEO:0001012 neuronal grey matter AEO:0001012 A neuronal tissue composed predominantly of nerve bodies and neuronal support cells. AEO:JB An extended columnar domain of predominantly neuronal tissue in the central nervous system. EHDAA2:0004659 http://www.xspan.org/obo.owl# AEO:0001013 neuronal column AEO:0001013 An extended columnar domain of predominantly neuronal tissue in the central nervous system. AEO:JB A compact group of cells differentiating to become a ganglion or a neuronal nucleus. EHDAA2:0004660 http://www.xspan.org/obo.owl# AEO:0001014 differentiating neuronal condensation AEO:0001014 A compact group of cells differentiating to become a ganglion or a neuronal nucleus. AEO:JB An epithelial ball that forms from paraxial mesoderm. http://www.xspan.org/obo.owl# AEO:0001015 somite AEO:0001015 An epithelial ball that forms from paraxial mesoderm. JB:AEO A mesenchyme-derived anatomical entity undergoing a transtion to become another structure. http://www.xspan.org/obo.owl# AEO:0001016 developing mesenchymal structure AEO:0001016 A mesenchyme-derived anatomical entity undergoing a transtion to become another structure. AEO:JB A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells. http://www.xspan.org/obo.owl# AEO:0001017 dermatome AEO:0001017 A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells. AEO:JB A transitional population of migrating mesenchymal cells that derive from somites and that will become muscle cells. http://www.xspan.org/obo.owl# AEO:0001018 myotome AEO:0001018 A transitional population of migrating mesenchymal cells that derive from somites and that will become muscle cells. AEO:JB A germ cell population that has not undergone meiosis. http://www.xspan.org/obo.owl# AEO:0001019 developing germ cell population AEO:0001019 A germ cell population that has not undergone meiosis. AEO:JB A population of cells that are predominantly immature or mature germ cells. http://www.xspan.org/obo.owl# AEO:0001020 reproductive cell population AEO:0001020 A population of cells that are predominantly immature or mature germ cells. AEO:JB A group of cells capable of regenerating themselves and also of producing one or more populations of differentiated cells. http://www.xspan.org/obo.owl# AEO:0001021 stem cell population AEO:0001021 A group of cells capable of regenerating themselves and also of producing one or more populations of differentiated cells. AEO:JB Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. EHDAA2:0003000 UBERON:0001062 http://www.xspan.org/obo.owl# CARO:0000000 anatomical entity CARO:0000000 Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. CARO:MAH Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. EHDAA2:0003003 UBERON:0000061 http://www.xspan.org/obo.owl# CARO:0000003 anatomical structure CARO:0000003 Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. CARO:MAH Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. EHDAA2:0003004 UBERON:0000463 http://www.xspan.org/obo.owl# portion of organism substance CARO:0000004 non-tissue substance CARO:0000004 Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. CARO:MAH Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. EHDAA2:0003005 UBERON:0000464 http://www.xspan.org/obo.owl# CARO:0000005 anatomical space CARO:0000005 Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. CARO:MAH Anatomical entity that has mass. EHDAA2:0003006 UBERON:0000465 http://www.xspan.org/obo.owl# CARO:0000006 material anatomical entity CARO:0000006 Anatomical entity that has mass. CARO:MAH Anatomical entity that has no mass. EHDAA2:0003007 UBERON:0000466 http://www.xspan.org/obo.owl# CARO:0000007 immaterial anatomical entity CARO:0000007 Anatomical entity that has no mass. CARO:MAH Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. EHDAA2:0003008 http://www.xspan.org/obo.owl# CARO:0000008 anatomical line CARO:0000008 Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. CARO:MAH Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface. EHDAA2:0003009 http://www.xspan.org/obo.owl# CARO:0000009 anatomical point CARO:0000009 Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface. CARO:MAH Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. EHDAA2:0003192 UBERON:0000015 http://www.xspan.org/obo.owl# CARO:0000010 anatomical surface CARO:0000010 Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. CARO:MAH Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity. EHDAA2:0003011 http://www.xspan.org/obo.owl# CARO:0000011 anatomical system CARO:0000011 Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity. CARO:MAH Anatomical structure that is an individual member of a species and consists of more than one cell. EHDAA2:0003191 UBERON:0000468 http://www.xspan.org/obo.owl# CARO:0000012 multi-cellular organism CARO:0000012 Anatomical structure that is an individual member of a species and consists of more than one cell. JB:DEF Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. http://www.xspan.org/obo.owl# CARO:0000013 cell CARO:0000013 Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. CARO:MAH Anatomical structure that is a direct part of the cell. http://www.xspan.org/obo.owl# CARO:0000014 cell component CARO:0000014 Anatomical structure that is a direct part of the cell. CARO:MAH Multi-tissue structure that is part of a compound organ. EHDAA2:0003019 http://www.xspan.org/obo.owl# CARO:0000019 compound organ component CARO:0000019 Multi-tissue structure that is part of a compound organ. CARO:MAH Multi-tissue structure that is not part of a compound organ. EHDAA2:0003190 http://www.xspan.org/obo.owl# CARO:0000021 simple organ CARO:0000021 Multi-tissue structure that is not part of a compound organ. CARO:MAH Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. EHDAA2:0003024 http://www.xspan.org/obo.owl# CARO:0000024 compound organ CARO:0000024 Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. CARO:MAH Gonochoristic organism that can produce male gametes. http://www.xspan.org/obo.owl# CARO:0000027 male organism CARO:0000027 Gonochoristic organism that can produce male gametes. CARO:MAH Gonochoristic organism that can produce female gametes. http://www.xspan.org/obo.owl# CARO:0000028 female organism CARO:0000028 Gonochoristic organism that can produce female gametes. CARO:MAH Multi-cellular organism that can produce both male and female gametes. http://www.xspan.org/obo.owl# dioecious organism CARO:0000029 hermaphroditic organism CARO:0000029 Multi-cellular organism that can produce both male and female gametes. CARO:MAH Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. EHDAA2:0003032 UBERON:0000475 http://www.xspan.org/obo.owl# CARO:0000032 organism subdivision CARO:0000032 Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. CARO:MAH Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. EHDAA2:0003040 UBERON:0000476 http://www.xspan.org/obo.owl# CARO:0000040 acellular anatomical structure CARO:0000040 Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. CARO:MAH Anatomical group that has its parts adjacent to one another. Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells or body part subdivisions that are adjacent to, or continuous with one another; does not constitute an organ, organ system or organ system subdivision, or body part or body part subdivision. EHDAA2:0003041 UBERON:0000477 http://www.xspan.org/obo.owl# CARO:0000041 anatomical cluster CARO:0000041 Anatomical group that has its parts adjacent to one another. Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells or body part subdivisions that are adjacent to, or continuous with one another; does not constitute an organ, organ system or organ system subdivision, or body part or body part subdivision. CARO:MAH Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. EHDAA2:0003042 UBERON:0000478 http://www.xspan.org/obo.owl# CARO:0000042 extraembryonic structure CARO:0000042 Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. CARO:MAH Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. EHDAA2:0003043 UBERON:0000479 http://www.xspan.org/obo.owl# portion of tissue. CARO:0000043 simple tissue CARO:0000043 Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. CARO:MAH Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex. http://www.xspan.org/obo.owl# consecutive hermaphroditic organism CARO:0000045 sequential hermaphroditic organism CARO:0000045 Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex. CARO:MAH Hermaphroditic organism that produces both male and female gametes at the same time. http://www.xspan.org/obo.owl# serially hermaphroditic organism CARO:0000046 synchronous hermaphroditic organism CARO:0000046 Hermaphroditic organism that produces both male and female gametes at the same time. CARO:MAH Multi-cellular organism that has male and female sexes. http://www.xspan.org/obo.owl# monoecious organism CARO:0000048 gonochoristic organism CARO:0000048 Multi-cellular organism that has male and female sexes. CARO:MAH Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex. http://www.xspan.org/obo.owl# CARO:0000049 protandrous hermaphroditic organism CARO:0000049 Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex. CARO:MAH Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex. http://www.xspan.org/obo.owl# CARO:0000050 protogynous hermaphroditic organism CARO:0000050 Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex. CARO:MAH Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. EHDAA2:0003054 UBERON:0000480 http://www.xspan.org/obo.owl# CARO:0000054 anatomical group CARO:0000054 Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. CARO:MAH Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. EHDAA2:0003055 UBERON:0000481 http://www.xspan.org/obo.owl# CARO:0000055 multi-tissue structure CARO:0000055 Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. CARO:MAH Anatomical space that is part of a cell. http://www.xspan.org/obo.owl# CARO:0000062 cell space CARO:0000062 Anatomical space that is part of a cell. CARO:mah Multi-cellular organism that does not produce gametes. http://www.xspan.org/obo.owl# CARO:0000063 asexual organism CARO:0000063 Multi-cellular organism that does not produce gametes. CARO:MAH Cell that is an individual member of a species. http://www.xspan.org/obo.owl# CARO:0000064 single cell organism CARO:0000064 Cell that is an individual member of a species. CARO:MAH Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. EHDAA2:0003065 http://www.xspan.org/obo.owl# CARO:0000065 basal lamina CARO:0000065 Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. CARO:MAH Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. EHDAA2:0003066 http://www.xspan.org/obo.owl# CARO:0000066 epithelium CARO:0000066 Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. CARO:MAH Unilaminar epithelium that consists of a single layer of cuboidal cells. EHDAA2:0003067 http://www.xspan.org/obo.owl# CARO:0000067 simple cuboidal epithelium CARO:0000067 Unilaminar epithelium that consists of a single layer of cuboidal cells. CARO:MAH Unilaminar epithelium that consists of a single layer of columnar cells. EHDAA2:0003068 http://www.xspan.org/obo.owl# CARO:0000068 columnar epithelium CARO:0000068 Unilaminar epithelium that consists of a single layer of columnar cells. CARO:MAH Epithelium that consists of more than one layer of epithelial cells. EHDAA2:0003069 http://www.xspan.org/obo.owl# CARO:0000069 multilaminar epithelium CARO:0000069 Epithelium that consists of more than one layer of epithelial cells. CARO:MAH Unilaminar epithelium that consists of a single layer of squamous cells. EHDAA2:0003070 http://www.xspan.org/obo.owl# CARO:0000070 simple squamous epithelium CARO:0000070 Unilaminar epithelium that consists of a single layer of squamous cells. CARO:MAH Epithelium that consists of epithelial cells not arranged in one ore more layers. EHDAA2:0003071 http://www.xspan.org/obo.owl# CARO:0000071 atypical epithelium CARO:0000071 Epithelium that consists of epithelial cells not arranged in one ore more layers. CARO:MAH Compound organ that contains one or more macroscopic anatomical spaces. EHDAA2:0003072 http://www.xspan.org/obo.owl# CARO:0000072 cavitated compound organ CARO:0000072 Compound organ that contains one or more macroscopic anatomical spaces. CARO:MAH Epithelium that consists of a single layer of epithelial cells. EHDAA2:0003073 http://www.xspan.org/obo.owl# CARO:0000073 unilaminar epithelium CARO:0000073 Epithelium that consists of a single layer of epithelial cells. CARO:MAH Compound organ that does not contain macroscopic anatomical spaces. EHDAA2:0003074 http://www.xspan.org/obo.owl# CARO:0000074 solid compound organ CARO:0000074 Compound organ that does not contain macroscopic anatomical spaces. CARO:MAH Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. http://www.xspan.org/obo.owl# CARO:0000077 epithelial cell CARO:0000077 Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. CARO:MAH CL:0000066 Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. cell CL:0000000 cell CL:0000000 Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. CARO:mah cell CL:0000003 cell in vivo CL:0000003 cell CL:0000012 cell by class CL:0000012 A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte. cell nurse cell CL:0000015 male germ cell CL:0000015 A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte. GOC:tfm PMID:15848391 Female germ cell is a germ cell that supports female gamete production. cell CL:0000021 female germ cell CL:0000021 Female germ cell is a germ cell that supports female gamete production. GOC:tfm PMID:11023867 PMID:20454446 cell CL:0000029 neuron neural crest derived CL:0000029 cell CL:0000031 neuroblast CL:0000031 A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. cell CL:0000034 stem cell CL:0000034 A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. GOC:tfm MESH:A.11.872 A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. cell CL:0000039 Originally this term had some plant germ line cell children germ line cell CL:0000039 A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. GOC:tfm ISBN:0721662544 A precursor cell with a limited number of potential fates. cell blast cell CL:0000055 non-terminally differentiated cell CL:0000055 A precursor cell with a limited number of potential fates. SANBI:mhl A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. cell CL:0000057 fibroblast CL:0000057 A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. ISBN:0517223651 MESH:A.11.329.228 http://63.198.234.228/OpenFMA/Fibroblast.html An immature cartilage-producing cell found in growing cartilage. cell chrondoplast CL:0000058 chondroblast CL:0000058 An immature cartilage-producing cell found in growing cartilage. GOC:tfm ISBN:0618947256 A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. cell CL:0000062 osteoblast CL:0000062 A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. MESH:A.11.329.629 A classification of cells by their microscopic appearance. cell CL:0000063 cell by histology CL:0000063 A classification of cells by their microscopic appearance. FB:ma GOC:tfm A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. cell Epitheliocyte CL:0000066 epithelial cell CL:0000066 A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. FB:ma GOC:tfm MESH:A.11.436 cell CL:0000068 duct epithelial cell CL:0000068 An endothelial cell that lines the vasculature. cell Cuboidal endothelial cell of vascular tree CL:0000071 blood vessel endothelial cell CL:0000071 An endothelial cell that lines the vasculature. GOC:tfm cell CL:0000075 columnar/cuboidal epithelial cell CL:0000075 cell CL:0000076 squamous epithelial cell CL:0000076 cell CL:0000079 stratified epithelial cell CL:0000079 A cell which moves among different tissues of the body, via blood, lymph, or other medium. cell CL:0000080 circulating cell CL:0000080 A cell which moves among different tissues of the body, via blood, lymph, or other medium. GOC:add A cell found predominately in the blood. cell CL:0000081 blood cell CL:0000081 A cell found predominately in the blood. GOC:add GOC:tfm cell CL:0000095 neuron associated cell CL:0000095 Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. cell CL:0000099 interneuron CL:0000099 Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. GOC:tfm MESH:A.08.663.358 Any neuron having a sensory function; an afferent neuron conveying sensory impulses. cell CL:0000101 sensory neuron CL:0000101 Any neuron having a sensory function; an afferent neuron conveying sensory impulses. ISBN:0721662544 A neruon whose cell body is within an autonomic ganglion. cell CL:0000107 autonomic neuron CL:0000107 A neruon whose cell body is within an autonomic ganglion. GOC:tfm A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. cell neuroglia neuroglial cell CL:0000125 glial cell CL:0000125 A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. MESH:A.08.637 A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together. cell Macrogliocyte CL:0000126 macroglial cell CL:0000126 A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together. GOC:tfm ISBN:0721662544 A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. cell astrocytic glia CL:0000127 astrocyte CL:0000127 A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. GOC:_tfm GOC:dsd MESH:A.08.637.200 MESH:D001253 PMID:11746784 PMID:12162730 PMID:12898703 PMID:20942978 A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. cell oligodendroglia CL:0000128 oligodendrocyte CL:0000128 A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. MESH:A.08.637.600 A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive. cell MF.microglia.CNS brain macrophage brain-resident macrophage hortega cells microglia microgliocyte CL:0000129 microglial cell CL:0000129 A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive. GOC:add GOC:dsd GOC:tfm ISBN:0721601464 MESH:D017628 PMID:11517395 PMID:12430718 PMID:14561199 PMID:14612429 PMID:16177057 PMID:19461673 PMID:2089275 hortega cells http://www.copewithcytokines.de/ microgliocyte http://www.copewithcytokines.de/ A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. This cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs. CL:0002452 cell BMSC CFU-F MSC Stem Cells, Mesenchymal bone marrow stromal cells colony-forming unit-fibroblast marrow stromal cells mesenchymal precursor cell mesenchymal progenitor cells mesenchymal stem cell mesenchymal stromal cell mesenchymal stromal cells CL:0000134 mesenchymal cell CL:0000134 A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. This cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs. FB:ma GOC:dsd PMCID:PMC2613570 PMID:10102814j PMID:16923606 PMID:_17986482 PMID:_19960544 http://en.wikipedia.org/wiki/Mesenchymal_stem_cell http://www.copewithcytokines.de/cope.cgi?key=mesenchymal%20stem%20cells MSC PMID:11378515 Stem Cells, Mesenchymal MESH:D044982 marrow stromal cells PMID:11378515 mesenchymal progenitor cells MESH:D044982 A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. CL:0000450 cell adipocyte adipose cell CL:0000136 fat cell CL:0000136 A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. MESH:A.11.329.114 Polymorphic cell that form cartilage. cell cartilage cell CL:0000138 chondrocyte CL:0000138 Polymorphic cell that form cartilage. MESH:A.11.329.171 A classification of cells by their primary end goal or behavior. cell CL:0000144 cell by function CL:0000144 A classification of cells by their primary end goal or behavior. FB:ma A cell that specializes in controlled release of one or more substances. cell CL:0000151 secretory cell CL:0000151 A cell that specializes in controlled release of one or more substances. GOC:tfm ISBN:0721662544 An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. cell neurosecretory cell CL:0000165 neuroendocrine cell CL:0000165 An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. MESH:A.06.688 A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns. cell myocyte CL:0000187 muscle cell CL:0000187 A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns. MESH:A.11.620 A somatic cell located in skeletal muscle. cell CL:0000188 skeletal muscle cell CL:0000188 A somatic cell located in skeletal muscle. GOC:tfm A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). CL:0000191 cell SMCs myocytes, smooth muscle non-striated muscle cell smooth muscle fiber CL:0000192 smooth muscle cell CL:0000192 A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). MESH:A.11.620.520 MESH:D032389 PMID:9315361 SMCs PMID:9315361 myocytes, smooth muscle MESH:D032389 cell CL:0000196 flight muscle cell CL:0000196 A cell whose function is determined by the generation or the reception of an electric signal. cell CL:0000211 electrically active cell CL:0000211 A cell whose function is determined by the generation or the reception of an electric signal. FB:ma A classification of cells by the number of their nuclei. cell CL:0000224 cell by nuclear number CL:0000224 A classification of cells by the number of their nuclei. FB:ma GOC:tfm A cell with more than one nucleus. cell syncitium syncytial cell syncytium CL:0000228 multinucleate cell CL:0000228 A cell with more than one nucleus. FB:ma A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. cell CL:0000243 glial cell (sensu Vertebrata) CL:0000243 A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. MESH:A.08.637 cell CL:0000327 extracellular matrix secreting cell CL:0000327 A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors. cell CL:0000335 mesenchyme condensation cell CL:0000335 A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors. GOC:tfm PMID:5025404 A cell whose function is determined by its response to an electric signal. cell CL:0000393 electrically responsive cell CL:0000393 A cell whose function is determined by its response to an electric signal. FB:ma A classification of cells by the number of haploid genome equivalents of their nucleus or nuclei. cell CL:0000414 cell by ploidy CL:0000414 A classification of cells by the number of haploid genome equivalents of their nucleus or nuclei. FB:ma GOC:tfm cell CL:0000444 obliquely striated muscle cell CL:0000444 cell CL:0000445 apoptosis fated cell CL:0000445 cell CL:0000468 neuroglioblast CL:0000468 A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. cell CL:0000499 stromal cell CL:0000499 A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. GOC:tfm MESH:A.11.329.830 A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo. It It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. cell plasmidotrophoblast syncytial trophoblast syntrophoblast CL:0000525 syncytiotrophoblast cell CL:0000525 A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo. It It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. GOC:tfm ISBN:0323052908 A neuron which conveys sensory information centrally from the periphery. cell input neuron CL:0000526 afferent neuron CL:0000526 A neuron which conveys sensory information centrally from the periphery. GOC:tfm MESH:A.08.663.650 A neuron which sends impulses peripherally to activate muscles or secretory cells. cell output neuron CL:0000527 efferent neuron CL:0000527 A neuron which sends impulses peripherally to activate muscles or secretory cells. MESH:A.08.663.655 The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. cell nerve cell CL:0000540 neuron CL:0000540 The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. MESH:A.08.663 MESH:D009474 The reproductive cell in multicellular organisms. cell CL:0000586 germ cell CL:0000586 The reproductive cell in multicellular organisms. MESH:A.05.360.490 An epithelial cell that secretes cuticle. cell CL:0000658 cuticle secreting cell CL:0000658 An epithelial cell that secretes cuticle. GOC:tfm An extracellular matrix secreting cell that secretes collagen. cell CL:0000667 collagen secreting cell CL:0000667 An extracellular matrix secreting cell that secretes collagen. GOC:tfm A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. cell Gonocyte Primitive germ cell CL:0000670 primordial germ cell CL:0000670 A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. GOC:tfm PMID:1381289 cell CL:0000680 muscle precursor cell CL:0000680 Muscle cell which has as its direct parts myofilaments organized into sarcomeres. cell CL:0000737 striated muscle cell CL:0000737 Muscle cell which has as its direct parts myofilaments organized into sarcomeres. GOC:tfm ISBN:0721662544 A myocyte located in the heart. The contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. cell cardiac myocyte cardiocyte cardiomyocyte heart muscle cell CL:0000746 cardiac muscle cell CL:0000746 A myocyte located in the heart. The contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. GOC:tfm ISBN:0323052908 A cell of a hematopoietic lineage. cell haematopoietic cell haemopoietic cell hemopoietic cell CL:0000988 hematopoietic cell CL:0000988 A cell of a hematopoietic lineage. GOC:add GO_REF:0000031 A cell containing at least one nucleus. cell CL:0002242 nucleate cell CL:0002242 A cell containing at least one nucleus. GOC:tfm A cell that is part of the nervous system. cell CL:0002319 neural cell CL:0002319 A cell that is part of the nervous system. GOC:tfm ISBN:0618947256 A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. CL:1000406 cell CL:0002320 connective tissue cell CL:0002320 A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. GOC:tfm ISBN:0618947256 A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). cell CL:0002371 somatic cell CL:0002371 A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). GOC:tfm ISBN:0721662544 A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. CL:0000369 cell myotubule single cell sarcomere skeletal muscle fiber CL:0002372 myotube CL:0002372 A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. GOC:tfm ISBN:0323052908 A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. cell CL:0002573 Schwann cell CL:0002573 A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. GOC:tfm OBO-Edit 2.1.1-beta7 04:07:2013 20:24 anatomical_entity_ontology 1.2 jonathanbard anatomical_entity_ontology this version corrects the namespace and includes some flybase alt_IDs anatomical_entity_ontology has_part has_part