An ontology about assay nodes Assay node Aliya Aktau Creative Commons Attribution 3.0 (CC BY 3.0) Assay node 1.0 An identifier assigned to raw or processed data from a performed experimental assay Assay Identifier Assay Identifier The calendar date on which something is to start or did start Start Date Start Date A product name and model number of a manufacturer's genomic (dna) sequencer sequencing instrument model A product name and model number of a manufacturer's genomic (dna) sequencer sequencing instrument model SOLiD 4hq System SOLiD 4hq System SOLiD 5500 SOLiD 5500 SOLiD 5500xl SOLiD 5500xl SOLiD PI System SOLiD PI System SOLiD System 2.0 SOLiD System 2.0 SOLiD System 3.0 SOLiD System 3.0 454 Genome Sequencer FLX Titanium A DNA sequencer first manufactured by 454 Life Science Corporation in 2005, and enables pyrosequencing to be performed. It comprises both optics and fluidics subsystems, which are controlled by a computer subsystem. The fluidics subsystem ensures accurate reagent dispensing. It consists of a reagents cassette (which holds the reagent containers), a sipper manifold, pumps, valves, and debubblers. The fluidics subsystem flows the sequencing reagents across the wells of the PicoTiterPlate device… 454 Genome Sequencer A DNA sequencer first manufactured by 454 Life Science Corporation in 2005, and enables pyrosequencing to be performed. It comprises both optics and fluidics subsystems, which are controlled by a computer subsystem. The fluidics subsystem ensures accurate reagent dispensing. It consists of a reagents cassette (which holds the reagent containers), a sipper manifold, pumps, valves, and debubblers. The fluidics subsystem flows the sequencing reagents across the wells of the PicoTiterPlate device… 454 Genome Sequencer Junior A DNA sequencer manufactured by the Illumina corporation Illumina sequencing instrument model Illumina sequencing instrument model A DNA sequencer manufactured by Solexa as one of its first sequencer lines, launched in 2006, and capable of sequencing 1 gigabase (Gb) of data in a single run Illumina Genome Analyzer Illumina Genome Analyzer A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry, and contains a HiScan Reader for sequencing and microarray-based analyses as well as an "SQ Module" to support microfluidics Illumina HiScanSQ A DNA sequencer manufactured by the Illumina corporation using sequence-by-synthesis chemistry, and contains a HiScan Reader for sequencing and microarray-based analyses as well as an "SQ Module" to support microfluidics Illumina HiScanSQ A DNA sequencer manufactured by the Pacific Biosciences corporation Pacific Biosciences sequencing instrument model Pacific Biosciences sequencing instrument model A DNA sequencer manufactured by the Pacific Biosciences corporation which utilizes “SMRT Cells” for single-molecule real-time sequencing. The RS was the first model made by the company PacBio RS PacBio RS A DNA sequencer built upon single molecule real-time sequencing technology, optimized for generation with long reads and high consensus accuracy, and manufactured by the Pacific Biosciences corporation PacBio Sequel PacBio Sequel A DNA sequencer built upon single molecule real-time sequencing technology, optimized for generation of highly accurate ("HiFi") long reads, and which is manufactured by the Pacific Biosciences corporation PacBio Sequel II PacBio Sequel II A DNA sequencer manufactured by the Ion Torrent corporation Ion Torrent sequencing instrument model Ion Torrent sequencing instrument model A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and has an output capacity of 300 MB - 1GB Ion Torrent PGM Ion Torrent PGM A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and has an output capacity of up to 15 Gb Ion Torrent Proton Ion Torrent Proton A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and requires only a small amount of input material while producing data faster than the S5 model Ion Torrent S5 XL Ion Torrent S5 XL A DNA sequencer manufactured by the Ion Torrent corporation which utilizes Ion semiconductor sequencing and requires only a small amount of input material Ion Torrent S5 Ion Torrent S5 Oxford Nanopore sequencing instrument model Oxford Nanopore sequencing instrument model Oxford Nanopore sequencing instrument model A DNA sequencer that is manufactured by the Oxford Nanopore Technologies corporation, that can run and analyze up to five individual flow cells producing up to 150 Gb of data per run. The sequencer produces real-time results and utilizes nanopore technology with the option of running the flow cells concurrently or individual Oxford Nanopore GridION Oxford Nanopore GridION A portable DNA sequencer which is manufactured by the Oxford Nanopore Technologies corporation, that uses consumable flow cells producing up to 30 Gb of DNA sequence data per flow cell. The sequencer produces real-time results and utilizes nanopore technology with up to 512 nanopore channels in the sensor array Oxford Nanopore MinION Oxford Nanopore MinION A DNA sequencer that is manufactured by the Oxford Nanopore Technologies corporation, capable of running up to 48 flow cells and producing up to 7.6 Tb of data per run. The sequencer produces real-time results and utilizes Nanopore technology, with each flow cell allowing up to 3,000 nanopores to be sequencing simultaneously Oxford Nanopore PromethION Oxford Nanopore PromethION A DNA sequencer manufactured by the BGI Genomics corporation BGI Genomics sequencing instrument model BGI Genomics sequencing instrument model A DNA sequencer manufactured by the BGI Genomics corporation that utilizes Probe-Anchor Synthesis (cPAS) chemistry and "DNA Nanoballs" BGI Genomics BGISEQ-500 BGI Genomics BGISEQ-500 A process to identify and determine the primary structure of, and the order of constituents in a biopolymer Biopolymer Sequencing Biopolymer Sequencing The manual or automated determination of the nucleotide order in a nucleic acid fragment obtained after the completion of a sequencing process Nucleotide Sequence Read Nucleotide Sequence Read The determination of the order of a set of sequenced nucleic acid fragments via alignment to a reference genome Aligned Sequence Read Aligned Sequence Read A set of sequenced nucleic acid fragments that have not been aligned to each other or to a reference sequence or genome Unaligned Sequence Read Unaligned Sequence Read The determination of the sequence of component residues in a macromolecule, e.g. amino acids in a protein or nucleotide bases in DNA/RNA or the computational analysis performed to determine the similarities between nonidentical proteins or molecules of DNA or RNA Sequence Analysis Sequence Analysis The process of determining the sequence of purines and pyrimidines in nucleic acids and polynucleotides Nucleic Acid Sequencing Nucleic Acid Sequencing The process of determining the sequence of amino acids within a protein molecule Protein Sequencing Protein Sequencing 454 Genome Sequence 20 Is a DNA sequencer which is manufactured by Applied Biosystems and which enable DNA sequencing by ligation AB SOLiD System AB SOLiD System 454 Genome Sequencer FLX Is a DNA sequence which is manufactured by Illumina (Solexa) corporation. it support sequencing of single or paired end clone libraries relying on sequencing by synthesis technology Illumina Genome Analyzer II Is a DNA sequencer manufacturer by Helicos Corporation to carry out Single Molecule sequencing using reversible termination chemistry HeliScope Single Molecule Sequencer HeliScope Single Molecule Sequencer A device in which a measure function inheres Measurement device Measurement device An Illumina Genome Analyzer II which is manufactured by the Illumina corporation. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology. The Genome Analyzer IIx is the most widely adopted next-generation sequencing platform and proven and published across the broadest range of research applications Genome Analyzer IIx Genome Analyzer IIx A DNA sequencer which is manufactured by the Illumina corporation. Built upon sequencing by synthesis technology, the machine provides an end-to-end solution (cluster generation, amplification, sequencing, and data analysis) in a single machine MiSeq MiSeq SOLiD 3 Plus System SOLiD 3 Plus System A DNA sequencer which is manufactured by the Pacific Biosciences corporation. Built upon single molecule real-time sequencing technology, the machine is optimized for generation with long reads and high consensus accuracy PacBio RS II PacBio RS II A DNA sequencer which is a desktop sequencer ideal for smaller-scale studies manufactured by the Illumina corporation. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology NextSeq 500 NextSeq 500 An AB SOLid System which is manufacted by the Applied Biosystems corporation. Built upon SOLiD sequencing technology, the machine generates greater than 1 billion mappable reads per run SOLiD 4 System SOLiD 4 System An Illumina Genome Analyzer II which is manufactured by the Illumina corporation. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology. The Genome Analyzer IIe makes industry-leading next-generation sequencing technology accessible to more laboratories Genome Analyzer IIe Genome Analyzer IIe 1.0 An ontology about assay nodes Assay node Aliya Aktau Creative Commons Attribution 3.0 (CC BY 3.0) Assay node 1.0