ONTO-PERL 1.45 27:08:2018 15:13 1.4 jmc definition database_cross_reference has_exact_synonym has_obo_format_version has_obo_namespace is_a CHEBI:24431 Root of all ontological terms. measure.ontology COMO:0000000 term COMO:0000000 Root of all Context and Measurement Terms. oterm_ref true true true true ORef: COMO:0000001 measure.ontology COMO:0000001 Context COMO:0000001 Context describing experimental design. oterm_ref true true true ORef: COMO:0000002 measure.ontology COMO:0000002 Experimental Context COMO:0000002 Context describing the purpose of a series. oterm_ref true true true ORef: COMO:0000003 measure.ontology COMO:0000003 Series Type COMO:0000003 A time series, in which a series of measurements was taken at different timepoints. float true true true true true UO:0000003 measure.ontology COMO:0000004 Time Series COMO:0000004 A replicate series, e.g., biological or technical replicates. int true true true true true UO:0000189 UO:0000189 measure.ontology COMO:0000005 Replicate Series COMO:0000005 A human-readable description of an experimental condition. string true true true true true measure.ontology COMO:0000006 Condition COMO:0000006 A description of one or more methods used in an experiment. string true true true true true measure.ontology COMO:0000007 Method COMO:0000007 A description of one or more algorithm parameters. string true true true true true measure.ontology COMO:0000008 Algorithm Parameter COMO:0000008 A date, formatted as YYYY-MM-DD. string true true true true true measure.ontology COMO:0000009 Date COMO:0000009 A time, formatted as HH:MM (see DateTime to include the date). string true true true true true measure.ontology COMO:0000010 Time COMO:0000010 A human-readable comment. string true true true true true measure.ontology COMO:0000011 Comment COMO:0000011 A description of instrument(s) used. string true true true true true measure.ontology COMO:0000012 Instrument COMO:0000012 A human-readable description of a category. string true true true true true measure.ontology COMO:0000013 Category COMO:0000013 Homogenized. measure.ontology COMO:0000014 Homogenized COMO:0000014 Anaerobic. boolean true true true true true measure.ontology COMO:0000015 Anaerobic COMO:0000015 Aerobic. boolean true true true measure.ontology COMO:0000016 Aerobic COMO:0000016 Undisturbed. measure.ontology COMO:0000017 Undisturbed COMO:0000017 Microtypes that provide mathematical context. oterm_ref true true true ORef: COMO:0000018 measure.ontology COMO:0000018 Mathematical Context COMO:0000018 Normalized; describe how in the Method or Protocol. measure.ontology COMO:0000019 Normalized COMO:0000019 Human-readable context saying what another microtype is measured relative to. string true true true measure.ontology COMO:0000020 Relative COMO:0000020 Increase. measure.ontology COMO:0000021 Increase COMO:0000021 Decrease. measure.ontology COMO:0000022 Decrease COMO:0000022 Gain. measure.ontology COMO:0000023 Gain COMO:0000023 Loss. measure.ontology COMO:0000024 Loss COMO:0000024 Nearest. measure.ontology COMO:0000025 Nearest COMO:0000025 Describes the context of a molecule in a chemical reaction or experiment. oterm_ref true true true ORef: COMO:0000026 measure.ontology COMO:0000026 Chemical Context COMO:0000026 Use when the type of molecule varies along a dimension. string true true measure.ontology COMO:0000027 Molecule COMO:0000027 Human-readable description of a chemical reaction. string true true true true true measure.ontology COMO:0000028 Reaction COMO:0000028 Human-readable description of a type of surface. string true true true true true measure.ontology COMO:0000029 Surface Type COMO:0000029 Human-readable description of the type of bead used in a (geo)chemical experiment. string true true true measure.ontology COMO:0000030 Bead Type COMO:0000030 Size of a bead used in a (geo)chemical experiment. float true true true UO:0000001 measure.ontology COMO:0000031 Bead Size COMO:0000031 Thermodynamic context for a reaction. measure.ontology COMO:0000032 Thermodynamic Context COMO:0000032 delta-G, a change in Gibbs Free Energy for a chemical reaction. float true true true UO:0000111 measure.ontology COMO:0000033 delta-G COMO:0000033 delta-H, a change in enthalpy for a chemical reaction. float true true true UO:0000111 measure.ontology COMO:0000034 delta-H COMO:0000034 Rate of reaction multiplied by the volume, divided by mass of protein. float true true true measure.ontology COMO:0000035 Specific Activity COMO:0000035 Wavelength of radiation. float true true true UO:0000001 measure.ontology COMO:0000036 Wavelength COMO:0000036 Human-readable context for the state or type of matter, e.g., dissolved, or in soil string true true true true true measure.ontology COMO:0000037 State COMO:0000037 Detection limit for an instrument or experiment. float true true true true true measure.ontology COMO:0000038 Detection Limit COMO:0000038 Biological Context. oterm_ref true true true ORef: COMO:0000039 measure.ontology COMO:0000039 Biological Context COMO:0000039 Cell. measure.ontology COMO:0000040 Cell COMO:0000040 Colony. measure.ontology COMO:0000041 Colony COMO:0000041 Strain of microbe, or isolate ID. string true true Microbial Isolate measure.ontology COMO:0000042 Microbial Strain COMO:0000042 Strain name, for microbes that are not PEDOMETER isolates. string true true true true measure.ontology COMO:0000043 Microbial Strain Name COMO:0000043 Taxon. string true true measure.ontology COMO:0000045 Taxon COMO:0000045 Use this to describe taxa by name (use Taxon ID instead if possible). string true true true measure.ontology COMO:0000046 Taxon Name COMO:0000046 Use this to link to defined PEDOMETER taxa. object_ref true true true true Ref: DA:0000030.Taxon.name measure.ontology COMO:0000047 Taxon ID COMO:0000047 Media type. string true true measure.ontology COMO:0000048 Media COMO:0000048 Media name. string true true true true true measure.ontology COMO:0000049 Media Name COMO:0000049 Media composition. string true true true measure.ontology COMO:0000050 Media Composition COMO:0000050 Media addition. string true true true true true measure.ontology COMO:0000052 Media Addition COMO:0000052 Metabolite. measure.ontology COMO:0000053 Metabolite COMO:0000053 Substrate. measure.ontology COMO:0000054 Substrate COMO:0000054 Carbon source used for microbial growth. string true true true true true measure.ontology COMO:0000055 Carbon Source COMO:0000055 Nitrogen source used for microbial growth. string true true true true true measure.ontology COMO:0000056 Nitrogen Source COMO:0000056 Electron donor used for microbial growth. string true true true true true measure.ontology COMO:0000057 Electron Donor COMO:0000057 Electron acceptor used for microbial growth. string true true true true true measure.ontology COMO:0000058 Electron Acceptor COMO:0000058 Gene. string true true measure.ontology COMO:0000059 Gene COMO:0000059 Gene name, e.g., dsrA. object_ref true true true true Ref: DA:0000034.Gene.aliases measure.ontology COMO:0000060 Gene Name COMO:0000060 Gene GI. int true true true true measure.ontology COMO:0000061 Gene GI COMO:0000061 Homologous Gene. measure.ontology COMO:0000062 Homologous Gene COMO:0000062 Orthologous Gene. measure.ontology COMO:0000063 Orthologous Gene COMO:0000063 Paralogous Gene. measure.ontology COMO:0000064 Paralogous Gene COMO:0000064 Essential Gene. measure.ontology COMO:0000065 Essential Gene COMO:0000065 Protein. string true true true true true measure.ontology COMO:0000066 Protein COMO:0000066 Protein Annotation. measure.ontology COMO:0000067 Protein Annotation COMO:0000067 KEGG Subsystem. oterm_ref true true true ORef: KEGG measure.ontology COMO:0000068 KEGG Subsystem COMO:0000068 TIGR Role. oterm_ref true true true ORef: TIGR measure.ontology COMO:0000069 TIGR Role COMO:0000069 SEED Subsystem. measure.ontology COMO:0000070 SEED Subsystem COMO:0000070 SEED Subsystem ID. string true true true measure.ontology COMO:0000071 SEED Subsystem ID COMO:0000071 Protein Domain. measure.ontology COMO:0000073 Protein Domain COMO:0000073 Pfam Domain. measure.ontology COMO:0000074 Pfam Domain COMO:0000074 Pfam Domain Accession. oterm_ref true true true ORef: Pfam measure.ontology COMO:0000075 Pfam Domain Accession COMO:0000075 Operon. measure.ontology COMO:0000076 Operon COMO:0000076 Ribosome. measure.ontology COMO:0000077 Ribosome COMO:0000077 Growth Parameter. measure.ontology COMO:0000078 Growth Parameter COMO:0000078 Growth Rate. float true true true UO:0000280 measure.ontology COMO:0000079 Growth Rate COMO:0000079 Doubling Time. float true true true UO:0000003 measure.ontology COMO:0000080 Doubling Time COMO:0000080 Time Since Inoculation. float true true true true true UO:0000003 measure.ontology COMO:0000081 Time Since Inoculation COMO:0000081 Growth Efficiency. measure.ontology COMO:0000082 Growth Efficiency COMO:0000082 Gene Regulation. measure.ontology COMO:0000083 Gene Regulation COMO:0000083 Up-regulated. measure.ontology COMO:0000084 Up-regulated COMO:0000084 Down-regulated. measure.ontology COMO:0000085 Down-regulated COMO:0000085 Transcription Factor. measure.ontology COMO:0000086 Transcription Factor COMO:0000086 Motif. measure.ontology COMO:0000087 Motif COMO:0000087 Binding Site. measure.ontology COMO:0000088 Binding Site COMO:0000088 Regulon. measure.ontology COMO:0000089 Regulon COMO:0000089 Taxonomic Level. oterm_ref true true true true true ORef: COMO:0000090 measure.ontology COMO:0000090 Taxonomic Level COMO:0000090 Strain Change. Mutation measure.ontology COMO:0000091 Strain Change COMO:0000091 Strain Change Effect. oterm_ref true true true ORef: COMO:0000092 measure.ontology COMO:0000092 Strain Change Effect COMO:0000092 Synonymous. measure.ontology COMO:0000093 Synonymous COMO:0000093 Non-Synonymous. measure.ontology COMO:0000094 Non-Synonymous COMO:0000094 Frameshift. measure.ontology COMO:0000095 Frameshift COMO:0000095 Stop. measure.ontology COMO:0000096 Stop COMO:0000096 Knockout. measure.ontology COMO:0000097 Knockout COMO:0000097 Environment. measure.ontology COMO:0000098 Environment COMO:0000098 Environmental Sample Location. string true true true true true Borehole Core Well measure.ontology COMO:0000099 Environmental Sample Location COMO:0000099 Environmental Sample. string true true true true true measure.ontology COMO:0000100 Environmental Sample COMO:0000100 Environmental Sample Name. string true true true true true measure.ontology COMO:0000101 Environmental Sample Name COMO:0000101 Environmental Parameter. string true true true true true measure.ontology COMO:0000103 Environmental Parameter COMO:0000103 Ecology. measure.ontology COMO:0000104 Ecology COMO:0000104 Community Assembly Process. oterm_ref true true true ORef: COMO:0000105 measure.ontology COMO:0000105 Community Assembly Process COMO:0000105 Variable Selection. measure.ontology COMO:0000106 Variable Selection COMO:0000106 Homogenous Selection. measure.ontology COMO:0000107 Homogenous Selection COMO:0000107 Dispersal Limitation. measure.ontology COMO:0000108 Dispersal Limitation COMO:0000108 Homogenizing Dispersal. measure.ontology COMO:0000109 Homogenizing Dispersal COMO:0000109 Undominated. measure.ontology COMO:0000110 Undominated COMO:0000110 Sequencing. measure.ontology COMO:0000111 Sequencing COMO:0000111 Read Type. oterm_ref true true true ORef: COMO:0000112 measure.ontology COMO:0000112 Read Type COMO:0000112 Paired End Read. measure.ontology COMO:0000113 Paired End Read COMO:0000113 Single End Read. measure.ontology COMO:0000114 Single End Read COMO:0000114 Base Pair. measure.ontology COMO:0000115 Base Pair COMO:0000115 Sequencing Technology. oterm_ref true true true ORef: COMO:0000116 measure.ontology COMO:0000116 Sequencing Technology COMO:0000116 Illumina. measure.ontology COMO:0000117 Illumina COMO:0000117 Pacbio. measure.ontology COMO:0000118 Pacbio COMO:0000118 GC content. measure.ontology COMO:0000119 GC content COMO:0000119 Measurement. oterm_ref true true true true true ORef: COMO:0000120 measure.ontology COMO:0000120 Measurement COMO:0000120 pH. float true true true true true UO:0000196 UO:0000247 measure.ontology COMO:0000121 pH COMO:0000121 Time Elapsed. float true true true UO:0000003 measure.ontology COMO:0000122 Time Elapsed COMO:0000122 Temperature. float true true true true true UO:0000005 measure.ontology COMO:0000123 Temperature COMO:0000123 Conductivity. float true true true true true UO:0000262 measure.ontology COMO:0000124 Conductivity COMO:0000124 Redox Potential. float true true true true true UO:0000217 measure.ontology COMO:0000125 Redox Potential COMO:0000125 Count. int true true true true true UO:0000189 UO:0000200 UO:0000189 UO:0000200 Absolute Abundance measure.ontology COMO:0000126 Count COMO:0000126 Optical Density. float true true true true true UO:0000186 UO:0000186 measure.ontology COMO:0000127 Optical Density COMO:0000127 Size. float true true true UO:0000095 UO:0000001 measure.ontology COMO:0000128 Size COMO:0000128 Concentration. float true true true true true UO:0000187 UO:0000322 UO:0000051 UO:0000052 UO:0000166 UO:0000187 measure.ontology COMO:0000129 Concentration COMO:0000129 Hybridization Intensity. float true true true measure.ontology COMO:0000130 Hybridization Intensity COMO:0000130 Expression Level. float true true true measure.ontology COMO:0000131 Expression Level COMO:0000131 Enzyme Activity. float true true true measure.ontology COMO:0000132 Enzyme Activity COMO:0000132 Absorbance. float true true true measure.ontology COMO:0000133 Absorbance COMO:0000133 Heat. float true true true measure.ontology COMO:0000134 Heat COMO:0000134 Mass. float true true true true true UO:0000002 measure.ontology COMO:0000135 Mass COMO:0000135 Fitness Score. float true true true true true COMO:0000379 measure.ontology COMO:0000137 Fitness Score COMO:0000137 Genetic Interaction Score. float true true true measure.ontology COMO:0000138 Genetic Interaction Score COMO:0000138 Stoichiometric Ratio. float true true true measure.ontology COMO:0000139 Stoichiometric Ratio COMO:0000139 Relative amounts of multiple categories of the same object. float true true true true true UO:0010006 measure.ontology COMO:0000140 Relative Abundance COMO:0000140 Binary. boolean true true true measure.ontology COMO:0000141 Binary COMO:0000141 Boolean property indicating whether something (e.g., an isolate) grows. boolean true true true true true measure.ontology COMO:0000142 Growth COMO:0000142 Boolean property indicating whether something (e.g., an isolate) is active. boolean true true true true true measure.ontology COMO:0000143 Activity COMO:0000143 Boolean property indicating whether something (e.g., an isolate) is present. boolean true true true true true measure.ontology COMO:0000144 Presence COMO:0000144 Boolean property indicating whether something (e.g., a gene) is essential. boolean true true true true true measure.ontology COMO:0000145 Essentiality COMO:0000145 Statistic. oterm_ref true true true true true ORef: COMO:0000146 measure.ontology COMO:0000146 Statistic COMO:0000146 Average. float true true true true true measure.ontology COMO:0000147 Average COMO:0000147 Difference. float true true true measure.ontology COMO:0000148 Difference COMO:0000148 Standard Deviation. float true true true true true measure.ontology COMO:0000149 Standard Deviation COMO:0000149 Standard Error. float true true true true true measure.ontology COMO:0000150 Standard Error COMO:0000150 Minimum. float true true true measure.ontology COMO:0000151 Minimum COMO:0000151 Maximum. float true true true measure.ontology COMO:0000152 Maximum COMO:0000152 Median. float true true true measure.ontology COMO:0000153 Median COMO:0000153 Ratio. float true true true measure.ontology COMO:0000154 Ratio COMO:0000154 Log Ratio. float true true true measure.ontology COMO:0000155 Log Ratio COMO:0000155 p Value. float true true true measure.ontology COMO:0000156 p Value COMO:0000156 T Score. float true true true measure.ontology COMO:0000157 T Score COMO:0000157 Frequency. float true true true measure.ontology COMO:0000158 Frequency COMO:0000158 Fold Enrichment. float true true true true true measure.ontology COMO:0000159 Fold Enrichment COMO:0000159 Confidence. float true true true true true UO:0010006 measure.ontology COMO:0000160 Confidence COMO:0000160 Evaluation. measure.ontology COMO:0000161 Evaluation COMO:0000161 Precision. float true true true measure.ontology COMO:0000162 Precision COMO:0000162 Recall. float true true true measure.ontology COMO:0000163 Recall COMO:0000163 True Positive. int true true true TP measure.ontology COMO:0000164 True Positive COMO:0000164 False Positive. int true true true FP measure.ontology COMO:0000165 False Positive COMO:0000165 True Negative. int true true true TN measure.ontology COMO:0000166 True Negative COMO:0000166 False Negative. int true true true FN measure.ontology COMO:0000167 False Negative COMO:0000167 Correlation. float true true true measure.ontology COMO:0000168 Correlation COMO:0000168 Pearson. float true true true measure.ontology COMO:0000169 Pearson COMO:0000169 Spearman. float true true true measure.ontology COMO:0000170 Spearman COMO:0000170 Kendall tau. float true true true measure.ontology COMO:0000171 Kendall tau COMO:0000171 Goodman and Kruskal's gamma. float true true true measure.ontology COMO:0000172 Goodman and Kruskal's gamma COMO:0000172 Multivariate Analysis. measure.ontology COMO:0000173 Multivariate Analysis COMO:0000173 Factor Analysis. measure.ontology COMO:0000174 Factor Analysis COMO:0000174 Factor. int true true true measure.ontology COMO:0000175 Factor COMO:0000175 Factor Loading. float true true true measure.ontology COMO:0000176 Factor Loading COMO:0000176 Principal Component Analysis. measure.ontology COMO:0000177 Principal Component Analysis COMO:0000177 Principal Component. int true true true measure.ontology COMO:0000178 Principal Component COMO:0000178 Component Weight. float true true true measure.ontology COMO:0000179 Component Weight COMO:0000179 DateTime. string true true true true true measure.ontology COMO:0000180 DateTime COMO:0000180 Pressure. float true true true true true UO:0000109 measure.ontology COMO:0000181 Pressure COMO:0000181 Turbidity. float true true true true true UO:0000315 UO:0000315 measure.ontology COMO:0000182 Turbidity COMO:0000182 Reagent. measure.ontology COMO:0000183 Reagent COMO:0000183 OTU. string true true true true true Operational Taxonomic Unit measure.ontology COMO:0000184 OTU COMO:0000184 ASV. string true true Amplicon Sequence Variant ESV Exact Sequence Variant Sub-OTU Unique Sequence Variant measure.ontology COMO:0000185 ASV COMO:0000185 Strand of DNA oterm_ref true true true true true ORef: COMO:0000186 measure.ontology COMO:0000186 Strand COMO:0000186 Forward. measure.ontology COMO:0000187 Forward COMO:0000187 Reverse Complement. measure.ontology COMO:0000188 Reverse Complement COMO:0000188 Sequence Type. oterm_ref true true true true true ORef: COMO:0000189 measure.ontology COMO:0000189 Sequence Type COMO:0000189 16S Sequence. measure.ontology COMO:0000190 16S Sequence COMO:0000190 18S Sequence. measure.ontology COMO:0000191 18S Sequence COMO:0000191 ITS Sequence. measure.ontology COMO:0000192 ITS Sequence COMO:0000192 ITS-1 Sequence. measure.ontology COMO:0000193 ITS-1 Sequence COMO:0000193 ITS-2 Sequence. measure.ontology COMO:0000194 ITS-2 Sequence COMO:0000194 Genome Sequence. measure.ontology COMO:0000195 Genome Sequence COMO:0000195 Insertion. measure.ontology COMO:0000196 Insertion COMO:0000196 Deletion. measure.ontology COMO:0000197 Deletion COMO:0000197 Substitution. measure.ontology COMO:0000198 Substitution COMO:0000198 Condition, chosen from list of defined experimental conditions in the Data Clearinghouse. object_ref true true true true Ref: DA:0000036.Condition.name measure.ontology COMO:0000200 Condition ID COMO:0000200 Time Zone, e.g., PDT string true true true measure.ontology COMO:0000201 Time Zone COMO:0000201 Description. string true true true true true measure.ontology COMO:0000202 Description COMO:0000202 Link to other data, e.g., a DOI or URL. string true true true true true measure.ontology COMO:0000203 Link COMO:0000203 Category of experimental process used to create a dataset. oterm_ref true true true ORef: PROCESS:0000001 measure.ontology COMO:0000204 Experimental Process COMO:0000204 Name of a person. Note that PEDOMETER people should be listed as 'PEDOMETER personnel' instead. string true true true measure.ontology COMO:0000205 Person COMO:0000205 Campaign. string true true true measure.ontology COMO:0000206 Campaign COMO:0000206 Input. string true true true measure.ontology COMO:0000207 Input COMO:0000207 Output. string true true true measure.ontology COMO:0000208 Output COMO:0000208 Physical Context. measure.ontology COMO:0000209 Physical Context COMO:0000209 Location. string true true true true true measure.ontology COMO:0000210 Location COMO:0000210 Latitude. float true true true true true UO:0000185 measure.ontology COMO:0000211 Latitude COMO:0000211 Longitude. float true true true true true UO:0000185 measure.ontology COMO:0000212 Longitude COMO:0000212 Continent. string true true true measure.ontology COMO:0000213 Continent COMO:0000213 Country. string true true true measure.ontology COMO:0000214 Country COMO:0000214 Region. string true true true measure.ontology COMO:0000215 Region COMO:0000215 Biome. oterm_ref true true true ORef: ENVO:01000254 measure.ontology COMO:0000216 Biome COMO:0000216 Environmental Feature. oterm_ref true true true ORef: ENVO:00002297 measure.ontology COMO:0000217 Environmental Feature COMO:0000217 Distance. Add context indicating reference points, e.g., From and To. float true true true true true UO:0000001 measure.ontology COMO:0000218 Distance COMO:0000218 Depth. Add context indicating reference poitns, e.g., Top and Bottom. float true true true true true UO:0000001 measure.ontology COMO:0000219 Depth COMO:0000219 Elevation. Add context indicating reference poitns, e.g., Top and Bottom. float true true true true true UO:0000001 measure.ontology COMO:0000220 Elevation COMO:0000220 OTU Name. string true true true measure.ontology COMO:0000221 OTU Name COMO:0000221 NCBI Taxon, chosen from names in the NCBI taxonomy. oterm_ref true true true true true ORef: NCBITaxon:1 measure.ontology COMO:0000223 NCBI Taxon ID COMO:0000223 Gene, chosen from list of defined genes in the Data Clearinghouse. object_ref true true true true Ref: DA:0000034.Gene.gene_id measure.ontology COMO:0000224 Gene ID COMO:0000224 Strain Change Type. oterm_ref true true true ORef: COMO:0000227 measure.ontology COMO:0000227 Strain Change Type COMO:0000227 Environmental Material. oterm_ref true true true ORef: ENVO:00010483 measure.ontology COMO:0000230 Environmental Material COMO:0000230 Community. string true true true true true measure.ontology COMO:0000231 Community COMO:0000231 Community Name. string true true true measure.ontology COMO:0000232 Community Name COMO:0000232 Community ID, chosen from list of defined PEDOMETER communities. object_ref true true true true Ref: DA:0000039.Community.name measure.ontology COMO:0000233 Community ID COMO:0000233 Community Type. oterm_ref true true true ORef: COMO:0000234 measure.ontology COMO:0000234 Community Type COMO:0000234 Isolate Community. measure.ontology COMO:0000235 Isolate Community COMO:0000235 Enrichment. measure.ontology COMO:0000236 Enrichment COMO:0000236 Active Fraction. measure.ontology COMO:0000237 Active Fraction COMO:0000237 Assemblage. measure.ontology COMO:0000238 Assemblage COMO:0000238 Consortium. measure.ontology COMO:0000239 Consortium COMO:0000239 Contig. string true true true true true measure.ontology COMO:0000240 Contig COMO:0000240 Sequence Position. measure.ontology COMO:0000241 Sequence Position COMO:0000241 Sequence Start. int true true true true true UO:0000244 UO:0000244 measure.ontology COMO:0000242 Sequence Start COMO:0000242 Sequence Stop. int true true true true true UO:0000244 UO:0000244 measure.ontology COMO:0000243 Sequence Stop COMO:0000243 Sequence Length. int true true true true true UO:0000244 UO:0000244 measure.ontology COMO:0000244 Sequence Length COMO:0000244 Genome. measure.ontology COMO:0000245 Genome COMO:0000245 Genome ID, chosen from list of annotated PEDOMETER genomes. object_ref true true true Ref: DA:0000033.Genome.name measure.ontology COMO:0000246 Genome ID COMO:0000246 Read Set. string true true true true true Reads measure.ontology COMO:0000247 Read Set COMO:0000247 Reads ID, chosen from list of reads in the Data Clearinghouse. object_ref true true true true Ref: DA:0000042.Reads.name measure.ontology COMO:0000248 Reads ID COMO:0000248 Read. measure.ontology COMO:0000249 Read COMO:0000249 Gene Annotation. measure.ontology COMO:0000250 Gene Annotation COMO:0000250 Kingdom. measure.ontology COMO:0000251 Kingdom COMO:0000251 Phylum. measure.ontology COMO:0000252 Phylum COMO:0000252 Class. measure.ontology COMO:0000253 Class COMO:0000253 Order. measure.ontology COMO:0000254 Order COMO:0000254 Family. measure.ontology COMO:0000255 Family COMO:0000255 Genus. measure.ontology COMO:0000256 Genus COMO:0000256 Species. measure.ontology COMO:0000257 Species COMO:0000257 Environmental Chemical. oterm_ref true true true true ORef: CHEBI:24431 measure.ontology COMO:0000258 Environmental Chemical COMO:0000258 Environmental Measurement. oterm_ref true true true true ORef: COMO:0000120 measure.ontology COMO:0000259 Environmental Measurement COMO:0000259 Knockout Library. measure.ontology COMO:0000260 Knockout Library COMO:0000260 Tn-Seq Library. measure.ontology COMO:0000261 Tn-Seq Library COMO:0000261 Tn-Seq Library Name. object_ref true true true true true Ref: DA:0000047.TnSeq_Library.name measure.ontology COMO:0000262 Tn-Seq Library Name COMO:0000262 Tn-Seq Primers Model. string true true true measure.ontology COMO:0000263 Tn-Seq Primers Model COMO:0000263 Rate. float true true true measure.ontology COMO:0000264 Rate COMO:0000264 Assembly. measure.ontology COMO:0000279 Assembly COMO:0000279 Assembly ID, chosen from list of PEDOMETER assemblies. object_ref true true true Ref: DA:0000031.Assembly.name measure.ontology COMO:0000280 Assembly ID COMO:0000280 Sequence. string true true true true true measure.ontology COMO:0000282 Sequence COMO:0000282 Control. string true true true true true measure.ontology COMO:0000283 Control COMO:0000283 Negative Control. string true true true measure.ontology COMO:0000284 Negative Control COMO:0000284 Positive Control. string true true true measure.ontology COMO:0000285 Positive Control COMO:0000285 Replicate. measure.ontology COMO:0000286 Replicate COMO:0000286 Technical Replicate. string true true true measure.ontology COMO:0000287 Technical Replicate COMO:0000287 Biological Replicate. string true true true measure.ontology COMO:0000288 Biological Replicate COMO:0000288 Subsample. string true true true measure.ontology COMO:0000289 Subsample COMO:0000289 Variable Name. string true true true measure.ontology COMO:0000290 Variable Name COMO:0000290 Variable Type. measure.ontology COMO:0000291 Variable Type COMO:0000291 Dimension. measure.ontology COMO:0000292 Dimension COMO:0000292 Data Variables Type. oterm_ref true true true true ORef: DA:0000000 measure.ontology COMO:0000293 Data Variables Type COMO:0000293 Units not in UO. oterm_ref true true true true ORef: COMO:0000294 measure.ontology COMO:0000294 Units not in UO COMO:0000294 microsiemen per centimeter. microsiemen per cm measure.ontology COMO:0000295 microsiemen per centimeter COMO:0000295 Explained Variance. measure.ontology COMO:0000299 Explained Variance COMO:0000299 Phase of matter, e.g., solid. string true true true measure.ontology COMO:0000300 Phase COMO:0000300 Specific Conductivity. float true true true true true UO:0000262 measure.ontology COMO:0000301 Specific Conductivity COMO:0000301 Salinity. float true true true true true COMO:0000378 measure.ontology COMO:0000302 Salinity COMO:0000302 Resistivity. float true true true true true COMO:0000377 measure.ontology COMO:0000303 Resistivity COMO:0000303 Saturation. float true true true true true UO:0010006 measure.ontology COMO:0000304 Saturation COMO:0000304 Density. float true true true true true UO:0000182 measure.ontology COMO:0000305 Density COMO:0000305 Partial Pressure. float true true true true true UO:0000109 measure.ontology COMO:0000306 Partial Pressure COMO:0000306 torr. measure.ontology COMO:0000307 torr COMO:0000307 ohm-cm. measure.ontology COMO:0000308 ohm-cm COMO:0000308 practical salinity unit. PSU measure.ontology COMO:0000309 practical salinity unit COMO:0000309 Use as context for locations, e.g., the top end of a depth measurement. string true true true measure.ontology COMO:0000311 Top COMO:0000311 Use as context for locations, e.g., the bottom end of a depth measurement. string true true true measure.ontology COMO:0000312 Bottom COMO:0000312 Charge. float true true true true true UO:0000187 UO:0000217 UO:0000187 measure.ontology COMO:0000313 Charge COMO:0000313 Air Pressure. float true true true true true UO:0000109 measure.ontology COMO:0000314 Air Pressure COMO:0000314 Water Pressure. float true true true true true UO:0000109 measure.ontology COMO:0000315 Water Pressure COMO:0000315 Wind Speed. float true true true true true UO:0000060 measure.ontology COMO:0000316 Wind Speed COMO:0000316 Gust Speed. float true true true true true UO:0000060 measure.ontology COMO:0000317 Gust Speed COMO:0000317 Solar Radiation. float true true true true true UO:0000154 measure.ontology COMO:0000318 Solar Radiation COMO:0000318 Rainfall. float true true true true true UO:0000001 measure.ontology COMO:0000319 Rainfall COMO:0000319 Wind Direction. float true true true true true UO:0000185 measure.ontology COMO:0000320 Wind Direction COMO:0000320 Relative Humidity. float true true true true true UO:0010006 measure.ontology COMO:0000321 Relative Humidity COMO:0000321 mile per hour. mph measure.ontology COMO:0000322 mile per hour COMO:0000322 m^3 per m^3. measure.ontology COMO:0000324 m^3 per m^3 COMO:0000324 millibar. mbar measure.ontology COMO:0000325 millibar COMO:0000325 Environmental Community. measure.ontology COMO:0000326 Environmental Community COMO:0000326 Protocol. measure.ontology COMO:0000327 Protocol COMO:0000327 Protocol, chosen from list of defined PEDOMETER protocols. object_ref true true true Ref: DA:0000049.Protocol.name measure.ontology COMO:0000328 Protocol ID COMO:0000328 Bin (metagenomic). measure.ontology COMO:0000329 Bin COMO:0000329 Bin, chosen from metagenomic bins stored in the Data Clearinghouse. object_ref true true true Ref: DA:0000032.Bin.name measure.ontology COMO:0000330 Bin ID COMO:0000330 Boolean property indicating whether something is available. boolean true true true true true measure.ontology COMO:0000333 Availability COMO:0000333 US State. string true true true measure.ontology COMO:0000334 US State COMO:0000334 State Plane Coordinate. measure.ontology COMO:0000335 State Plane Coordinate COMO:0000335 Easting, in State Plane coordinates. Add a State Plane Zone for context. float true true true true true UO:0000008 measure.ontology COMO:0000336 Easting COMO:0000336 Northing, in State Plane coordinates. Add a State Plane Zone for context. float true true true true true UO:0000008 measure.ontology COMO:0000337 Northing COMO:0000337 State Plane Zone, e.g. '4100 - Tennessee'. string true true true measure.ontology COMO:0000338 State Plane Zone COMO:0000338 Position. string true true true true true measure.ontology COMO:0000339 Position COMO:0000339 Upper. measure.ontology COMO:0000340 Upper COMO:0000340 Lower. measure.ontology COMO:0000341 Lower COMO:0000341 Middle. measure.ontology COMO:0000342 Middle COMO:0000342 Diameter. float true true true true true UO:0000001 measure.ontology COMO:0000343 Diameter COMO:0000343 Inner Diameter. float true true true true true UO:0000001 measure.ontology COMO:0000344 Inner Diameter COMO:0000344 Outer Diameter. float true true true true true UO:0000001 measure.ontology COMO:0000345 Outer Diameter COMO:0000345 Use as context, for example, to label inorganic or organic carbon. boolean true true true measure.ontology COMO:0000346 Organic COMO:0000346 millimhos per centimeter. mmhos per cm measure.ontology COMO:0000347 millimhos per centimeter COMO:0000347 parts per million by volume. ppmv measure.ontology COMO:0000348 parts per million by volume COMO:0000348 nanogram per liter. ng/L measure.ontology COMO:0000349 nanogram per liter COMO:0000349 Molecular Weight. float true true true true true UO:0000221 measure.ontology COMO:0000350 Molecular Weight COMO:0000350 Taxonomic Domain. measure.ontology COMO:0000351 Taxonomic Domain COMO:0000351 milligram per gram. mg/g measure.ontology COMO:0000352 milligram per gram COMO:0000352 millisiemen per centimeter. millisiemen per cm measure.ontology COMO:0000353 millisiemen per centimeter COMO:0000353 Image. measure.ontology COMO:0000354 Image COMO:0000354 MIME type. string true true true measure.ontology COMO:0000357 MIME type COMO:0000357 Coefficient of Variation. float true true true true true CV measure.ontology COMO:0000358 Coefficient of Variation COMO:0000358 Weight. float true true true true true UO:0000002 measure.ontology COMO:0000359 Weight COMO:0000359 Volume. float true true true true true UO:0000095 measure.ontology COMO:0000360 Volume COMO:0000360 cells per gram. measure.ontology COMO:0000361 cells per gram COMO:0000361 Above. boolean true true true true true measure.ontology COMO:0000362 Above COMO:0000362 Below. boolean true true true true true measure.ontology COMO:0000363 Below COMO:0000363 Molecules not in ChEBI. oterm_ref true true true true ORef: COMO:0000365 measure.ontology COMO:0000365 Molecules not in ChEBI COMO:0000365 sodium oxide. Na2O measure.ontology COMO:0000366 sodium oxide COMO:0000366 barium oxide. BaO measure.ontology COMO:0000367 barium oxide COMO:0000367 Error Range. float true true true true true measure.ontology COMO:0000371 Error Range COMO:0000371 manganese(II) oxide . MnO measure.ontology COMO:0000372 manganese(II) oxide COMO:0000372 cobalt(II) oxide. CoO measure.ontology COMO:0000373 cobalt(II) oxide COMO:0000373 nickel(II) oxide. NiO measure.ontology COMO:0000374 nickel(II) oxide COMO:0000374 High. measure.ontology COMO:0000375 High COMO:0000375 Low. measure.ontology COMO:0000376 Low COMO:0000376 resistivity unit. measure.ontology COMO:0000377 resistivity unit COMO:0000377 salinity unit. measure.ontology COMO:0000378 salinity unit COMO:0000378 log ratio unit. measure.ontology COMO:0000379 log ratio unit COMO:0000379 confidence units are a dimensionless unit, with range from 0 to 1 measure.ontology COMO:0000380 confidence unit COMO:0000380 Pick a molecule from a list of chemicals (preferred). oterm_ref true true true true ORef: CHEBI:24431 measure.ontology COMO:0000381 Molecule from list COMO:0000381 Give the name of a molecule in PubChem (use list instead if possible). string true true true true measure.ontology COMO:0000382 PubChem Molecule Name COMO:0000382 Describe a molecule using its molecular formula (use list instead if possible). string true true true true measure.ontology COMO:0000383 Molecular Formula COMO:0000383 Describe a molecule using its InChIKey (use list instead if possible). string true true true true measure.ontology COMO:0000384 InChIKey COMO:0000384 Ionization mode used in a mass spec experiment. oterm_ref true true true true true ORef: COMO:0000385 measure.ontology COMO:0000385 Ionization Mode COMO:0000385 Positive Polarity (ionization mode for MS experiment). measure.ontology COMO:0000386 Positive Polarity COMO:0000386 Negative Polarity (ionization mode for MS experiment). measure.ontology COMO:0000387 Negative Polarity COMO:0000387 Usability. boolean true true true true true measure.ontology COMO:0000388 Usability COMO:0000388 Reference Compound. measure.ontology COMO:0000389 Reference Compound COMO:0000389 Ion Intensity. float true true true true true COMO:0000471 UO:0000313 measure.ontology COMO:0000390 Ion Intensity COMO:0000390 Absolute amount of a substance, such as an element. See also: concentration. float true true true true true UO:0000006 measure.ontology COMO:0000391 Amount COMO:0000391 1,2-dipalmitoyl-rac-glycero-3-phosphoethanolamine. measure.ontology COMO:0000392 1,2-dipalmitoyl-rac-glycero-3-phosphoethanolamine COMO:0000392 objects per grid window. measure.ontology COMO:0000393 objects per grid window COMO:0000393 Barcode. string true true true true true measure.ontology COMO:0000394 Barcode COMO:0000394 Overexpression Library. measure.ontology COMO:0000395 Overexpression Library COMO:0000395 Dub-Seq Library. measure.ontology COMO:0000396 Dub-Seq Library COMO:0000396 Genomic Region. string true true true true true measure.ontology COMO:0000398 Genomic Region COMO:0000398 Numerator. string true true true measure.ontology COMO:0000401 Numerator COMO:0000401 Denominator. string true true true measure.ontology COMO:0000402 Denominator COMO:0000402 Isotope Ratio. float true true true true true UO:0010006 UO:0000187 UO:0000166 UO:0000187 measure.ontology COMO:0000403 Isotope Ratio COMO:0000403 Geologic Zone. oterm_ref true true true true true ORef: COMO:0000404 measure.ontology COMO:0000404 Geologic Zone COMO:0000404 Vadose Zone. Unsaturated Zone measure.ontology COMO:0000405 Vadose Zone COMO:0000405 Variably Saturated Zone. measure.ontology COMO:0000406 Variably Saturated Zone COMO:0000406 Saturated Zone. Phreatic Zone measure.ontology COMO:0000407 Saturated Zone COMO:0000407 Isotope. oterm_ref true true true true true ORef: CHEBI:24431 measure.ontology COMO:0000408 Isotope COMO:0000408 Microplate Name. string true true true true true measure.ontology COMO:0000409 Microplate Name COMO:0000409 Microplate Well Name. string true true true true true measure.ontology COMO:0000410 Microplate Well Name COMO:0000410 Microplate. string true true measure.ontology COMO:0000411 Microplate COMO:0000411 Microplate Well. string true true measure.ontology COMO:0000412 Microplate Well COMO:0000412 fold concentration. measure.ontology COMO:0000413 fold concentration COMO:0000413 adenine hydrochloride hydrate. measure.ontology COMO:0000414 adenine hydrochloride hydrate COMO:0000414 Aphotic. boolean true true true true true measure.ontology COMO:0000415 Aphotic COMO:0000415 Growth Stage. oterm_ref true true true ORef: COMO:0000416 measure.ontology COMO:0000416 Growth Stage COMO:0000416 Preincubation. measure.ontology COMO:0000417 Preincubation COMO:0000417 Inoculation. measure.ontology COMO:0000418 Inoculation COMO:0000418 Lag Phase. measure.ontology COMO:0000419 Lag Phase COMO:0000419 Exponential Phase. measure.ontology COMO:0000420 Exponential Phase COMO:0000420 Stationary Phase. measure.ontology COMO:0000421 Stationary Phase COMO:0000421 humic acid. measure.ontology COMO:0000422 humic acid COMO:0000422 fulvic acid. measure.ontology COMO:0000423 fulvic acid COMO:0000423 anthrahydroxyquinone-2,6-disulfonate. AHDS measure.ontology COMO:0000424 anthrahydroxyquinone-2,6-disulfonate COMO:0000424 citric-disodium phosphate. measure.ontology COMO:0000425 citric-disodium phosphate COMO:0000425 natural organic matter. NOM measure.ontology COMO:0000426 natural organic matter COMO:0000426 Minimal Media. boolean true true true measure.ontology COMO:0000427 Minimal Media COMO:0000427 CAS Registry Number. string true true true true measure.ontology COMO:0000428 CAS Registry Number COMO:0000428 Sequence Identity. float true true true true true measure.ontology COMO:0000429 Sequence Identity COMO:0000429 Sequence Similarity. float true true true true true measure.ontology COMO:0000430 Sequence Similarity COMO:0000430 Relative Evolutionary Divergence. float true true true true true UO:0000186 UO:0000186 measure.ontology COMO:0000431 Relative Evolutionary Divergence COMO:0000431 Publication. string true true true true measure.ontology COMO:0000432 Publication COMO:0000432 PubMed ID. int true true true true UO:0000186 UO:0000186 PMID measure.ontology COMO:0000433 PubMed ID COMO:0000433 PubMed Central ID. string true true true true PMCID measure.ontology COMO:0000434 PubMed Central ID COMO:0000434 Database. string true true true measure.ontology COMO:0000435 Database COMO:0000435 Obsolete. boolean true true true true true measure.ontology COMO:0000436 Obsolete COMO:0000436 Redox. measure.ontology COMO:0000437 Redox COMO:0000437 Reduction. measure.ontology COMO:0000438 Reduction COMO:0000438 Oxidation. measure.ontology COMO:0000439 Oxidation COMO:0000439 Height. float true true true true true UO:0000001 measure.ontology COMO:0000440 Height COMO:0000440 Length. float true true true true true UO:0000001 measure.ontology COMO:0000441 Length COMO:0000441 Width. float true true true true true UO:0000001 measure.ontology COMO:0000442 Width COMO:0000442 Cell Morphology. measure.ontology COMO:0000443 Cell Morphology COMO:0000443 Cell Structure. measure.ontology COMO:0000444 Cell Structure COMO:0000444 Cellular Appendage. measure.ontology COMO:0000445 Cellular Appendage COMO:0000445 Flagella. measure.ontology COMO:0000446 Flagella COMO:0000446 Flagellar Arrangement. oterm_ref true true true true true ORef: COMO:0000447 measure.ontology COMO:0000447 Flagellar Arrangement COMO:0000447 A single flagellum extending from one end of the cell. measure.ontology COMO:0000448 Monotrichous COMO:0000448 Single or multiple flagella extending from both ends of the cell. measure.ontology COMO:0000449 Amphitrichous COMO:0000449 Tuft of flagella extending from one end or both ends of the cell. measure.ontology COMO:0000450 Lophotrichous COMO:0000450 Multiple flagella distributed over the entire cell. measure.ontology COMO:0000451 Peritrichous COMO:0000451 Vessicle. measure.ontology COMO:0000452 Vessicle COMO:0000452 S-layer. measure.ontology COMO:0000453 S-layer COMO:0000453 Cell Membrane. measure.ontology COMO:0000454 Cell Membrane COMO:0000454 Cell Shape. oterm_ref true true true true true ORef: COMO:0000455 measure.ontology COMO:0000455 Cell Shape COMO:0000455 Rod. measure.ontology COMO:0000456 Rod COMO:0000456 Rod-vibrio. measure.ontology COMO:0000457 Rod-vibrio COMO:0000457 Oval. measure.ontology COMO:0000458 Oval COMO:0000458 Irregular Oval. measure.ontology COMO:0000459 Irregular Oval COMO:0000459 Spherical. measure.ontology COMO:0000460 Spherical COMO:0000460 Pleomorphic. measure.ontology COMO:0000461 Pleomorphic COMO:0000461 Observed. boolean true true true true true measure.ontology COMO:0000462 Observed COMO:0000462 Genome Quality. measure.ontology COMO:0000463 Genome Quality COMO:0000463 Genome Completeness. float true true true true true UO:0000187 UO:0000187 measure.ontology COMO:0000464 Genome Completeness COMO:0000464 Genome Contamination. float true true true true true UO:0000187 UO:0000187 measure.ontology COMO:0000465 Genome Contamination COMO:0000465 Genome N50. int true true true true true UO:0000189 UO:0000189 measure.ontology COMO:0000466 Genome N50 COMO:0000466 Read Coverage. float true true true true true UO:0000189 UO:0000189 measure.ontology COMO:0000467 Read Coverage COMO:0000467 Index. int true true true true true UO:0000189 UO:0000189 measure.ontology COMO:0000468 Index COMO:0000468 Internal Standard. string true true true true true measure.ontology COMO:0000469 Internal Standard COMO:0000469 Exact Mass. float true true true true true UO:0000221 measure.ontology COMO:0000470 Exact Mass COMO:0000470 relative ion intensity unit. measure.ontology COMO:0000471 relative ion intensity unit COMO:0000471 Microbial Strain ID. object_ref true true true true Ref: DA:0000028.Microbial_Strain.name Isolate ID measure.ontology COMO:0000472 Microbial Strain ID COMO:0000472 ASV Name. string true true true measure.ontology COMO:0000473 ASV Name COMO:0000473 ASV ID. object_ref true true true true Ref: DA:0000029.ASV.Name measure.ontology COMO:0000474 ASV ID COMO:0000474 Plant Transformant. string true true measure.ontology COMO:0000475 Plant Transformant COMO:0000475 Plant Transformant Name. string true true true true measure.ontology COMO:0000476 Plant Transformant Name COMO:0000476 Plant Transformant ID. object_ref true true true true Ref: DA:0000027.Plant_Transformant.name measure.ontology COMO:0000477 Plant Transformant ID COMO:0000477 DNA Construct. string true true measure.ontology COMO:0000478 DNA Construct COMO:0000478 DNA Construct Name. string true true true true true measure.ontology COMO:0000479 DNA Construct Name COMO:0000479 Jukes-Cantor Distance. float true true true true true COMO:0000481 measure.ontology COMO:0000480 Jukes-Cantor Distance COMO:0000480 substitutions per site. measure.ontology COMO:0000481 substitutions per site COMO:0000481 Tissue. string true true true measure.ontology COMO:0000482 Tissue COMO:0000482 Genotype. string true true true measure.ontology COMO:0000483 Genotype COMO:0000483 Collected. boolean true true true true true measure.ontology COMO:0000484 Collected COMO:0000484 UO:0000000 UO:0000051 UO:0000060 UO:0000109 UO:0000186 UO:0000189 UO:0000190 UO:0000262 ONTO-PERL 1.45 27:08:2018 15:13 1.4 jmc data_type