code of the associated laboratory code of the associated locality code of the associated health unit code of the nearest health center code of the nearest health center code of the associated treatment center where the consultation took place infection place of the patient residence place of the patient presumed locality of infection locality of residence of the patient code of the city using IBGE presumed city of infection using IBGE code of the city of the notification using IGBE city of residence of the patient using IBGE identifier of the patient type of spatial projection used habitation area of the patient code of the health center indicator if the diagnosis is active or passive age of the patient (in years) informal code of habitation area. presence of other phenomenon type of locality (square, neighbourhood,...) type of the unity (public, NGO) code of the treatment code of the associated laboratory code of the associated locality code of the unit code of the agent who made the notification identifier of the notification socio-professional category of the patient unique identifier for the habitation area birth city of the patient date of the consultation date of the consultation date of the beginning of the observation date of the end of the observation presence of dengue next step planned for the patient (medical surveillance, going back home,...) result of the diagnosis other diagnosis observed, using ICD-10 main diagnosis observed, using ICD-10 presence of diarrhea last date of actualisation date of end of activity of the unit date the form was digitalized date the form was sent on date of the examination date of installation of the unit or laboratory birth date of the patient date of the notification date of registration presumed date of start of the symptoms date of the start of the treatment duration of the observation code of the associated treatment delivered treatment (old format) type of examination code of the agent who did the examination indicator for treatment for Falciparum in the last 40 days region code presence of fever and outbreak presence of respiratory fever unique municipality identifier pregnancy indicator (old format) pregnancy indicator code of other hemoparasites unique identifier center where the consultation took place unique consultation identifier indicator for verification of treatment age of the patient code of the associated laboratory latitude of the place name of the area longitude of the place macro region of the city micro region of the city means of entry (walking, cab,...) means of exit (walking, cab,...) code of the city using IBGE name of the place indicator of if this is a new case of malaria studies qualifications studies qualifications (old format, based on number of years) name of the laboratory name of the locality name of the city name of the unit name of the health center number of inhabitants number of buildings identifier of the patient country of infection of the patient using IBGE country of residence of the patient using IBGE presence of other malaria (not falciparum) presence of falciparum malaria age of the patient sex of the patient Country of birth of the patient, using ISO 3166-1-alpha-2 quantity of parasites using an ordinal qualitative scale quantity of parasites per mm3 Color of the skin of the patient region of the city using IBGE result of the examination (plasmodial species) notification week (from sunday to saturday) presence of serology dengue sex of the patient, using ISO 5218 sex of the patient presence or absence of symptoms status (active or inactive) diagnosis type (active, passive or LVC) presence of cough type of consultation state of the city state of the city using IBGE presumed state of infection using IBGE code of the state of the notification using IGBE state of residence of the patient using IBGE indicator for treatment for Vivax in the last 60 days longitude of the area latitude of the area type of zone (rural or urban) type of projection harmonized area french guyana health center french guyana medical consultation brazilian treatment harmonized health center brazilian laboratory brazilian locality harmonized medical consultation french guyana medical surveillance brazilian city brazilian medical consultation french guyana patient brazilian health unit french guyana residential area brazilian data for active_diagnosis is stored in an integer that is converted to a boolean create a sequential id (1,2,3,...) uses palufalci, diagnosticprincipal and autrediagnostic to fill diagnosis_result by searching ICD10 codes and picking the most accurate description for those codes: IF diagnosis contains B50 or palufalci is true then IF diagnosis contains B51 or B52 or B53 then initiate to mixed with P. falciparum else initiate to falciparum else if diagnosis does not contain B54 then initiate to non falciparum else initiate to unknown initiate active_diagnosis to false takes a planar UTM 22N projection and changes it to the spheroidal projection WGS 84 brazilian data for new_attack is stored in an integer that is converted to a boolean initiate new_attack to true if the patient has had a case of P. falciparum in the last 60 days or of P. vivax in the last 90 days set paluautre to true if the diagnostics fields contain B51, B52 or B53 set palufalci to true if the diagnostics fields contain B50 brazilian data for patient_sex is stored in an integer that is converted to a boolean to fit ISO 5218 merges several spaces into unique spaces concatenate the fields cd_local and mun_ibge by adding a / between them concatenate the fields cd_unida and mun_ibge by adding a / between them concatenate the fields cod_noti, dt_notif and cod_unin by adding a _ between them create the source field and fill it for brazilian data create the source field and fill it for guiana data calculate the patient age using id_pacia and id_dimea: uses id_pacia if it's in year, else divide it by 12 or 365 if it's in months or days source of the data