Classes of named entity and some relationships that TM can find between them. The main developer of NERO is Prof. Robert Stevens, the University of Manchester the trust one has in the automated annotation from a text mining point of view ner:AbstractEntity Abstract text entity ner:AminoAcidEntity A kind of small molecules, which is one of the 20 naturally occuring amino acids, their residues within proteins or peptides or modifications thereof Amino acid named entity ner:AminoAcidOrPeptideEntity Amino acid or peptide named entity ner:AnatomicalPartEntity Anatomical part named entity ner:AnnotationInText A portion of text with something said about it. Annotation in text ner:AtomEntity Atom named entity ner:CellEntity Cell named entity ner:CellularComponentEntity Cellular component named entity ner:ChemicalEntity Chemical named entity ner:CitationEntity Citation named entity ner:DiseaseEntity Disease named entity ner:DrugEntity Actually a role played by a chemical in a certain context. Drugs are usually small molecules but that's not always so.... Drug named entity Drug text entity ner:DurationEntity Duration named entity ner:EnvironmentalFactorEntity Environmental factor named entity ner:ExperimentalFactorEntity Experimental factor named entity ner:FacilityEntity facility named entity ner:FoodEntity Food or drink that is not a simple substance (e.g., salt, water) or an organism name (e.g., wheat, pig, rice). Properly, this should be a role of a substance. Food named entity ner:GeneEntity Gene named entity ner:GeneOrProteinEntity Gene or protein named entity 2 ner:GeneOrProteinGroupEntity Gene or protein group named entity ner:GeographicalLocationEntity Accommodates sites of all sorts of things - valleys, hills, countries, regions, oceans, poles, long and lat Geographical location named entity ner:Information_content_entity A generically dependent continuant that is about some thing. IAO: http://purl.obolibrary.org/obo/IAO_0000030 ner:IntellectualProductEntity A theory, idea, concept, hypothesis that is not linked in the text to a specific publication. For example, a patent includes intellectual product, but foremost it is a publication. Intellectual product named entity ner:IonEntity Ion named entity ner:JournalEntity Journal named entity ner:LaboratoryExperimentalFactorEntity Laboratory experimental factor named entity ner:LanguageEntity Language named entity ner:MeasurementEntity Measurement named entity ner:MedicalDeviceEntity Medical device named entity ner:MedicalFindingEntity Medical finding named entity ner:MedicalProcedureEntity Medical procedure named entity ner:MedicalProcedureOrDeviceEntity Medical procedure or device named entity ner:MentalProcessentity Memory, emotions, thoughts, learning, cognition. Mental process named entity ner:MolecularProcessEntity Molecular process named entity ner:MoleculeEntity why is this part of some protein? Molecule named entity ner:NamedEntity Named entity 2 ner:NamedEntityGroupEntity Group of named entity text entity ner:NonproteinOrNucleicAcidChemicalEntity All chemicals that are not nucleic acid or protein -- isotopes, ions, etc. Non ucleic acid or protein molecule named entity ner:NucleicAcidEntity Nucleic acid named entity ner:OrganismEntity Organism named entity ner:PartOfProteinEntity An oligopeptitide that is part of or maps to some protein. A peptide in its own right is a protein. Part of protein named entity ner:PersonEntity A proper name of an individual person. Person named entity ner:PersonGroupEntity A proper name of an association of individuals, including companies, clubs, political organizations, government branches, or other entities, as well as groups by character, of people that share certain characteristics such as profession, gender, nationality or diseases.. Group of person named entity ner:ProcessEntity Process named entity ner:PronounEntity Pronoun text entity ner:ProperNamedGeographicalLocationEntity A proper name of a geographical location. Proper name for a geographical named entity ner:ProteinEntity Protein named entity ner:PublicationOrCitationEntity ner:PublishedSourceOfInformationEntity A reference to a paper (citation), an article, manuscript, video, book, diary, note, message, report, letter, journal, etc. Published source of information named entity ner:QuantityEntity Quantity named entity ner:QuantityOrMeasurementEntity Quantity or measurement named entity 2 ner:RelationshipEntity Relationship text entity ner:ResearchActivityEntity Research activity named entity ner:SmallMoleculeEntity Small molecule named entity ner:TextEntity A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc. IAO Textual entity ner:TimePointEntity time point named entity ner:UnitEntity Unit named entity ner:UnproperNamedGeographicalLocationEntity Unproper named geographical location named entity ner:biologicalProcessEntity Biological process named entity ner:bodyPartEntity Body part named entity ner:chromosomeEntity Chromosome named entity ner:timeEntity A period or time point. A calendar time description that includes the year, decade or century. Other phrases that describe a duration in any time-related unit (seconds, hours, millennia) belong with quantity-or-measure-in-units category. Time named entity ner:tissueEntity tissue named entity The main developer of NERO is Prof. Robert Stevens, the University of Manchester Classes of named entity and some relationships that TM can find between them. The main developer of NERO is Prof. Robert Stevens, the University of Manchester