OBO-Edit 2.3.1 13:04:2021 14:52 microbial_phenotype 1.2 siegele select is_a closure definition expand assertion to term replaced by Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: ?X and (RO_0002162 some ?Y) Class: ?X DisjointWith: RO_0002162 some ?Y RO:0002161 external never_in_taxon true true never_in_taxon never_in_taxon RO:0002604 quality is_opposite_of true true is_opposite_of is opposite_of BRAND NAME Involved_in FORMULA INN IUPAC NAME InChI InChIKey SMILES SO feature annotation Abnormal/normal slim Absent/present slim Attribute slim cell_quality Disposition slim Grouping classes that can be excluded Aspergillus GO slim Candida GO slim Generic GO slim GOA and proteome slim Metagenomics GO slim PIR GO slim Plant GO slim Fission yeast GO slim Viral GO slim Yeast GO slim Prokaryotic GO subset Human phenotype slim Catalytic activity terms in need of attention Pathology slim Term not to be used for direct annotation Term not to be used for direct manual annotation Relational slim: types of quality that require an additional entity in order to exist Scalar slim Systematic synonym Value slim Viral overhaul terms subset_property synonym_type_property consider has_alternative_id has_broad_synonym database_cross_reference has_exact_synonym has_narrow_synonym has_obo_format_version has_obo_namespace has_related_synonym has_scope in_subset shorthand X part_of Y if X is a subregion of Y. Used in FYPO to identify phenotypes that are always observed in the context of another, usually larger-scale, phenotype. BFO:0000050 sequence part_of part_of Example: amino_acid part_of polypeptide. part_of X part_of Y if X is a subregion of Y. http://precedings.nature.com/documents/3495/version/1 Used in FYPO when a phenotype is observed after another event, usually a GO biological process, has ended, and where there isn't a suitable process to use with a during relation. BFO:0000062 microbial_phenotype preceded_by preceded_by preceded_by Used in FYPO when a phenotype is observed before another event, usually a GO biological process, begins, and where there isn't a suitable process to use with a during relation. BFO:0000063 microbial_phenotype precedes precedes precedes Used in FYPO to identify a location, usually a cellular component or cell type, within which a phenotype is observed or relevant. BFO:0000066 microbial_phenotype occurs_in occurs_in occurs in Identifies a process, cell cycle stage or life stage during which a phenotype is observed or relevant. GOREL:0000002 microbial_phenotype during during during Identifies a process, cell cycle stage or life stage during which a phenotype that affects a continuant, such as a cellular component or the level of a substance, is observed or relevant. GOREL:0000032 microbial_phenotype exists_during exists_during exists_during This relation is not constrained with respect to whether the place where an event occurs completely surrounds, or is adjacent to, the location indicated. Example: chromatin silencing at centromere unfolds_around centromere : Repression of transcription of centromeric DNA by the formation of heterochromatin. Used in FYPO to identify a position where a phenotype is observed or relevant, usually a DNA or RNA sequence feature specified by a SO ID. GOREL:0000501 microbial_phenotype occurs_at occurs_at occurs_at RO:0000056 external participates_in participates_in participates_in RO:0000087 chebi_ontology has_role has_role has role Used in FYPO to indicate where a physical quality phenotype is observed. RO:0001025 microbial_phenotype located_in located_in located in Identifies a process, cell cycle stage or life stage during which a phenotype that affects an occurrent, i.e. a biological process or molecular function, is observed or relevant. GOREL:0000001 RO:0002092 external happens_during happens_during happens_during RO:0002093 external ends_during ends_during ends_during RO:0002213 external positively_regulates positively_regulates positively regulates p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. Def comes from gorel file. Used in FYPO where one phenotype (p) always results in an additional phenotype (c) as a consequence. There may be other ways to get phenotype (c). RO:0002234 microbial_phenotype has_output has_output has_output p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. GOC:curators Used in FYPO as described in MP/HP logical definition best practices for processes, and in an analogous manner for cell/cell part structure; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps). RO:0002314 microbial_phenotype inheres_in_part_of inheres_in_part_of inheres in part of Inverse of has_output. Relation between a structure and a process that forms it, or between one process and a preceding process; A output_of B used where B has_output A isn't always true. Implies that process B is the only way to get output. Used in FYPO where one phenotype (c) always results when another phenotype (p) is present. Phenotype (p) may have other consequences in addition to phenotype (c). RO:0002353 formation results from microbial_phenotype output_of output_of output_of formation results from PomBase:mah A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap. sequence adjacent_to adjacent_to A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap. PMID:20226267 SO:ke The inverse of contained_by. kareneilbeck 2010-10-14T01:32:15Z sequence contains Example: pre_miRNA contains miRNA_loop. contains The inverse of contained_by. PMID:20226267 quality correlates_with correlates_with P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P. Marcus 2014-02-13T01:39:46Z microbial_phenotype decreased_relative_to decreased_relative_to true P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P. ECO:MCC sequence derives_from derives_from q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality different_in_magnitude_relative_to different_in_magnitude_relative_to q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. PATOC:CJM q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. cjm 2009-08-26T02:50:08Z quality directly_associated_with Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. Association is weaker than correlation or proportionality. These relations may be later added to PATO. directly_associated_with q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. PATOC:cjm Wikipedia:Association_(statistics) quality has_dividend_entity has_dividend_entity quality has_dividend_quality has_dividend_quality quality has_divisor_entity has_divisor_entity quality has_divisor_quality has_divisor_quality chebi_ontology has_functional_parent has functional parent sequence has_origin has_origin chebi_ontology has_parent_hydride has parent hydride quality has_ratio_quality has_ratio_quality P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P. Marcus 2014-02-13T01:41:08Z microbial_phenotype increased_relative_to increased_relative_to true P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P. ECO:MCC q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. cjm 2009-08-26T02:50:24Z quality inversely_associated_with Association is weaker than correlation or proportionality. These relations may be later added to PATO. inversely_associated_with q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. PATOC:cjm Wikipedia:Association_(statistics) chebi_ontology is_conjugate_acid_of true is conjugate acid of chebi_ontology is_conjugate_base_of true is conjugate base of chebi_ontology is_enantiomer_of true is enantiomer of pato.ontology is_magnitude_of is_magnitude_of pato.ontology is_measurement_of is_measurement_of chebi_ontology is_substituent_group_from is substituent group from chebi_ontology is_tautomer_of true is tautomer of pato.ontology is_unit_of is_unit_of sequence member_of A subtype of part_of. Inverse is collection_of. Winston, M, Chaffin, R, Herrmann: A taxonomy of part-whole relations. Cognitive Science 1987, 11:417-444. member_of A relationship between a pseudogenic feature and its functional ancestor. sequence non_functional_homolog_of non_functional_homolog_of A relationship between a pseudogenic feature and its functional ancestor. SO:ke X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y. kareneilbeck 2010-10-14T01:33:15Z sequence overlaps Example: coding_exon overlaps CDS. overlaps X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y. PMID:20226267 Used in FYPO as described in PATO best practices; placeholder relation to indicate normality/abnormality. microbial_phenotype qualifier qualifier quality realized_by realized_by q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality similar_in_magnitude_relative_to similar_in_magnitude_relative_to q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. PATOC:CJM monadic_form_of quality singly_occurring_form_of PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. singly_occurring_form_of X is transcribed_from Y if X is synthesized from template Y. kareneilbeck 2009-08-19T12:05:39Z sequence transcribed_from Example: primary_transcript transcribed_from gene. transcribed_from X is transcribed_from Y if X is synthesized from template Y. http://precedings.nature.com/documents/3495/version/1 Inverse of transcribed_from. kareneilbeck 2009-08-19T12:08:24Z sequence transcribed_to Example: gene transcribed_to primary_transcript. transcribed_to Inverse of transcribed_from. http://precedings.nature.com/documents/3495/version/1 A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A. sequence variant_of Added to SO during the immunology workshop, June 2007. This relationship was approved by Barry Smith. variant_of A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A. SO:immuno_workshop A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. chebi_ontology CHEBI:24431 chemical entity CHEBI:24431 A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. CHEBI:Team A role played by the molecular entity or part thereof within a biological context. chebi_ontology CHEBI:24432 biological role CHEBI:24432 A role played by the molecular entity or part thereof within a biological context. CHEBI:Team Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests. Wikipedia:Pesticide chebi_ontology CHEBI:25944 pesticide CHEBI:25944 Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests. CHEBI:Team Intended use of the molecular entity or part thereof by humans. chebi_ontology CHEBI:33232 application CHEBI:33232 Intended use of the molecular entity or part thereof by humans. CHEBI:Team A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans. chebi_ontology antimicrobial microbiocides CHEBI:33281 antimicrobial agent CHEBI:33281 A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans. CHEBI:Team A role is a particular behaviour which a material entity may exhibit. chebi_ontology CHEBI:50906 role CHEBI:50906 A role is a particular behaviour which a material entity may exhibit. CHEBI:Team The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms. GO:0019952 GO:0050876 Wikipedia:Reproduction reproductive physiological process biological_process GO:0000003 reproduction GO:0000003 The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms. GOC:go_curators GOC:isa_complete GOC:jl ISBN:0198506732 Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella. ciliary/flagellar motility biological_process ciliary or bacterial-type flagellar motility GO:0001539 Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC. cilium or flagellum-dependent cell motility GO:0001539 Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella. GOC:cilia GOC:hjd GOC:krc The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. GO:0008372 NIF_Subcellular:sao1337158144 cellular component cellular_component subcellular entity GO:0005575 Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. cellular_component GO:0005575 The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. GOC:go_curators NIF_Subcellular:sao-1337158144 subcellular entity NIF_Subcellular:nlx_subcell_100315 The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. NIF_Subcellular:sao1813327414 Wikipedia:Cell_(biology) cellular_component GO:0005623 cell GO:0005623 The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. GOC:go_curators Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. GO:0055134 cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism nucleobase, nucleoside, nucleotide and nucleic acid metabolism biological_process nucleobase, nucleoside and nucleotide metabolic process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process GO:0006139 nucleobase-containing compound metabolic process GO:0006139 Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. GOC:ai nucleobase, nucleoside, nucleotide and nucleic acid metabolic process GOC:dph GOC:tb Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. GO:0055132 DNA metabolism cellular DNA metabolism biological_process GO:0006259 DNA metabolic process GO:0006259 Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. ISBN:0198506732 The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. GO:0055133 Reactome:REACT_100559 Reactome:REACT_101280 Reactome:REACT_101497 Reactome:REACT_102679 Reactome:REACT_103614 Reactome:REACT_104547 Reactome:REACT_105292 Reactome:REACT_105467 Reactome:REACT_105835 Reactome:REACT_106018 Reactome:REACT_106104 Reactome:REACT_106382 Reactome:REACT_106434 Reactome:REACT_106732 Reactome:REACT_107075 Reactome:REACT_107423 Reactome:REACT_108461 Reactome:REACT_108634 Reactome:REACT_108739 Reactome:REACT_108768 Reactome:REACT_108929 Reactome:REACT_109137 Reactome:REACT_112472 Reactome:REACT_113703 Reactome:REACT_29423 Reactome:REACT_29444 Reactome:REACT_29691 Reactome:REACT_29764 Reactome:REACT_30149 Reactome:REACT_31024 Reactome:REACT_31919 Reactome:REACT_32546 Reactome:REACT_32932 Reactome:REACT_33572 Reactome:REACT_33874 Reactome:REACT_50018 Reactome:REACT_53588 Reactome:REACT_6729 Reactome:REACT_6738 Reactome:REACT_6750 Reactome:REACT_6769 Reactome:REACT_6798 Reactome:REACT_6869 Reactome:REACT_6936 Reactome:REACT_6939 Reactome:REACT_77532 Reactome:REACT_79188 Reactome:REACT_79450 Reactome:REACT_80432 Reactome:REACT_80571 Reactome:REACT_80896 Reactome:REACT_80988 Reactome:REACT_81803 Reactome:REACT_83095 Reactome:REACT_84829 Reactome:REACT_85561 Reactome:REACT_86410 Reactome:REACT_86739 Reactome:REACT_87233 Reactome:REACT_87449 Reactome:REACT_87590 Reactome:REACT_88085 Reactome:REACT_88384 Reactome:REACT_88529 Reactome:REACT_89355 Reactome:REACT_89439 Reactome:REACT_89725 Reactome:REACT_90512 Reactome:REACT_90809 Reactome:REACT_90838 Reactome:REACT_91184 Reactome:REACT_91302 Reactome:REACT_92527 Reactome:REACT_92644 Reactome:REACT_92706 Reactome:REACT_94983 Reactome:REACT_95253 Reactome:REACT_95329 Reactome:REACT_96115 Reactome:REACT_96804 Reactome:REACT_96998 Reactome:REACT_97204 Reactome:REACT_97726 Reactome:REACT_99948 Wikipedia:DNA_replication biological_process GO:0006260 See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'. DNA replication GO:0006260 Reactome:REACT_90809 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Danio rerio Reactome:REACT_90838 Recruitment of Rad17-RFC complex to DNA, Taeniopygia guttata Reactome:REACT_91184 Recruitment and activation of Chk1, Danio rerio Reactome:REACT_91302 Activation of ATR in response to replication stress, Canis familiaris Reactome:REACT_92527 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Mus musculus Reactome:REACT_92644 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Xenopus tropicalis Reactome:REACT_92706 Stalling of DNA replication fork and RPA binding, Danio rerio Reactome:REACT_94983 Stalling of DNA replication fork and RPA binding, Xenopus tropicalis Reactome:REACT_95253 Activation of ATR in response to replication stress, Taeniopygia guttata Reactome:REACT_95329 Activation of claspin, Taeniopygia guttata Reactome:REACT_96115 Binding of ATR-ATRIP to the RPA-ssDNA complex, Mus musculus Reactome:REACT_96804 Recruitment and activation of Chk1, Mus musculus Reactome:REACT_96998 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Bos taurus Reactome:REACT_97204 Loading of claspin onto DNA during replication origin firing, Gallus gallus Reactome:REACT_97726 Activation of ATR in response to replication stress, Caenorhabditis elegans Reactome:REACT_99948 Loading of claspin onto DNA during replication origin firing, Xenopus tropicalis The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. GOC:mah Reactome:REACT_100559 Activation of ATR in response to replication stress, Mus musculus Reactome:REACT_101280 Activation of claspin, Xenopus tropicalis Reactome:REACT_101497 Activation of claspin, Bos taurus Reactome:REACT_102679 Activation of ATR in response to replication stress, Gallus gallus Reactome:REACT_103614 Stalling of DNA replication fork and RPA binding, Taeniopygia guttata Reactome:REACT_104547 Recruitment and activation of Chk1, Gallus gallus Reactome:REACT_105292 Activation of ATR in response to replication stress, Xenopus tropicalis Reactome:REACT_105467 Loading of claspin onto DNA during replication origin firing, Danio rerio Reactome:REACT_105835 Stalling of DNA replication fork and RPA binding, Gallus gallus Reactome:REACT_106018 Recruitment of Rad17-RFC complex to DNA, Gallus gallus Reactome:REACT_106104 Binding of ATR-ATRIP to the RPA-ssDNA complex, Bos taurus Reactome:REACT_106382 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Drosophila melanogaster Reactome:REACT_106434 Activation of claspin, Canis familiaris Reactome:REACT_106732 Recruitment and activation of Chk1, Canis familiaris Reactome:REACT_107075 Activation of ATR in response to replication stress, Danio rerio Reactome:REACT_107423 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Caenorhabditis elegans Reactome:REACT_108461 Recruitment and activation of Chk1, Bos taurus Reactome:REACT_108634 Loading of claspin onto DNA during replication origin firing, Mus musculus Reactome:REACT_108739 Binding of ATR-ATRIP to the RPA-ssDNA complex, Xenopus tropicalis Reactome:REACT_108768 Activation of ATR in response to replication stress, Bos taurus Reactome:REACT_108929 Activation of ATR in response to replication stress, Drosophila melanogaster Reactome:REACT_109137 Stalling of DNA replication fork and RPA binding, Rattus norvegicus Reactome:REACT_112472 Activation of ATR in response to replication stress, Saccharomyces cerevisiae Reactome:REACT_113703 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Gallus gallus Reactome:REACT_29423 Activation of ATR in response to replication stress, Schizosaccharomyces pombe Reactome:REACT_29444 Binding of ATR-ATRIP to the RPA-ssDNA complex, Taeniopygia guttata Reactome:REACT_29691 Activation of ATR in response to replication stress, Rattus norvegicus Reactome:REACT_29764 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Taeniopygia guttata Reactome:REACT_30149 Activation of claspin, Rattus norvegicus Reactome:REACT_31024 Recruitment of Rad17-RFC complex to DNA, Xenopus tropicalis Reactome:REACT_31919 Loading of claspin onto DNA during replication origin firing, Rattus norvegicus Reactome:REACT_32546 Recruitment of Rad17-RFC complex to DNA, Mus musculus Reactome:REACT_32932 Recruitment and activation of Chk1, Taeniopygia guttata Reactome:REACT_33572 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Dictyostelium discoideum Reactome:REACT_33874 Recruitment and activation of Chk1, Xenopus tropicalis Reactome:REACT_50018 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Rattus norvegicus Reactome:REACT_53588 Loading of claspin onto DNA during replication origin firing, Canis familiaris Reactome:REACT_6729 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Homo sapiens Reactome:REACT_6738 Loading of claspin onto DNA during replication origin firing, Homo sapiens Reactome:REACT_6750 Activation of claspin, Homo sapiens Reactome:REACT_6769 Activation of ATR in response to replication stress, Homo sapiens Reactome:REACT_6798 Recruitment of Rad17-RFC complex to DNA, Homo sapiens Reactome:REACT_6869 Recruitment and activation of Chk1, Homo sapiens Reactome:REACT_6936 Stalling of DNA replication fork and RPA binding, Homo sapiens Reactome:REACT_6939 Binding of ATR-ATRIP to the RPA-ssDNA complex, Homo sapiens Reactome:REACT_77532 Stalling of DNA replication fork and RPA binding, Canis familiaris Reactome:REACT_79188 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Canis familiaris Reactome:REACT_79450 Activation of ATR in response to replication stress, Dictyostelium discoideum Reactome:REACT_80432 Loading of claspin onto DNA during replication origin firing, Taeniopygia guttata Reactome:REACT_80571 Activation of claspin, Mus musculus Reactome:REACT_80896 Recruitment and activation of Chk1, Sus scrofa Reactome:REACT_80988 Loading of claspin onto DNA during replication origin firing, Bos taurus Reactome:REACT_81803 Recruitment of Rad17-RFC complex to DNA, Canis familiaris Reactome:REACT_83095 Recruitment of Rad17-RFC complex to DNA, Danio rerio Reactome:REACT_84829 Binding of ATR-ATRIP to the RPA-ssDNA complex, Danio rerio Reactome:REACT_85561 Binding of ATR-ATRIP to the RPA-ssDNA complex, Rattus norvegicus Reactome:REACT_86410 Stalling of DNA replication fork and RPA binding, Mus musculus Reactome:REACT_86739 Recruitment and activation of Chk1, Rattus norvegicus Reactome:REACT_87233 Binding of ATR-ATRIP to the RPA-ssDNA complex, Canis familiaris Reactome:REACT_87449 Recruitment of Rad17-RFC complex to DNA, Rattus norvegicus Reactome:REACT_87590 Recruitment of Rad17-RFC complex to DNA, Bos taurus Reactome:REACT_88085 Binding of ATR-ATRIP to the RPA-ssDNA complex, Gallus gallus Reactome:REACT_88384 Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Schizosaccharomyces pombe Reactome:REACT_88529 Activation of claspin, Gallus gallus Reactome:REACT_89355 Activation of claspin, Danio rerio Reactome:REACT_89439 Activation of ATR in response to replication stress, Sus scrofa Reactome:REACT_89725 Loading of claspin onto DNA during replication origin firing, Drosophila melanogaster Reactome:REACT_90512 Stalling of DNA replication fork and RPA binding, Bos taurus The cellular synthesis of RNA on a template of DNA. GO:0006350 GO:0061018 GO:0061022 cellular transcription transcription Wikipedia:Transcription_(genetics) DNA-dependent transcription cellular transcription, DNA-dependent transcription, DNA-dependent biological_process transcription regulator activity GO:0006351 transcription, DNA-templated GO:0006351 The cellular synthesis of RNA on a template of DNA. GOC:jl GOC:txnOH transcription, DNA-dependent GOC:txnOH The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. GO:0006416 GO:0006453 GO:0043037 Reactome:REACT_100338 Reactome:REACT_100851 Reactome:REACT_101045 Reactome:REACT_101324 Reactome:REACT_1014 Reactome:REACT_103420 Reactome:REACT_105544 Reactome:REACT_29980 Reactome:REACT_33559 Reactome:REACT_77710 Reactome:REACT_79784 Reactome:REACT_81734 Reactome:REACT_81833 Reactome:REACT_82171 Reactome:REACT_83429 Reactome:REACT_83530 Reactome:REACT_86996 Reactome:REACT_95535 Reactome:REACT_96394 Wikipedia:Translation_(genetics) protein anabolism protein biosynthesis protein biosynthetic process protein formation protein synthesis protein translation biological_process GO:0006412 translation GO:0006412 The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. GOC:go_curators Reactome:REACT_100338 Translation, Sus scrofa Reactome:REACT_100851 Translation, Saccharomyces cerevisiae Reactome:REACT_101045 Translation, Dictyostelium discoideum Reactome:REACT_101324 Translation, Canis familiaris Reactome:REACT_1014 Translation, Homo sapiens Reactome:REACT_103420 Translation, Plasmodium falciparum Reactome:REACT_105544 Translation, Arabidopsis thaliana Reactome:REACT_29980 Translation, Bos taurus Reactome:REACT_33559 Translation, Rattus norvegicus Reactome:REACT_77710 Translation, Drosophila melanogaster Reactome:REACT_79784 Translation, Danio rerio Reactome:REACT_81734 Translation, Schizosaccharomyces pombe Reactome:REACT_81833 Translation, Caenorhabditis elegans Reactome:REACT_82171 Translation, Xenopus tropicalis Reactome:REACT_83429 Translation, Taeniopygia guttata Reactome:REACT_83530 Translation, Gallus gallus Reactome:REACT_86996 Translation, Oryza sativa Reactome:REACT_95535 Translation, Mus musculus Reactome:REACT_96394 Translation, Escherichia coli protein biosynthetic process GOC:curators The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. aromatic compound metabolism aromatic hydrocarbon metabolic process aromatic hydrocarbon metabolism biological_process GO:0006725 cellular aromatic compound metabolic process GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells. GOC:ai ISBN:0198506732 The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. nitrogen compound metabolism biological_process GO:0006807 Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node. nitrogen compound metabolic process GO:0006807 The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium. CHEBI:51143 GOC:go_curators GOC:jl ISBN:0198506732 The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore. cellular component motion biological_process cell movement GO:0006928 Note that in GO cellular components include whole cells (cell is_a cellular component). cellular component movement GO:0006928 The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore. GOC:dgh GOC:dph GOC:jl GOC:mlg cellular component motion GOC:dph GOC:jl The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). Wikipedia:Chemotaxis taxis in response to chemical stimulus biological_process GO:0006935 chemotaxis GO:0006935 The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). ISBN:0198506732 The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. Wikipedia:Chromosome_segregation chromosome division biological_process chromosome transmission GO:0007059 chromosome segregation GO:0007059 The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. GOC:jl GOC:mah GOC:mtg_cell_cycle GOC:vw Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. GO:0000004 GO:0007582 Wikipedia:Biological_process biological process physiological process biological_process GO:0008150 Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. biological_process GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. GOC:go_curators GOC:isa_complete The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. Wikipedia:Metabolism metabolism metabolic process resulting in cell growth metabolism resulting in cell growth biological_process GO:0008152 Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. metabolic process GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. GOC:go_curators ISBN:0198547684 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. Wikipedia:Anabolism anabolism biosynthesis formation synthesis biological_process GO:0009058 biosynthetic process GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. GOC:curators ISBN:0198547684 The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GO:0043284 biopolymer biosynthetic process macromolecule anabolism macromolecule biosynthesis macromolecule formation macromolecule synthesis biological_process GO:0009059 macromolecule biosynthetic process GO:0009059 The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. CHEBI:33694 GOC:mah biopolymer biosynthetic process GOC:mtg_chebi_dec09 The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. energytaxis taxis in response to energy source biological_process GO:0009453 energy taxis GO:0009453 The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. GOC:jl PMID:11029423 The directed movement of a motile cell or organism in response to environmental oxygen. taxis in response to atmospheric oxygen biological_process GO:0009454 aerotaxis GO:0009454 The directed movement of a motile cell or organism in response to environmental oxygen. GOC:jl ISBN:0192801023 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. response to environmental stimulus biological_process GO:0009605 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. response to external stimulus GO:0009605 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. GOC:hb The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). biological_process GO:0009847 spore germination GO:0009847 The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). GOC:lr Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. down regulation of metabolic process down-regulation of metabolic process downregulation of metabolic process negative regulation of metabolism inhibition of metabolic process biological_process GO:0009892 negative regulation of metabolic process GO:0009892 Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. GOC:go_curators Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. GO:0008151 GO:0050875 cell physiology cellular physiological process cell growth and/or maintenance biological_process GO:0009987 cellular process GO:0009987 Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. GOC:go_curators GOC:isa_complete The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. Reactome:REACT_100537 Reactome:REACT_101147 Reactome:REACT_101952 Reactome:REACT_105649 Reactome:REACT_108313 Reactome:REACT_29068 Reactome:REACT_34240 Reactome:REACT_71 Reactome:REACT_78136 Reactome:REACT_78959 Reactome:REACT_79662 Reactome:REACT_85241 Reactome:REACT_85359 Reactome:REACT_86357 Reactome:REACT_89816 Reactome:REACT_91657 Reactome:REACT_91965 Reactome:REACT_93586 Reactome:REACT_93968 Reactome:REACT_94814 Reactome:REACT_98256 Wikipedia:Gene_expression biological_process GO:0010467 gene expression GO:0010467 The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. GOC:dph GOC:tb Reactome:REACT_100537 Gene Expression, Xenopus tropicalis Reactome:REACT_101147 Gene Expression, Danio rerio Reactome:REACT_101952 Gene Expression, Sus scrofa Reactome:REACT_105649 Gene Expression, Drosophila melanogaster Reactome:REACT_108313 Gene Expression, Caenorhabditis elegans Reactome:REACT_29068 Gene Expression, Escherichia coli Reactome:REACT_34240 Gene Expression, Staphylococcus aureus N315 Reactome:REACT_71 Gene Expression, Homo sapiens Reactome:REACT_78136 Gene Expression, Mus musculus Reactome:REACT_78959 Gene Expression, Taeniopygia guttata Reactome:REACT_79662 Gene Expression, Plasmodium falciparum Reactome:REACT_85241 Gene Expression, Oryza sativa Reactome:REACT_85359 Gene Expression, Gallus gallus Reactome:REACT_86357 Gene Expression, Canis familiaris Reactome:REACT_89816 Gene Expression, Mycobacterium tuberculosis Reactome:REACT_91657 Gene Expression, Arabidopsis thaliana Reactome:REACT_91965 Gene Expression, Rattus norvegicus Reactome:REACT_93586 Gene Expression, Dictyostelium discoideum Reactome:REACT_93968 Gene Expression, Bos taurus Reactome:REACT_94814 Gene Expression, Schizosaccharomyces pombe Reactome:REACT_98256 Gene Expression, Saccharomyces cerevisiae Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. Wikipedia:Regulation_of_gene_expression regulation of protein expression biological_process regulation of gene product expression GO:0010468 regulation of gene expression GO:0010468 Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. GOC:dph GOC:tb regulation of protein expression GOC:curators regulation of gene product expression GOC:curators Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. biological_process GO:0010605 negative regulation of macromolecule metabolic process GO:0010605 Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GOC:dph GOC:tb Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. biological_process GO:0010629 negative regulation of gene expression GO:0010629 Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. GOC:dph GOC:tb The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Reactome:REACT_107259 Reactome:REACT_107652 Reactome:REACT_110289 Reactome:REACT_21257 Reactome:REACT_30579 Reactome:REACT_31367 Reactome:REACT_33720 Reactome:REACT_80071 Reactome:REACT_83630 Reactome:REACT_84169 Reactome:REACT_85788 Reactome:REACT_88316 Reactome:REACT_89992 Reactome:REACT_91556 Reactome:REACT_92152 Reactome:REACT_94876 Reactome:REACT_99403 Reactome:REACT_99885 RNA metabolism biological_process GO:0016070 RNA metabolic process GO:0016070 The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. ISBN:0198506732 Reactome:REACT_107259 Metabolism of RNA, Sus scrofa Reactome:REACT_107652 Metabolism of RNA, Schizosaccharomyces pombe Reactome:REACT_110289 Metabolism of RNA, Danio rerio Reactome:REACT_21257 Metabolism of RNA, Homo sapiens Reactome:REACT_30579 Metabolism of RNA, Xenopus tropicalis Reactome:REACT_31367 Metabolism of RNA, Dictyostelium discoideum Reactome:REACT_33720 Metabolism of RNA, Plasmodium falciparum Reactome:REACT_80071 Metabolism of RNA, Caenorhabditis elegans Reactome:REACT_83630 Metabolism of RNA, Taeniopygia guttata Reactome:REACT_84169 Metabolism of RNA, Canis familiaris Reactome:REACT_85788 Metabolism of RNA, Oryza sativa Reactome:REACT_88316 Metabolism of RNA, Mus musculus Reactome:REACT_89992 Metabolism of RNA, Saccharomyces cerevisiae Reactome:REACT_91556 Metabolism of RNA, Bos taurus Reactome:REACT_92152 Metabolism of RNA, Drosophila melanogaster Reactome:REACT_94876 Metabolism of RNA, Arabidopsis thaliana Reactome:REACT_99403 Metabolism of RNA, Rattus norvegicus Reactome:REACT_99885 Metabolism of RNA, Gallus gallus Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. Wikipedia:Gene_silencing biological_process long-term maintenance of gene inactivation GO:0016458 Note that this process is the opposite of long-term maintenance of gene activation. gene silencing GO:0016458 Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. GOC:dph GOC:jid GOC:tb The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). heterocycle anabolism heterocycle biosynthesis heterocycle formation heterocycle synthesis biological_process GO:0018130 heterocycle biosynthetic process GO:0018130 The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). ISBN:0198547684 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. regulation of metabolism biological_process GO:0019222 regulation of metabolic process GO:0019222 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. GOC:go_curators The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. aromatic compound anabolism aromatic compound biosynthesis aromatic compound formation aromatic compound synthesis aromatic hydrocarbon biosynthesis aromatic hydrocarbon biosynthetic process biological_process GO:0019438 aromatic compound biosynthetic process GO:0019438 The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. GOC:ai The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. GO:0006411 Wikipedia:Protein_metabolism protein metabolic process and modification protein metabolism protein metabolism and modification biological_process GO:0019538 protein metabolic process GO:0019538 The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. GOC:ma The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process. Wikipedia:Asexual_reproduction biological_process GO:0019954 asexual reproduction GO:0019954 The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process. ISBN:0387520546 The cellular process that ensures successive accurate and complete genome replication and chromosome segregation. biological_process GO:0022402 cell cycle process GO:0022402 The cellular process that ensures successive accurate and complete genome replication and chromosome segregation. GOC:isa_complete GOC:mtg_cell_cycle The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. Wikipedia:Cellular_differentiation biological_process GO:0030154 cell differentiation GO:0030154 The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. ISBN:0198506732 The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. Wikipedia:Sporogenesis cellular spore formation by sporulation spore biosynthesis spore differentiation spore formation biological_process GO:0030435 Note that the synonym 'spore differentiation', like the term name and definition, refers to differentiation into a spore rather than any subsequent developmental changes that a spore may undergo. sporulation resulting in formation of a cellular spore GO:0030435 The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. GOC:mah GOC:pamgo_curators ISBN:0072992913 cellular spore formation by sporulation GOC:dph GOC:tb The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species. asexual spore formation mitotic spore formation mitotic sporulation biological_process GO:0030436 asexual sporulation GO:0030436 The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species. GOC:mah PMID:9529886 A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers. cellular_component GO:0031975 envelope GO:0031975 A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers. GOC:mah GOC:pz Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. Wikipedia:Transposon biological_process GO:0032196 transposition GO:0032196 Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. GOC:jp ISBN:1555812090 A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. development biological_process GO:0032502 developmental process GO:0032502 A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. GOC:isa_complete The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. RNA anabolism RNA biosynthesis RNA formation RNA synthesis biological_process GO:0032774 RNA biosynthetic process GO:0032774 The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. GOC:mah The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions. biological_process GO:0034301 endospore formation GO:0034301 The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions. GOC:ds GOC:mah ISBN:0470090278 The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria. biological_process GO:0034303 myxospore formation GO:0034303 The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria. GOC:ds ISBN:0122268008 The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. Reactome:REACT_102000 Reactome:REACT_103710 Reactome:REACT_107293 Reactome:REACT_108179 Reactome:REACT_109042 Reactome:REACT_13 Reactome:REACT_28699 Reactome:REACT_29108 Reactome:REACT_32429 Reactome:REACT_33347 Reactome:REACT_34326 Reactome:REACT_55564 Reactome:REACT_77741 Reactome:REACT_82379 Reactome:REACT_86268 Reactome:REACT_90299 Reactome:REACT_91959 Reactome:REACT_93580 Reactome:REACT_95666 Reactome:REACT_98086 Reactome:REACT_99241 cellular nitrogen compound metabolism biological_process GO:0034641 cellular nitrogen compound metabolic process GO:0034641 The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells. GOC:mah Reactome:REACT_102000 Metabolism of amino acids and derivatives, Mycobacterium tuberculosis Reactome:REACT_103710 Metabolism of amino acids and derivatives, Escherichia coli Reactome:REACT_107293 Metabolism of amino acids and derivatives, Arabidopsis thaliana Reactome:REACT_108179 Metabolism of amino acids and derivatives, Xenopus tropicalis Reactome:REACT_109042 Metabolism of amino acids and derivatives, Sus scrofa Reactome:REACT_13 Metabolism of amino acids and derivatives, Homo sapiens Reactome:REACT_28699 Metabolism of amino acids and derivatives, Saccharomyces cerevisiae Reactome:REACT_29108 Metabolism of amino acids and derivatives, Caenorhabditis elegans Reactome:REACT_32429 Metabolism of amino acids and derivatives, Rattus norvegicus Reactome:REACT_33347 Metabolism of amino acids and derivatives, Mus musculus Reactome:REACT_34326 Metabolism of amino acids and derivatives, Staphylococcus aureus N315 Reactome:REACT_55564 Metabolism of amino acids and derivatives, Gallus gallus Reactome:REACT_77741 Metabolism of amino acids and derivatives, Taeniopygia guttata Reactome:REACT_82379 Metabolism of amino acids and derivatives, Bos taurus Reactome:REACT_86268 Metabolism of amino acids and derivatives, Drosophila melanogaster Reactome:REACT_90299 Metabolism of amino acids and derivatives, Oryza sativa Reactome:REACT_91959 Metabolism of amino acids and derivatives, Plasmodium falciparum Reactome:REACT_93580 Metabolism of amino acids and derivatives, Danio rerio Reactome:REACT_95666 Metabolism of amino acids and derivatives, Canis familiaris Reactome:REACT_98086 Metabolism of amino acids and derivatives, Dictyostelium discoideum Reactome:REACT_99241 Metabolism of amino acids and derivatives, Schizosaccharomyces pombe The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells. GO:0034961 cellular biopolymer biosynthetic process cellular macromolecule anabolism cellular macromolecule biosynthesis cellular macromolecule formation cellular macromolecule synthesis biological_process GO:0034645 cellular macromolecule biosynthetic process GO:0034645 The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells. CHEBI:33694 GOC:mah cellular biopolymer biosynthetic process GOC:mtg_chebi_dec09 cellular macromolecule anabolism GOC:mah cellular macromolecule biosynthesis GOC:mah cellular macromolecule formation GOC:mah cellular macromolecule synthesis GOC:mah The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids. nucleobase, nucleoside, nucleotide and nucleic acid anabolism nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis nucleobase, nucleoside, nucleotide and nucleic acid formation nucleobase, nucleoside, nucleotide and nucleic acid synthesis biological_process GO:0034654 nucleobase-containing compound biosynthetic process GO:0034654 The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids. GOC:mah The increase in size or mass of an entire organism, a part of an organism or a cell. GO:0048590 biological_process growth pattern non-developmental growth GO:0040007 See also the biological process term 'cell growth ; GO:0016049'. growth GO:0040007 The increase in size or mass of an entire organism, a part of an organism or a cell. GOC:bf GOC:ma non-developmental growth GOC:mah Self-propelled movement of a cell or organism from one location to another. biological_process GO:0040011 locomotion GO:0040011 Self-propelled movement of a cell or organism from one location to another. GOC:dgh Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. response to chemical stimulus response to chemical substance biological_process GO:0042221 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. response to chemical GO:0042221 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. GOC:jl response to chemical stimulus GOC:dos The directed movement of a motile cell or organism in response to an external stimulus. Wikipedia:Taxis directed movement in response to stimulus biological_process GO:0042330 taxis GO:0042330 The directed movement of a motile cell or organism in response to an external stimulus. GOC:jl ISBN:0192801023 A prolongation or process extending from a cell, e.g. a flagellum or axon. cell process cellular process cellular projection cellular_component GO:0042995 cell projection GO:0042995 A prolongation or process extending from a cell, e.g. a flagellum or axon. GOC:jl http://www.cogsci.princeton.edu/~wn/ Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility. TFP-dependent motility TFP-dependent movement type 4 pilus-dependent motility type four pilus-dependent motility social gliding motility twitching motility biological_process GO:0043107 type IV pilus-dependent motility GO:0043107 Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility. GOC:go_curators PMID:12704238 The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. heterocyst biosynthesis heterocyst cell differentiation heterocyst formation biological_process GO:0043158 heterocyst differentiation GO:0043158 The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. GOC:jl The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GO:0043283 biopolymer metabolic process macromolecule metabolism biological_process GO:0043170 macromolecule metabolic process GO:0043170 The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. CHEBI:33694 GOC:mah biopolymer metabolic process GOC:mtg_chebi_dec09 The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. Wikipedia:Spore biological_process GO:0043934 sporulation GO:0043934 The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. GOC:pamgo_curators The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. biological_process GO:0043936 asexual sporulation resulting in formation of a cellular spore GO:0043936 The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction. GOC:pamgo_curators The chemical reactions and pathways by which individual cells transform chemical substances. cellular metabolism biological_process intermediary metabolism GO:0044237 cellular metabolic process GO:0044237 The chemical reactions and pathways by which individual cells transform chemical substances. GOC:go_curators intermediary metabolism GOC:mah The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. primary metabolism biological_process GO:0044238 primary metabolic process GO:0044238 The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. GOC:go_curators http://www.metacyc.org The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. cellular anabolism cellular biosynthesis cellular formation cellular synthesis biological_process GO:0044249 cellular biosynthetic process GO:0044249 The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. GOC:jl The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells. GO:0034960 cellular biopolymer metabolic process cellular macromolecule metabolism biological_process GO:0044260 cellular macromolecule metabolic process GO:0044260 The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells. CHEBI:33694 GOC:mah cellular biopolymer metabolic process GOC:mtg_chebi_dec09 The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification. Reactome:REACT_101554 Reactome:REACT_102155 Reactome:REACT_105825 Reactome:REACT_106151 Reactome:REACT_108005 Reactome:REACT_109022 Reactome:REACT_17015 Reactome:REACT_32904 Reactome:REACT_34473 Reactome:REACT_80561 Reactome:REACT_81994 Reactome:REACT_82523 Reactome:REACT_85873 Reactome:REACT_86658 Reactome:REACT_89852 Reactome:REACT_91052 Reactome:REACT_93132 Reactome:REACT_96466 Reactome:REACT_99179 cellular protein metabolism biological_process GO:0044267 cellular protein metabolic process GO:0044267 The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification. GOC:jl Reactome:REACT_101554 Metabolism of proteins, Gallus gallus Reactome:REACT_102155 Metabolism of proteins, Arabidopsis thaliana Reactome:REACT_105825 Metabolism of proteins, Dictyostelium discoideum Reactome:REACT_106151 Metabolism of proteins, Xenopus tropicalis Reactome:REACT_108005 Metabolism of proteins, Bos taurus Reactome:REACT_109022 Metabolism of proteins, Schizosaccharomyces pombe Reactome:REACT_17015 Metabolism of proteins, Homo sapiens Reactome:REACT_32904 Metabolism of proteins, Canis familiaris Reactome:REACT_34473 Metabolism of proteins, Taeniopygia guttata Reactome:REACT_80561 Metabolism of proteins, Escherichia coli Reactome:REACT_81994 Metabolism of proteins, Sus scrofa Reactome:REACT_82523 Metabolism of proteins, Danio rerio Reactome:REACT_85873 Metabolism of proteins, Saccharomyces cerevisiae Reactome:REACT_86658 Metabolism of proteins, Drosophila melanogaster Reactome:REACT_89852 Metabolism of proteins, Rattus norvegicus Reactome:REACT_91052 Metabolism of proteins, Caenorhabditis elegans Reactome:REACT_93132 Metabolism of proteins, Mus musculus Reactome:REACT_96466 Metabolism of proteins, Plasmodium falciparum Reactome:REACT_99179 Metabolism of proteins, Oryza sativa The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds. nitrogen compound anabolism nitrogen compound biosynthesis nitrogen compound formation nitrogen compound synthesis biological_process GO:0044271 cellular nitrogen compound biosynthetic process GO:0044271 The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds. GOC:jl ISBN:0198506732 Any constituent part of a cell, the basic structural and functional unit of all organisms. cellular subcomponent cellular_component protoplast GO:0044464 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. cell part GO:0044464 Any constituent part of a cell, the basic structural and functional unit of all organisms. GOC:jl cellular subcomponent NIF_Subcellular:sao628508602 protoplast GOC:mah A biological process that involves only one organism. single organism process biological_process GO:0044699 single-organism process GO:0044699 A biological process that involves only one organism. GOC:jl A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism. biological_process GO:0044710 single-organism metabolic process GO:0044710 A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism. GOC:jl A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. biological_process GO:0044711 single-organism biosynthetic process GO:0044711 A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. GOC:jl Any process that is carried out at the cellular level, occurring within a single organism. biological_process GO:0044763 single-organism cellular process GO:0044763 Any process that is carried out at the cellular level, occurring within a single organism. GOC:jl A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. biological_process GO:0044767 single-organism developmental process GO:0044767 A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. GOC:jl The DNA-dependent DNA replication that takes place as part of the cell cycle. biological_process GO:0044786 cell cycle DNA replication GO:0044786 The DNA-dependent DNA replication that takes place as part of the cell cycle. GOC:mtg_cell_cycle The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). heterocycle metabolism biological_process GO:0046483 heterocycle metabolic process GO:0046483 The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). CHEBI:5686 ISBN:0198506732 Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GO:0043118 down regulation of biological process down-regulation of biological process downregulation of biological process negative regulation of physiological process inhibition of biological process biological_process GO:0048519 negative regulation of biological process GO:0048519 Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GOC:jid The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. formation of an anatomical structure involved in morphogenesis biological_process GO:0048646 Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense. anatomical structure formation involved in morphogenesis GO:0048646 The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:dph GOC:jid GOC:tb formation of an anatomical structure involved in morphogenesis GOC:dph GOC:tb A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition. biological_process GO:0048869 cellular developmental process GO:0048869 A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition. GOC:isa_complete Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another. cell locomotion movement of a cell biological_process cell movement GO:0048870 cell motility GO:0048870 Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another. GOC:dgh GOC:dph GOC:isa_complete GOC:mlg Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GO:0050791 regulation of physiological process biological_process GO:0050789 regulation of biological process GO:0050789 Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. GOC:ai GOC:go_curators Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. GO:0051869 physiological response to stimulus biological_process GO:0050896 Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. response to stimulus GO:0050896 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. GOC:ai GOC:bf Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location. establishment and maintenance of localization establishment and maintenance of position localisation establishment and maintenance of cellular component location establishment and maintenance of substance location establishment and maintenance of substrate location biological_process GO:0051179 localization GO:0051179 Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location. GOC:ai localisation GOC:mah Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. biological_process GO:0060255 regulation of macromolecule metabolic process GO:0060255 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GOC:dph GOC:tb Any process that modulates a measurable attribute of any biological process, quality or function. regulation biological_process GO:0065007 biological regulation GO:0065007 Any process that modulates a measurable attribute of any biological process, quality or function. GOC:dph GOC:isa_complete GOC:mah GOC:pr GOC:vw The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. organic molecular entity metabolic process organic molecular entity metabolism organic substance metabolism biological_process GO:0071704 organic substance metabolic process GO:0071704 The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. CHEBI:50860 GOC:mah Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope. flagellin-based flagellar cell motility biological_process bacterial-type flagellar cell motility GO:0071973 bacterial-type flagellum-dependent cell motility GO:0071973 Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope. GOC:cilia GOC:krc GOC:mah flagellin-based flagellar cell motility GOC:mah Cell motility that results in the smooth movement of a cell through a liquid medium. cell swimming motility biological_process GO:0071975 cell swimming GO:0071975 Cell motility that results in the smooth movement of a cell through a liquid medium. PMID:18461074 cell swimming motility GOC:mah Cell motility that results in the smooth movement of a cell along a solid surface. cell gliding motility biological_process GO:0071976 cell gliding GO:0071976 Cell motility that results in the smooth movement of a cell along a solid surface. PMID:18461074 cell gliding motility GOC:mah Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria. bacterial-type flagellum-mediated cell swarming biological_process bacterial-type flagellar swarming motility GO:0071978 bacterial-type flagellum-dependent swarming motility GO:0071978 Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria. GOC:cilia PMID:14527279 PMID:18461074 bacterial-type flagellum-mediated cell swarming GOC:mah Any cellular metabolic process involving nucleic acids. biological_process GO:0090304 nucleic acid metabolic process GO:0090304 Any cellular metabolic process involving nucleic acids. GOC:dph GOC:tb Cell motility due to movement of bacterial- or archaeal-type flagella. biological_process GO:0097588 Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. This term was added for mapping to the UniProt keyword "flagellar rotation". For manual annotation, please use one of the child terms of GO:0097588 that refer specifically to either archaeal- or bacterial-type flagella. archaeal or bacterial-type flagellum-dependent cell motility GO:0097588 Cell motility due to movement of bacterial- or archaeal-type flagella. GOC:cilia GOC:krc The chemical reactions and pathways involving organic cyclic compound. organic cyclic compound metabolism biological_process GO:1901360 organic cyclic compound metabolic process GO:1901360 The chemical reactions and pathways involving organic cyclic compound. GOC:TermGenie organic cyclic compound metabolism GOC:TermGenie The chemical reactions and pathways resulting in the formation of organic cyclic compound. organic cyclic compound anabolism organic cyclic compound biosynthesis organic cyclic compound formation organic cyclic compound synthesis biological_process GO:1901362 organic cyclic compound biosynthetic process GO:1901362 The chemical reactions and pathways resulting in the formation of organic cyclic compound. GOC:TermGenie organic cyclic compound anabolism GOC:TermGenie organic cyclic compound biosynthesis GOC:TermGenie organic cyclic compound formation GOC:TermGenie organic cyclic compound synthesis GOC:TermGenie The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon. organic molecular entity anabolism organic molecular entity biosynthesis organic molecular entity biosynthetic process organic molecular entity formation organic molecular entity synthesis organic substance anabolism organic substance biosynthesis organic substance formation organic substance synthesis biological_process GO:1901576 organic substance biosynthetic process GO:1901576 The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon. GOC:TermGenie GOC:pr organic molecular entity anabolism GOC:TermGenie organic molecular entity biosynthesis GOC:TermGenie organic molecular entity formation GOC:TermGenie organic molecular entity synthesis GOC:TermGenie The observable manifestation of the genotype of a microbial cell or group of cells in an environment. 2011-03-10T04:01:50Z microbial_phenotype OMP:0000000 microbial phenotype OMP:0000000 The observable manifestation of the genotype of a microbial cell or group of cells in an environment. OMP:MCC A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. 2011-03-10T06:55:06Z GO:0048870 microbial_phenotype OMP:0000001 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. motility phenotype OMP:0000001 A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. OMP:MCC GO:0048870 cell motility An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control. 2011-03-10T07:02:42Z PATO:0002297 microbial_phenotype OMP:0000002 decreased motility OMP:0000002 An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control. OMP:MCC A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another. mchibucos 2011-04-14T02:30:07Z microbial_phenotype OMP:0000003 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell arrangement phenotype OMP:0000003 A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another. OMP:MCC A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus. mchibucos 2011-04-14T03:29:20Z microbial_phenotype OMP:0000004 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. taxis phenotype OMP:0000004 A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus. ISBN:0192800329 OMP:MCC A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another. mchibucos 2011-04-14T03:35:35Z microbial_phenotype motile OMP:0000005 presence of motility OMP:0000005 A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another. OMP:MCC An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete. mchibucos 2011-04-26T02:51:36Z microbial_phenotype OMP:0000006 presence of akinete formation OMP:0000006 An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete. OMP:MCC An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete. mchibucos 2011-04-26T02:52:52Z microbial_phenotype OMP:0000007 absence of akinete formation OMP:0000007 An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete. OMP:MCC A budding phenotype where an organism reproduces by the process of budding. mchibucos 2011-04-26T02:58:46Z microbial_phenotype OMP:0000008 presence of budding OMP:0000008 A budding phenotype where an organism reproduces by the process of budding. OMP:MCC siegele 2020-07-22T22:22:03Z microbial_phenotype OMP:0000009 decreased cell surface area-to-volume ratio OMP:0000009 A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst. mchibucos 2011-04-26T02:59:42Z microbial_phenotype OMP:0000010 presence of heterocysts OMP:0000010 A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst. OMP:MCC A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst. mchibucos 2011-04-26T02:59:42Z microbial_phenotype OMP:0000011 absence of heterocysts OMP:0000011 A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst. OMP:MCC A decreased spore germination phenotype where no spores germinate. mchibucos 2011-04-26T03:01:38Z microbial_phenotype OMP:0000012 abolished spore germination efficiency OMP:0000012 A decreased spore germination phenotype where no spores germinate. OMP:MCC An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control. mchibucos 2011-06-07T10:14:15Z microbial_phenotype OMP:0000013 decreased endospore formation OMP:0000013 An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control. OMP:JCH An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control. mchibucos 2011-06-07T10:14:39Z microbial_phenotype OMP:0000014 increased endospore formation OMP:0000014 An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control. OMP:JCH A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control. mchibucos 2011-04-26T03:05:35Z microbial_phenotype OMP:0000015 decreased heterocyst formation OMP:0000015 A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control. OMP:MCC A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period. mchibucos 2011-04-26T03:07:11Z microbial_phenotype OMP:0000016 delayed spore germination OMP:0000016 A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period. OMP:MCC An endospore formation phenotype where the cell possesses the ability to form an endospore. mchibucos 2011-04-26T03:09:10Z microbial_phenotype OMP:0000017 presence of endospore formation OMP:0000017 An endospore formation phenotype where the cell possesses the ability to form an endospore. OMP:MCC An endospore formation phenotype where the cell does not possess the ability to form an endospore. mchibucos 2011-04-26T03:09:25Z microbial_phenotype OMP:0000018 absence of endospore formation OMP:0000018 An endospore formation phenotype where the cell does not possess the ability to form an endospore. OMP:MCC siegele 2020-07-22T22:22:03Z microbial_phenotype OMP:0000019 increased cell surface area-to-volume ratio OMP:0000019 A myxospore formation phenotype where an organism possesses the ability to form myxospores. mchibucos 2011-04-26T03:10:51Z microbial_phenotype OMP:0000020 presence of myxospore formation OMP:0000020 A myxospore formation phenotype where an organism possesses the ability to form myxospores. OMP:MCC A myxospore formation phenotype where an organism does not possess the ability to form myxospores. mchibucos 2011-04-26T03:10:51Z microbial_phenotype OMP:0000021 absence of myxospore formation OMP:0000021 A myxospore formation phenotype where an organism does not possess the ability to form myxospores. OMP:MCC An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control. mchibucos 2011-04-26T03:10:51Z microbial_phenotype OMP:0000022 decreased myxospore formation OMP:0000022 An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control. OMP:MCC A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope. mchibucos 2011-06-07T11:12:48Z axial filament microbial_phenotype axial fibril endoflagella OMP:0000023 periplasmic flagellum/flagella OMP:0000023 A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope. ISBN:9780073402406 OMP:DAS An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control. mchibucos 2011-06-07T11:19:56Z microbial_phenotype OMP:0000024 altered flagellum length OMP:0000024 An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control. OMP:MCC siegele 2020-07-22T22:23:15Z microbial_phenotype OMP:0000025 altered cell surface area-to-volume ratio variability OMP:0000025 A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus. mchibucos 2011-06-06T02:39:55Z host-bacteriophage interaction phenotype host-phage interaction phenotype microbial_phenotype OMP:0000026 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. host-virus interaction phenotype OMP:0000026 A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus. OMP:JCH A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell. mchibucos 2011-04-26T03:26:26Z axial filament phenotype microbial_phenotype OMP:0000027 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. flagellum morphology phenotype OMP:0000027 A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell. OMP:MCC A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control. mchibucos 2011-04-26T03:29:28Z decreased fimbriae formation microbial_phenotype OMP:0000028 decreased number of pili OMP:0000028 A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control. OMP:MCC A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments. mchibucos 2011-04-26T03:29:34Z microbial_phenotype OMP:0000029 presence of flagellum OMP:0000029 A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments. OMP:MCC A flagellum phenotype where the organism does not possess a flagellum or flagella. mchibucos 2011-04-26T03:29:50Z microbial_phenotype non-flagellated phenotype OMP:0000030 absence of flagellum OMP:0000030 A flagellum phenotype where the organism does not possess a flagellum or flagella. OMP:MCC An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control. mchibucos 2011-04-26T03:41:37Z microbial_phenotype OMP:0000031 altered flagellum shape OMP:0000031 An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control. OMP:MCC siegele 2020-07-22T22:24:44Z microbial_phenotype OMP:0000032 decreased cell surface area-to-volume ratio variability OMP:0000032 A pilus phenotype where an organism does not possess a pilus. mchibucos 2011-04-26T03:44:01Z fimbria absent microbial_phenotype OMP:0000033 absence of pilus OMP:0000033 A pilus phenotype where an organism does not possess a pilus. OMP:MCC A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions. mchibucos 2011-04-26T03:44:22Z fimbria present microbial_phenotype OMP:0000034 Fimbria (plural, fimbriae) is a common synonym for pilus (plural, pili). presence of pilus OMP:0000034 A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions. OMP:MCC A pilus phenotype where the cell possesses a pilus that was distorted during formation. mchibucos 2011-04-26T03:44:34Z malformed fimbrium microbial_phenotype OMP:0000035 malformed pilus OMP:0000035 A pilus phenotype where the cell possesses a pilus that was distorted during formation. OMP:MCC An altered capsule phenotype where the amount of capsule is increased relative to a designated control. mchibucos 2011-06-07T10:53:11Z microbial_phenotype OMP:0000036 increased amount of capsule OMP:0000036 An altered capsule phenotype where the amount of capsule is increased relative to a designated control. OMP:DAS An altered flagellum length phenotype where the length of the flagellum is longer than a designated control. mchibucos 2011-06-07T11:25:05Z microbial_phenotype OMP:0000037 increased flagellum length OMP:0000037 An altered flagellum length phenotype where the length of the flagellum is longer than a designated control. OMP:MCC siegele 2020-07-22T22:24:44Z microbial_phenotype OMP:0000038 increased cell surface area-to-volume ratio variability OMP:0000038 A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment. mchibucos 2011-06-06T03:36:04Z microbial_phenotype OMP:0000039 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. O2 effects on population growth phenotype OMP:0000039 A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment. OMP:WAM An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control. mchibucos 2011-04-26T03:47:26Z microbial_phenotype OMP:0000040 decreased cell size OMP:0000040 An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control. OMP:MCC An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control. mchibucos 2011-04-26T03:49:09Z microbial_phenotype OMP:0000041 increased cell size OMP:0000041 An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control. OMP:MCC A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population. mchibucos 2011-04-26T03:51:47Z microbial_phenotype OMP:0000042 anucleoid OMP:0000042 A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population. OMP:DAS A nucleoid phenotype dealing with the number of nucleoid regions in the cell. mchibucos 2011-04-26T03:53:34Z microbial_phenotype OMP:0000043 nucleoid number phenotype OMP:0000043 A nucleoid phenotype dealing with the number of nucleoid regions in the cell. OMP:WAM Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2). siegele 2020-07-22T22:30:41Z microbial_phenotype OMP:0000044 altered cell circularity OMP:0000044 Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2). OMP:das An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control. mchibucos 2011-04-26T04:08:26Z PATO:0002298 microbial_phenotype OMP:0000045 increased motility OMP:0000045 An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control. OMP:MCC A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient. mchibucos 2011-04-26T04:17:42Z microbial_phenotype OMP:0000046 presence of chemotaxis OMP:0000046 A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient. OMP:MCC A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2). mchibucos 2011-04-26T04:18:11Z GO:0009454 microbial_phenotype OMP:0000047 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. aerotaxis phenotype OMP:0000047 A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2). ISBN:0192800329 OMP:MCC GO:0009454 aerotaxis A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient. mchibucos 2011-04-26T04:27:11Z GO:0006935 microbial_phenotype OMP:0000048 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. ChEBI cross product candidate (and child terms). chemotaxis phenotype OMP:0000048 A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient. ISBN:0198506732 OMP:MCC An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2). mchibucos 2011-04-26T04:27:42Z microbial_phenotype OMP:0000049 presence of aerotaxis OMP:0000049 An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2). OMP:MCC An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control. mchibucos 2011-06-07T10:53:59Z microbial_phenotype OMP:0000050 decreased amount of capsule OMP:0000050 An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control. OMP:DAS siegele 2020-07-22T22:32:02Z microbial_phenotype OMP:0000051 decreased cell circularity OMP:0000051 A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical. mchibucos 2011-04-26T04:42:14Z microbial_phenotype OMP:0000052 presence of positive chemotaxis OMP:0000052 A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical. OMP:MCC A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical). mchibucos 2011-04-26T04:42:14Z microbial_phenotype repellent OMP:0000053 presence of negative chemotaxis OMP:0000053 A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical). OMP:MCC An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical. mchibucos 2011-04-26T04:42:14Z microbial_phenotype OMP:0000054 absence of positive chemotaxis OMP:0000054 An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical. OMP:MCC An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical. mchibucos 2011-04-26T04:42:14Z microbial_phenotype OMP:0000055 absence of negative chemotaxis OMP:0000055 An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical. OMP:MCC A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen. mchibucos 2011-04-26T04:44:17Z GO:0052131 microbial_phenotype OMP:0000056 presence of positive aerotaxis OMP:0000056 A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen. OMP:MCC A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen. mchibucos 2011-04-26T04:44:17Z GO:0052130 microbial_phenotype OMP:0000057 presence of negative aerotaxis OMP:0000057 A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen. OMP:MCC An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2). mchibucos 2011-04-26T04:44:17Z microbial_phenotype OMP:0000058 absence of positive aerotaxis OMP:0000058 An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2). OMP:MCC An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2). mchibucos 2011-04-26T04:44:17Z microbial_phenotype OMP:0000059 absence of negative aerotaxis OMP:0000059 An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2). OMP:MCC A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. mchibucos 2011-04-26T05:02:51Z microbial_phenotype OMP:0000060 presence of quorum sensing OMP:0000060 A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. OMP:MCC An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control. mchibucos 2011-04-26T05:02:57Z PATO:0002147 less virulent microbial_phenotype OMP:0000061 decreased virulence OMP:0000061 An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control. OMP:MCC An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control. mchibucos 2011-04-26T05:03:12Z PATO:0002148 microbial_phenotype more virulent OMP:0000062 increased virulence OMP:0000062 An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control. OMP:MCC A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. mchibucos 2011-04-26T05:06:00Z microbial_phenotype OMP:0000063 absence of quorum sensing OMP:0000063 A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules. OMP:MCC siegele 2020-07-22T22:32:02Z microbial_phenotype OMP:0000064 increased cell circularity OMP:0000064 A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host). mchibucos 2011-04-26T05:06:35Z avirulence incompatible interaction microbial_phenotype OMP:0000065 absence of virulence OMP:0000065 A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host). OMP:MCC A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished. mchibucos 2011-04-26T05:09:24Z microbial_phenotype OMP:0000066 abolished virulence OMP:0000066 A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished. OMP:MCC A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces. adrienne 2011-02-02T03:28:43Z microbial_phenotype OMP:0000067 presence of motility by swarming OMP:0000067 A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces. OMP:MCC A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host). adrienne 2011-02-02T03:28:59Z infectious agent pathogen APO:0000048 GO:0009405 microbial_phenotype OMP:0000068 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. virulence phenotype OMP:0000068 A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host). OMP:MCC APO:0000048 virulence GO:0009405 pathogenesis A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves. adrienne 2011-02-07T03:47:50Z GO:0009372 microbial_phenotype OMP:0000069 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. quorum sensing phenotype OMP:0000069 A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves. GO:0009372 OMP:MCC GO:0009372 quorum sensing A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition. adrienne 2011-02-02T03:11:48Z GO:0048869 microbial_phenotype OMP:0000070 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell development phenotype OMP:0000070 A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition. OMP:MCC GO:0048869 cellular developmental process A microbial phenotype related to the form and structure of a microbial cell. adrienne 2011-02-02T03:15:16Z APO:0000050 microbial_phenotype OMP:0000071 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell morphology phenotype OMP:0000071 A microbial phenotype related to the form and structure of a microbial cell. OMP:MCC APO:0000050 cellular morphology A cell arrangement phenotype where cells are joined end-to-end in linear chains. adrienne 2011-02-02T03:31:35Z microbial_phenotype OMP:0000072 filamentous OMP:0000072 A cell arrangement phenotype where cells are joined end-to-end in linear chains. OMP:MCC A cell morphology phenotype where the trait in question is the shape of a cell. adrienne 2011-02-02T03:18:02Z APO:0000051 microbial_phenotype OMP:0000073 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell shape phenotype OMP:0000073 A cell morphology phenotype where the trait in question is the shape of a cell. OMP:MCC APO:0000051 cell shape A cell morphology phenotype where the trait in question is the size of a cell. adrienne 2011-02-02T03:18:19Z APO:0000052 microbial_phenotype OMP:0000074 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell size phenotype OMP:0000074 A cell morphology phenotype where the trait in question is the size of a cell. OMP:MCC APO:0000052 cell size A spheroid cell phenotype where a cell is spherical or nearly spherical. adrienne 2011-02-02T03:18:29Z spherical-shaped microbial_phenotype OMP:0000075 coccus OMP:0000075 A spheroid cell phenotype where a cell is spherical or nearly spherical. ISBN:9780073402406 OMP:MCC A cylindrical cell phenotype where an organism has rod-shaped cells. adrienne 2011-02-02T03:18:47Z bacillus microbial_phenotype OMP:0000076 rod-shaped cells OMP:0000076 A cylindrical cell phenotype where an organism has rod-shaped cells. ISBN:9780073402406 OMP:MCC A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral. adrienne 2011-02-02T03:19:31Z microbial_phenotype OMP:0000077 vibrio OMP:0000077 A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral. ISBN:9780073402406 OMP:AEZ A flagellum phenotype where the trait in question is the location of the flagellum on an organism. adrienne 2011-02-02T03:43:16Z microbial_phenotype OMP:0000078 flagellum arrangement phenotype OMP:0000078 A flagellum phenotype where the trait in question is the location of the flagellum on an organism. OMP:MCC A flagellum distribution phenotype where an organism has a single flagellum. adrienne 2011-02-02T03:44:18Z single flagellum microbial_phenotype OMP:0000079 monotrichous OMP:0000079 A flagellum distribution phenotype where an organism has a single flagellum. ISBN:9780073402406 A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell. adrienne 2011-02-02T03:45:34Z microbial_phenotype OMP:0000080 amphitrichous OMP:0000080 A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell. ISBN:9780073402406 OMP:MCC A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell. adrienne 2011-02-02T03:46:16Z microbial_phenotype OMP:0000081 lophotrichous OMP:0000081 A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell. ISBN:9780073402406 A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface. adrienne 2011-02-02T03:46:44Z microbial_phenotype OMP:0000082 peritrichous flagella OMP:0000082 A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface. ISBN:9780073402406 OMP:MCC A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell. adrienne 2011-02-02T03:47:44Z GO:0042995 cell appendage phenotype microbial_phenotype OMP:0000083 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. cell projection morphology phenotype OMP:0000083 A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell. GO:0042995 OMP:MCC GO:0042995 cell projection A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell. adrienne 2011-02-02T03:47:57Z fimbria phenotype microbial_phenotype OMP:0000084 pilus morphology phenotype OMP:0000084 A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell. ISBN:9780073402406 OMP:MCC fimbria phenotype GO:0009289 A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope. adrienne 2011-02-02T03:49:03Z microbial_phenotype OMP:0000085 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell envelope morphology phenotype OMP:0000085 A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope. OMP:MCC A cell shape phenotype where a cell is helical or cork-screw shaped. adrienne 2011-02-02T03:19:47Z spirillum spirochete vibrio microbial_phenotype curved rod OMP:0000086 spiral cell shape OMP:0000086 A cell shape phenotype where a cell is helical or cork-screw shaped. OMP:MCC A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present. mchibucos 2011-06-06T03:42:26Z facultative aerobe microbial_phenotype OMP:0000087 facultative anaerobe OMP:0000087 A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present. ISBN:9780073402406 OMP:WAM facultative aerobe ISBN:978-0134261928 A colony form phenotype characterized by growth of thin individual projections in the colony. mchibucos 2011-06-07T12:08:48Z SNOMEDCT:31153000 microbial_phenotype OMP:0000088 filamentous colony OMP:0000088 A colony form phenotype characterized by growth of thin individual projections in the colony. OMP:WAM An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism. adrienne 2011-02-02T03:23:41Z GO:0007114 microbial_phenotype OMP:0000089 budding phenotype OMP:0000089 An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism. OMP:DAS GO:0007114 cell budding An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells. adrienne 2011-02-02T03:24:11Z microbial_phenotype OMP:0000090 lifespan phenotype OMP:0000090 An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells. OMP:WAM A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction. adrienne 2011-02-02T03:24:24Z GO:0043934 microbial_phenotype OMP:0000091 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. sporulation phenotype OMP:0000091 A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction. OMP:MCC GO:0043934 sporulation A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. adrienne 2011-02-02T03:24:43Z GO:0043158 microbial_phenotype OMP:0000092 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. heterocyst formation phenotype OMP:0000092 A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen. DOI:10.1046/j.1469-8137.1999.00505.x OMP:MCC GO:0043158 heterocyst differentiation A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell. adrienne 2011-02-02T03:25:02Z GO:0034302 microbial_phenotype OMP:0000093 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes typically are more resistant to dessication and other environmental stresses than vegetative cells. akinete formation phenotype OMP:0000093 A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell. OMP:MCC doi:10.1046/j.1469-8137.1999.00505.x GO:0034302 akinete formation A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. adrienne 2011-02-02T03:25:29Z FAO:0000019 GO:0034301 microbial_phenotype OMP:0000094 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. endospore formation phenotype OMP:0000094 A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. OMP:MCC FAO:0000019 spore GO:0034301 endospore formation A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). adrienne 2011-02-02T03:25:47Z GO:0009847 microbial_phenotype OMP:0000095 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. spore germination phenotype OMP:0000095 A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall). OMP:MCC GO:0009847 spore germination A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria. adrienne 2011-02-02T03:26:41Z GO:0034303 microbial_phenotype OMP:0000096 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. myxospore formation phenotype OMP:0000096 A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria. OMP:MCC GO:0034303 myxospore formation A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient. adrienne 2011-02-02T03:28:13Z microbial_phenotype OMP:0000097 absence of chemotaxis OMP:0000097 A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient. OMP:MCC A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control. mchibucos 2011-04-28T02:11:35Z PATO:0002146 compatible interaction virulence microbial_phenotype OMP:0000098 altered virulence OMP:0000098 A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control. OMP:MCC A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells. mchibucos 2011-06-07T03:17:22Z microbial_phenotype OMP:0000099 hemolysis test OMP:0000099 A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells. OMP:WAM A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium. Adrienne 2011-02-02T02:14:39Z APO:0000060 microbial_phenotype colony appearance phenotype OMP:0000100 colony morphology phenotype OMP:0000100 A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium. ISBN:9780073302089 OMP:WAM APO:0000060 colony appearance A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated. Adrienne 2011-02-07T03:45:44Z microbial_phenotype OMP:0000101 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial communication phenotype OMP:0000101 A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated. OMP:JCH A colony morphology phenotype dealing with the degree to which light can pass through a colony. mchibucos 2011-06-07T12:18:14Z microbial_phenotype OMP:0000102 colony opacity phenotype OMP:0000102 A colony morphology phenotype dealing with the degree to which light can pass through a colony. OMP:WAM A colony morphology phenotype dealing with the basic shape or form of a colony or colonies. Adrienne 2011-02-02T02:41:50Z microbial_phenotype OMP:0000103 colony form phenotype OMP:0000103 A colony morphology phenotype dealing with the basic shape or form of a colony or colonies. OMP:WAM A colony morphology phenotype dealing with the height or vertical growth of the colony. Adrienne 2011-02-02T02:42:12Z microbial_phenotype OMP:0000104 colony elevation phenotype OMP:0000104 A colony morphology phenotype dealing with the height or vertical growth of the colony. OMP:WAM A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present. mchibucos 2011-06-06T03:43:38Z microbial_phenotype OMP:0000105 aerotolerant anaerobe OMP:0000105 A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present. ISBN:9780073402406 OMP:WAM A colony surface phenotype characterized by a soft luster on the surface. Adrienne 2011-02-02T02:42:37Z microbial_phenotype OMP:0000106 colony sheen phenotype OMP:0000106 A colony surface phenotype characterized by a soft luster on the surface. OMP:JCH A colony morphology phenotype related to the color of a colony or colonies. Adrienne 2011-02-02T02:43:25Z microbial_phenotype OMP:0000107 colony pigmentation phenotype OMP:0000107 A colony morphology phenotype related to the color of a colony or colonies. OMP:WAM A colony morphology phenotype dealing with the interaction of a colony or colonies and light. Adrienne 2011-02-02T02:43:46Z microbial_phenotype OMP:0000108 colony optical phenotype OMP:0000108 A colony morphology phenotype dealing with the interaction of a colony or colonies and light. OMP:JCH A mucoid colony phenotype where the colonies are mucoid. Adrienne 2011-02-07T03:38:08Z microbial_phenotype viscous colony texture OMP:0000109 presence of mucoid colonies OMP:0000109 A mucoid colony phenotype where the colonies are mucoid. ISBN:1555810489 OMP:WAM viscous colony texture OMP:WAM A colony opacity phenotype characterized by inability of light to pass through it. Adrienne 2011-02-02T02:45:02Z SNOMED:P3-51350 microbial_phenotype OMP:0000110 opaque colony OMP:0000110 A colony opacity phenotype characterized by inability of light to pass through it. OMP:WAM A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium. adrienne 2011-02-07T03:17:40Z microbial_phenotype OMP:0000111 In Bacteria and Archaea, motility by swimming is typically powered by a flagellum or flagella. In Protists, swimming motility is typically powered by cilia or flagella. presence of motility by swimming OMP:0000111 A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium. OMP:MCC A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface. adrienne 2011-02-07T03:18:03Z microbial_phenotype OMP:0000112 presence of motility by gliding OMP:0000112 A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface. OMP:MCC A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili. adrienne 2011-02-07T03:18:13Z GO:0043107 microbial_phenotype OMP:0000113 Twitching motility of bacteria typically involves type IV pili. presence of motility by twitching OMP:0000113 A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili. OMP:MCC PMID:12142488 GO:0043107 type IV pilus-dependent motility A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance. Adrienne 2011-02-02T02:45:20Z SNOMED:P3-51370 semi-translucent microbial_phenotype OMP:0000114 translucent colony OMP:0000114 A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance. OMP:WAM A colony opacity phenotype characterized by a clear appearance. Adrienne 2011-02-02T02:45:41Z SNOMED:P3-51360 microbial_phenotype OMP:0000115 transparent colony OMP:0000115 A colony opacity phenotype characterized by a clear appearance. OMP:WAM A colony pigmentation phenotype where colonies are pigmented. Adrienne 2011-02-02T02:46:17Z microbial_phenotype OMP:0000116 pigmented colony OMP:0000116 A colony pigmentation phenotype where colonies are pigmented. OMP:WAM A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane. adrienne 2011-02-18T02:29:12Z microbial_phenotype OMP:0000117 diplococcus OMP:0000117 A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane. ISBN:9780073402406 OMP:AEZ A cell arrangement phenotype where chains of coccus cells arise from division events in one plane. adrienne 2011-02-18T02:31:37Z microbial_phenotype OMP:0000118 streptococcus OMP:0000118 A cell arrangement phenotype where chains of coccus cells arise from division events in one plane. OMP:AEZ A cell arrangement phenotype where squares of four coccus cells arise from division in two planes. adrienne 2011-02-18T02:33:22Z micrococcus arrangement microbial_phenotype OMP:0000119 tetrad OMP:0000119 A cell arrangement phenotype where squares of four coccus cells arise from division in two planes. OMP:AEZ A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes. adrienne 2011-02-18T02:34:40Z microbial_phenotype OMP:0000120 sarcina OMP:0000120 A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes. OMP:AEZ A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes. adrienne 2011-02-18T02:39:34Z microbial_phenotype OMP:0000121 staphylococcus OMP:0000121 A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes. OMP:AEZ A cell arrangement phenotype where bacillis cells are arranged in chains. adrienne 2011-02-18T02:47:10Z microbial_phenotype OMP:0000122 streptobacillus OMP:0000122 A cell arrangement phenotype where bacillis cells are arranged in chains. OMP:AEZ A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod). adrienne 2011-02-18T02:48:21Z microbial_phenotype OMP:0000123 coccobacillus cell shape OMP:0000123 A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod). ISBN:9780073402406 OMP:MCC A spiral cell shape phenotype where a cell forms a rigid spiral. adrienne 2011-02-18T02:51:54Z microbial_phenotype OMP:0000124 spirillum OMP:0000124 A spiral cell shape phenotype where a cell forms a rigid spiral. ISBN:9780073402406 OMP:AEZ A spiral cell shape phenotype where a cell forms a flexible spiral. adrienne 2011-02-18T02:52:33Z microbial_phenotype OMP:0000125 spirochete OMP:0000125 A spiral cell shape phenotype where a cell forms a flexible spiral. ISBN:9780073402406 OMP:AEZ A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width. adrienne 2011-02-18T02:55:59Z microbial_phenotype OMP:0000126 trichome-forming OMP:0000126 A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width. OMP:DAS PMID:5318446 A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath. adrienne 2011-02-18T02:59:18Z microbial_phenotype OMP:0000127 sheathed OMP:0000127 A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath. OMP:MCC A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol. adrienne 2011-02-18T02:59:38Z prosthecate bacterium microbial_phenotype OMP:0000128 stalked cell shape OMP:0000128 A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol. OMP:MCC PMID:14245437 prosthecate bacterium URL:http://en.wikipedia.org/wiki/Prosthecate_bacteria A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell. adrienne 2011-02-18T02:59:57Z microbial_phenotype square OMP:0000129 cuboidal cell shape OMP:0000129 A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell. OMP:MCC A cell shape phenotype where a cell has projections that form points. adrienne 2011-02-18T03:00:30Z microbial_phenotype OMP:0000130 star-shaped cell shape OMP:0000130 A cell shape phenotype where a cell has projections that form points. OMP:MCC A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes). adrienne 2011-02-18T03:00:58Z PATO:0001979 microbial_phenotype OMP:0000131 lobed cell shape OMP:0000131 A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes). OMP:MCC PATO:0001979 lobed A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form. adrienne 2011-02-18T03:01:18Z PATO:0001356 microbial_phenotype OMP:0000132 pleomorphic cell shape OMP:0000132 A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form. ISBN:9780073402406 OMP:MCC A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another. adrienne 2011-02-18T03:33:32Z microbial_phenotype non-motile OMP:0000133 absence of motility OMP:0000133 A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another. OMP:MCC An akinete morphology phenotype where the organism forms a spherical akinete. adrienne 2011-02-18T03:40:27Z microbial_phenotype OMP:0000134 spherical akinete OMP:0000134 An akinete morphology phenotype where the organism forms a spherical akinete. OMP:JCH An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane. adrienne 2011-02-18T03:41:16Z microbial_phenotype OMP:0000135 akinete envelope attribute OMP:0000135 An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane. OMP:JCH A nucleoid phenotype dealing with shape of the nucleoid region. adrienne 2011-02-21T04:16:30Z microbial_phenotype OMP:0000136 in vitro nucleoid shape OMP:0000136 A nucleoid phenotype dealing with shape of the nucleoid region. OMP:WAM A colony pigmentation phenotype colonies are non-pigmented. Adrienne 2011-02-02T02:46:39Z colorless colony microbial_phenotype OMP:0000137 non-pigmented colony OMP:0000137 A colony pigmentation phenotype colonies are non-pigmented. OMP:WAM Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2). siegele 2020-07-22T22:32:45Z microbial_phenotype OMP:0000138 altered cell circularity variability OMP:0000138 A colony form phenotype characterized by a dull luster on the surface. Adrienne 2011-02-02T02:47:21Z SNOMED:P3-513150 microbial_phenotype matte rough OMP:0000139 dull colony sheen OMP:0000139 A colony form phenotype characterized by a dull luster on the surface. OMP:JCH A nucleoid phenotype that describes the distribution of within a cell or cells. adrienne 2011-02-21T04:25:41Z microbial_phenotype OMP:0000140 nucleoid spacing OMP:0000140 A nucleoid phenotype that describes the distribution of within a cell or cells. OMP:AZ A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing. adrienne 2011-02-21T04:26:57Z microbial_phenotype OMP:0000141 regular nucleoid spacing OMP:0000141 A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing. OMP:AZ A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing. adrienne 2011-02-21T04:27:22Z microbial_phenotype OMP:0000142 irregular nucleoid spacing OMP:0000142 A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing. OMP:AZ A nucleoid number phenotype where there is only one nucleoid region in the cell. adrienne 2011-02-21T04:27:48Z microbial_phenotype OMP:0000143 single nucleoid OMP:0000143 A nucleoid number phenotype where there is only one nucleoid region in the cell. OMP:WAM A nucleoid number phenotype where there is more than one nucleoid regions in the cell. adrienne 2011-02-21T04:28:30Z microbial_phenotype OMP:0000144 multiple nucleoids OMP:0000144 A nucleoid number phenotype where there is more than one nucleoid regions in the cell. OMP:WAM A nucleoid phenotype that describes the location of the nucleoid within a cell or cells. adrienne 2011-02-21T04:30:32Z microbial_phenotype OMP:0000145 nucleoid localization OMP:0000145 A nucleoid phenotype that describes the location of the nucleoid within a cell or cells. OMP:JCH A nucleoid localization phenotype where the nucleoid is localized at the center of the cell. adrienne 2011-02-21T04:31:22Z microbial_phenotype OMP:0000146 midcell nucleoid localization OMP:0000146 A nucleoid localization phenotype where the nucleoid is localized at the center of the cell. OMP:WAM A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell. adrienne 2011-02-21T04:31:46Z microbial_phenotype OMP:0000147 polar nucleoid localization OMP:0000147 A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell. OMP:WAM A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell. adrienne 2011-02-21T04:32:04Z microbial_phenotype OMP:0000148 quarter cell nucleoid localization OMP:0000148 A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell. OMP:AZ A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification. Adrienne 2011-02-02T02:47:43Z microbial_phenotype OMP:0000149 colony margin phenotype OMP:0000149 A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification. OMP:WAM A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined. adrienne 2011-02-21T04:36:21Z microbial_phenotype genophore OMP:0000150 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nucleoid phenotype OMP:0000150 A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined. OMP:MCC A colony margin phenotype characterized by smooth growth, with no projections along the edge. Adrienne 2011-02-02T02:47:59Z SNOMEDCT:12774002 microbial_phenotype OMP:0000151 entire margin OMP:0000151 A colony margin phenotype characterized by smooth growth, with no projections along the edge. OMP:WAM A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell. adrienne 2011-02-22T02:27:29Z microbial_phenotype dumbbell nucleoid OMP:0000152 doublet nucleoid OMP:0000152 A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell. OMP:WAM dumbbell nucleoid OMP:WAM A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted. adrienne 2011-02-22T02:27:58Z microbial_phenotype OMP:0000153 singlet nucleoid OMP:0000153 A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted. OMP:WAM A colony margin phenotype characterized by wavy growth along the colony edge. Adrienne 2011-02-02T02:48:11Z SNOMEDCT:48408000 microbial_phenotype OMP:0000154 undulate margin OMP:0000154 A colony margin phenotype characterized by wavy growth along the colony edge. OMP:WAM SNOMEDCT:48408000 Bacterial colony morphology, undulate margin A colony margin phenotype characterized by lobed growth along the colony edge. Adrienne 2011-02-02T02:48:33Z SNOMEDCT:36580002 microbial_phenotype OMP:0000155 lobate margin OMP:0000155 A colony margin phenotype characterized by lobed growth along the colony edge. OMP:WAM A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony. Adrienne 2011-02-02T02:48:46Z SNOMEDCT:86734000 microbial_phenotype OMP:0000156 erose margin OMP:0000156 A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony. OMP:WAM A colony margin phenotype characterized by thread or filamentous shaped edge. Adrienne 2011-02-02T02:49:05Z SNOMEDCT:42844005 microbial_phenotype filamentous margin OMP:0000157 filiform margin OMP:0000157 A colony margin phenotype characterized by thread or filamentous shaped edge. OMP:JCH SNOMEDCT:42844005 Bacterial colony morphology, filamentous margin A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony. Adrienne 2011-02-02T02:49:30Z SNOMEDCT:85764001 microbial_phenotype OMP:0000158 curled margin OMP:0000158 A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony. OMP:JCH An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2). adrienne 2011-03-02T02:06:09Z microbial_phenotype OMP:0000159 absence of aerotaxis OMP:0000159 An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2). OMP:MCC A colony elevation phenotype characterized by no growth above the medium. Adrienne 2011-02-02T02:49:49Z SNOMED:P3-51130 microbial_phenotype OMP:0000160 flat colony elevation OMP:0000160 A colony elevation phenotype characterized by no growth above the medium. OMP:WAM A colony elevation phenotype characterized by uniform growth above the medium. Adrienne 2011-02-02T02:50:01Z SNOMED:P3-51140 microbial_phenotype OMP:0000161 raised colony elevation OMP:0000161 A colony elevation phenotype characterized by uniform growth above the medium. OMP:WAM A colony elevation phenotype characterized by sloping up from the edges. Adrienne 2011-02-02T02:50:11Z SNOMEDCT:26875006 microbial_phenotype OMP:0000162 convex colony elevation OMP:0000162 A colony elevation phenotype characterized by sloping up from the edges. OMP:WAM SNOMEDCT:26875006 Bacterial colony elevation, convex A colony elevation phenotype characterized by sloping steeply from edges and very high in the center. Adrienne 2011-02-02T02:50:30Z microbial_phenotype OMP:0000163 pulvinate colony elevation OMP:0000163 A colony elevation phenotype characterized by sloping steeply from edges and very high in the center. OMP:WAM A colony elevation phenotype characterized by raised growth in the center. Adrienne 2011-02-02T02:50:42Z SNOMEDCT:70929009 microbial_phenotype OMP:0000164 umbonate colony elevation OMP:0000164 A colony elevation phenotype characterized by raised growth in the center. OMP:WAM SNOMEDCT:70929009 Bacterial colony elevation, umbonate A colony size phenotype where colony size is increased relative to a designated control. mchibucos 2011-06-07T01:55:00Z microbial_phenotype OMP:0000165 increased colony size OMP:0000165 A colony size phenotype where colony size is increased relative to a designated control. OMP:JCH A colony form phenotype characterized by growth in a round shape. Adrienne 2011-02-02T02:51:18Z SNOMEDCT:64781005 microbial_phenotype OMP:0000166 circular colony OMP:0000166 A colony form phenotype characterized by growth in a round shape. OMP:WAM A colony form phenotype characterized by growth without a defined shape or size. Adrienne 2011-02-02T02:51:35Z SNOMEDCT:39696006 microbial_phenotype OMP:0000167 irregular colony OMP:0000167 A colony form phenotype characterized by growth without a defined shape or size. OMP:WAM A colony form phenotype characterized by the growth of thin, branching projections. Adrienne 2011-02-02T02:51:57Z SNOMEDCT:113047000 microbial_phenotype OMP:0000168 rhizoid colony OMP:0000168 A colony form phenotype characterized by the growth of thin, branching projections. OMP:WAM A colony form phenotype characterized by growth being wide in the middle then tapering at both ends. Adrienne 2011-02-02T02:52:30Z SNOMEDCT:77324006 microbial_phenotype OMP:0000169 spindle colony OMP:0000169 A colony form phenotype characterized by growth being wide in the middle then tapering at both ends. OMP:JCH siegele 2020-07-22T22:34:00Z microbial_phenotype OMP:0000170 decreased cell circularity variability OMP:0000170 An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%). A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2. mchibucos 2011-06-06T03:44:11Z microbial_phenotype OMP:0000171 Optimal oxygen levels for growth of typical microaerophilic bacteria is 2 to 10% O2, and growth is impaired by atmospheric oxygen levels (approx. 21%). microaerophile OMP:0000171 An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%). A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2. ISBN:9780073402406 OMP:WAM A stress response phenotype dealing with the response to exposure to chemical stimuli. mchibucos 2011-06-06T04:16:08Z microbial_phenotype OMP:0000172 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to chemical stimulus phenotype OMP:0000172 A stress response phenotype dealing with the response to exposure to chemical stimuli. OMP:WAM A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). Adrienne 2011-02-02T03:13:32Z microbial_phenotype OMP:0000173 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to stress phenotype OMP:0000173 A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). FYPO:0002549 GO:0006950 OMP:WAM A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell. Adrienne 2011-02-02T03:13:59Z GO:0040007 microbial_phenotype OMP:0000174 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. For phenotypes affecting growth of a population, see OMP:0007167 ! population growth phenotype. growth phenotype OMP:0000174 A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell. GO:0040007 OMP:WAM GO:0040007 growth A cell projection phenotype where the structure in question is a tube. mchibucos 2011-06-07T02:59:54Z microbial_phenotype OMP:0000175 nanotube phenotype OMP:0000175 A cell projection phenotype where the structure in question is a tube. OMP:DAS A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation. Adrienne 2011-02-02T03:17:19Z microbial_phenotype OMP:0000176 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. biofilm formation phenotype OMP:0000176 A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation. GO:0042710 OMP:WAM A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium. Adrienne 2011-02-02T03:20:39Z APO:0000064 microbial_phenotype OMP:0000177 liquid culture morphology phenotype OMP:0000177 A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium. OMP:WAM APO:0000064 liquid culture appearance A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs. Adrienne 2011-02-02T03:21:00Z clumping APO:0000065 flocculation microbial_phenotype OMP:0000178 flocculation phenotype OMP:0000178 A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs. GO:0000128 ISBN:9780763743031 OMP:WAM APO:0000065 flocculation A colony morphology phenotype dealing with the size of the colony. Adrienne 2011-02-02T03:22:43Z microbial_phenotype OMP:0000179 colony size phenotype OMP:0000179 A colony morphology phenotype dealing with the size of the colony. OMP:WAM A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. mchibucos 2011-06-06T03:59:59Z Metabolism microbial_phenotype OMP:0000180 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. metabolic phenotype OMP:0000180 A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. GO:0008152 A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony. mchibucos 2011-06-07T12:18:54Z microbial_phenotype OMP:0000181 colony with diffusible pigment OMP:0000181 A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony. OMP:WAM A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth. Adrienne 2011-02-07T03:52:30Z microbial_phenotype OMP:0000182 gas production test OMP:0000182 A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth. OMP:JCH A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor. Adrienne 2011-02-07T03:52:44Z GO:0019420 dissimilatory sulfate reduction sulfide production microbial_phenotype OMP:0000183 anaerobic respiration with sulfate as the terminal acceptor OMP:0000183 A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor. ISBN:978-0-07-340240-6 OMP:DAS GO:0019420 dissimilatory sulfate reduction dissimilatory sulfate reduction ISBN:978-0-07-340240-6 A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2). Adrienne 2011-02-02T03:29:34Z strict anaerobe microbial_phenotype OMP:0000184 obligate anaerobe OMP:0000184 A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2). ISBN:9780073402406 OMP:WAM A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth. Adrienne 2011-02-02T03:29:51Z strict aerobe microbial_phenotype OMP:0000185 obligate aerobe OMP:0000185 A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth. ISBN:9780073402406 OMP:WAM siegele 2020-07-22T22:34:00Z microbial_phenotype OMP:0000186 increased cell circularity variability OMP:0000186 A liquid culture morphology phenotype where cells group together and form small particles in the medium. mchibucos 2011-06-07T02:22:14Z granulation in liquid microbial_phenotype precipitation in liquid culture OMP:0000187 granulation phenotype OMP:0000187 A liquid culture morphology phenotype where cells group together and form small particles in the medium. ISBN:9780763743031 OMP:WAM A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol. Adrienne 2011-02-02T03:34:29Z GO:0009275 microbial_phenotype OMP:0000188 gram positive OMP:0000188 A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol. OMP:DAS GO:0009275 Gram-positive-bacterium-type cell wall A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol. Adrienne 2011-02-02T03:34:45Z GO:0009276 microbial_phenotype OMP:0000189 gram negative OMP:0000189 A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol. OMP:DAS GO:0009276 Gram-negative-bacterium-type cell wall A gram stain phenotype where a cell or cells give variable results to the gram stain. Adrienne 2011-02-02T03:34:58Z microbial_phenotype OMP:0000190 gram variable OMP:0000190 A gram stain phenotype where a cell or cells give variable results to the gram stain. OMP:DAS A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol. Adrienne 2011-02-02T03:35:15Z SNOMEDCT:385484003 microbial_phenotype OMP:0000191 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. gram stain phenotype OMP:0000191 A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol. ISBN:978-0-07-340240-6 ISBN:978-0077292812 OMP:DAS SNOMEDCT:385484003 Gram stain A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals. Adrienne 2011-02-03T11:24:08Z microbial_phenotype OMP:0000192 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chemical production phenotype OMP:0000192 A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals. OMP:JCH An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control. siegele 2020-07-22T22:35:03Z microbial_phenotype OMP:0000193 altered cell aspect ratio OMP:0000193 An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control. OMP:das A catalase test phenotype where an organism exhibits catalase activity. mchibucos 2011-06-06T04:28:49Z microbial_phenotype OMP:0000194 catalase positive OMP:0000194 A catalase test phenotype where an organism exhibits catalase activity. OMP:JCH An altered catalase activity phenotype where catalase activity is decreased relative to a designated control. mchibucos 2011-06-06T04:29:20Z microbial_phenotype OMP:0000195 decreased catalase activity OMP:0000195 An altered catalase activity phenotype where catalase activity is decreased relative to a designated control. OMP:JCH An altered catalase activity phenotype where catalase activity is increased relative to a designated control. mchibucos 2011-06-06T04:29:39Z positive regulation of catalase activity microbial_phenotype OMP:0000196 increased catalase activity OMP:0000196 An altered catalase activity phenotype where catalase activity is increased relative to a designated control. OMP:JCH positive regulation of catalase activity GO:1902553 A microbial phenotype related to the interactions between a microbe and its host(s). Adrienne 2011-02-03T11:25:01Z APO:0000287 GO:0051704 microbial_phenotype OMP:0000197 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbe-host interaction phenotype OMP:0000197 A microbial phenotype related to the interactions between a microbe and its host(s). OMP:WAM APO:0000287 interaction with host/environment GO:0051704 multi-organism process A catalase test phenotype where an organism doesn't exhibit catalase activity. mchibucos 2011-06-06T04:30:12Z microbial_phenotype OMP:0000198 catalase negative OMP:0000198 A catalase test phenotype where an organism doesn't exhibit catalase activity. OMP:JCH A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin. Adrienne 2011-02-03T11:38:46Z microbial_phenotype OMP:0000199 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. acid-fast staining phenotype OMP:0000199 A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin. ISBN:978-0-07-729281-1 OMP:DAS A colony pigmentation phenotype characterized by pigmentation only in the colony. mchibucos 2011-06-07T12:19:32Z microbial_phenotype OMP:0000200 colony with non-diffusible pigment OMP:0000200 A colony pigmentation phenotype characterized by pigmentation only in the colony. OMP:WAM A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube. Adrienne 2011-03-02T01:41:52Z nanotubule mediated communication microbial_phenotype OMP:0000201 nanotube mediated communication OMP:0000201 A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube. OMP:WAM PMID:21335240 A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles. Adrienne 2011-03-02T01:43:12Z microbial_phenotype OMP:0000202 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. outer membrane vesicles phenotype OMP:0000202 A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles. OMP:JCH PMID:20825345 A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope. mchibucos 2011-06-07T09:44:51Z APO:0000331 microbial_phenotype glycocalyx slime layer OMP:0000203 capsule phenotype OMP:0000203 A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope. ISBN:9780073402406 OMP:DAS APO:0000331 capsule formation A capsule phenotype where a cell or cells have a capsule. mchibucos 2011-06-07T09:45:20Z microbial_phenotype glycocalyx slime layer OMP:0000204 When present, the capsule layer lies outside the cell wall and/or outer membrane. presence of capsule OMP:0000204 A capsule phenotype where a cell or cells have a capsule. OMP:DAS glycocalyx OMP:DAS slime layer OMP:DAS A biofilm phenotype where the biofilm is formed by a single species. mchibucos 2011-06-07T02:26:30Z microbial_phenotype OMP:0000205 forms single species biofilm OMP:0000205 A biofilm phenotype where the biofilm is formed by a single species. OMP:WAM A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control. mchibucos 2011-06-07T03:17:46Z microbial_phenotype OMP:0000206 altered hemolysis test result OMP:0000206 A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control. OMP:WAM A microbial phenotype that is distinguished by the presence a specific surface antigen. Adrienne 2011-03-02T02:16:33Z serovar microbial_phenotype antigenic typing phenotype serological test phenotype OMP:0000207 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. serotype phenotype OMP:0000207 A microbial phenotype that is distinguished by the presence a specific surface antigen. OMP:MCC A hemolysis test phenotype where a cell or cells does not cause hemolysis. mchibucos 2011-06-07T03:18:33Z microbial_phenotype OMP:0000208 absence of hemolysis OMP:0000208 A hemolysis test phenotype where a cell or cells does not cause hemolysis. OMP:WAM A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence. mchibucos 2011-06-07T12:20:31Z microbial_phenotype OMP:0000209 fluorescent colony OMP:0000209 A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence. OMP:WAM A colony morphology phenotype that describes the appearance of the surface of a colony or colonies. mchibucos 2011-06-07T12:31:24Z microbial_phenotype OMP:0000210 colony surface phenotype OMP:0000210 A colony morphology phenotype that describes the appearance of the surface of a colony or colonies. OMP:WAM A capsule phenotype where a cell or cells lack capsule. mchibucos 2011-06-07T09:49:20Z microbial_phenotype OMP:0000211 absence of capsule OMP:0000211 A capsule phenotype where a cell or cells lack capsule. OMP:DAS A colony surface phenotype where colonies have a shiny glistening surface. mchibucos 2011-06-07T12:32:12Z SNOMEDCT:90926009 microbial_phenotype OMP:0000212 smooth colony surface OMP:0000212 A colony surface phenotype where colonies have a shiny glistening surface. ISBN:1555810489 OMP:WAM SNOMEDCT:90926009 Bacterial colony surface, smooth An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control. mchibucos 2011-06-07T09:53:17Z microbial_phenotype OMP:0000213 increased number of flagella OMP:0000213 An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control. OMP:DAS A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification. Adrienne 2011-02-03T01:33:37Z APO:0000061 microbial_phenotype OMP:0000214 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell staining phenotype OMP:0000214 A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification. OMP:DAS APO:0000061 colony color An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control. mchibucos 2011-06-07T09:54:51Z microbial_phenotype OMP:0000215 decreased number of flagella OMP:0000215 An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control. OMP:DAS A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor. Adrienne 2011-02-07T03:53:18Z microbial_phenotype OMP:0000216 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. aerobic respiration phenotype OMP:0000216 A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor. ISBN:978-0-07-340240-6 OMP:DAS An altered hemolysis phenotype where hemolysis is increased relative to a designated control. mchibucos 2011-06-07T03:19:00Z microbial_phenotype OMP:0000217 increased hemolysis OMP:0000217 An altered hemolysis phenotype where hemolysis is increased relative to a designated control. OMP:WAM A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water. Adrienne 2011-02-03T04:43:28Z GO:0004096 microbial_phenotype OMP:0000218 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O [EC:1.11.1.6]. catalase test phenotype OMP:0000218 A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water. ISBN:9780895828309 OMP:JCH GO:0004096 catalase activity A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine. Adrienne 2011-02-03T04:43:53Z microbial_phenotype OMP:0000219 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. decarboxylase test phenotype OMP:0000219 A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine. ISBN:9780895828309 OMP:JCH A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products. Adrienne 2011-02-03T04:44:11Z microbial_phenotype OMP:0000220 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. oxidase test phenotype OMP:0000220 A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products. ISBN:9780895828309 OMP:JCH A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes. Adrienne 2011-02-03T04:44:39Z FYPO:0000654 GO:0003824 microbial_phenotype catalytic activity OMP:0000221 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. enzymatic activity phenotype OMP:0000221 A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes. ISBN:0198506732 OMP:JCH FYPO:0000654 catalytic activity phenotype GO:0003824 catalytic activity A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide. Adrienne 2011-02-03T04:45:37Z GO:0009039 microbial_phenotype OMP:0000222 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. urease test phenotype OMP:0000222 A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide. ISBN:9780895828309 OMP:JCH GO:0009039 urease activity An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control. siegele 2020-07-22T22:36:00Z microbial_phenotype OMP:0000223 decreased cell aspect ratio OMP:0000223 An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control. OMP:das A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers. mchibucos 2011-06-06T04:53:09Z bioenergetics microbial_phenotype OMP:0000224 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. energy metabolism phenotype OMP:0000224 A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers. OMP:JCH A chemical production phenotype where carbon dioxide is produced. Adrienne 2011-02-07T03:53:37Z microbial_phenotype OMP:0000225 carbon dioxide production OMP:0000225 A chemical production phenotype where carbon dioxide is produced. OMP:JCH An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control. siegele 2020-07-22T22:36:00Z microbial_phenotype OMP:0000226 increased cell aspect ratio OMP:0000226 An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control. OMP:das siegele 2020-07-22T22:37:16Z microbial_phenotype OMP:0000227 altered cell aspect ratio variability OMP:0000227 A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface. mchibucos 2011-06-07T12:32:41Z SNOMEDCT:77092005 microbial_phenotype OMP:0000228 rough colony surface OMP:0000228 A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface. ISBN:1555810489 OMP:WAM SNOMEDCT:77092005 Bacterial colony surface, rough A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle. mchibucos 2011-06-07T12:34:58Z microbial_phenotype colony texture OMP:0000229 colony consistency phenotype OMP:0000229 A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle. ISBN:1555810489 OMP:WAM A colony surface phenotype that is characterized by a surface that is wrinkled. mchibucos 2011-06-07T12:35:30Z microbial_phenotype wrinkled colony surface OMP:0000230 rugose colony surface OMP:0000230 A colony surface phenotype that is characterized by a surface that is wrinkled. OMP:JCH A colony elevation phenotype characterized by growth into the medium not above it. mchibucos 2011-06-07T12:38:26Z microbial_phenotype OMP:0000231 growth into medium OMP:0000231 A colony elevation phenotype characterized by growth into the medium not above it. OMP:WAM A colony opacity phenotype characterized by varying colors being observed in reflected light. mchibucos 2011-06-07T12:39:13Z microbial_phenotype OMP:0000232 iridescent colony OMP:0000232 A colony opacity phenotype characterized by varying colors being observed in reflected light. OMP:WAM siegele 2020-07-22T22:38:22Z microbial_phenotype OMP:0000233 decreased cell aspect ratio variability OMP:0000233 A colony consistency phenotype where a colony or colonies have a butter-like consistency. mchibucos 2011-06-07T12:41:24Z SNOMEDCT:25778006 buttery colony consistency microbial_phenotype OMP:0000234 butyrous colony consistency OMP:0000234 A colony consistency phenotype where a colony or colonies have a butter-like consistency. ISBN:1555810489 OMP:WAM SNOMEDCT:25778006 Bacterial colony consistency, butyrous siegele 2020-07-22T22:38:22Z microbial_phenotype OMP:0000235 increased cell aspect ratio variability OMP:0000235 A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency. mchibucos 2011-06-07T12:42:40Z SNOMEDCT:87916001 friable colony microbial_phenotype OMP:0000236 dry colony consistency OMP:0000236 A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency. ISBN:1555810489 OMP:WAM SNOMEDCT:87916001 Bacterial colony consistency, friable A morphology phenotype dealing with the smell a colony produces. mchibucos 2011-06-07T12:45:12Z microbial_phenotype OMP:0000237 colony odor phenotype OMP:0000237 A morphology phenotype dealing with the smell a colony produces. OMP:WAM A colony elevation phenotype characterized by crater like growth. mchibucos 2011-06-07T01:11:04Z microbial_phenotype OMP:0000238 crateriform colony elevation OMP:0000238 A colony elevation phenotype characterized by crater like growth. OMP:WAM A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated. mchibucos 2011-06-07T01:11:50Z microbial_phenotype OMP:0000239 plicate colony surface OMP:0000239 A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated. OMP:JCH A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm. mchibucos 2011-06-07T01:50:03Z SNOMEDCT:55699002 microbial_phenotype OMP:0000240 punctiform colony OMP:0000240 A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm. OMP:WAM A colony size phenotype where colony size is decreased relative to a designated control. mchibucos 2011-06-07T01:55:22Z microbial_phenotype OMP:0000241 decreased colony size OMP:0000241 A colony size phenotype where colony size is decreased relative to a designated control. OMP:JCH A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis. mchibucos 2011-06-07T01:58:00Z concentric colony surface texture microbial_phenotype OMP:0000242 concentrically ringed surface colony OMP:0000242 A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis. OMP:JCH A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate. mchibucos 2011-06-07T02:04:20Z microbial_phenotype OMP:0000243 sectored colony OMP:0000243 A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate. OMP:WAM A colony form phenotype characterized by growth of small, round or cone-shaped protuberances. mchibucos 2011-06-07T02:06:19Z colony papillation microbial_phenotype OMP:0000244 papillated colony OMP:0000244 A colony form phenotype characterized by growth of small, round or cone-shaped protuberances. OMP:JCH A biofilm phenotype where the formation involves two or more species. mchibucos 2011-06-07T02:27:00Z microbial_phenotype OMP:0000245 participates in multi-species biofilm OMP:0000245 A biofilm phenotype where the formation involves two or more species. OMP:WAM A nanotube phenotype where a cell or cells have the ability to produce nanotubes. mchibucos 2011-06-07T03:00:25Z microbial_phenotype OMP:0000246 presence of nanotubes OMP:0000246 A nanotube phenotype where a cell or cells have the ability to produce nanotubes. OMP:JCH A nanotube phenotype where a cell or cells lack the ability to produce nanotubes. mchibucos 2011-06-07T03:01:32Z microbial_phenotype OMP:0000247 absence of nanotubes OMP:0000247 A nanotube phenotype where a cell or cells lack the ability to produce nanotubes. OMP:JCH A biofilm phenotype dealing with the structural formation of the biofilm. mchibucos 2011-06-07T03:05:56Z microbial_phenotype OMP:0000248 biofilm architecture phenotype OMP:0000248 A biofilm phenotype dealing with the structural formation of the biofilm. OMP:WAM An altered hemolysis phenotype where hemolysis is decreased relative to a designated control. mchibucos 2011-06-07T03:19:25Z microbial_phenotype OMP:0000249 decreased hemolysis OMP:0000249 An altered hemolysis phenotype where hemolysis is decreased relative to a designated control. OMP:WAM A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control. siegele 2020-07-22T22:55:26Z abnormal cell division microbial_phenotype OMP:0000250 altered cell division OMP:0000250 A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control. OMP:das abnormal cell division FYPO:0000186 siegele 2020-07-22T22:58:18Z microbial_phenotype OMP:0000251 altered cell division ratio variability OMP:0000251 A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism. mchibucos 2011-07-21T12:51:15Z microbial_phenotype OMP:0000252 metabolite accumulation OMP:0000252 A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism. OMP:JCH A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation. mchibucos 2011-07-21T01:03:06Z FYPO:0000142 GO:0010467 microbial_phenotype OMP:0000253 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. gene expression phenotype OMP:0000253 A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation. ISBN:9781615835409 OMP:WAM FYPO:0000142 gene expression phenotype GO:0010467 gene expression An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively. mchibucos 2011-07-21T01:05:42Z constitutive gene expression microbial_phenotype OMP:0000254 constitutive transcription OMP:0000254 An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively. OMP:WAM A growth phenotype related to the morphology of colonies on solid medium. mchibucos 2011-07-21T01:34:48Z microbial_phenotype OMP:0000255 This term was made obsolete because it is redundant with OMP:0000100 ! colony morphology phenotype. plating morphology phenotype true OMP:0000255 A growth phenotype related to the morphology of colonies on solid medium. OMP:WAM A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium. ** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself. mchibucos 2011-07-21T01:35:25Z microbial_phenotype OMP:0000256 This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself. MacConkey agar phenotype true OMP:0000256 A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium. ** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself. OMP:AZ siegele 2020-07-22T23:00:48Z microbial_phenotype OMP:0000257 decreased cell division ratio variability OMP:0000257 A colony morphology phenotype where cells form a red colony on MacConkey agar medium. mchibucos 2011-07-21T01:38:10Z microbial_phenotype OMP:0000258 This term was made obsolete because 'red colony on MacConkey agar' was determined to be evidence for a phenotype, i.e. utilization of a particular sugar, rather than the phenotype itself. red colony on MacConkey agar true OMP:0000258 A colony morphology phenotype where cells form a red colony on MacConkey agar medium. OMP:AZ siegele 2020-07-22T23:00:48Z microbial_phenotype OMP:0000259 increased cell division ratio variability OMP:0000259 siegele 2020-07-22T23:02:57Z microbial_phenotype OMP:0000260 altered nucleoid area OMP:0000260 siegele 2020-07-22T23:04:02Z microbial_phenotype OMP:0000261 decreased nucleoid area OMP:0000261 siegele 2020-07-22T23:04:02Z microbial_phenotype OMP:0000262 increased nucleoid area OMP:0000262 siegele 2020-07-22T23:05:16Z microbial_phenotype OMP:0000263 altered nucleoid area variability OMP:0000263 siegele 2020-07-22T23:06:26Z microbial_phenotype OMP:0000264 decreased nucleoid area variability OMP:0000264 siegele 2020-07-22T23:06:26Z microbial_phenotype OMP:0000265 increased nucleoid area variability OMP:0000265 siegele 2020-07-22T23:15:57Z microbial_phenotype OMP:0000266 altered cell population growth rate OMP:0000266 An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control. mchibucos 2011-07-21T02:01:35Z microbial_phenotype OMP:0000267 increased gene expression OMP:0000267 An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control. OMP:WAM An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control. mchibucos 2011-07-21T02:02:26Z microbial_phenotype OMP:0000268 decreased gene expression OMP:0000268 An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control. OMP:WAM A microbial phenotype related to the enzymatic or other activity of a protein. mchibucos 2011-07-21T02:05:51Z microbial_phenotype OMP:0000269 This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. During OMP call on 2016-01-27 we decided to delete the term OMP:0000269 ! protein activity phenotype because when observing a phenotype we don't know what kind of molecule is doing something, just that a particular activity is absent, present, or altered. protein activity phenotype true OMP:0000269 A microbial phenotype related to the enzymatic or other activity of a protein. APO:0000022 OMP:WAM siegele 2020-07-22T23:16:35Z microbial_phenotype OMP:0000270 decreased cell population growth rate OMP:0000270 siegele 2020-07-22T23:16:35Z microbial_phenotype OMP:0000271 increased cell population growth rate OMP:0000271 siegele 2020-07-23T10:45:45Z microbial_phenotype OMP:0000272 cell morphology variability OMP:0000272 siegele 2020-07-23T11:13:40Z microbial_phenotype OMP:0000273 altered cell perimeter length OMP:0000273 A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe. mchibucos 2011-07-21T02:21:21Z CHEBI:33281 antibiotic resistance phenotype antifungal resistance phenotype antimetabolite resistance phenotype antiviral resistance phenotype microbial_phenotype antibiotic sensitivity phenotype antimicrobial compound sensitivity phenotype OMP:0000274 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. antimicrobial agent resistance phenotype OMP:0000274 A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe. CHEBI:33281 OMP:MCC CHEBI:33281 antimicrobial agent siegele 2020-07-23T11:14:11Z microbial_phenotype OMP:0000275 decreased cell perimeter OMP:0000275 siegele 2020-07-23T11:14:11Z microbial_phenotype OMP:0000276 increased cell perimeter OMP:0000276 siegele 2020-07-23T11:14:34Z microbial_phenotype OMP:0000277 altered cell perimeter length variability OMP:0000277 siegele 2020-07-23T11:15:25Z microbial_phenotype OMP:0000278 decreased cell perimeter length variability OMP:0000278 siegele 2020-07-23T11:15:25Z microbial_phenotype OMP:0000279 increased cell perimeter length variability OMP:0000279 An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control. mchibucos 2011-07-21T02:37:15Z FYPO:0000017 microbial_phenotype OMP:0000280 The mukB mutant appear to have elongated cell length. This is different from cell filamentation. PMID:1989883. increased cell length OMP:0000280 An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control. OMP:DAS FYPO:0000017 elongated cell siegele 2020-07-23T11:38:45Z microbial_phenotype OMP:0000281 altered cell population phenotype OMP:0000281 An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control. mchibucos 2011-07-21T02:43:01Z decreased growth rate increased generation time increased doubling time microbial_phenotype OMP:0000282 decreased population growth rate OMP:0000282 An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control. OMP:DAS An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control. mchibucos 2011-07-21T02:43:22Z decreased generation time increased growth rate decreased doubling time microbial_phenotype OMP:0000283 increased population growth rate OMP:0000283 An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control. OMP:DAS siegele 2020-07-23T12:28:35Z microbial_phenotype OMP:0000284 altered cell population growth yield OMP:0000284 siegele 2020-07-23T12:29:32Z microbial_phenotype OMP:0000285 decreased cell population growth yield OMP:0000285 siegele 2020-07-23T12:29:32Z microbial_phenotype OMP:0000286 increased cell population growth yield OMP:0000286 population growth phenotype siegele 2020-07-23T12:46:03Z microbial_phenotype OMP:0000287 altered fraction of non-constricted cells OMP:0000287 siegele 2020-07-23T12:47:02Z microbial_phenotype OMP:0000288 decreased fraction of non-constricted cells OMP:0000288 An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control. mchibucos 2011-07-21T04:07:44Z microbial_phenotype OMP:0000289 In Escherichia coli mutations in the muk or par genes result in an increased number of anucleoid cells. increased number of anucleoid cells OMP:0000289 An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control. OMP:DAS A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information. mchibucos 2011-07-21T04:24:02Z RNA double stranded DNA single stranded DNA microbial_phenotype OMP:0000290 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. genetic material phenotype OMP:0000290 A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information. ISBN:9780198529170 OMP:WAM RNA ISBN:9780198529170 double stranded DNA ISBN:9780198529170 single stranded DNA ISBN:9780198529170 A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes. mchibucos 2011-07-21T04:25:09Z microbial_phenotype OMP:0000291 This term was obsoleted because it is rarely used. Instead, genophore phenotype is listed as a synonym of nucleoid phenotype. genophore phenotype true OMP:0000291 A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes. ISBN:9780195307610 ISBN:9781613441138 OMP:DAS siegele 2020-07-23T12:47:02Z microbial_phenotype OMP:0000292 increased fraction of non-constricted cells OMP:0000292 siegele 2020-07-23T12:50:06Z microbial_phenotype OMP:0000293 altered fraction of cells with one nucleoid OMP:0000293 A genetic material phenotype related to supercoiling of a double-stranded DNA molecule. mchibucos 2011-07-21T04:46:29Z microbial_phenotype OMP:0000294 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. DNA supercoiling phenotype OMP:0000294 A genetic material phenotype related to supercoiling of a double-stranded DNA molecule. OMP:DAS A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix. mchibucos 2011-07-21T04:47:38Z microbial_phenotype underwound DNA OMP:0000295 presence of negative supercoiling OMP:0000295 A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix. ISBN:9781613441138 A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix. mchibucos 2011-07-21T04:48:22Z microbial_phenotype overwound DNA OMP:0000296 presence of positive supercoiling OMP:0000296 A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix. ISBN:9781613441138 siegele 2020-07-23T12:50:57Z microbial_phenotype OMP:0000297 decreased fraction of cells with one nucleoid OMP:0000297 siegele 2020-07-23T12:50:57Z microbial_phenotype OMP:0000298 increased fraction of cells with one nucleoid OMP:0000298 An enzymatic activity phenotype where galactose-1-phosphate uridyl transferase activity is present. mchibucos 2011-07-21T05:12:43Z microbial_phenotype OMP:0000299 This term was obsoleted in response to the decision to not have terms for individual enzyme activities unless those activities are commonly used for identification or classification. galactose-1-phosphate uridyl transferase activity true OMP:0000299 siegele 2020-07-23T12:52:56Z microbial_phenotype OMP:0000300 altered fraction of cells with two nucleoids OMP:0000300 siegele 2020-07-23T12:53:45Z microbial_phenotype OMP:0000301 decreased fraction of cells with two nucleoids OMP:0000301 siegele 2020-07-23T12:53:45Z microbial_phenotype OMP:0000302 increased fraction of cells with two nucleoids OMP:0000302 siegele 2020-07-23T14:15:02Z microbial_phenotype OMP:0000303 altered correlation between nucleoid and cell constriction during cell division OMP:0000303 A substrate binding phenotype where a protein has increased affinity for a substrate. mchibucos 2011-07-21T05:18:58Z microbial_phenotype OMP:0000304 This term was obsoleted in response to the decision that Kd measurements are too granular a phenotype for OMP, at least at this time. The issue can be reconsidered if a need for such terms arises in the future. increased substrate binding true OMP:0000304 siegele 2020-07-23T14:16:06Z microbial_phenotype OMP:0000305 decreased correlation between nucleoid and cell constriction during cell division OMP:0000305 A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. mchibucos 2011-07-21T05:44:45Z microbial_phenotype OMP:0000306 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. macromolecular biosynthesis phenotype OMP:0000306 A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. GO:0009059 OMP:WAM A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle. mchibucos 2011-07-21T05:45:47Z GO:0044786 microbial_phenotype OMP:0000307 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. DNA replication phenotype OMP:0000307 A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle. OMP:WAM GO:0044786 cell cycle DNA replication A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control. mchibucos 2011-07-21T05:46:05Z microbial_phenotype OMP:0000308 over-initiation of DNA replication OMP:0000308 A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control. OMP:WAM A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. mchibucos 2011-07-21T05:47:06Z Biosynthesis microbial_phenotype OMP:0000309 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. biosynthetic phenotype OMP:0000309 A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. GO:0009058 A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. mchibucos 2011-07-21T05:49:51Z microbial_phenotype OMP:0000310 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. small molecule biosynthesis phenotype OMP:0000310 A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. OMP:JCH A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur. mchibucos 2011-07-21T05:50:25Z microbial_phenotype OMP:0000311 amino acid biosynthesis phenotype OMP:0000311 A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur. OMP:JCH A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. mchibucos 2012-04-05T11:43:53Z GO:0040011 microbial_phenotype OMP:0000312 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. locomotion phenotype OMP:0000312 A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another. GO:0040011 OMP:MCC GO:0040011 locomotion siegele 2020-07-23T14:16:06Z microbial_phenotype OMP:0000313 increased correlation between nucleoid and cell constriction during cell division OMP:0000313 siegele 2020-07-23T14:18:50Z microbial_phenotype OMP:0000314 This is a population average. altered degree of nucleoid constriction at the onset of cell constriction OMP:0000314 siegele 2020-07-23T14:19:22Z microbial_phenotype OMP:0000315 decreased degree of nucleoid constriction at the onset of cell constriction OMP:0000315 siegele 2020-07-23T14:19:22Z microbial_phenotype OMP:0000316 increased degree of nucleoid constriction at the onset of cell constriction OMP:0000316 siegele 2020-11-18T10:05:19Z microbial_phenotype OMP:0000317 cell diameter phenotype OMP:0000317 siegele 2020-07-26T17:23:35Z microbial_phenotype OMP:0000318 presence of cell length variability OMP:0000318 siegele 2020-11-26T13:14:47Z microbial_phenotype OMP:0000319 cell area phenotype OMP:0000319 siegele 2020-07-26T17:25:52Z microbial_phenotype OMP:0000320 presence of cell diameter variability OMP:0000320 An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties. mchibucos 2012-11-02T01:51:04Z polyketide resistance phenotype CHEBI:25105 FK506 amphotericin B resistance phenotype azithromycin resistance phenotype bafilomycin A1 resistance phenotype brasilinolide A resistance phenotype brefeldin A resistance phenotype carvomycin A resistance phenotype clarithromycin resistance phenotype dirithromycin resistance phenotype erythromycin resistance phenotype josamycin resistance phenotype latrunculin B resistance phenotype roxithromycin resistance phenotype spiramycin resistance phenotype telithromycin resistance phenotype troleandomycin resistance phenotype microbial_phenotype macrolide sensitivity phenotype rapamycin resistance phenotype OMP:0000321 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. macrolide resistance phenotype OMP:0000321 An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties. CHEBI:25106 OMP:MCC polyketide resistance phenotype CHEBI:26188 CHEBI:25105 macrolide antibiotic amphotericin B resistance phenotype CHEBI:2682 azithromycin resistance phenotype CHEBI:2955 bafilomycin A1 resistance phenotype CHEBI:22689 brasilinolide A resistance phenotype CHEBI:65514 brefeldin A resistance phenotype CHEBI:48080 clarithromycin resistance phenotype CHEBi:3732 dirithromycin resistance phenotype CHEBI:474014 erythromycin resistance phenotype CHEBI:25105 josamycin resistance phenotype CHEBI:31739 latrunculin B resistance phenotype CHEBI:49703 roxithromycin resistance phenotype CHEBI:48844 rapamycin resistance phenotype CHEBI:9168 siegele 2020-11-26T13:14:47Z microbial_phenotype OMP:0000322 cell length phenotype OMP:0000322 siegele 2020-07-26T17:35:24Z microbial_phenotype OMP:0000323 presence of cell area variability OMP:0000323 siegele 2020-11-26T13:14:47Z microbial_phenotype OMP:0000324 cell perimeter length phenotype OMP:0000324 siegele 2020-07-26T17:44:34Z microbial_phenotype OMP:0000325 presence of cell volume variability OMP:0000325 siegele 2020-11-26T13:14:47Z microbial_phenotype OMP:0000326 cell surface area phenotype OMP:0000326 siegele 2020-07-26T17:50:29Z microbial_phenotype OMP:0000327 presence of cell surface area variability OMP:0000327 siegele 2020-11-26T13:14:47Z microbial_phenotype OMP:0000328 cell volume phenotype OMP:0000328 siegele 2020-07-26T19:07:06Z microbial_phenotype OMP:0000329 presence of cell perimeter length variability OMP:0000329 siegele 2020-11-26T13:14:47Z microbial_phenotype OMP:0000330 cell surface area-to-volume ratio phenotype OMP:0000330 An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds. mchibucos 2012-11-02T02:02:58Z antifolate resistance phenotype aminopyrimidine sensitivity phenotype 5-flucytosine resistance phenotype diaveridine resistance phenotype iclaprim resistance phenotype piritrexim resistance phenotype pyrimethamine resistance phenotype trimethoprim resistance phenotype trimetrexate resistance phenotype microbial_phenotype OMP:0000331 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. aminopyrimidine resistance phenotype OMP:0000331 An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds. CHEBI:38338 OMP:DAS antifolate resistance phenotype CHEBI:73913 5-flucytosine resistance phenotype CHEBI:5100 diaveridine resistance phenotype CHEBI:123115 iclaprim resistance phenotype CHEBI:131724 pyrimethamine resistance phenotype CHEBI:8673 trimethoprim resistance phenotype CHEBI:45924 trimetrexate resistance phenotype CID:5583 siegele 2020-07-26T19:11:25Z microbial_phenotype OMP:0000332 presence of cell surface area-to-volume ratio variability OMP:0000332 4 pi area/(perimeter)^2 or 2 pi area/(perimeter)^2? defined differently in two places in paper siegele 2020-11-27T16:31:01Z microbial_phenotype OMP:0000333 cell circularity phenotype OMP:0000333 An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control. mchibucos 2012-11-02T02:04:38Z microbial_phenotype decreased sensitivity to antifolates OMP:0000334 increased resistance to aminopyrimidine OMP:0000334 An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control. OMP:DAS An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control. mchibucos 2012-11-02T02:04:58Z microbial_phenotype increased sensitivity to aminopyrimidine OMP:0000335 decreased resistance to aminopyrimidine OMP:0000335 An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control. OMP:DAS An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure. mchibucos 2012-11-02T02:06:13Z CHEBI:27933 amoxicillin resistance phenotype ampicillin resistance phenotype aztreonam resistance phenotype carbapenams resistance phenotype carbenicillin resistance phenotype cefaclor resistance phenotype cefoxitin resistance phenotype cefsulodin resistance phenotype ceftazidime resistance phenotype cephalosporins resistance phenotype cephaloxporin resistance phenotype cephamycin resistance phenotype monobactams resistance phenotype oxacillin resistance phenotype penicillin resistance phenotype microbial_phenotype beta-lactam sensitivity phenotype mecillinam resistance phenotype OMP:0000336 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. beta-lactam resistance phenotype OMP:0000336 An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure. CHEBI:35627 OMP:MCC CHEBI:27933 beta-lactam antibiotic amoxicillin resistance phenotype CHEBI:2676 ampicillin resistance phenotype CHEBI:28971 aztreonam resistance phenotype CHEBI:161680 carbapenams resistance phenotype CHEBI:64510 carbenicillin resistance phenotype CHEBI:3393 cefaclor resistance phenotype CHEBI:3478 cefoxitin resistance phenotype CHEBI:209807 cefsulodin resistance phenotype CHEBI:3507 ceftazidime resistance phenotype CHEBI:3508 cephamycin resistance phenotype CHEBI:55429 monobactams resistance phenotype CHEBI:50695 oxacillin resistance phenotype CHEBI:7809 penicillin resistance phenotype CHEBI:51356 mecillinam resistance phenotype CHEBI:51208 siegele 2020-07-26T19:23:30Z microbial_phenotype OMP:0000337 presence of cell circularity variability OMP:0000337 cell aspect ratio (diameter/length) siegele 2020-11-27T19:14:47Z microbial_phenotype OMP:0000338 cell aspect ratio phenotype OMP:0000338 siegele 2020-07-26T19:54:28Z microbial_phenotype OMP:0000339 presence of cell aspect ratio variability OMP:0000339 siegele 2020-07-26T19:58:18Z microbial_phenotype OMP:0000340 presence of cell division ratio variability OMP:0000340 A cell population phenotype where the trait is variability in cell shape within a microbial cell population. siegele 2020-11-27T19:18:22Z microbial_phenotype OMP:0000341 cell shape variability phenotype OMP:0000341 A cell population phenotype where the trait is variability in cell shape within a microbial cell population. OMP:das siegele 2020-07-27T16:05:18Z microbial_phenotype OMP:0000342 presence of nucleoid area variability OMP:0000342 A cell population phenotype where variability in cell shape is altered relative to a designated control. siegele 2020-11-27T19:21:14Z microbial_phenotype OMP:0000343 altered cell shape variability phenotype OMP:0000343 A cell population phenotype where variability in cell shape is altered relative to a designated control. OMP:das siegele 2020-11-27T19:47:09Z microbial_phenotype OMP:0000344 nucleoid area phenotype OMP:0000344 siegele 2020-11-27T20:14:46Z microbial_phenotype OMP:0000345 cell population growth yield phenotype OMP:0000345 siegele 2020-11-29T12:13:41Z microbial_phenotype OMP:0000346 nucleoid constriction during cell division phenotype OMP:0000346 siegele 2020-11-29T12:22:10Z microbial_phenotype OMP:0000347 This is a cell population average. altered nucleoid constriction during cell division OMP:0000347 siegele 2020-11-29T12:40:18Z microbial_phenotype OMP:0000348 correlation between nucleoid and cell constriction phenotype OMP:0000348 siegele 2020-11-29T13:03:32Z microbial_phenotype OMP:0000349 cell division during cell population growth phenotype OMP:0000349 population growth phenotype siegele 2020-11-29T13:09:01Z microbial_phenotype OMP:0000350 altered cell division during cell population growth OMP:0000350 siegele 2020-11-29T13:20:35Z microbial_phenotype OMP:0000351 altered nucleoid number phenotype OMP:0000351 siegele 2020-11-29T13:54:26Z microbial_phenotype OMP:0000352 timing of cell constriction phenotype OMP:0000352 siegele 2020-11-29T13:55:15Z microbial_phenotype OMP:0000353 timing of nucleoid separation phenotype OMP:0000353 siegele 2020-11-29T14:02:10Z microbial_phenotype OMP:0000354 altered timing of cell constriction OMP:0000354 siegele 2020-11-29T14:03:05Z microbial_phenotype OMP:0000355 altered timing of nucleoid separation OMP:0000355 siegele 2020-11-29T14:13:36Z microbial_phenotype OMP:0000356 decreased relative timing of cell constriction OMP:0000356 siegele 2020-11-29T14:13:36Z microbial_phenotype OMP:0000357 increased relative timing of cell constriction OMP:0000357 siegele 2020-11-29T14:19:27Z microbial_phenotype OMP:0000358 cell length variability phenotype OMP:0000358 siegele 2020-11-29T14:20:53Z microbial_phenotype OMP:0000359 cell diameter variability phenotype OMP:0000359 siegele 2020-11-29T14:21:45Z microbial_phenotype OMP:0000360 cell area variability phenotype OMP:0000360 siegele 2020-11-29T14:22:39Z microbial_phenotype OMP:0000361 cell volume variability phenotype OMP:0000361 siegele 2020-11-29T14:24:11Z microbial_phenotype OMP:0000362 cell surface area variability phenotype OMP:0000362 siegele 2020-11-29T14:24:52Z microbial_phenotype OMP:0000363 cell perimeter length variability phenotype OMP:0000363 siegele 2020-11-29T14:25:30Z microbial_phenotype OMP:0000364 cell surface area-to-volume ratio variability phenotype OMP:0000364 siegele 2020-11-29T14:26:57Z microbial_phenotype OMP:0000365 cell circularity variability phenotype OMP:0000365 siegele 2020-11-29T14:27:30Z microbial_phenotype OMP:0000366 cell aspect ratio variability phenotype OMP:0000366 siegele 2020-11-29T14:30:57Z microbial_phenotype OMP:0000367 nucleoid area variability phenotype OMP:0000367 siegele 2020-11-29T14:33:05Z microbial_phenotype OMP:0000368 cell division ratio variability phenotype OMP:0000368 siegele 2020-12-01T21:00:29Z microbial_phenotype OMP:0000369 internalization by macrophage phenotype OMP:0000369 siegele 2020-12-01T21:06:40Z microbial_phenotype OMP:0000370 presence of internalization by macrophage OMP:0000370 siegele 2020-12-01T21:06:40Z microbial_phenotype OMP:0000371 absence of internalization by macrophage OMP:0000371 siegele 2020-12-01T21:06:40Z microbial_phenotype OMP:0000372 altered internalization by macrophage OMP:0000372 siegele 2020-12-01T21:06:40Z microbial_phenotype OMP:0000373 increased internalization by macrophage OMP:0000373 siegele 2020-12-01T21:06:40Z microbial_phenotype OMP:0000374 decreased internalization by macrophage OMP:0000374 siegele 2020-12-01T21:06:40Z microbial_phenotype OMP:0000375 abolished internalization by macrophage OMP:0000375 A response to stress phenotype related to how exposure of a microbial cell or cells to a small decrease in pH affects siegele 2020-12-27T00:51:04Z microbial_phenotype OMP:0000376 acid tolerance response phenotype OMP:0000376 siegele 2020-12-27T00:52:03Z microbial_phenotype OMP:0000377 absence of acid tolerance response OMP:0000377 siegele 2020-12-27T00:52:03Z microbial_phenotype OMP:0000378 altered acid tolerance response OMP:0000378 siegele 2020-12-27T00:52:03Z microbial_phenotype OMP:0000379 presence of acid tolerance response OMP:0000379 siegele 2020-12-27T00:53:04Z microbial_phenotype OMP:0000380 decreased acid tolerance response OMP:0000380 siegele 2020-12-27T00:53:04Z microbial_phenotype OMP:0000381 increased acid tolerance response OMP:0000381 siegele 2020-12-27T00:53:11Z microbial_phenotype OMP:0000382 abolished acid tolerance response OMP:0000382 A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self. siegele 2021-03-29T16:47:35Z <new synonym> microbial_phenotype OMP:0000383 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell-cell self recognition phenotype OMP:0000383 A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self. OMP:das PMID:18621670 siegele 2021-03-29T16:49:55Z microbial_phenotype OMP:0000384 absence of cell-cell self recognition OMP:0000384 A cell-cell self-recognition phenotype where cells of a microbial strain recognizes self and different populations of the same strain will merge when grown on solid medium. siegele 2021-03-29T16:49:55Z microbial_phenotype OMP:0000385 presence of cell-cell self recognition OMP:0000385 siegele 2021-03-29T16:49:55Z aberrant cell-cell self recognition microbial_phenotype OMP:0000386 altered cell-cell self recognition OMP:0000386 aberrant cell-cell self recognition DDPHENO:0000122 siegele 2021-03-29T16:52:06Z microbial_phenotype OMP:0000387 increased cell-cell self recognition OMP:0000387 siegele 2021-03-29T16:52:06Z microbial_phenotype OMP:0000388 decreased cell-cell self recognition OMP:0000388 siegele 2021-03-29T16:52:06Z microbial_phenotype OMP:0000389 abolished cell-cell self recognition OMP:0000389 siegele 2021-04-13T14:45:21Z microbial_phenotype OMP:0000390 presence of transcription of gene or operon OMP:0000390 siegele 2021-04-13T14:46:06Z microbial_phenotype OMP:0000391 absence of transcription of gene or operon OMP:0000391 An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds. mchibucos 2012-11-04T02:52:01Z microbial_phenotype OMP:0000435 resistant to aminopyrimidine OMP:0000435 An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds. OMP:DAS An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds. mchibucos 2012-11-04T02:52:18Z microbial_phenotype sensitivity to aminopyrimidine OMP:0000436 not resistant to aminopyrimidine OMP:0000436 An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds. OMP:DAS An antimicrobial compound resistance phenotype where a cell or cells are resistant to ampicillin. OMP:0006047 mchibucos 2012-11-04T02:52:48Z microbial_phenotype OMP:0000437 This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, when possible, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into the annotation extension column. In cases where a natural grouping doesn't exist, the user should use "OMP:0007876 resistant to an antimicrobial agent" and put the CHEBI ID (or other identifier) into the annotation extension column. resistant to ampicillin true OMP:0000437 An antimicrobial compound resistance phenotype where a cell or cells are resistant to penicillin. OMP:0006047 mchibucos 2012-11-04T02:55:41Z microbial_phenotype OMP:0000445 This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into column 16. resistant to penicillin true OMP:0000445 A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts. mchibucos 2013-05-23T01:35:26Z micronutrient utilization microbial_phenotype OMP:0000450 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. trace element utilization phenotype OMP:0000450 A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts. OMP:JCH An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring. mchibucos 2013-05-23T01:37:06Z haem microbial_phenotype OMP:0000451 heme utilization phenotype OMP:0000451 An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring. OMP:JCH An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control. mchibucos 2013-05-23T01:37:51Z microbial_phenotype OMP:0000452 increased heme utilization OMP:0000452 An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control. OMP:JCH An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control. mchibucos 2013-05-23T01:39:39Z microbial_phenotype OMP:0000453 decreased heme utilization OMP:0000453 An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control. OMP:JCH A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron. mchibucos 2013-05-23T01:40:40Z microbial_phenotype OMP:0000454 absence of heme utilization OMP:0000454 A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron. OMP:JCH An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure. mchibucos 2013-05-23T01:53:57Z alkaloid sensitivity phenotype caffeine resistance phenotype theophylline resistance phenotype microbial_phenotype OMP:0000455 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. alkaloid chemical resistance phenotype OMP:0000455 An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure. CHEBI:22315 OMP:WAM theophylline resistance phenotype CHEBI:28177 An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7. mchibucos 2013-05-23T01:54:51Z caffeine sensitivity phenotype microbial_phenotype OMP:0000456 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. caffeine resistance phenotype OMP:0000456 An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7. CHEBI:27732 OMP:WAM A caffeine resistance phenotype where an organism or cell is resistant to caffeine. mchibucos 2013-05-23T01:55:13Z microbial_phenotype OMP:0000457 resistant to caffeine OMP:0000457 A caffeine resistance phenotype where an organism or cell is resistant to caffeine. OMP:WAM A caffeine resistance phenotype where an organism or cell is sensitive to caffeine. mchibucos 2013-05-23T01:55:34Z microbial_phenotype caffeine sensitivity OMP:0000458 not resistant to caffeine OMP:0000458 A caffeine resistance phenotype where an organism or cell is sensitive to caffeine. OMP:WAM An altered caffeine resistance phenotype where resistance is increased relative to a designated control. mchibucos 2013-05-23T01:58:11Z microbial_phenotype decreased caffeine sensitivity OMP:0000459 increased caffeine resistance OMP:0000459 An altered caffeine resistance phenotype where resistance is increased relative to a designated control. OMP:WAM An altered caffeine resistance phenotype where resistance is decreased relative to a designated control. mchibucos 2013-05-23T01:58:55Z microbial_phenotype increased caffeine sensitivity OMP:0000460 decreased caffeine resistance OMP:0000460 An altered caffeine resistance phenotype where resistance is decreased relative to a designated control. OMP:WAM A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall. siegele 2013-08-22T01:43:06Z microbial_phenotype OMP:0000461 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. outer membrane phenotype OMP:0000461 A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall. ISBN:9780073402406 OMP:DAS An outer membrane phenotype where a cell or cells possess an outer membrane. siegele 2013-08-22T01:47:25Z Diderm Gram negative microbial_phenotype mycolate outer membrane OMP:0000462 presence of an outer membrane OMP:0000462 An outer membrane phenotype where a cell or cells possess an outer membrane. OMP:DAS A pilus phenotype where there is an increased number of pili per cell relative to a designated control. siegele 2013-08-22T01:48:57Z microbial_phenotype OMP:0000463 increased number of pili OMP:0000463 A pilus phenotype where there is an increased number of pili per cell relative to a designated control. OMP:DAS An outer membrane phenotype where a cell or cells lack an outer membrane. siegele 2013-08-22T01:53:29Z microbial_phenotype OMP:0000464 absence of an outer membrane OMP:0000464 An outer membrane phenotype where a cell or cells lack an outer membrane. OMP:DAS An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control. mchibucos 2012-11-02T01:20:31Z microbial_phenotype OMP:0000500 decreased aerotaxis OMP:0000500 An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control. OMP:DAS An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control. mchibucos 2012-11-02T01:21:21Z microbial_phenotype OMP:0000502 increased aerotaxis OMP:0000502 An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control. OMP:DAS An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control. mchibucos 2012-11-02T01:22:28Z microbial_phenotype OMP:0000503 decreased chemotaxis OMP:0000503 An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control. mchibucos 2012-11-02T01:23:12Z microbial_phenotype OMP:0000505 increased chemotaxis OMP:0000505 An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control. OMP:DAS An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control. wmeza 2013-08-22T05:57:07Z microbial_phenotype OMP:0001001 Increased negative supercoiling OMP:0001001 An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control. OMP:WAM An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control. wmeza 2013-08-22T05:57:56Z microbial_phenotype OMP:0001002 decreased negative supercoiling OMP:0001002 An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control. OMP:WAM An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid. Jesus 2016-01-26T15:01:05Z GO:0004620 microbial_phenotype OMP:0005000 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. phospholipase activity phenotype OMP:0005000 An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid. OMP:JG GO:0004620 phospholipase activity A caffeine resistance phenotype that is altered relative to a designated control. wmeza 2014-07-23T12:18:08Z microbial_phenotype OMP:0005001 altered caffeine resistance OMP:0005001 A caffeine resistance phenotype that is altered relative to a designated control. OMP:WAM A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment. wmeza 2013-09-03T01:06:05Z temperature requirement for growth microbial_phenotype OMP:0005002 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. temperature effects on population growth phenotype OMP:0005002 A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment. OMP:WAM A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C. wmeza 2013-09-03T01:29:51Z microbial_phenotype OMP:0005003 hyperthermophile OMP:0005003 A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C. ISBN:9780073402406 OMP:WAM A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C. wmeza 2013-09-03T01:36:26Z microbial_phenotype OMP:0005004 thermophile OMP:0005004 A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C. ISBN:9780073402406 OMP:WAM A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C. wmeza 2013-09-04T13:24:06Z microbial_phenotype OMP:0005005 mesophile OMP:0005005 A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C. ISBN:9780073402406 OMP:WAM A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C. wmeza 2013-09-04T13:38:56Z microbial_phenotype OMP:0005006 psychrotroph OMP:0005006 A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C. ISBN:9780073402406 OMP:WAM A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower. wmeza 2013-09-04T13:40:27Z microbial_phenotype OMP:0005007 psychrophile OMP:0005007 A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower. ISBN:9780073402406 OMP:WAM A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment. wmeza 2013-09-04T13:57:28Z microbial_phenotype OMP:0005008 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. pH effects on population growth phenotype OMP:0005008 A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment. OMP:WAM A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5. wmeza 2013-09-04T16:18:28Z microbial_phenotype OMP:0005009 acidophile OMP:0005009 A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5. ISBN:9780073402406 OMP:WAM A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0. wmeza 2013-09-04T16:21:50Z microbial_phenotype OMP:0005010 neutrophile OMP:0005010 A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0. ISBN:780073402406 OMP:WAM A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5. wmeza 2013-09-04T16:24:24Z microbial_phenotype OMP:0005011 alkaliphile OMP:0005011 A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5. ISBN:9780073402406 OMP:WAM A population growth range phenotype related to how growth of a microbial population is affected by pressure. wmeza 2013-09-09T11:42:28Z microbial_phenotype OMP:0005012 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. pressure effects on population growth phenotype OMP:0005012 A population growth range phenotype related to how growth of a microbial population is affected by pressure. OMP:WAM A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment. wmeza 2013-09-09T11:43:45Z microbial_phenotype OMP:0005013 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. solute and water activity effects on population growth phenotype OMP:0005013 A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment. OMP:WAM A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure. wmeza 2013-09-09T11:49:53Z microbial_phenotype barophilic growth OMP:0005014 piezophilic growth OMP:0005014 A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure. ISBN:9780073402406 OMP:WAM barophilic growth ISBN:9780073402406 A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration. wmeza 2013-09-09T13:05:24Z microbial_phenotype OMP:0005015 osmotolerant growth OMP:0005015 A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration. ISBN:9780073402406 OMP:WAM A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M. wmeza 2013-09-09T13:06:03Z microbial_phenotype OMP:0005016 halophilic growth OMP:0005016 A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M. ISBN:9780073402406 OMP:WAM A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage. wmeza 2013-09-18T18:35:30Z microbial_phenotype DNA damage response OMP:0005017 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. SOS response phenotype OMP:0005017 A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage. ISBN:9781615831838 OMP:WAM An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control. wmeza 2013-09-19T13:39:34Z microbial_phenotype OMP:0005018 altered SOS response phenotype OMP:0005018 An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control. OMP:WAM A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity. Jesus 2016-01-26T15:16:42Z microbial_phenotype OMP:0005019 absence of phospholipase activity OMP:0005019 A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity. OMP:JG An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control. wmeza 2013-09-19T15:54:21Z microbial_phenotype OMP:0005020 increased basal expression of the SOS response OMP:0005020 An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control. OMP:WAM An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control. wmeza 2013-09-19T15:55:16Z microbial_phenotype OMP:0005021 decreased basal expression of the SOS response OMP:0005021 An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control. OMP:WAM An SOS response phenotype where a cell or cells lack an SOS response. wmeza 2013-09-19T16:25:09Z microbial_phenotype OMP:0005022 absence of an SOS response OMP:0005022 An SOS response phenotype where a cell or cells lack an SOS response. OMP:WAM An SOS response phenotype where a cell or cells exhibit an SOS response. wmeza 2013-09-19T16:25:30Z microbial_phenotype OMP:0005023 presence of an SOS response OMP:0005023 An SOS response phenotype where a cell or cells exhibit an SOS response. OMP:WAM An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control. wmeza 2013-09-20T13:01:05Z microbial_phenotype OMP:0005024 increased induced expression of the SOS response OMP:0005024 An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control. OMP:WAM An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control. wmeza 2013-09-20T13:26:46Z microbial_phenotype OMP:0005025 decreased induced expression of the SOS response OMP:0005025 An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control. OMP:WAM A phospholipase activity phenotype where an organism exhibits phospholipase activity. Jesus 2016-01-26T15:17:15Z microbial_phenotype OMP:0005026 presence of phospholipase activity OMP:0005026 A phospholipase activity phenotype where an organism exhibits phospholipase activity. OMP:JG A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress. wmeza 2013-09-20T15:00:09Z microbial_phenotype OMP:0005027 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. stress-induced mutagenesis phenotype OMP:0005027 A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress. OMP:WAM PMID:17917874 PMID:3045565 A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control. Jesus 2016-01-26T15:17:51Z microbial_phenotype OMP:0005028 altered phospholipase activity OMP:0005028 A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control. OMP:JG A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control. wmeza 2014-07-23T17:05:20Z microbial_phenotype OMP:0005029 altered tetracycline resistance OMP:0005029 A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control. OMP:WAM An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control. wmeza 2013-09-25T15:57:03Z microbial_phenotype OMP:0005030 increased stress-induced mutagenesis OMP:0005030 An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control. OMP:WAM An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control. wmeza 2013-09-25T15:57:46Z microbial_phenotype OMP:0005031 decreased stress-induced mutagenesis OMP:0005031 An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control. OMP:WAM A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis. wmeza 2013-09-25T15:59:12Z microbial_phenotype OMP:0005032 presence of stress-induced mutagenesis OMP:0005032 A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis. OMP:WAM A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis. wmeza 2013-09-25T18:20:22Z microbial_phenotype OMP:0005033 absence of stress-induced mutagenesis OMP:0005033 A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis. OMP:WAM A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control. wmeza 2014-07-23T17:13:45Z microbial_phenotype OMP:0005034 altered quinolone resistance OMP:0005034 A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control. OMP:WAM A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. wmeza 2013-10-15T17:51:12Z microbial_phenotype OMP:0005035 quick-stop DNA replication OMP:0005035 A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. OMP:JHU OMP:WAM A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift. wmeza 2013-10-15T17:51:40Z microbial_phenotype OMP:0005036 slow-stop DNA replication OMP:0005036 A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift. OMP:JHU OMP:WAM A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication. wmeza 2013-10-15T18:53:12Z microbial_phenotype OMP:0005037 origin-independent replication OMP:0005037 A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication. OMP:WAM wmeza 2013-10-15T18:59:38Z microbial_phenotype OMP:0005038 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to oxidative stress phenotype OMP:0005038 A stress response phenotype dealing with the response to cyclic freezing and melting. wmeza 2013-10-15T18:59:52Z microbial_phenotype OMP:0005039 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to freeze/thaw stress phenotype OMP:0005039 A stress response phenotype dealing with the response to cyclic freezing and melting. ISBN:1555810489 OMP:WAM A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5. wmeza 2013-10-16T17:14:52Z microbial_phenotype OMP:0005040 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to acid pH stress phenotype OMP:0005040 A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5. OMP:WAM A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5. wmeza 2013-10-16T17:15:59Z microbial_phenotype OMP:0005041 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to alkaline pH stress phenotype OMP:0005041 A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5. OMP:WAM A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA. wmeza 2013-10-18T18:34:37Z microbial_phenotype OMP:0005042 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. homologous recombination phenotype OMP:0005042 A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA. ISBN:9780471768654 OMP:WAM A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA. wmeza 2013-10-18T18:34:58Z microbial_phenotype OMP:0005043 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. site-specific recombination phenotype OMP:0005043 A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA. ISBN:9780471768654 OMP:WAM A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control. wmeza 2014-07-24T13:27:41Z microbial_phenotype OMP:0005044 altered mitotic recombination OMP:0005044 A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control. OMP:WAM A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. wmeza 2013-10-18T18:38:05Z microbial_phenotype OMP:0005045 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mitotic recombination phenotype OMP:0005045 A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. ISBN:9780198529170 OMP:WAM A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation. wmeza 2013-10-18T18:38:43Z GO:0016458 microbial_phenotype OMP:0005046 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. gene silencing phenotype OMP:0005046 A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation. GO:0016458 OMP:WAM GO:0016458 gene silencing A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. wmeza 2013-10-18T18:39:04Z GO::0007059 microbial_phenotype OMP:0005047 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chromosome segregation phenotype OMP:0005047 A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. GO:0007059 OMP:WAM GO::0007059 chromosome segregation A genetic material phenotype dealing with the frequency of mutations. wmeza 2013-10-18T18:39:27Z microbial_phenotype OMP:0005048 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. mutation frequency phenotype OMP:0005048 A genetic material phenotype dealing with the frequency of mutations. ISBN:9780198529170 OMP:WAM A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control. wmeza 2013-10-23T19:46:15Z microbial_phenotype OMP:0005049 increased frequency of homologous recombination OMP:0005049 A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control. OMP:WAM A homologous recombination phenotype where homologous recombination is decreased relative to a designated control. wmeza 2013-10-24T12:52:41Z microbial_phenotype OMP:0005050 decreased frequency of homologous recombination OMP:0005050 A homologous recombination phenotype where homologous recombination is decreased relative to a designated control. OMP:WAM A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination. wmeza 2013-10-25T12:21:41Z microbial_phenotype OMP:0005051 presence of homologous recombination OMP:0005051 A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination. OMP:WAM A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination. wmeza 2013-10-25T12:22:04Z microbial_phenotype OMP:0005052 absence of homologous recombination OMP:0005052 A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination. OMP:WAM An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control. wmeza 2014-07-30T12:34:21Z microbial_phenotype OMP:0005053 altered induced expression of the SOS response OMP:0005053 An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control. OMP:WAM An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control. wmeza 2014-07-30T12:58:59Z microbial_phenotype OMP:0005054 altered basal expression of the SOS response OMP:0005054 An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control. OMP:WAM A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control. wmeza 2013-10-29T13:14:25Z microbial_phenotype OMP:0005055 increased frequency of site-specific recombination OMP:0005055 A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control. OMP:WAM A site specific recombination phenotype where site specific recombination is decreased relative to a designated control. wmeza 2013-10-29T13:15:06Z microbial_phenotype OMP:0005056 decreased frequency of site-specific recombination OMP:0005056 A site specific recombination phenotype where site specific recombination is decreased relative to a designated control. OMP:WAM A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination. wmeza 2013-10-29T13:15:28Z microbial_phenotype OMP:0005057 absence of site-specific recombination OMP:0005057 A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination. OMP:WAM A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination. wmeza 2013-10-29T13:20:16Z microbial_phenotype OMP:0005058 presence of site-specific recombination OMP:0005058 A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination. OMP:WAM A genetic material phenotype dealing with DNA sequences that change positions within the genome. wmeza 2013-10-30T18:35:34Z APO:0000047 GO:0032196 microbial_phenotype OMP:0005059 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. transposable element transposition phenotype OMP:0005059 A genetic material phenotype dealing with DNA sequences that change positions within the genome. ISBN:9780198529170 OMP:WAM APO:0000047 transposable element transposition GO:0032196 transposition An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control. wmeza 2013-11-04T18:09:09Z microbial_phenotype OMP:0005060 decreased frequency of chromosome missegregation OMP:0005060 An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control. OMP:WAM An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control. wmeza 2013-11-04T18:09:38Z increased aneuploidy microbial_phenotype OMP:0005061 increased frequency of chromosome missegregation OMP:0005061 An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control. OMP:WAM An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control. Jesus 2016-01-26T15:18:34Z microbial_phenotype OMP:0005062 increased phospholipase activity OMP:0005062 An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control. OMP:JG An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control. Jesus 2016-01-26T15:19:23Z microbial_phenotype OMP:0005063 decreased phospholipase activity OMP:0005063 An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control. OMP:JG An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control. wmeza 2013-11-04T18:21:37Z microbial_phenotype OMP:0005064 increased frequency of gene silencing OMP:0005064 An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control. OMP:WAM An gene silencing phenotype where gene silencing is decreased relative to a designated control. wmeza 2013-11-04T18:21:56Z microbial_phenotype OMP:0005065 decreased frequency of gene silencing OMP:0005065 An gene silencing phenotype where gene silencing is decreased relative to a designated control. OMP:WAM A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing. wmeza 2013-11-04T18:33:14Z microbial_phenotype OMP:0005066 absence of gene silencing OMP:0005066 A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing. OMP:WAM A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing. wmeza 2013-11-04T18:34:20Z microbial_phenotype OMP:0005067 presence of gene silencing OMP:0005067 A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing. OMP:WAM An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control. wmeza 2013-11-08T17:05:44Z microbial_phenotype OMP:0005068 increased mutation frequency OMP:0005068 An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control. OMP:WAM An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control. wmeza 2013-11-08T17:11:14Z microbial_phenotype OMP:0005069 decreased mutation frequency OMP:0005069 An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control. OMP:WAM An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control. wmeza 2013-11-08T17:11:59Z microbial_phenotype OMP:0005070 increased mitotic recombination OMP:0005070 An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control. OMP:WAM An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control. wmeza 2013-11-08T17:12:27Z microbial_phenotype OMP:0005071 decreased mitotic recombination OMP:0005071 An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control. OMP:WAM A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination. wmeza 2013-11-08T17:35:56Z microbial_phenotype OMP:0005072 absence of mitotic recombination OMP:0005072 A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination. OMP:WAM A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination. wmeza 2013-11-08T17:36:20Z microbial_phenotype OMP:0005073 presence of mitotic recombination OMP:0005073 A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination. OMP:WAM A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control. wmeza 2013-11-11T13:41:50Z microbial_phenotype OMP:0005074 increased rate of transposable element transposition OMP:0005074 A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control. OMP:WAM A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control. wmeza 2013-11-11T13:42:44Z microbial_phenotype OMP:0005075 decreased rate of transposable element transposition OMP:0005075 A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control. OMP:WAM An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control. wmeza 2013-11-15T18:09:55Z microbial_phenotype decreased acidic pH sensitivity OMP:0005076 increased resistance to acidic pH stress OMP:0005076 An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control. OMP:WAM decreased acidic pH sensitivity OMP:WAM An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control. wmeza 2013-11-15T18:12:48Z microbial_phenotype increased sensitivity to acid pH stress OMP:0005077 decreased resistance to acidic pH stress OMP:0005077 An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control. OMP:WAM increased sensitivity to acid pH stress OMP:WAM An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control. wmeza 2013-11-15T18:14:08Z microbial_phenotype decreased alkaline pH sensitivity OMP:0005078 increased resistance to alkaline pH stress OMP:0005078 An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control. OMP:WAM decreased alkaline pH sensitivity OMP:WAM An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control. wmeza 2013-11-15T18:16:03Z increased alkaline pH sensitivity microbial_phenotype OMP:0005079 decreased resistance to alkaline pH stress OMP:0005079 An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control. OMP:WAM increased alkaline pH sensitivity OMP:WAM A stress response phenotype dealing with the removal or immobilisation of water. wmeza 2013-11-18T11:42:37Z microbial_phenotype OMP:0005080 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to dessication stress phenotype OMP:0005080 A stress response phenotype dealing with the removal or immobilisation of water. ISBN:9780471138228 OMP:WAM A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths. wmeza 2013-11-18T11:50:57Z microbial_phenotype radiation resistance OMP:0005081 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to radiation stress phenotype OMP:0005081 A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths. OMP:WAM A stress response phenotype dealing with the resistance response to normally lethal high temperature levels. wmeza 2013-11-18T12:22:55Z microbial_phenotype OMP:0005082 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to thermotolerance stress phenotype OMP:0005082 A stress response phenotype dealing with the resistance response to normally lethal high temperature levels. OMP:WAM A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation. wmeza 2013-11-22T15:55:45Z microbial_phenotype OMP:0005083 response to ionizing radiation phenotype OMP:0005083 A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation. ISBN:9780471387350 OMP:WAM A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm). wmeza 2013-11-22T15:56:27Z microbial_phenotype OMP:0005084 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. resistance to UV radiation phenotype OMP:0005084 A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm). ISO:21348 OMP:WAM A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation. wmeza 2013-11-22T16:04:42Z microbial_phenotype OMP:0005085 resistance to gamma-ray radiation phenotype OMP:0005085 A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation. OMP:WAM A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays. wmeza 2013-11-22T16:05:02Z microbial_phenotype OMP:0005086 resistance to x-ray radiation OMP:0005086 A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays. OMP:WAM An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control. wmeza 2013-12-06T14:14:31Z microbial_phenotype decreased dessication sensitivity OMP:0005087 increased resistance to dessication stress OMP:0005087 An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control. OMP:WAM decreased dessication sensitivity OMP:WAM An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control. wmeza 2013-12-06T14:15:06Z microbial_phenotype increased dessication sensitivity OMP:0005088 decreased resistance to dessication stress OMP:0005088 An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control. OMP:WAM increased dessication sensitivity OMP:WAM An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control. wmeza 2013-12-06T14:28:16Z microbial_phenotype OMP:0005089 increased resistance to freeze/thawing stress OMP:0005089 An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control. OMP:WAM An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control. wmeza 2013-12-06T14:28:46Z microbial_phenotype decreased freeze/thaw sensitivity. OMP:0005090 decreased resistance to freeze/thawing stress OMP:0005090 An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control. OMP:WAM decreased freeze/thaw sensitivity. OMP:WAM An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control. wmeza 2013-12-06T17:57:46Z decreased sensitivity to oxidative stress microbial_phenotype OMP:0005091 increased resistance to oxidative stress OMP:0005091 An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control. OMP:WAM decreased sensitivity to oxidative stress OMP:WAM An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control. wmeza 2013-12-06T17:59:14Z increased sensitivity to oxidative stress microbial_phenotype OMP:0005092 decreased resistance to oxidative stress OMP:0005092 An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control. OMP:WAM increased sensitivity to oxidative stress OMP:WAM An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control. wmeza 2013-12-17T13:05:40Z decreased gamma ray sensitivity microbial_phenotype OMP:0005093 increased resistance to gamma-ray radiation OMP:0005093 An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control. OMP:WAM decreased gamma ray sensitivity OMP:WAM An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control. wmeza 2013-12-17T13:06:05Z increased gamma ray sensitivity microbial_phenotype OMP:0005094 decreased resistance to gamma-ray radiation OMP:0005094 An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control. OMP:WAM increased gamma ray sensitivity OMP:WAM An altered x-ray radiation phenotype were resistance is increased relative to a designated control. wmeza 2013-12-17T13:26:43Z decreased x-ray sensitivity microbial_phenotype OMP:0005095 increased resistance to x-ray radiation OMP:0005095 An altered x-ray radiation phenotype were resistance is increased relative to a designated control. OMP:WAM decreased x-ray sensitivity OMP:WAM An altered x-ray radiation phenotype where resistance is decreased relative to a designated control. wmeza 2013-12-17T13:28:20Z increased x-ray sensitivity microbial_phenotype OMP:0005096 decreased resistance to x-ray radiation OMP:0005096 An altered x-ray radiation phenotype where resistance is decreased relative to a designated control. OMP:WAM increased x-ray sensitivity OMP:WAM An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control. wmeza 2013-12-17T13:41:53Z microbial_phenotype decreased UV sensitivity OMP:0005097 increased resistance to UV radiation OMP:0005097 An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control. OMP:WAM decreased UV sensitivity OMP:WAM An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control. wmeza 2013-12-17T13:43:32Z microbial_phenotype increased UV sensitivity OMP:0005098 decreased resistance to UV radiation OMP:0005098 An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control. OMP:WAM increased UV sensitivity OMP:WAM A stress response phenotype dealing with the response to deprivation of nourishment. wmeza 2014-01-21T12:13:04Z microbial_phenotype OMP:0005099 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to starvation stress phenotype OMP:0005099 A stress response phenotype dealing with the response to deprivation of nourishment. GO:0009267 OMP:WAM A growth phenotype where growth is dependent on the presence of a macrolide. wmeza 2014-02-11T11:53:51Z erythromycin dependent growth microbial_phenotype OMP:0005100 macrolide dependent growth OMP:0005100 A growth phenotype where growth is dependent on the presence of a macrolide. OMP:WAM A growth phenotype where growth is dependent on the presence of an aminoglycoside. wmeza 2014-02-11T11:54:51Z streptomycin dependent growth microbial_phenotype OMP:0005101 aminoglycoside dependent growth OMP:0005101 A growth phenotype where growth is dependent on the presence of an aminoglycoside. OMP:WAM An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control. wmeza 2014-04-17T10:54:45Z microbial_phenotype OMP:0005102 increased enzymatic activity OMP:0005102 An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control. OMP:WAM An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control. wmeza 2014-04-17T10:55:05Z microbial_phenotype OMP:0005103 decreased catalytic activity OMP:0005103 An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control. OMP:WAM A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished. wmeza 2014-07-17T13:11:33Z microbial_phenotype OMP:0005104 abolished resistance to dessication stress OMP:0005104 A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished. OMP:WAM A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished. wmeza 2014-07-17T14:10:28Z microbial_phenotype OMP:0005105 abolished resistance to freeze/thawing stress OMP:0005105 A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished. OMP:WAM A lifespan phenotype where lifespan is increased relative to a designated control. wmeza 2014-05-07T12:39:57Z microbial_phenotype OMP:0005106 increased lifespan OMP:0005106 A lifespan phenotype where lifespan is increased relative to a designated control. OMP:WAM An altered lifespan phenotype where the lifespan is decreased relative to a designated control. wmeza 2014-05-07T12:40:14Z microbial_phenotype OMP:0005107 decreased lifespan OMP:0005107 An altered lifespan phenotype where the lifespan is decreased relative to a designated control. OMP:WAM MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control. wmeza 2014-07-02T18:39:12Z OMP:0007664 increased cell width microbial_phenotype OMP:0005108 increased cell diameter OMP:0005108 MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control. OMP:DAS OMP:WAM MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control. wmeza 2014-07-02T18:46:00Z OMP:0007665 decreased cell width microbial_phenotype OMP:0005109 decreased cell diameter OMP:0005109 MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control. OMP:DAS OMP:WAM A decreased phospholipase activity phenotype where phospholipase activity is abolished. Jesus 2016-01-26T15:19:53Z microbial_phenotype OMP:0005110 abolished phospholipase activity OMP:0005110 A decreased phospholipase activity phenotype where phospholipase activity is abolished. OMP:JG A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host. Jesus 2016-02-02T13:52:43Z APO:0000324 microbial_phenotype OMP:0005111 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. resistance to killing by host phenotype OMP:0005111 A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host. OMP:JG APO:0000324 resistance to killing by host cells A stress response phenotype dealing with the response to exposure to SDS-EDTA. wmeza 2014-07-07T13:21:43Z microbial_phenotype OMP:0005112 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. response to SDS-EDTA stress phenotype OMP:0005112 A stress response phenotype dealing with the response to exposure to SDS-EDTA. OMP:WAM An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control. wmeza 2014-07-07T13:50:24Z microbial_phenotype OMP:0005113 decreased resistance to SDS-EDTA stress OMP:0005113 An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control. OMP:WAM An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control. wmeza 2014-07-07T13:50:45Z microbial_phenotype OMP:0005114 increased resistance to SDS-EDTA stress OMP:0005114 An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control. OMP:WAM A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division. wmeza 2014-08-07T14:54:52Z GO:0007049 cell division cycle microbial_phenotype cell division phenotype OMP:0005115 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell cycle phenotype OMP:0005115 A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division. GO:0007049 OMP:WAM GO:0007049 cell cycle A microbial phenotype related to a biological process that involves two or more organisms of the same or different species. wmeza 2014-07-08T17:10:17Z GO:0051704 microbial_phenotype OMP:0005116 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. multi-organism process phenotype OMP:0005116 A microbial phenotype related to a biological process that involves two or more organisms of the same or different species. GO:0051704 OMP:DAS GO:0051704 multi-organism process A hemolysis test phenotype where a cell or cells causes hemolysis. wmeza 2014-07-08T17:55:17Z microbial_phenotype OMP:0005117 presence of hemolysis OMP:0005117 A hemolysis test phenotype where a cell or cells causes hemolysis. OMP:WAM A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control. wmeza 2014-07-11T12:55:53Z microbial_phenotype OMP:0005118 altered resistance to acidic pH stress phenotype OMP:0005118 A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control. OMP:WAM A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control. wmeza 2014-07-11T12:58:56Z microbial_phenotype OMP:0005119 altered resistance to alkaline pH stress phenotype OMP:0005119 A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control. OMP:WAM A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control. wmeza 2014-07-11T12:59:47Z microbial_phenotype OMP:0005120 altered resistance to dessication stress phenotype OMP:0005120 A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control. OMP:WAM A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control. wmeza 2014-07-11T13:00:23Z microbial_phenotype OMP:0005121 altered resistance to freeze/thaw stress OMP:0005121 A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control. OMP:JCH A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control. wmeza 2014-07-11T13:03:36Z microbial_phenotype OMP:0005122 altered resistance to oxidative stress OMP:0005122 A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control. OMP:WAM A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control. wmeza 2014-07-11T13:16:15Z microbial_phenotype OMP:0005123 altered resistance to gamma-ray radiation OMP:0005123 A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control. OMP:WAM A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control. wmeza 2014-07-11T13:16:47Z microbial_phenotype OMP:0005124 altered resistance to x-ray radiation OMP:0005124 A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control. OMP:WAM A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control. wmeza 2014-07-11T13:56:51Z microbial_phenotype OMP:0005125 altered UV-radiation resistance OMP:0005125 A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control. OMP:WAM An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control. wmeza 2014-07-11T13:57:22Z microbial_phenotype OMP:0005126 altered resistance to SDS-EDTA stress OMP:0005126 An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control. OMP:WAM A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished. wmeza 2014-07-15T16:46:17Z microbial_phenotype OMP:0005127 abolished resistance to acidic pH stress OMP:0005127 A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished. OMP:WAM A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished. wmeza 2014-07-15T17:31:56Z microbial_phenotype OMP:0005128 abolished resistance to alkaline pH stress OMP:0005128 A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished. OMP:WAM A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control. wmeza 2014-07-16T12:36:13Z microbial_phenotype OMP:0005129 altered biofilm formation OMP:0005129 A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control. OMP:WAM An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control. wmeza 2014-07-16T17:48:24Z microbial_phenotype OMP:0005130 altered enzymatic activity OMP:0005130 An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control. OMP:JCH A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished. wmeza 2014-07-17T14:18:37Z microbial_phenotype OMP:0005131 abolished resistance to oxidative stress OMP:0005131 A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished. OMP:WAM A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished. wmeza 2014-07-17T14:23:39Z microbial_phenotype OMP:0005132 abolished resistance to gamma ray radiation OMP:0005132 A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished. OMP:WAM A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished. wmeza 2014-07-17T14:28:44Z microbial_phenotype OMP:0005133 abolished resistance to x-ray radiation OMP:0005133 A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished. OMP:WAM A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished. wmeza 2014-07-17T17:22:15Z microbial_phenotype OMP:0005134 abolished resistance to UV radiation OMP:0005134 A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished. OMP:WAM A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished. wmeza 2014-07-17T17:39:39Z microbial_phenotype OMP:0005135 abolished resistance to SDS-EDTA stress OMP:0005135 A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished. OMP:WAM A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control. wmeza 2014-08-07T14:55:46Z abnormal cell cycle microbial_phenotype OMP:0005136 altered cell cycle OMP:0005136 A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control. OMP:WAM abnormal cell cycle FYPO:0000011 An altered septation phenotype where formation of new cell septa is increased relative to a designated control. wmeza 2014-08-07T14:57:39Z microbial_phenotype OMP:0005137 increased septation OMP:0005137 An altered septation phenotype where formation of new cell septa is increased relative to a designated control. OMP:WAM An altered septation phenotype where formation of new cell septa is decreased relative to a designated control. wmeza 2014-08-07T14:58:34Z microbial_phenotype OMP:0005138 decreased septation OMP:0005138 An altered septation phenotype where formation of new cell septa is decreased relative to a designated control. OMP:WAM A resistance to killing by host phenotype where a microbe is resistant to killing by a host. Jesus 2016-02-02T13:54:09Z microbial_phenotype OMP:0005139 presence of resistance to killing by host OMP:0005139 A resistance to killing by host phenotype where a microbe is resistant to killing by a host. OMP:JG A resistance to killing by host phenotype where a microbe is sensitive to killing by a host. Jesus 2016-02-02T13:54:58Z microbial_phenotype OMP:0005140 absence of resistance to killing by host OMP:0005140 A resistance to killing by host phenotype where a microbe is sensitive to killing by a host. OMP:JG A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control. Jesus 2016-02-02T13:55:50Z microbial_phenotype OMP:0005141 altered resistance to killing by host OMP:0005141 A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control. OMP:JG An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control. Jesus 2016-02-02T13:57:14Z microbial_phenotype OMP:0005142 increased resistance to killing by host OMP:0005142 An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control. OMP:JG An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control. Jesus 2016-02-02T13:57:57Z microbial_phenotype OMP:0005143 decreased resistance to killing by host OMP:0005143 An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control. OMP:JG A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions. Jesus 2016-02-03T16:33:50Z GO:0005773 microbial_phenotype OMP:0005144 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. vacuolar morphology phenotype OMP:0005144 A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions. GO:0005773 OMP:JG GO:0005773 vacuole A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control. Jesus 2016-02-03T16:37:58Z microbial_phenotype OMP:0005145 altered vacuolar morphology OMP:0005145 A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control. OMP:JG An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control. Jesus 2016-02-03T16:39:06Z microbial_phenotype OMP:0005146 decreased vacuolar size OMP:0005146 An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control. OMP:JG An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control. Jesus 2016-02-03T16:39:51Z microbial_phenotype OMP:0005147 increased vacuolar size OMP:0005147 An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control. OMP:JG An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor. Jesus 2016-02-11T12:43:04Z microbial_phenotype OMP:0005148 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. ferric reductase activity phenotype OMP:0005148 An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor. OMP:JG A ferric reductase phenotype where an organism does not exhibit ferric reductase activity. Jesus 2016-02-11T12:44:19Z microbial_phenotype OMP:0005149 absence of ferric reductase activity OMP:0005149 A ferric reductase phenotype where an organism does not exhibit ferric reductase activity. OMP:JG A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control. Jesus 2016-02-11T12:44:51Z microbial_phenotype OMP:0005150 altered ferric reductase activity OMP:0005150 A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control. OMP:JG An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control. Jesus 2016-02-11T12:45:18Z microbial_phenotype OMP:0005151 decreased ferric reductase activity OMP:0005151 An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control. OMP:JG An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control. Jesus 2016-02-11T12:45:43Z microbial_phenotype OMP:0005152 increased ferric reductase activity OMP:0005152 An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control. OMP:JG A ferric reductase phenotype where an organism exhibits ferric reductase activity. Jesus 2016-02-11T12:46:10Z microbial_phenotype OMP:0005153 presence of ferric reductase activity OMP:0005153 A ferric reductase phenotype where an organism exhibits ferric reductase activity. OMP:JG An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors. Jesus 2016-02-11T13:11:51Z microbial_phenotype OMP:0005154 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. protein kinase A activity phenotype OMP:0005154 An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors. OMP:JG A protein kinase A phenotype where an organism does not exhibit protein kinase A activity. Jesus 2016-02-11T13:12:38Z microbial_phenotype OMP:0005155 absence of protein kinase A activity OMP:0005155 A protein kinase A phenotype where an organism does not exhibit protein kinase A activity. OMP:JG A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control. Jesus 2016-02-11T13:14:19Z microbial_phenotype OMP:0005156 altered protein kinase A activity OMP:0005156 A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control. OMP:JG An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control. Jesus 2016-02-11T13:14:52Z microbial_phenotype OMP:0005157 decreased protein kinase A activity OMP:0005157 An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control. OMP:JG An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control. Jesus 2016-02-11T13:15:29Z microbial_phenotype OMP:0005158 increased protein kinase A activity OMP:0005158 An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control. OMP:JG A protein kinase A phenotype where an organism exhibits protein kinase A activity. Jesus 2016-02-11T13:16:11Z microbial_phenotype OMP:0005159 presence of protein kinase A activity OMP:0005159 A protein kinase A phenotype where an organism exhibits protein kinase A activity. OMP:JG An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive. Jesus 2016-02-11T13:29:38Z microbial_phenotype OMP:0005160 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. phosphatase activity phenotype OMP:0005160 An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive. OMP:JG A phosphatase phenotype where an organism does not exhibit Phosphatase activity. Jesus 2016-02-11T13:31:39Z microbial_phenotype OMP:0005161 absence of phosphatase activity OMP:0005161 A phosphatase phenotype where an organism does not exhibit Phosphatase activity. OMP:JG A phosphatase phenotype where phosphatase activity is altered relative to a designated control. Jesus 2016-02-11T13:32:34Z microbial_phenotype OMP:0005162 altered phosphatase activity OMP:0005162 A phosphatase phenotype where phosphatase activity is altered relative to a designated control. OMP:JG A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control. Jesus 2016-02-11T13:33:05Z microbial_phenotype OMP:0005163 decreased phosphatase activity OMP:0005163 A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control. OMP:JG An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control. Jesus 2016-02-11T13:35:13Z microbial_phenotype OMP:0005164 increased phosphatase activity OMP:0005164 An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control. OMP:JG A phosphatase phenotype where an organism exhibits phosphatase activity. Jesus 2016-02-11T13:37:34Z microbial_phenotype OMP:0005165 presence of phosphatase activity OMP:0005165 A phosphatase phenotype where an organism exhibits phosphatase activity. OMP:JG An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. Jesus 2016-02-15T15:25:14Z GO:0004784 microbial_phenotype OMP:0005166 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. superoxide dismutase activity phenotype OMP:0005166 An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. GO:0004784 OMP:JG GO:0004784 superoxide dismutase activity A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity. Jesus 2016-02-15T15:28:14Z microbial_phenotype OMP:0005167 absence of superoxide dismutase activity OMP:0005167 A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity. OMP:JG A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control. Jesus 2016-02-15T15:29:30Z microbial_phenotype OMP:0005168 altered superoxide dismutase activity OMP:0005168 A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control. OMP:JG A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control. Jesus 2016-02-15T15:30:28Z microbial_phenotype OMP:0005169 decreased superoxide dismutase activity OMP:0005169 A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control. OMP:JG An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control. Jesus 2016-02-15T15:31:28Z microbial_phenotype OMP:0005170 increased superoxide dismutase activity OMP:0005170 An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control. OMP:JG A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity. Jesus 2016-02-15T15:32:13Z microbial_phenotype OMP:0005171 presence of superoxide dismutase activity OMP:0005171 A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity. OMP:JG An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control. Jesus 2016-02-15T16:34:58Z microbial_phenotype OMP:0005172 delayed cell cycle progression OMP:0005172 An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control. OMP:JG An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum. Jesus 2016-05-18T14:29:30Z GO:0003993 microbial_phenotype OMP:0005173 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. acid phosphatase activity phenotype OMP:0005173 An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum. OMP:JG GO:0003993 acid phosphatase activity An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity. Jesus 2016-05-18T14:33:20Z microbial_phenotype OMP:0005174 presence of acid phosphatase activity OMP:0005174 An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity. OMP:JG An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity. Jesus 2016-05-18T14:39:41Z microbial_phenotype OMP:0005175 absence of acid phosphatase activity OMP:0005175 An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity. OMP:JG An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control. Jesus 2016-05-18T14:40:33Z microbial_phenotype OMP:0005176 altered acid phosphatase activity OMP:0005176 An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control. OMP:JG An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control. Jesus 2016-05-18T14:41:06Z microbial_phenotype OMP:0005177 decreased acid phosphatase activity OMP:0005177 An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control. OMP:JG A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished. Jesus 2016-05-18T14:41:52Z microbial_phenotype OMP:0005178 abolished acid phosphatase activity OMP:0005178 A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished. OMP:JG An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control. Jesus 2016-05-18T14:43:12Z microbial_phenotype OMP:0005179 increased acid phosphatase activity OMP:0005179 An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control. OMP:JG A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell. Jesus 2016-05-21T09:09:03Z GO:0005856 microbial_phenotype OMP:0005180 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cytoskeleton morphology phenotype OMP:0005180 A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell. OMP:JG GO:0005856 cytoskeleton A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control. Jesus 2016-05-21T09:57:50Z microbial_phenotype OMP:0005181 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered cytoskeleton morphology phenotype OMP:0005181 A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control. GO:JG A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell. Jesus 2016-05-21T09:59:30Z GO:00015629 microbial_phenotype OMP:0005182 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. actin cytoskeleton morphology phenotype OMP:0005182 A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell. OMP:JG An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton. Jesus 2016-05-21T10:01:36Z microbial_phenotype OMP:0005183 absence of actin cytoskeleton OMP:0005183 An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton. OMP:JG An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton. Jesus 2016-05-21T10:03:01Z microbial_phenotype OMP:0005184 presence of actin cytoskeleton OMP:0005184 An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton. OMP:JG An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control. Jesus 2016-05-21T10:03:47Z microbial_phenotype OMP:0005185 altered actin cytoskeleton morphology OMP:0005185 An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control. OMP:JG An altered cytoskeleton morphology phenotype where cytoskeleton morphology is decreased relative to a designated control. Jesus 2016-05-21T10:04:40Z microbial_phenotype OMP:0005186 decreased cytoskeleton phenotype true OMP:0005186 An altered cytoskeleton morphology phenotype where cytoskeleton morphology is decreased relative to a designated control. OMP:JG A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished. Jesus 2016-05-21T10:05:21Z microbial_phenotype OMP:0005187 abolished cytoskeleton morphology true OMP:0005187 A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished. OMP:JG An altered cytoskeleton morphology phenotype where cytoskeleton morphology is increased relative to a designated control. Jesus 2016-05-21T10:06:05Z microbial_phenotype OMP:0005188 increased cytoskeleton morphology true OMP:0005188 An altered cytoskeleton morphology phenotype where cytoskeleton morphology is increased relative to a designated control. OMP:JG A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen. Jesus 2016-06-09T15:08:16Z microbial_phenotype OMP:0005189 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. anaerobic population growth phenotype OMP:0005189 A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen. OMP:JG A population growth range phenotype where a microbial population is able to grow in the absence of oxygen. Jesus 2016-06-09T15:10:36Z microbial_phenotype OMP:0005190 presence of anaerobic population growth OMP:0005190 A population growth range phenotype where a microbial population is able to grow in the absence of oxygen. OMP:JG An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen. Jesus 2016-06-09T15:12:13Z microbial_phenotype OMP:0005191 absence of anaerobic population growth OMP:0005191 An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen. OMP:JG A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control. Jesus 2016-06-09T15:12:52Z microbial_phenotype OMP:0005192 Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. altered anaerobic population growth OMP:0005192 A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control. OMP:JG An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control. Jesus 2016-06-09T15:13:45Z microbial_phenotype OMP:0005193 increased anaerobic population growth yield OMP:0005193 An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control. OMP:JG An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control. Jesus 2016-06-09T15:14:35Z microbial_phenotype OMP:0005194 decreased anaerobic population growth yield OMP:0005194 An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control. OMP:JG An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished. Jesus 2016-06-09T15:15:50Z microbial_phenotype OMP:0005195 abolished anaerobic population growth OMP:0005195 An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished. OMP:JG An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control. Jesus 2016-06-09T15:19:53Z microbial_phenotype OMP:0005196 increased anaerobic population growth rate OMP:0005196 An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control. OMP:JG An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control. Jesus 2016-06-09T15:21:49Z microbial_phenotype OMP:0005197 decreased anaerobic population growth rate OMP:0005197 An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control. OMP:JG An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage. Jesus 2016-06-09T23:05:33Z GO:0000033 microbial_phenotype OMP:0005198 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. alpha-1,3-mannosyltransferase activity phenotype OMP:0005198 An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage. OMP:JG GO:0000033 alpha-1,3- mannosyltransferase activity An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity. Jesus 2016-06-09T23:08:19Z microbial_phenotype OMP:0005199 presence of alpha-1,3-mannosyltransferase activity OMP:0005199 An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity. OMP:JG An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity. Jesus 2016-06-09T23:09:26Z microbial_phenotype OMP:0005200 absence of alpha-1,3-mannosyltransferase activity OMP:0005200 An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity. GO:JG An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control. Jesus 2016-06-09T23:13:17Z microbial_phenotype OMP:0005201 altered alpha-1,3-mannosyltransferase activity OMP:0005201 An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control. OMP:JG An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control. Jesus 2016-06-09T23:14:41Z microbial_phenotype OMP:0005202 increased alpha-1,3-mannosyltransferase activity OMP:0005202 An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control. OMP:JG An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control. Jesus 2016-06-09T23:15:42Z microbial_phenotype OMP:0005203 decreased alpha-1,3-mannosyltransferase activity OMP:0005203 An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control. OMP:JG An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished. Jesus 2016-06-09T23:16:29Z microbial_phenotype OMP:0005204 abolished alpha-1,3-mannosyltransferase activity OMP:0005204 An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished. OMP:JG A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly. Jesus 2016-06-20T14:06:30Z APO:0000288 GO:0022610 microbial_phenotype OMP:0005205 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adhesion phenotype OMP:0005205 A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly. OMP:JG APO:0000288 adhesion GO:0022610 biological adhesion An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship. Jesus 2016-06-20T14:10:51Z GO:0044406 microbial_phenotype OMP:0005206 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. adhesion to host phenotype OMP:0005206 An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship. OMP:JG GO:0044406 adhesion to host An adhesion to host phenotype where a microbe lacks the ability to attach to a host. Jesus 2016-06-20T14:12:43Z microbial_phenotype OMP:0005207 absence of adhesion to host OMP:0005207 An adhesion to host phenotype where a microbe lacks the ability to attach to a host. OMP:JG An adhesion to host phenotype where a microbe has the ability to attach to a host. Jesus 2016-06-20T14:14:40Z microbial_phenotype OMP:0005208 presence of adhesion to host OMP:0005208 An adhesion to host phenotype where a microbe has the ability to attach to a host. OMP:JG An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control. Jesus 2016-06-20T14:15:04Z microbial_phenotype OMP:0005209 altered adhesion to host OMP:0005209 An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control. OMP:JG An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control. Jesus 2016-06-20T14:16:04Z microbial_phenotype OMP:0005210 decreased adhesion to host OMP:0005210 An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control. OMP:JG A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished. Jesus 2016-06-20T14:16:42Z microbial_phenotype OMP:0005211 abolished adhesion to host OMP:0005211 A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished. OMP:JG An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control. Jesus 2016-06-20T14:17:26Z microbial_phenotype OMP:0005212 increased adhesion to host OMP:0005212 An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control. OMP:JG An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly. Jesus 2016-06-20T14:19:00Z microbial_phenotype OMP:0005213 presence of adhesion OMP:0005213 An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly. OMP:JG An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly. Jesus 2016-06-20T14:19:34Z microbial_phenotype OMP:0005214 absence of adhesion OMP:0005214 An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly. OMP:JG An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control. Jesus 2016-06-20T14:20:13Z microbial_phenotype OMP:0005215 altered adhesion OMP:0005215 An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control. OMP:JG An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control. Jesus 2016-06-20T14:20:57Z microbial_phenotype OMP:0005216 increased adhesion OMP:0005216 An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control. OMP:JG An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control. Jesus 2016-06-20T14:21:29Z microbial_phenotype OMP:0005217 decreased adhesion OMP:0005217 An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control. OMP:JG A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished. Jesus 2016-06-20T14:22:55Z microbial_phenotype OMP:0005218 abolished adhesion OMP:0005218 A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished. OMP:JG A cellular process phenotype involving the fusion of individual cells from different organisms. Jesus 2016-06-20T23:02:09Z microbial_phenotype OMP:0005219 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell fusion phenotype OMP:0005219 A cellular process phenotype involving the fusion of individual cells from different organisms. OMP:JG A cell fusion phenotype where fusion of individual cells from different organisms occurs. Jesus 2016-06-20T23:03:39Z microbial_phenotype OMP:0005220 presence of cell fusion OMP:0005220 A cell fusion phenotype where fusion of individual cells from different organisms occurs. OMP:JG A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control. Jesus 2016-06-20T23:04:36Z microbial_phenotype OMP:0005221 altered cell fusion OMP:0005221 A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control. OMP:JG An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control. Jesus 2016-06-20T23:07:58Z microbial_phenotype OMP:0005222 increased cell fusion OMP:0005222 An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control. OMP:JG An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control. Jesus 2016-06-20T23:08:40Z microbial_phenotype OMP:0005223 decreased cell fusion OMP:0005223 An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control. OMP:JG A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished. Jesus 2016-06-20T23:09:29Z microbial_phenotype OMP:0005224 abolished cell fusion OMP:0005224 A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished. OMP:JG An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control. Jesus 2016-06-20T23:10:02Z microbial_phenotype OMP:0005225 delayed cell fusion OMP:0005225 An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control. OMP:JG A cell fusion phenotype relating to the fusion of individual cells from each partner during mating. Jesus 2016-06-20T23:11:14Z APO:0000033 microbial_phenotype conjugation with cellular fusion OMP:0005226 cell fusion during mating phenotype OMP:0005226 A cell fusion phenotype relating to the fusion of individual cells from each partner during mating. OMP:JG APO:0000033 cell fusion conjugation with cellular fusion GO:0000747 A cell fusion during mating phenotype where individual cells from each partner fuse during mating. Jesus 2016-06-20T23:15:38Z microbial_phenotype OMP:0005227 presence of cell fusion during mating OMP:0005227 A cell fusion during mating phenotype where individual cells from each partner fuse during mating. OMP:JG A cell fusion during mating phenotype where cell fusion does not occur during mating. Jesus 2016-06-20T23:16:33Z microbial_phenotype OMP:0005228 absence of cell fusion during mating OMP:0005228 A cell fusion during mating phenotype where cell fusion does not occur during mating. OMP:JG A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control. Jesus 2016-06-20T23:17:17Z microbial_phenotype OMP:0005229 altered cell fusion during mating OMP:0005229 A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control. OMP:JG An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating. Jesus 2016-06-20T23:17:51Z microbial_phenotype OMP:0005230 increased cell fusion during mating OMP:0005230 An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating. OMP:JG An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating. Jesus 2016-06-20T23:21:08Z microbial_phenotype OMP:0005231 decreased cell fusion during mating OMP:0005231 An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating. OMP:JG A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished. Jesus 2016-06-20T23:21:44Z microbial_phenotype OMP:0005232 abolished cell fusion during mating OMP:0005232 A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished. OMP:JG A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. Jesus 2016-06-20T23:33:27Z APO:0000053 microbial_phenotype OMP:0005233 cell wall morphology phenotype OMP:0005233 A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. GO:0005618 OMP:JG APO:0000053 Cell wall morphology A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control. Jesus 2016-06-20T23:36:20Z microbial_phenotype OMP:0005234 altered cell wall morphology OMP:0005234 A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control. OMP:JG A cell wall morphology phenotype where a cell or cells exhibit a cell wall. Jesus 2016-06-20T23:37:37Z microbial_phenotype OMP:0005235 presence of cell wall OMP:0005235 A cell wall morphology phenotype where a cell or cells exhibit a cell wall. OMP:JG A cell wall morphology phenotype where a cell or cells lack a cell wall. Jesus 2016-06-20T23:38:17Z microbial_phenotype OMP:0005236 absence of cell wall OMP:0005236 A cell wall morphology phenotype where a cell or cells lack a cell wall. OMP:JG A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport. Jesus 2016-06-20T23:41:43Z GO:0005794 microbial_phenotype OMP:0005237 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. golgi apparatus phenotype OMP:0005237 A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport. OMP:JG GO:0005794 golgi apparatus A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack. Jesus 2016-06-20T23:43:17Z APO:0000243 microbial_phenotype OMP:0005238 golgi apparatus morphology phenotype OMP:0005238 A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack. OMP:JG APO:0000243 Golgi morphology A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control. Jesus 2016-06-20T23:44:33Z microbial_phenotype OMP:0005239 altered golgi morphology OMP:0005239 A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control. OMP:JG A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus. Jesus 2016-06-20T23:45:22Z microbial_phenotype OMP:0005240 presence of golgi apparatus OMP:0005240 A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus. OMP:JG A golgi apparatus phenotype where a cell or cells lack a golgi apparatus. Jesus 2016-06-20T23:46:03Z microbial_phenotype OMP:0005241 absence of golgi apparatus OMP:0005241 A golgi apparatus phenotype where a cell or cells lack a golgi apparatus. OMP:JG An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control. Jesus 2016-06-23T14:28:58Z microbial_phenotype OMP:0005242 delayed cell fusion during mating OMP:0005242 An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control. OMP:JG An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape. Jesus 2016-06-23T14:38:44Z APO:0000027 GO:0030447 microbial_phenotype OMP:0005243 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. filamentous growth phenotype OMP:0005243 An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape. GO:0030447 OMP:JG APO:0000027 development GO:0030447 filamentous growth A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control. Jesus 2016-06-23T14:41:10Z microbial_phenotype OMP:0005244 altered filamentous growth OMP:0005244 A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control. OMP:JG An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control. Jesus 2016-06-23T14:41:44Z microbial_phenotype OMP:0005245 increased filamentous growth OMP:0005245 An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control. OMP:JG An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control. Jesus 2016-06-23T14:42:18Z microbial_phenotype OMP:0005246 decreased filamentous growth OMP:0005246 An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control. OMP:JG A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished. Jesus 2016-06-23T14:42:45Z microbial_phenotype OMP:0005247 abolished filamentous growth OMP:0005247 A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished. OMP:JG A filamentous growth phenotype where a microbe exhibits filamentous growth. Jesus 2016-06-23T14:43:53Z microbial_phenotype OMP:0005248 presence of filamentous growth OMP:0005248 A filamentous growth phenotype where a microbe exhibits filamentous growth. OMP:JG A filamentous growth phenotype where a microbe does not exhibit filamentous growth. Jesus 2016-06-23T14:44:33Z microbial_phenotype OMP:0005249 absence of filamentous growth OMP:0005249 A filamentous growth phenotype where a microbe does not exhibit filamentous growth. OMP:JG A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%). Jesus 2016-06-23T14:59:55Z microbial_phenotype OMP:0005250 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. aerobic population growth phenotype OMP:0005250 A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%). OMP:JG An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%). Jesus 2016-06-23T15:00:52Z microbial_phenotype OMP:0005251 absence of aerobic population growth OMP:0005251 An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%). OMP:JG A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control. Jesus 2016-06-23T15:01:40Z microbial_phenotype OMP:0005252 altered aerobic population growth OMP:0005252 A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control. OMP:JG A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2). Jesus 2016-06-23T15:02:38Z microbial_phenotype OMP:0005253 presence of aerobic population growth OMP:0005253 A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2). OMP:JG A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2. Jesus 2016-06-23T15:04:24Z microbial_phenotype OMP:0005254 microaerophilic population growth phenotype OMP:0005254 A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2. OMP:JG A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions. Jesus 2016-06-23T15:05:26Z microbial_phenotype OMP:0005255 presence of microaerophilic population growth OMP:0005255 A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions. OMP:JG A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment. Jesus 2016-06-23T15:06:52Z microbial_phenotype OMP:0005256 absence of microaerophilic growth OMP:0005256 A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment. JG:OMP A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control. Jesus 2016-06-23T15:07:30Z microbial_phenotype OMP:0005257 altered microaerophilic population growth OMP:0005257 A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control. OMP:JG An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control. Jesus 2016-06-23T15:07:51Z microbial_phenotype OMP:0005258 increased microaerophilic population growth rate OMP:0005258 An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control. OMP:JG An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. Jesus 2016-06-23T15:08:31Z microbial_phenotype OMP:0005259 decreased microaerophilic population growth rate OMP:0005259 An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. OMP:JG A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. Jesus 2016-06-27T14:17:43Z GO:0006810 microbial_phenotype OMP:0005260 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. transport phenotype OMP:0005260 A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. OMP:JG A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. Jesus 2016-06-27T14:20:19Z APO:0000075 FYPO:0003886 GO:0006897 microbial_phenotype OMP:0005261 endocytosis phenotype OMP:0005261 A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control. Jesus 2016-06-27T14:23:04Z microbial_phenotype OMP:0005262 altered endocytosis OMP:0005262 An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control. OMP:JG An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. Jesus 2016-06-27T14:23:59Z FYPO:0000425 increased endocytosis during vegetative growth microbial_phenotype OMP:0005263 increased endocytosis OMP:0005263 An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG increased endocytosis during vegetative growth FYPO:0000425 An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. Jesus 2016-06-27T14:26:10Z FYPO:0000422 decreased endocytosis during vegetative growth microbial_phenotype OMP:0005264 decreased endocytosis OMP:0005264 An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG decreased endocytosis during vegetative growth FYPO:0000422 A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished. Jesus 2016-06-27T14:29:14Z abolished endocytosis during vegetative growth microbial_phenotype OMP:0005265 abolished endocytosis OMP:0005265 A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished. OMP:JG abolished endocytosis during vegetative growth FYPO:0000421 An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. Jesus 2016-06-27T14:31:13Z microbial_phenotype delayed onset of endocytosis during vegetative growth OMP:0005266 delayed onset of endocytosis OMP:0005266 An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein. OMP:JG delayed onset of endocytosis during vegetative growth FYPO:0000424 An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis. Jesus 2016-06-27T14:32:32Z microbial_phenotype OMP:0005267 presence of endocytosis OMP:0005267 An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis. OMP:JG An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis. Jesus 2016-06-27T14:33:03Z microbial_phenotype OMP:0005268 absence of endocytosis OMP:0005268 An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis. OMP:JG A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles. Jesus 2016-06-27T14:45:57Z GO:0012505 PMID:19121819 microbial_phenotype OMP:0005269 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. endomembrane system phenotype OMP:0005269 A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles. OMP:JG GO:0012505 endomembrane system An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system. Jesus 2016-06-27T14:48:31Z APO:0000303 microbial_phenotype OMP:0005270 endomembrane system morphology phenotype OMP:0005270 An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system. OMP:JG APO:0000303 endomembrane system morphology An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control. Jesus 2016-06-27T14:51:21Z microbial_phenotype OMP:0005271 altered endomembrane system morphology OMP:0005271 An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control. OMP:JG An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system. Jesus 2016-06-27T14:52:02Z microbial_phenotype OMP:0005272 presence of endomembrane system OMP:0005272 An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system. OMP:JG An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system. Jesus 2016-06-27T14:52:45Z microbial_phenotype OMP:0005273 absence of endomembrane system OMP:0005273 An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system. OMP:JG An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element. Jesus 2016-07-15T15:29:19Z D-cycloserine resistance phenotype chloripromazine resistance phenotype coumarin resistance phenotype cycloheximide resistance phenotype methotrexate resistance phenotype paraquat dichloride resistance phenotype phenazine methosulfate resistance phenotype pyocyanin resistance phenotype radicicol resistance phenotype rifampicin resistance phenotype thiolactomycin resistance phenotype thiolactone resistance phenotype microbial_phenotype OMP:0005274 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. organic heterocyclic compound resistance phenotype OMP:0005274 An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element. CHEBI:24532 OMP:JG D-cycloserine resistance phenotype CHEBI:40009 chloripromazine resistance phenotype CHEBI:3647 coumarin resistance phenotype CHEBI:28794 cycloheximide resistance phenotype CHEBI:27641 methotrexate resistance phenotype CHEBI:44185 paraquat dichloride resistance phenotype CHEBI:34905 phenazine methosulfate resistance phenotype CHEBI:53396 pyocyanin resistance phenotype CHEBI:62220 radicicol resistance phenotype CHEBI:556075 rifampicin resistance phenotype CHEBI:28077 thiolactomycin resistance phenotype CID:445629 thiolactone resistance phenotype CHEBI:60317 An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control. Jesus 2016-07-15T15:33:41Z microbial_phenotype OMP:0005275 altered organic heterocyclic compound resistance OMP:0005275 An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control. OMP:JG An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control. Jesus 2016-07-15T15:34:14Z microbial_phenotype OMP:0005276 decreased resistance to organic heterocyclic compound OMP:0005276 An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control. OMP:JG A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished. Jesus 2016-07-15T15:34:45Z microbial_phenotype OMP:0005277 abolished resistance to organic heterocyclic compound OMP:0005277 A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished. OMP:JG An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control. Jesus 2016-07-15T15:35:37Z microbial_phenotype OMP:0005278 increased resistance to organic heterocyclic compound OMP:0005278 An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control. OMP:JG An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound. Jesus 2016-07-15T15:36:29Z microbial_phenotype OMP:0005279 not resistant to organic heterocyclic compound OMP:0005279 An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound. OMP:JG An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds. Jesus 2016-07-15T15:37:34Z cycloheximide microbial_phenotype OMP:0005280 resistant to organic heterocyclic compound OMP:0005280 An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds. OMP:JG cycloheximide CHEBI:27641 A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue. Jesus 2016-08-16T01:05:03Z microbial_phenotype OMP:0005281 colonization of host tissue phenotype OMP:0005281 A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue. OMP:JG A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host. Jesus 2016-08-16T01:06:46Z microbial_phenotype OMP:0005282 presence of colonization of host tissue OMP:0005282 A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host. OMP:JG A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host. Jesus 2016-08-16T01:07:20Z microbial_phenotype OMP:0005283 absence of colonization of host tissue OMP:0005283 A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host. OMP:JG A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control. Jesus 2016-08-16T01:07:57Z microbial_phenotype OMP:0005284 altered colonization of host tissue OMP:0005284 A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control. OMP:JG An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control. Jesus 2016-08-16T01:08:32Z microbial_phenotype OMP:0005285 increased colonization of host tissue OMP:0005285 An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control. OMP:JG An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control. Jesus 2016-08-16T01:09:04Z microbial_phenotype OMP:0005286 decreased colonization of host tissue OMP:0005286 An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control. OMP:JG A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished. Jesus 2016-08-16T01:09:35Z microbial_phenotype OMP:0005287 abolished colonization of host tissue OMP:0005287 A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished. OMP:JG A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host. Jesus 2016-08-16T01:46:42Z microbial_phenotype OMP:0005288 colonization of tissue in an immunocompromised host phenotype OMP:0005288 A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host. OMP:JG A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host. Jesus 2016-08-16T01:47:48Z microbial_phenotype OMP:0005289 presence of colonization of tissue in an immunocompromised host OMP:0005289 A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host. OMP:JG A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host. Jesus 2016-08-16T01:48:23Z microbial_phenotype OMP:0005290 absence of colonization of tissue in an immunocompromised host OMP:0005290 A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host. OMP:JG A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control. Jesus 2016-08-16T01:49:00Z microbial_phenotype OMP:0005291 altered colonization of tissue in an immunocompromised host OMP:0005291 A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control. OMP:JG An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control. Jesus 2016-08-16T01:49:41Z microbial_phenotype OMP:0005292 increased colonization of tissue in an immunocompromised host OMP:0005292 An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control. OMP:JG An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control. Jesus 2016-08-16T01:50:17Z microbial_phenotype OMP:0005293 decreased colonization of tissue in an immunocompromised host OMP:0005293 An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control. OMP:JG A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished. Jesus 2016-08-16T01:50:45Z microbial_phenotype OMP:0005294 abolished colonization of tissue in an immunocompromised host OMP:0005294 A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished. OMP:JG A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue. Jesus 2016-08-29T15:32:17Z microbial_phenotype OMP:0005295 colonization of mouse tissue OMP:0005295 A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue. OMP:JG A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue. Jesus 2016-08-29T15:34:02Z microbial_phenotype OMP:0005296 presence of colonization of mouse tissue OMP:0005296 A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue. OMP:JG A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue. Jesus 2016-08-29T15:34:47Z microbial_phenotype OMP:0005297 absence of colonization of mouse tissue OMP:0005297 A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue. OMP:JG A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control. Jesus 2016-08-29T15:35:22Z microbial_phenotype OMP:0005298 altered colonization of mouse tissue OMP:0005298 A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control. Jesus 2016-08-29T15:36:17Z microbial_phenotype OMP:0005299 increased colonization of mouse tissue OMP:0005299 An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control. OMP:JG An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control. Jesus 2016-08-29T15:36:52Z microbial_phenotype OMP:0005300 decreased colonization of mouse tissue OMP:0005300 An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG A decreased colonization of mouse tissue phenotype where colonization is abolished. Jesus 2016-08-29T15:37:32Z microbial_phenotype OMP:0005301 abolished colonization of mouse tissue OMP:0005301 A decreased colonization of mouse tissue phenotype where colonization is abolished. OMP:JG A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse. Jesus 2016-08-30T11:28:41Z microbial_phenotype OMP:0005302 colonization of tissue in an immunocompromised mouse phenotype OMP:0005302 A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse. OMP:JG A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse. Jesus 2016-08-30T11:31:08Z microbial_phenotype OMP:0005303 presence of colonization of tissue in an immunocompromised mouse OMP:0005303 A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse. OMP:JG A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse. Jesus 2016-08-30T11:32:11Z microbial_phenotype OMP:0005304 absence of colonization of tissue in an immunocompromised mouse OMP:0005304 A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse. OMP:JG A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. Jesus 2016-08-30T11:33:51Z microbial_phenotype OMP:0005305 altered colonization of tissue in an immunocompromised mouse OMP:0005305 A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. Jesus 2016-08-30T11:35:33Z microbial_phenotype OMP:0005306 increased colonization of tissue in an immunocompromised mouse OMP:0005306 An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. OMP:JG An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. Jesus 2016-08-30T11:35:57Z microbial_phenotype OMP:0005307 decreased colonization of tissue in an immunocompromised mouse OMP:0005307 An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished. Jesus 2016-08-30T11:36:46Z microbial_phenotype OMP:0005308 abolished colonization of tissue in an immunocompromised mouse OMP:0005308 A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished. OMP:JG A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue. Jesus 2016-08-30T11:43:47Z microbial_phenotype OMP:0005309 colonization of rabbit tissue phenotype OMP:0005309 A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue. OMP:JG A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue. Jesus 2016-08-30T11:44:31Z microbial_phenotype OMP:0005310 presence of colonization of rabbit tissue OMP:0005310 A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue. OMP:JG A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue. Jesus 2016-08-30T11:45:59Z microbial_phenotype OMP:0005311 absence of colonization of rabbit tissue OMP:0005311 A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue. OMP:JG A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. Jesus 2016-08-30T11:46:52Z microbial_phenotype OMP:0005312 altered colonization of rabbit tissue OMP:0005312 A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control. Jesus 2016-08-30T11:47:21Z microbial_phenotype OMP:0005313 increased colonization of rabbit tissue OMP:0005313 An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control. OMP:JG An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. Jesus 2016-08-30T11:47:50Z microbial_phenotype OMP:0005314 decreased colonization of rabbit tissue OMP:0005314 An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished. Jesus 2016-08-30T11:48:21Z microbial_phenotype OMP:0005315 abolished colonization of rabbit tissue OMP:0005315 A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished. OMP:JG A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit. Jesus 2016-08-30T11:49:36Z microbial_phenotype OMP:0005316 colonization of tissue in an immunocompromised rabbit phenotype OMP:0005316 A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit. OMP:JG A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit. Jesus 2016-08-30T11:50:36Z microbial_phenotype OMP:0005317 presence of colonization of tissue in an immunocompromised rabbit OMP:0005317 A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit. OMP:JG A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit. Jesus 2016-08-30T11:52:27Z microbial_phenotype OMP:0005318 absence of colonization of tissue in an immunocompromised rabbit OMP:0005318 A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit. OMP:JG A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. Jesus 2016-08-30T11:52:54Z microbial_phenotype OMP:0005319 altered colonization of tissue in an immunocompromised rabbit OMP:0005319 A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:JG An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. Jesus 2016-08-30T11:55:35Z microbial_phenotype OMP:0005320 increased colonization of tissue in an immunocompromised rabbit OMP:0005320 An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. OMP:JG An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. Jesus 2016-08-30T11:56:07Z microbial_phenotype OMP:0005321 decreased colonization of tissue in an immunocompromised rabbit OMP:0005321 An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:JG A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished. Jesus 2016-08-30T11:56:47Z microbial_phenotype OMP:0005322 abolished colonization of tissue in an immunocompromised rabbit OMP:0005322 A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished. OMP:JG A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control. jguzman 2016-09-19T14:01:13Z microbial_phenotype OMP:0005323 altered cell motility by swarming OMP:0005323 A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control. OMP:JG A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control. jguzman 2016-09-19T14:02:03Z microbial_phenotype OMP:0005324 altered cell motility by swimming OMP:0005324 A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control. OMP:JG An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth. Jesus 2016-09-23T16:58:54Z microbial_phenotype OMP:0005325 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. agar invasion phenotype OMP:0005325 An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth. OMP:JG An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth. Jesus 2016-09-23T17:03:49Z invasive growth microbial_phenotype OMP:0005326 presence of agar invasion OMP:0005326 An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth. OMP:JG invasive growth APO:0000028 An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth. Jesus 2016-09-23T17:05:49Z microbial_phenotype OMP:0005327 absence of agar invasion OMP:0005327 An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth. OMP:JG An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control. Jesus 2016-09-23T17:07:22Z microbial_phenotype OMP:0005328 altered agar invasion OMP:0005328 An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control. OMP:JG An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control. Jesus 2016-09-23T17:07:59Z microbial_phenotype OMP:0005329 increased agar invasion OMP:0005329 An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control. OMP:JG An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control. Jesus 2016-09-23T17:08:25Z microbial_phenotype OMP:0005330 decreased agar invasion phenotype OMP:0005330 An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control. OMP:JG A decreased agar invasion phenotype where the ability to invade agar media is abolished. Jesus 2016-09-23T17:08:54Z microbial_phenotype OMP:0005331 abolished agar invasion OMP:0005331 A decreased agar invasion phenotype where the ability to invade agar media is abolished. OMP:JG A cellular component phenotype relating to the localization or placement of proteins within a cell. Jesus 2016-10-05T14:17:25Z APO:0000209 microbial_phenotype OMP:0005332 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. protein localization phenotype OMP:0005332 A cellular component phenotype relating to the localization or placement of proteins within a cell. APO:0000209 OMP:JG APO:0000209 protein/peptide distribution A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control. Jesus 2016-10-05T14:18:53Z microbial_phenotype OMP:0005333 altered protein localization OMP:0005333 A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control. OMP:JG A protein localization phenotype where an organism, cell, or cells exhibit protein localization. Jesus 2016-10-05T14:19:21Z microbial_phenotype OMP:0005334 presence of protein localization OMP:0005334 A protein localization phenotype where an organism, cell, or cells exhibit protein localization. OMP:JG A protein localization phenotype where an organism, cell, or cells lack protein localization. Jesus 2016-10-05T14:19:51Z microbial_phenotype OMP:0005335 absence of protein localization OMP:0005335 A protein localization phenotype where an organism, cell, or cells lack protein localization. OMP:JG A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised. Jesus 2016-10-31T13:27:46Z microbial_phenotype OMP:0005336 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell lysis phenotype OMP:0005336 A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised. FYPO:0002488 GO::0019835 OMP:JG A cell lysis phenotype where cytolysis doesn't occur. Jesus 2016-10-31T13:29:12Z microbial_phenotype OMP:0005337 absence of cell lysis OMP:0005337 A cell lysis phenotype where cytolysis doesn't occur. OMP:JG A cell lysis phenotype where cytolysis occurs. Jesus 2016-10-31T13:30:04Z microbial_phenotype OMP:0005338 presence of cell lysis OMP:0005338 A cell lysis phenotype where cytolysis occurs. OMP:JG A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control. Jesus 2016-10-31T13:30:56Z microbial_phenotype OMP:0005339 altered cell lysis OMP:0005339 A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control. OMP:JG An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control. Jesus 2016-10-31T13:31:44Z microbial_phenotype OMP:0005340 decreased cell lysis OMP:0005340 An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control. OMP:JG A decreased cell lysis phenotype where cytolysis is abolished. Jesus 2016-10-31T13:32:41Z microbial_phenotype OMP:0005341 abolished cell lysis OMP:0005341 A decreased cell lysis phenotype where cytolysis is abolished. OMP:JG An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control. Jesus 2016-10-31T13:33:49Z microbial_phenotype OMP:0005342 increased cell lysis OMP:0005342 An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control. OMP:JG An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound. Jesus 2016-10-31T13:40:40Z CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype procaine resistance phenotype propidium iodide resistance phenotype sulfamethizole resistance phenotype triclosan resistance phenotype microbial_phenotype OMP:0005343 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. organic aromatic compound resistance phenotype OMP:0005343 An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound. OMP:JG CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype CHEBI:3259 procaine resistance phenotype CHEBI:8430 propidium iodide resistance phenotype CHEBI:51240 sulfamethizole resistance phenotype CHEBI:9331 triclosan resistance phenotype CHEBI:164200 An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control. Jesus 2016-10-31T13:45:41Z microbial_phenotype OMP:0005344 altered organic aromatic compound resistance OMP:0005344 An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control. OMP:JG An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control. Jesus 2016-10-31T13:46:37Z microbial_phenotype OMP:0005345 decreased resistance to organic aromatic compounds OMP:0005345 An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control. OMP:JG A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished. Jesus 2016-10-31T13:47:39Z microbial_phenotype OMP:0005346 abolished resistance to organic aromatic compounds OMP:0005346 A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished. OMP:JG An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control. Jesus 2016-10-31T13:48:38Z microbial_phenotype OMP:0005347 increased resistance to organic aromatic compounds OMP:0005347 An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control. OMP:JG An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds. Jesus 2016-10-31T13:49:36Z microbial_phenotype OMP:0005348 not resistant to organic aromatic compounds OMP:0005348 An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds. OMP:JG An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds. Jesus 2016-10-31T13:50:26Z microbial_phenotype OMP:0005349 resistant to organic aromatic compounds OMP:0005349 An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds. OMP:JG A mating phenotype where an organism uses the process of conjugation for sexual reproduction. Jesus 2016-11-21T13:08:52Z microbial_phenotype OMP:0005350 presence of mating OMP:0005350 A mating phenotype where an organism uses the process of conjugation for sexual reproduction. OMP:JG A mating phenotype where an organism does not use the process of conjugation for sexual reproduction. Jesus 2016-11-21T13:10:46Z microbial_phenotype OMP:0005351 absence of mating OMP:0005351 A mating phenotype where an organism does not use the process of conjugation for sexual reproduction. OMP:JG A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control. Jesus 2016-11-21T13:11:47Z microbial_phenotype OMP:0005352 altered mating OMP:0005352 A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control. OMP:JG An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control. Jesus 2016-11-21T13:13:40Z microbial_phenotype OMP:0005353 increased mating OMP:0005353 An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control. OMP:JG An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control. Jesus 2016-11-21T13:14:33Z microbial_phenotype OMP:0005354 decreased mating OMP:0005354 An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control. OMP:JG A decreased mating phenotype where sexual reproduction by conjugation is abolished. Jesus 2016-11-21T13:15:43Z microbial_phenotype OMP:0005355 abolished mating OMP:0005355 A decreased mating phenotype where sexual reproduction by conjugation is abolished. OMP:JG A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate. Jesus 2016-11-21T13:27:01Z microbial_phenotype OMP:0005356 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Depending on the assay used, a change in measured mating efficiency may reflect a change in conjugation frequency (see OMP:0007412 mating phenotype and its descendants) and/or a change in some other biological process such as sexual sporulation (see OMP:0007045 and its descendants). For this reason mating efficiency phenotype is not a child of mating phenotype, but instead a child of sexual reproduction phenotype (OMP:0007406). mating efficiency phenotype OMP:0005356 A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate. FYPO:0001147 OMP:JG A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control. Jesus 2016-11-21T13:29:32Z microbial_phenotype OMP:0005357 altered mating efficiency OMP:0005357 A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control. OMP:JG A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control. Jesus 2016-11-21T13:30:39Z microbial_phenotype OMP:0005358 increased mating efficiency OMP:0005358 A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control. OMP:JG A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control. Jesus 2016-11-21T13:32:39Z microbial_phenotype OMP:0005359 decreased mating efficiency OMP:0005359 A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control. OMP:JG A decreased mating efficiency phenotype where mating is abolished. Jesus 2016-11-21T13:33:33Z microbial_phenotype OMP:0005360 abolished mating efficiency OMP:0005360 A decreased mating efficiency phenotype where mating is abolished. OMP:JG A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se. Jesus 2016-12-20T12:48:52Z microbial_phenotype OMP:0005361 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. osmotaxis phenotype OMP:0005361 A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se. OMP:JG PMID:3059348 An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient. Jesus 2016-12-20T12:51:45Z microbial_phenotype OMP:0005362 presence of osmotaxis OMP:0005362 An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient. OMP:JG An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient. Jesus 2016-12-20T12:52:21Z microbial_phenotype OMP:0005363 absence of osmotaxis OMP:0005363 An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient. OMP:JG A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration. Jesus 2016-12-20T12:53:34Z microbial_phenotype OMP:0005364 presence of positive osmotaxis OMP:0005364 A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration. OMP:JG A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration. Jesus 2016-12-20T12:54:30Z microbial_phenotype OMP:0005365 presence of negative osmotaxis OMP:0005365 A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration. OMP:JG A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished. Jesus 2016-12-20T12:59:07Z microbial_phenotype OMP:0005366 abolished osmotaxis OMP:0005366 A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished. OMP:JG An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis. Jesus 2016-12-20T13:00:12Z microbial_phenotype OMP:0005367 absence of negative osmotaxis OMP:0005367 An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis. OMP:JG A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished. Jesus 2016-12-20T13:02:31Z microbial_phenotype OMP:0005368 abolished negative osmotaxis OMP:0005368 A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished. OMP:JG A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis. Jesus 2016-12-20T13:03:16Z microbial_phenotype OMP:0005369 absence of positive osmotaxis OMP:0005369 A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis. OMP:JG A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished. Jesus 2016-12-20T13:04:08Z microbial_phenotype OMP:0005370 abolished positive osmotaxis OMP:0005370 A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished. OMP:JG An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control. Jesus 2016-12-20T13:05:17Z microbial_phenotype OMP:0005371 altered osmotaxis OMP:0005371 An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control. OMP:JG An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control. Jesus 2016-12-20T13:06:09Z microbial_phenotype OMP:0005372 decreased osmotaxis OMP:0005372 An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control. OMP:JG A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions. Jesus 2016-12-20T13:17:56Z microbial_phenotype OMP:0005373 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. sporulation frequency phenotype OMP:0005373 A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions. OMP:JG An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control. Jesus 2016-12-20T13:08:00Z microbial_phenotype OMP:0005374 increased osmotaxis OMP:0005374 An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control. OMP:JG An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control. Jesus 2016-12-20T13:08:34Z microbial_phenotype OMP:0005375 increased negative osmotaxis OMP:0005375 An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control. OMP:JG An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control. Jesus 2016-12-20T13:09:07Z microbial_phenotype OMP:0005376 increased positive osmotaxis OMP:0005376 An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control. OMP:JG A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions. Jesus 2016-12-20T13:23:48Z sporulation efficiency microbial_phenotype OMP:0005377 sexual sporulation frequency OMP:0005377 A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions. APO:0000044 OMP:JG sporulation efficiency APO:0000044 A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control. Jesus 2016-12-20T13:27:44Z altered sexual sporulation efficiency microbial_phenotype OMP:0005378 altered sexual sporulation frequency OMP:0005378 A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control. OMP:JG An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control. Jesus 2016-12-20T13:32:18Z increased sexual sporulation efficiency microbial_phenotype OMP:0005379 increased sexual sporulation frequency OMP:0005379 An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control. OMP:JG An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control. Jesus 2016-12-20T13:33:55Z decreased sexual sporulation efficiency microbial_phenotype OMP:0005380 decreased sexual sporulation frequency OMP:0005380 An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control. OMP:JG A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection. Jesus 2016-12-20T13:35:03Z abolished sexual sporulation efficiency microbial_phenotype OMP:0005381 abolished sexual sporulation frequency OMP:0005381 A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection. OMP:JG A virion morphology phenotype that is referring to the form and structure of tails on viral particles. MiLaptop 2017-11-03T21:07:19Z microbial_phenotype OMP:0005382 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. tail morphology phenotype OMP:0005382 A virion morphology phenotype that is referring to the form and structure of tails on viral particles. OMP:dr A tail morphology phenotype where the virus has a tail present. MiLaptop 2017-11-03T21:10:23Z microbial_phenotype OMP:0005383 presence of tail OMP:0005383 A tail length phenotype where the maximum length of the tail is 17 nm. MiLaptop 2017-11-03T21:15:15Z microbial_phenotype OMP:0005384 presence of short tail OMP:0005384 A tail length phenotype ranging from 18 nm to 109 nm. MiLaptop 2017-11-03T21:17:21Z microbial_phenotype OMP:0005385 presence of normal tail OMP:0005385 A virion morphology phenotype related to the form and structure of the capsid of the virion. MiLaptop 2017-11-03T21:01:58Z microbial_phenotype OMP:0005386 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. capsid morphology phenotype OMP:0005386 A tail length phenotype ranging from 110 nm to 300 nm. MiLaptop 2017-11-03T21:19:23Z microbial_phenotype OMP:0005387 presence of long tail OMP:0005387 A phage tail phenotype where the tail contracts to inject its DNA into the host. MiLaptop 2017-11-03T21:20:42Z microbial_phenotype OMP:0005388 presence of contractile tail OMP:0005388 A phage tail phenotype where the tail does not contract to inject its DNA into the host. MiLaptop 2017-11-03T21:33:18Z microbial_phenotype OMP:0005389 presence of non-contractile tail OMP:0005389 A phage tail phenotype where only one tail per virion is present. MiLaptop 2017-11-03T21:34:28Z microbial_phenotype OMP:0005390 presence of a single tail OMP:0005390 A phage tail phenotype where more than one tail per virion is present. MiLaptop 2017-11-03T21:35:33Z microbial_phenotype OMP:0005391 presence of multiple tails OMP:0005391 A tail morphology phenotype where the virus has no tail. MiLaptop 2017-11-03T21:36:16Z microbial_phenotype OMP:0005392 absence of tail OMP:0005392 A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion. MiLaptop 2017-11-03T21:39:58Z microbial_phenotype OMP:0005393 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. pseudo tail morphology phenotype OMP:0005393 A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion. OMP:dr A capsid morphology phenotype where the capsid is shaped like a polyhedron which is a solid formed by plane faces. MiLaptop 2017-11-03T21:42:47Z microbial_phenotype OMP:0005394 polyhedral shape OMP:0005394 A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces. MiLaptop 2017-11-03T21:45:08Z microbial_phenotype OMP:0005395 icosahedral capsid shape OMP:0005395 A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces. OMP:dr A capsid morphology phenotype where the capsid is shaped isometrically which is a shape that is characterized by equality of measure. MiLaptop 2017-11-03T21:52:04Z microbial_phenotype OMP:0005396 isometric capsid OMP:0005396 A capsid morphology phenotype where the capsid is shaped like an octahedron which is a polyhedron with 8 plane faces. MiLaptop 2017-11-03T21:53:27Z microbial_phenotype OMP:0005397 octahedral capsid OMP:0005397 A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces. MiLaptop 2017-11-03T21:55:20Z microbial_phenotype OMP:0005398 dodecahedral capsid shape OMP:0005398 A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces. OMP:dr A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction. tkveton 2015-06-09T15:06:53Z microbial_phenotype OMP:0006000 secondary metabolite production phenotype OMP:0006000 A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction. APO:0000292 OMP:TCK A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control. jonathanherrera 2014-07-24T14:14:37Z microbial_phenotype OMP:0006001 altered chromosome segregation OMP:0006001 A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control. OMP:JCH A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control. jonathanherrera 2014-07-24T15:04:15Z microbial_phenotype OMP:0006002 altered homologous recombination OMP:0006002 A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control. OMP:JCH A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control. jonathanherrera 2014-07-24T15:10:50Z microbial_phenotype OMP:0006003 altered gene silencing OMP:0006003 A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control. OMP:JCH An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control. jonathanherrera 2014-03-26T21:33:14Z increased budding index microbial_phenotype OMP:0006004 increased budding OMP:0006004 An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control. OMP:WAM A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control. jonathanherrera 2014-07-24T15:21:56Z microbial_phenotype OMP:0006005 altered site-specific recombination OMP:0006005 A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control. OMP:JCH An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control. jonathanherrera 2014-03-26T21:33:14Z decreased budding index microbial_phenotype OMP:0006006 decreased budding OMP:0006006 An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control. OMP:WAM A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control. jonathanherrera 2014-07-24T16:24:44Z microbial_phenotype OMP:0006007 altered heterocyst formation OMP:0006007 A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control. OMP:JCH A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules. jonathanherrera 2014-04-01T14:18:12Z microbial_phenotype OMP:0006008 photosynthesis phenotype OMP:0006008 A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules. OMP:JCH A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control. jonathanherrera 2014-07-24T16:26:38Z microbial_phenotype OMP:0006009 altered myxospore formation OMP:0006009 A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control. OMP:JCH A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control. jonathanherrera 2014-07-24T16:28:24Z microbial_phenotype OMP:0006010 altered pilus phenotype OMP:0006010 A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control. OMP:JCH A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid. jonathanherrera 2014-04-30T22:47:51Z microbial_phenotype lantibiotic sensitivity phenotype OMP:0006011 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. lantibiotic resistance phenotype OMP:0006011 A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid. CHEBI:71644 OMP:WAM A lantibiotic resistance phenotype where resistance is decreased relative to a designated control. jonathanherrera 2014-04-30T22:48:59Z microbial_phenotype increased sensitivity to lantibiotic OMP:0006012 decreased resistance to lantibiotic OMP:0006012 A lantibiotic resistance phenotype where resistance is decreased relative to a designated control. OMP:WAM A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control. jonathanherrera 2014-07-24T16:30:53Z microbial_phenotype OMP:0006013 altered transposable element transposition phenotype OMP:0006013 A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control. OMP:JCH A lantibiotic resistance phenotype where resistance is increased relative to a designated control. jonathanherrera 2014-04-30T22:48:59Z microbial_phenotype decreased sensitivity to lantibiotic OMP:0006014 increased resistance to lantibiotic OMP:0006014 A lantibiotic resistance phenotype where resistance is increased relative to a designated control. OMP:WAM A transposable element transposition phenotype where a cell or cells have transposition of transposable elements. jonathanherrera 2014-07-24T16:34:28Z microbial_phenotype OMP:0006015 presence of transposable element transposition OMP:0006015 A transposable element transposition phenotype where a cell or cells have transposition of transposable elements. OMP:WAM A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements. jonathanherrera 2014-07-24T16:34:28Z microbial_phenotype OMP:0006016 absence of transposable element transposition OMP:0006016 A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements. OMP:WAM An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control. jonathanherrera 2014-07-24T17:04:53Z microbial_phenotype OMP:0006017 altered aminoglycoside resistance OMP:0006017 An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control. OMP:JCH An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control. jonathanherrera 2014-07-24T17:13:02Z microbial_phenotype OMP:0006018 altered aminopyrimidine resistance OMP:0006018 An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control. OMP:JCH An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control. jonathanherrera 2014-07-24T17:20:23Z microbial_phenotype OMP:0006019 altered azole resistance OMP:0006019 An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control. OMp:JCH A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control. jonathanherrera 2014-07-24T17:21:28Z microbial_phenotype OMP:0006020 altered bacteriocin resistance OMP:0006020 A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control. OMP:JCH A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control. jonathanherrera 2014-07-24T17:26:03Z microbial_phenotype OMP:0006021 altered beta-lactam resistance OMP:0006021 A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control. OMP:JCH A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture. jonathanherrera 2013-09-10T14:40:06Z microbial_phenotype OMP:0006022 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nutrient utilization phenotype OMP:0006022 A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture. ISBN:9780073402406 A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon. jonathanherrera 2013-09-10T17:51:21Z N-acetyl glucosamine acetate glucosamine glucose glycerol maltose succinate microbial_phenotype OMP:0006023 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. carbon source utilization phenotype OMP:0006023 A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon. OMP:DAS A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source. jonathanherrera 2013-09-10T18:39:02Z heterotrophy microbial_phenotype OMP:0006024 presence of organic carbon source utilization OMP:0006024 A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source. ISBN:9780073402406 OMP:DAS A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control. jonathanherrera 2014-07-24T17:39:51Z microbial_phenotype OMP:0006025 altered chloramphenicol resistance OMP:0006025 A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control. OMP:JCH A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen. jonathanherrera 2013-09-10T17:51:21Z NH4Cl (ammonia) microbial_phenotype OMP:0006026 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nitrogen source utilization phenotype OMP:0006026 A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen. OMP:DAS An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species. jonathanherrera 2013-10-04T16:57:43Z CHEBI:48081 colicins resistance phenotype fusidic acid resistance phenotype iantibiotic resistance phenotype microcin resistance phenotype nisin resistance phenotype subtilin resistance phenotype type A lantibiotic resistance phenotype type B lantibiotic resistance phenotype microbial_phenotype bacteriocin sensitivity phenotype OMP:0006027 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bacteriocin resistance phenotype OMP:0006027 An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species. CHEBI:48081 OMP:JCH CHEBI:48081 bacteriocin colicins resistance phenotype GO:0015468 fusidic acid resistance phenotype CHEBI:29013 iantibiotic resistance phenotype CHEBI:71644 microcin resistance phenotype CHEBI:64627 nisin resistance phenotype ChEBI:71629 subtilin resistance phenotype Bactibase:BAC045 type A lantibiotic resistance phenotype CHEBI:71645 type B lantibiotic resistance phenotype CHEBI:71647 An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen. jonathanherrera 2013-10-10T19:15:32Z CHEBI:68452 benomyl resistance phenotype fluconazole resistance phenotype itraconazole resistance phenotype ketoconazole resistance phenotype miconazole resistance phenotype posaconazole resistance phenotype thiabendazole resistance phenotype triazole resistance phenotype voriconazole resistance phenotype microbial_phenotype azole sensitivity phenotype OMP:0006028 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen. A mancude ring has the maximum number of noncumulative double bonds, e.g. benzene, indole. azole antimicrobial agent resistance phenotype OMP:0006028 An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen. CHEBI:68452 OMP:DAS CHEBI:68452 azole benomyl resistance phenotype CHEBI:3015 fluconazole resistance phenotype CHEBI:46081 itraconazole resistance phenotype CHEBI:6076 ketoconazole resistance phenotype CHEBI:47519 miconazole resistance phenotype CHEBI:6923 posaconazole resistance phenotype CHEBI:64355 thiabendazole resistance phenotype CHEBI:45979 triazole resistance phenotype CHEBI:38597 voriconazole resistance phenotype CHEBI:10023 An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure. jonathanherrera 2013-10-10T19:15:32Z quinolines CHEBI:23765 streptonigrin ciprofloxacin resistance phenotype dibucaine resistance phenotype doxorubicin resistance phenotype levofloxacin resistance phenotype nalidixic acid resistance phenotype norfloxacin resistance phenotype microbial_phenotype quinolone sensitivity phenotype OMP:0006029 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Quinolones are a class of quinolines, which are aromatic heterocyclic compounds that contain a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring. quinolone resistance phenotype OMP:0006029 An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure. CHEBI:23765 OMP:JCH quinolines CHEBI:26513 CHEBI:23765 quinolone streptonigrin CHEBI:9287 ciprofloxacin resistance phenotype CHEBI:100241 dibucaine resistance phenotype CHEBI:247956 doxorubicin resistance phenotype CHEBI:28748 levofloxacin resistance phenotype CHEBI:63598 nalidixic acid resistance phenotype CHEBI:100147 norfloxacin resistance phenotype CHEBI:100246 A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen. jonathanherrera 2013-09-10T17:54:07Z microbial_phenotype diatomic nitrogen utilization phenotype nitrogen fixation phenotype OMP:0006030 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. dinitrogen utilization phenotype OMP:0006030 A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen. OMP:DAS A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control. jonathanherrera 2014-07-24T17:40:33Z microbial_phenotype OMP:0006031 altered resistance to macrolide OMP:0006031 A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control. OMP:JCH A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control. jonathanherrera 2014-07-24T17:42:30Z microbial_phenotype OMP:0006032 altered pteridine resistance OMP:0006032 A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control. OMP:JCH An lifespan phenotype that is altered relative to a designated control. jonathanherrera 2014-07-24T17:52:43Z microbial_phenotype OMP:0006033 altered lifespan phenotype OMP:0006033 An lifespan phenotype that is altered relative to a designated control. OMP:JCH A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control. jonathanherrera 2014-07-24T17:57:37Z microbial_phenotype OMP:0006034 altered stress-induced mutagenesis OMP:0006034 A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control. OMP:JCH A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control. jonathanherrera 2014-07-24T18:10:38Z microbial_phenotype OMP:0006035 altered budding OMP:0006035 A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control. OMP:JCH A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control. jonathanherrera 2013-10-11T17:35:04Z microbial_phenotype increased sensitivity to macrolide OMP:0006036 decreased resistance to macrolide OMP:0006036 A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control. OMP:JCH A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control. jonathanherrera 2013-10-11T17:35:04Z microbial_phenotype decreased sensitivity to macrolide OMP:0006037 increased resistance to macrolide OMP:0006037 A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control. OMP:JCH A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds. jonathanherrera 2013-10-11T17:35:04Z microbial_phenotype sensitivity to macrolide OMP:0006038 not resistant to macrolide OMP:0006038 A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds. OMP:JCH A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds. jonathanherrera 2013-10-11T17:35:04Z microbial_phenotype OMP:0006039 resistant to macrolide OMP:0006039 A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds. OMP:JCH A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control. jonathanherrera 2013-10-11T17:38:00Z microbial_phenotype increased sensitivity to quinoline OMP:0006040 decreased resistance to quinolone OMP:0006040 A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control. OMP:JCH A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control. jonathanherrera 2013-10-11T17:38:00Z microbial_phenotype decreased sensitivity to quinoline OMP:0006041 increased resistance to quinolone OMP:0006041 A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control. OMP:JCH A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds. jonathanherrera 2013-10-11T17:38:00Z microbial_phenotype sensitivity to quinolone OMP:0006042 not resistant to quinolone OMP:0006042 A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds. OMp:JCH A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds. jonathanherrera 2013-10-11T17:38:00Z microbial_phenotype OMP:0006043 resistant to quinolone OMP:0006043 A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds. OMP:JCH A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control. jonathanherrera 2013-10-11T17:40:34Z microbial_phenotype increased sensitivity to beta-lactam OMP:0006044 decreased resistance to beta-lactam OMP:0006044 A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control. OMP:JCH A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control. jonathanherrera 2013-10-11T17:40:34Z microbial_phenotype decreased sensitivity to beta-lactam OMP:0006045 increased resistance to beta-lactam compound OMP:0006045 A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control. OMP:JCH A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds. jonathanherrera 2013-10-11T17:40:34Z microbial_phenotype beta-lactam sensitivity OMP:0006046 not resistant to beta-lactam OMP:0006046 A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds. OMP:JCH An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds. jonathanherrera 2013-10-11T17:40:34Z microbial_phenotype OMP:0006047 resistant to beta-lactam OMP:0006047 An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds. OMP:JCH An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control. jonathanherrera 2013-10-11T17:44:39Z microbial_phenotype increased sensitivity to bacteriocin OMP:0006048 decreased resistance to bacteriocin OMP:0006048 An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control. OMP:JCH A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control. jonathanherrera 2013-10-11T17:44:39Z microbial_phenotype decreased sensitivity to a bacteriocin OMP:0006049 increased resistance to bacteriocin OMP:0006049 A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control. OMP:JCH A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins. jonathanherrera 2013-10-11T17:44:39Z microbial_phenotype bacteriocin sensitivity OMP:0006050 not resistant to bacteriocin OMP:0006050 A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins. OMP:JCH A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins. jonathanherrera 2013-10-11T17:44:39Z microbial_phenotype OMP:0006051 resistant to bacteriocin OMP:0006051 A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins. OMP:JCH An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control. jonathanherrera 2013-10-11T17:45:44Z microbial_phenotype increased sensitivity to azole OMP:0006052 decreased resistance to azole OMP:0006052 An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control. OMP:DAS An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control. jonathanherrera 2013-10-11T17:45:44Z microbial_phenotype decreased sensitivity to azole OMP:0006053 increased resistance to azole compound OMP:0006053 An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control. OMP:DAS An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds. jonathanherrera 2013-10-11T17:45:44Z microbial_phenotype azole sensitivity OMP:0006054 not resistant to azole OMP:0006054 An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds. OMP:DAS An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds. jonathanherrera 2013-10-11T17:45:44Z microbial_phenotype OMP:0006055 resistant to azole OMP:0006055 An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds. OMP:DAS An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars. jonathanherrera 2013-10-22T13:29:22Z CHEBI:47779 amikacin resistance phenotype gentamicin resistance phenotype hygromycin B resistance phenotype kanamycin resistance phenotype neomycin resistance phenotype spectinomycin resistance phenotype streptomycin resistance phenotype tobramycin resistance phenotype microbial_phenotype aminoglycoside sensitivity phenotype OMP:0006056 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. aminoglycoside antimicrobial agent resistance phenotype OMP:0006056 An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars. CHEBI:47779 OMP:JCH CHEBI:47779 aminoglycoside amikacin resistance phenotype CHEBI:2673 gentamicin resistance phenotype CHEBI:5312 hygromycin B resistance phenotype CHEBI:16976 kanamycin resistance phenotype CHEBI:6104 neomycin resistance phenotype CHEBI:7508 spectinomycin resistance phenotype CHEBI:32158 streptomycin resistance phenotype CHEBI:17076 tobramycin resistance phenotype CHEBI:28864 An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control. jonathanherrera 2013-10-22T19:24:20Z microbial_phenotype increased sensitivity to aminoglycoside OMP:0006057 decreased resistance to aminoglycoside OMP:0006057 An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control. OMP:JCH An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control. jonathanherrera 2013-10-22T19:24:20Z microbial_phenotype decreased sensitivity to aminoglycoside OMP:0006058 increased resistance to aminoglycoside OMP:0006058 An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control. OMP:JCH An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides. jonathanherrera 2013-10-22T19:24:20Z microbial_phenotype aminoglycoside sensitivity OMP:0006059 not resistant to aminoglycoside OMP:0006059 An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides. OMP:JCH An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds. jonathanherrera 2013-10-22T19:24:20Z microbial_phenotype OMP:0006060 resistant to aminoglycoside OMP:0006060 An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds. OMP:JCH A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control. jonathanherrera 2013-10-23T19:27:35Z microbial_phenotype increased sensitivity to tetracycline OMP:0006061 decreased resistance to tetracycline OMP:0006061 A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control. OMP:JCH An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton. jonathanherrera 2013-10-23T17:21:25Z bacteriostatic resistance phenotype CHEBI:27902 chlortetracycline resistance phenotype doxycycline resistance phenotype minocycline resistance phenotype oxytetracycline resistance phenotype microbial_phenotype tetracycline sensitivity phenotype OMP:0006062 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. tetracycline resistance phenotype OMP:0006062 An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton. CHEBI:27902 OMP:JCH doxycycline resistance phenotype CHEBI:50845 minocycline resistance phenotype CHEBI:50694 oxytetracycline resistance phenotype CHEBI:27701 A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control. jonathanherrera 2013-10-23T19:27:35Z microbial_phenotype decreased sensitivity to tetracycline OMP:0006063 increased resistance to tetracycline OMP:0006063 A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control. OMP:JCH A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines. jonathanherrera 2013-10-23T19:27:35Z microbial_phenotype sensitivity to tetracycline OMP:0006064 not resistant to tetracycline OMP:0006064 A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines. OMP:JCH A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds. jonathanherrera 2013-10-23T19:27:35Z microbial_phenotype OMP:0006065 resistant to tetracycline OMP:0006065 A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds. OMP:JCH An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions. jonathanherrera 2013-10-24T12:57:25Z CHEBI:17698 microbial_phenotype chloramphenicol sensitivity phenotype OMP:0006066 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chloramphenicol resistance phenotype OMP:0006066 An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions. CHEBI:17698 OMP:JCH CHEBI:17698 chloramphenicol A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control. jonathanherrera 2013-10-24T19:41:11Z microbial_phenotype increased sensitivity to chloramphenicol OMP:0006067 decreased resistance to chloramphenicol OMP:0006067 A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control. OMP:JCH A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control. jonathanherrera 2013-10-24T19:41:11Z decreased sensitivity to chloramphenicol microbial_phenotype OMP:0006068 increased resistance to chloramphenicol OMP:0006068 A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control. OMP:JCH A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol. jonathanherrera 2013-10-24T19:41:11Z microbial_phenotype chloramphenicol sensitivity OMP:0006069 not resistant to chloramphenicol OMP:0006069 A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol. OMP:JCH A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol. jonathanherrera 2013-10-24T19:41:11Z microbial_phenotype OMP:0006070 resistant to chloramphenicol OMP:0006070 A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol. OMP:JCH A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control. jonathanherrera 2014-07-24T18:18:59Z microbial_phenotype OMP:0006071 altered mutation frequency OMP:0006071 A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control. OMP:JCH A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics. jonathanherrera 2014-04-30T22:48:59Z microbial_phenotype sensitive to lantibiotic OMP:0006072 not resistant to lantibiotic OMP:0006072 A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics. OMP:WAM A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds. jonathanherrera 2014-04-30T22:48:59Z microbial_phenotype OMP:0006073 resistant to lantibiotic OMP:0006073 A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds. OMP:WAM A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control. jonathanherrera 2014-05-12T13:04:39Z microbial_phenotype decreased sensitivity to pteridine OMP:0006074 increased resistance to pteridine OMP:0006074 A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control. CHEBI:27601 OMP:DAS A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds. jonathanherrera 2014-05-12T13:04:40Z microbial_phenotype sensitivity to pteridine OMP:0006075 not resistant to pteridine OMP:0006075 A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds. CHEBI:27601 OMP:JCH A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds. jonathanherrera 2014-05-12T13:04:40Z microbial_phenotype OMP:0006076 resistant to pteridine OMP:0006076 A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds. CHEBI:27601 OMP:JCH A catalase test phenotype where catalase activity is altered relative to a designated control. jonathanherrera 2014-07-15T14:55:03Z microbial_phenotype OMP:0006077 altered catalase test result OMP:0006077 A catalase test phenotype where catalase activity is altered relative to a designated control. OMP:JCH A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity. jonathanherrera 2014-07-15T19:59:58Z microbial_phenotype OMP:0006078 decarboxylase negative OMP:0006078 A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity. OMP:JCH A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control. jonathanherrera 2014-07-15T19:59:58Z microbial_phenotype OMP:0006079 altered decarboxylase test result OMP:0006079 A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control. OMP:JCH A decarboxylase test phenotype where an organism exhibits decarboxylase activity. jonathanherrera 2014-07-15T19:59:58Z microbial_phenotype OMP:0006080 decarboxylase positive OMP:0006080 A decarboxylase test phenotype where an organism exhibits decarboxylase activity. OMP:JCH An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control. jonathanherrera 2014-07-15T20:00:41Z microbial_phenotype OMP:0006081 increased decarboxylase activity OMP:0006081 An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control. OMP:JCH An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control. jonathanherrera 2014-07-15T20:00:41Z microbial_phenotype OMP:0006082 decreased decarboxylase activity OMP:0006082 An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control. OMP:JCH An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control. jonathanherrera 2014-07-15T20:06:25Z microbial_phenotype OMP:0006083 altered oxidase test result OMP:0006083 An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control. OMP:JCH An oxidase test phenotype where an organism doesn't exhibit oxidase activity. jonathanherrera 2014-07-15T20:06:25Z microbial_phenotype oxidase deficient OMP:0006084 oxidase negative OMP:0006084 An oxidase test phenotype where an organism doesn't exhibit oxidase activity. OMP:JCH An oxidase test phenotype where an organism exhibits oxidase activity. jonathanherrera 2014-07-15T20:06:25Z microbial_phenotype OMP:0006085 oxidase positive OMP:0006085 An oxidase test phenotype where an organism exhibits oxidase activity. OMP:JCH An altered oxidase test phenotype where oxidase activity is increased relative to a designated control. jonathanherrera 2014-07-15T20:06:48Z microbial_phenotype OMP:0006086 increased oxidase activity OMP:0006086 An altered oxidase test phenotype where oxidase activity is increased relative to a designated control. OMP:JCH An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control. jonathanherrera 2014-07-15T20:06:48Z microbial_phenotype OMP:0006087 decreased oxidase activity OMP:0006087 An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control. OMP:JCH A urease test phenotype where urease activity is altered relative to a designated control. jonathanherrera 2014-07-15T20:07:31Z microbial_phenotype OMP:0006088 altered urease test result OMP:0006088 A urease test phenotype where urease activity is altered relative to a designated control. OMP:JCH A urease test phenotype where an organism exhibits urease activity. jonathanherrera 2014-07-15T20:07:31Z microbial_phenotype OMP:0006089 urease positive OMP:0006089 A urease test phenotype where an organism exhibits urease activity. OMP:JCH A urease test phenotype where an organism doesn't exhibit urease activity. jonathanherrera 2014-07-15T20:07:31Z microbial_phenotype urease deficient OMP:0006090 urease negative OMP:0006090 A urease test phenotype where an organism doesn't exhibit urease activity. OMP:JCH An altered urease activity phenotype where urease activity is increased relative to a designated control. jonathanherrera 2014-07-15T20:07:54Z microbial_phenotype OMP:0006091 increased urease activity OMP:0006091 An altered urease activity phenotype where urease activity is increased relative to a designated control. OMP:JCH An altered urease activity phenotype where there urease activity is decreased relative to a designated control. jonathanherrera 2014-07-15T20:07:54Z microbial_phenotype OMP:0006092 decreased urease activity OMP:0006092 An altered urease activity phenotype where there urease activity is decreased relative to a designated control. OMP:JCH A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control. jonathanherrera 2014-07-24T18:43:39Z microbial_phenotype OMP:0006093 altered quorum sensing phenotype OMP:0006093 A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control. OMP:JCH A decreased decarboxylase activity phenotype where decarboxylase activity is abolished. jonathanherrera 2014-07-24T20:05:39Z microbial_phenotype OMP:0006094 abolished decarboxylase activity OMP:0006094 A decreased decarboxylase activity phenotype where decarboxylase activity is abolished. OMP:JCH A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished. jonathanherrera 2014-07-24T20:09:28Z microbial_phenotype OMP:0006095 abolished enzymatic activity OMP:0006095 A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished. OMP:JCH A decreased oxidase activity phenotype where oxidase activity is abolished. jonathanherrera 2014-07-24T20:11:44Z microbial_phenotype OMP:0006096 abolished oxidase activity OMP:0006096 A decreased oxidase activity phenotype where oxidase activity is abolished. OMP:JCH A decreased urease activity phenotype where urease activity is abolished. jonathanherrera 2014-07-24T20:17:01Z microbial_phenotype OMP:0006097 abolished urease activity OMP:0006097 A decreased urease activity phenotype where urease activity is abolished. OMP:JCH A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished. jonathanherrera 2014-07-24T20:18:01Z microbial_phenotype OMP:0006098 abolished aerotaxis OMP:0006098 A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished. OMP:JCH A decreased budding phenotype where the fraction of budding cells is decreased to zero. jonathanherrera 2014-07-25T11:08:59Z microbial_phenotype OMP:0006099 abolished budding OMP:0006099 A decreased budding phenotype where the fraction of budding cells is decreased to zero. OMP:JCH A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished. jonathanherrera 2014-08-15T19:12:43Z microbial_phenotype OMP:0006100 abolished motility by swimming OMP:0006100 A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished. OMP:JCH A caffeine resistance phenotype where resistance to caffeine is abolished. jonathanherrera 2014-07-25T11:40:57Z microbial_phenotype OMP:0006101 abolished caffeine resistance OMP:0006101 A caffeine resistance phenotype where resistance to caffeine is abolished. OMP:JCH A decreased amount of capsule phenotype where capsule is abolished. jonathanherrera 2014-07-25T11:52:24Z microbial_phenotype OMP:0006102 abolished capsule formation OMP:0006102 A decreased amount of capsule phenotype where capsule is abolished. OMP:JCH A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished. jonathanherrera 2014-07-25T11:54:11Z microbial_phenotype OMP:0006103 abolished organic carbon source utilization OMP:0006103 A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished. OMP:JCH A decreased catalase activity phenotype where catalase activity is abolished. jonathanherrera 2014-07-25T11:59:12Z microbial_phenotype OMP:0006104 abolished catalase activity OMP:0006104 A decreased catalase activity phenotype where catalase activity is abolished. OMP:JCH A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa. tkveton 2015-06-09T15:14:37Z microbial_phenotype OMP:0006105 antimicrobial peptide production phenotype OMP:0006105 A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa. GO:0000276 OMP:TCK An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control. tkveton 2015-06-09T15:16:13Z microbial_phenotype OMP:0006106 altered antimicrobial peptide production OMP:0006106 An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control. OMP:TCK A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles. jonathanherrera 2014-07-28T18:19:45Z vesiculation microbial_phenotype OMP:0006107 presence of outer membrane vesicles OMP:0006107 A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles. OMP:JCH A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished. jonathanherrera 2014-07-25T12:11:10Z microbial_phenotype OMP:0006108 abolished chemotaxis OMP:0006108 A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished. OMP:JCH A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles. jonathanherrera 2014-07-28T18:19:45Z microbial_phenotype OMP:0006109 absence of outer membrane vesicles OMP:0006109 A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles. OMP:JCH A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished. jonathanherrera 2014-07-25T12:21:50Z microbial_phenotype OMP:0006110 abolished endospore formation OMP:0006110 A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished. OMP:JCH A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished. jonathanherrera 2014-07-25T12:24:27Z microbial_phenotype OMP:0006111 abolished chromosome segregation OMP:0006111 A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished. OMP:JCH A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished. jonathanherrera 2014-07-25T12:40:10Z microbial_phenotype OMP:0006112 abolished gene silencing OMP:0006112 A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished. OMP:JCH A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished. jonathanherrera 2014-07-25T12:45:20Z microbial_phenotype OMP:0006113 abolished homologous recombination OMP:0006113 A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished. OMP:JCH A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished. jonathanherrera 2014-07-25T12:47:43Z microbial_phenotype OMP:0006114 abolished site-specific recombination OMP:0006114 A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished. OMP:JCH A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control. jonathanherrera 2014-07-25T12:50:04Z microbial_phenotype OMP:0006115 abolished gene expression OMP:0006115 A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control. OMP:JCH An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished. jonathanherrera 2014-07-25T12:58:01Z microbial_phenotype OMP:0006116 abolished population growth at acidic pH OMP:0006116 An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished. OMP:DAS An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished. jonathanherrera 2014-07-25T13:02:17Z microbial_phenotype OMP:0006117 abolished population growth at alkaline pH OMP:0006117 An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished. OMP:JCH An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control. tkveton 2015-06-09T15:17:23Z microbial_phenotype OMP:0006118 decreased antimicrobial peptide production OMP:0006118 An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control. OMP:TCK A decreased hemolysis phenotype where hemolysis is abolished. jonathanherrera 2014-07-25T13:17:12Z microbial_phenotype OMP:0006119 abolished hemolysis OMP:0006119 A decreased hemolysis phenotype where hemolysis is abolished. OMP:JCH A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished. jonathanherrera 2014-07-25T13:19:17Z microbial_phenotype OMP:0006120 abolished heterocyst formation OMP:0006120 A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished. OMP:JCH A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished. jonathanherrera 2014-07-25T13:22:37Z microbial_phenotype OMP:0006121 abolished induced expression of the SOS response OMP:0006121 A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished. OMP:JCH A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished. jonathanherrera 2014-07-25T13:24:16Z microbial_phenotype OMP:0006122 abolished uninduced expression of the SOS response OMP:0006122 A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished. OMP:JCH A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished. jonathanherrera 2014-07-25T13:27:32Z microbial_phenotype OMP:0006123 abolished mitotic recombination OMP:0006123 A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished. OMP:JCH A decreased mutation frequency phenotype where mutations no longer occur. **This term was made obsolete because it describes a phenotype that is unlikely to occur in nature. jonathanherrera 2014-07-25T14:05:31Z microbial_phenotype OMP:0006124 This term was made obsolete because it describes a phenotype that is unlikely to occur in nature. abolished mutation frequency true OMP:0006124 A decreased mutation frequency phenotype where mutations no longer occur. **This term was made obsolete because it describes a phenotype that is unlikely to occur in nature. OMP:JCH A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished. jonathanherrera 2014-07-25T14:07:02Z microbial_phenotype OMP:0006125 abolished myxospore formation OMP:0006125 A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished. OMP:JCH A DNA supercoiling phenotype where supercoiling is altered relative to a designated control. jonathanherrera 2014-07-25T14:11:37Z microbial_phenotype OMP:0006126 altered DNA supercoiling OMP:0006126 A DNA supercoiling phenotype where supercoiling is altered relative to a designated control. OMP:JCH A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished. jonathanherrera 2014-07-25T14:16:09Z microbial_phenotype OMP:0006127 abolished negative DNA supercoiling OMP:0006127 A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished. OMP:JCH A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished. jonathanherrera 2014-07-25T14:16:27Z microbial_phenotype OMP:0006128 abolished positive DNA supercoiling OMP:0006128 A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished. OMP:JCH A DNA supercoiling phenotype where negative supercoiling is absent. jonathanherrera 2014-07-25T14:32:08Z microbial_phenotype OMP:0006129 absence of negative supercoiling OMP:0006129 A DNA supercoiling phenotype where negative supercoiling is absent. OMP:JCH A DNA supercoiling phenotype where positive supercoiling is absent. jonathanherrera 2014-07-25T14:32:42Z microbial_phenotype OMP:0006130 absence of positive supercoiling OMP:0006130 A DNA supercoiling phenotype where positive supercoiling is absent. OMP:JCH A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero. jonathanherrera 2014-07-25T14:43:31Z microbial_phenotype OMP:0006131 abolished flagella OMP:0006131 A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero. OMP:JCH A decreased number of pili phenotype where the number of pili is decreased to zero. jonathanherrera 2014-07-25T14:46:12Z microbial_phenotype OMP:0006132 abolished number of pili OMP:0006132 A decreased number of pili phenotype where the number of pili is decreased to zero. OMP:JCH A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished. jonathanherrera 2014-07-25T14:47:24Z microbial_phenotype OMP:0006133 abolished purine requirement OMP:0006133 A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished. OMP:JCH A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished. jonathanherrera 2014-07-25T14:49:11Z microbial_phenotype OMP:0006134 abolished quorum sensing OMP:0006134 A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished. OMP:JCH A decreased biofilm formation phenotype where the ability to form a biofilm is abolished. jonathanherrera 2014-07-25T14:50:55Z microbial_phenotype OMP:0006135 abolished biofilm formation OMP:0006135 A decreased biofilm formation phenotype where the ability to form a biofilm is abolished. OMP:JCH A decreased rate of transposition phenotype where the ability to perform transposition is abolished. jonathanherrera 2014-07-25T14:52:06Z microbial_phenotype OMP:0006136 abolished transposition OMP:0006136 A decreased rate of transposition phenotype where the ability to perform transposition is abolished. OMP:JCH A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished. jonathanherrera 2014-07-25T14:54:43Z microbial_phenotype OMP:0006137 abolished resistance to aminoglycoside OMP:0006137 A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished. OMP:JCH A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished. jonathanherrera 2014-07-25T14:59:06Z microbial_phenotype OMP:0006138 abolished resistance to aminopyrimidine OMP:0006138 A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished. OMP:JCH A decreased resistance to azole phenotype where resistance to azole is abolished. jonathanherrera 2014-07-25T15:00:48Z microbial_phenotype OMP:0006139 abolished resistance to azole OMP:0006139 A decreased resistance to azole phenotype where resistance to azole is abolished. OMP:JCH A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished. jonathanherrera 2014-07-25T15:02:13Z microbial_phenotype OMP:0006140 abolished resistance to bacteriocin OMP:0006140 A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished. OMP:JCH A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished. jonathanherrera 2014-07-25T15:04:08Z microbial_phenotype OMP:0006141 abolished resistance to beta-lactam OMP:0006141 A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished. OMP:JCh A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished. jonathanherrera 2014-07-25T15:05:24Z microbial_phenotype OMP:0006142 abolished resistance to chloramphenicol OMP:0006142 A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished. OMP:JCH A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished. jonathanherrera 2014-07-25T15:07:57Z microbial_phenotype OMP:0006143 abolished resistance to lantibiotic OMP:0006143 A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished. OMP:JCh A decreased resistance to macrolide phenotype where resistance to macrolides is abolished. jonathanherrera 2014-07-25T15:09:24Z microbial_phenotype OMP:0006144 abolished resistance to macrolide OMP:0006144 A decreased resistance to macrolide phenotype where resistance to macrolides is abolished. OMP:JCH A decreased resistance to pteridine phenotype where resistance to pteridine is abolished. jonathanherrera 2014-07-25T15:11:04Z microbial_phenotype OMP:0006145 abolished resistance to pteridine OMP:0006145 A decreased resistance to pteridine phenotype where resistance to pteridine is abolished. OMP:JCH A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished. jonathanherrera 2014-07-25T15:12:28Z microbial_phenotype OMP:0006146 abolished resistance to quinolone OMP:0006146 A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished. OMP:JCH A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished. jonathanherrera 2014-07-25T15:18:09Z microbial_phenotype OMP:0006147 abolished resistance to tetracycline OMP:0006147 A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished. OMP:JCH A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished. jonathanherrera 2014-07-25T15:19:48Z microbial_phenotype OMP:0006148 abolished stress-induced mutagenesis OMP:0006148 A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished. OMP:JCH A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished. jonathanherrera 2014-07-25T15:22:06Z microbial_phenotype OMP:0006149 abolished utilization of dinitrogen OMP:0006149 A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished. OMP:JCH A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen. jonathanherrera 2014-07-25T15:23:03Z microbial_phenotype OMP:0006150 abolished utilization of inorganic nitrogen OMP:0006150 A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen. OMP:JCH A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished. jonathanherrera 2014-07-25T15:31:15Z microbial_phenotype OMP:0006151 abolished utilization of inorganic phosphorus OMP:0006151 A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished. OMP:JCH A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished. jonathanherrera 2014-07-25T15:33:11Z microbial_phenotype OMP:0006152 abolished utilization of inorganic sulfur OMP:0006152 A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished. OMP:JCH An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished. jonathanherrera 2014-07-25T15:36:09Z microbial_phenotype OMP:0006153 abolished utilization of organic nitrogen OMP:0006153 An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished. OMP:JCH A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished. jonathanherrera 2014-07-25T15:37:42Z microbial_phenotype OMP:0006154 abolished utilization of organic phosphorus OMP:0006154 A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished. OMP:JCH A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished. jonathanherrera 2014-07-25T15:40:13Z microbial_phenotype OMP:0006155 abolished utilization of organic sulfur OMP:0006155 A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished. OMP:JCH An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control. jonathanherrera 2014-07-28T18:44:09Z microbial_phenotype OMP:0006156 altered outer membrane vesicles OMP:0006156 An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control. OMP:JCH A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished. jonathanherrera 2014-07-25T15:43:18Z microbial_phenotype OMP:0006157 abolished vitamin/enzyme cofactor requirement OMP:0006157 A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished. OMP:JCH An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control. jonathanherrera 2014-07-28T18:45:05Z hyper-vesiculating microbial_phenotype OMP:0006158 increased outer membrane vesicle production OMP:0006158 An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control. OMP:JCH An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control. jonathanherrera 2014-07-28T18:45:05Z microbial_phenotype OMP:0006159 decreased outer membrane vesicle production OMP:0006159 An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control. OMP:JCH A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished. jonathanherrera 2014-07-28T20:49:39Z microbial_phenotype OMP:0006160 abolished outer membrane vesicle OMP:0006160 A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished. OMP:JCH A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control. jonathanherrera 2014-07-29T15:37:45Z microbial_phenotype OMP:0006161 altered endospore formation OMP:0006161 A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control. OMP:JCH A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control. jonathanherrera 2014-07-29T18:03:06Z microbial_phenotype OMP:0006162 altered nanotube phenotype OMP:0006162 A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control. OMP:JCH A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron. jonathanherrera 2014-08-05T13:35:01Z microbial_phenotype OMP:0006163 presence of heme utilization OMP:0006163 A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron. OMP:JCH An colony size phenotype where size is altered relative to a designated control. jonathanherrera 2014-08-05T13:44:09Z microbial_phenotype OMP:0006164 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered colony size phenotype OMP:0006164 An colony size phenotype where size is altered relative to a designated control. OMP:JCH An akinete morphology phenotype where the organism forms a cylindrical akinete. jonathanherrera 2014-08-06T17:30:58Z microbial_phenotype OMP:0006165 cylindrical akinete OMP:0006165 An akinete morphology phenotype where the organism forms a cylindrical akinete. OMP:JCH A binary fission phenotype where an organism multiplies by the process of binary fission. jonathanherrera 2014-08-08T15:51:18Z microbial_phenotype OMP:0006166 presence of binary fission OMP:0006166 A binary fission phenotype where an organism multiplies by the process of binary fission. OMP:JCH A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished. jonathanherrera 2014-08-13T17:25:47Z microbial_phenotype OMP:0006167 abolished motility by swarming OMP:0006167 A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished. OMP:JCH A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control. jonathanherrera 2014-08-08T15:59:42Z microbial_phenotype OMP:0006168 altered binary fission OMP:0006168 A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control. OMP:JCH An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control. jonathanherrera 2014-08-08T16:01:46Z microbial_phenotype OMP:0006169 increased binary fission OMP:0006169 An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control. OMP:JCH An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control. jonathanherrera 2014-08-08T16:01:46Z microbial_phenotype OMP:0006170 decreased binary fission OMP:0006170 An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control. OMP:JCH A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished. jonathanherrera 2014-08-08T16:01:54Z microbial_phenotype OMP:0006171 abolished binary fission OMP:0006171 A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished. OMP:JCH An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control. tkveton 2015-06-09T15:17:53Z microbial_phenotype OMP:0006172 increased antimicrobial peptide production OMP:0006172 An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control. OMP:TCK A multiple fission phenotype where an organism reproduces by the process of multiple fission. jonathanherrera 2014-08-08T16:42:12Z microbial_phenotype OMP:0006173 presence of multiple fission OMP:0006173 A multiple fission phenotype where an organism reproduces by the process of multiple fission. OMP:JCH A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control. jonathanherrera 2014-08-08T16:42:12Z microbial_phenotype OMP:0006174 altered multiple fission OMP:0006174 A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control. OMP:JCH An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control. jonathanherrera 2014-08-08T16:46:45Z microbial_phenotype OMP:0006175 decreased multiple fission OMP:0006175 An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control. OMP:JCH An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control. jonathanherrera 2014-08-08T16:46:45Z microbial_phenotype OMP:0006176 increased multiple fission OMP:0006176 An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control. OMP:JCH A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished. jonathanherrera 2014-08-08T16:49:27Z microbial_phenotype OMP:0006177 abolished multiple fission OMP:0006177 A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished. OMP:JCH An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished. tkveton 2015-06-09T15:18:24Z microbial_phenotype OMP:0006178 abolished antimicrobial peptide production OMP:0006178 An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished. OMP:TCK An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide. tkveton 2015-06-09T15:19:02Z microbial_phenotype OMP:0006179 presence of antimicrobial peptide production OMP:0006179 An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide. OMP:TCK An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide. tkveton 2015-06-09T15:19:38Z microbial_phenotype OMP:0006180 absence of antimicrobial peptide production OMP:0006180 An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide. OMP:TCK A decreased motility phenotype where the ability of a microbe to be motile is abolished. siegele 2014-06-29T14:10:40Z microbial_phenotype OMP:0007000 abolished motility OMP:0007000 A decreased motility phenotype where the ability of a microbe to be motile is abolished. OMP:JCH A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control. siegele 2014-04-24T17:38:06Z microbial_phenotype OMP:0007001 altered motility OMP:0007001 A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control. OMP:DAS An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control. siegele 2013-09-05T16:08:29Z microbial_phenotype OMP:0007002 decreased positive supercoiling OMP:0007002 An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control. OMP:WAM An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control. siegele 2013-09-05T16:09:28Z microbial_phenotype OMP:0007003 increased positive supercoiling OMP:0007003 An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control. OMP:WAM A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control. DeborahSiegele 2014-01-31T18:03:55Z microbial_phenotype increased sensitivity to pteridine OMP:0007004 decreased resistance to pteridine OMP:0007004 A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control. CHEBI:27601 OMP:DAS A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control. dsiegele 2014-08-07T18:35:51Z microbial_phenotype OMP:0007005 decreased negative chemotaxis OMP:0007005 A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS A microbial phenotype where the phenotype is observed at the level of a microbial population. siegele 2014-07-21T10:25:43Z OBI:0000181 microbial_phenotype OMP:0007006 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. population phenotype OMP:0007006 A microbial phenotype where the phenotype is observed at the level of a microbial population. OMP:DAS OBI:0000181 population A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment. siegele 2014-07-31T16:11:22Z GO:0098657 microbial_phenotype OMP:0007007 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nutrient import phenotype OMP:0007007 A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment. OMP:DAS GO:0098657 import into cell An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control. siegele 2013-09-11T17:11:01Z microbial_phenotype OMP:0007008 decreased population growth at acidic pH OMP:0007008 An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control. OMP:DAS An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control. siegele 2013-09-11T17:11:44Z microbial_phenotype OMP:0007009 increased population growth at acidic pH OMP:0007009 An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control. OMP:DAS An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control. siegele 2013-09-11T17:14:28Z microbial_phenotype OMP:0007010 decreased population growth at alkaline pH OMP:0007010 An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control. OMP:DAS An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control. siegele 2013-09-11T17:14:56Z microbial_phenotype OMP:0007011 increased population growth at alkaline pH OMP:0007011 An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control. OMP:DAS A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source. siegele 2013-09-13T15:10:16Z autotrophy microbial_phenotype OMP:0007012 presence of inorganic carbon source utilization OMP:0007012 A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source. ISBN:9780073402406 OMP:DAS A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen. siegele 2013-09-13T15:19:33Z nitrate utilization, phenotype microbial_phenotype OMP:0007013 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. inorganic nitrogen source utilization phenotype OMP:0007013 A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen. OMP:DAS A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen. siegele 2013-09-13T15:20:24Z microbial_phenotype OMP:0007014 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. organic nitrogen source utilization phenotype OMP:0007014 A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen. OMP:DAS A nutrient uptake phenotype that is altered relative to a designated control. siegele 2014-07-31T16:16:15Z microbial_phenotype OMP:0007015 altered nutrient import phenotype OMP:0007015 A nutrient uptake phenotype that is altered relative to a designated control. OMP:DAS An altered nutrient import phenotype where import is decreased relative to a designated control. siegele 2014-07-31T16:16:52Z microbial_phenotype OMP:0007016 decreased nutrient import OMP:0007016 An altered nutrient import phenotype where import is decreased relative to a designated control. OMP:DAS A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished. siegele 2014-07-31T16:18:02Z microbial_phenotype OMP:0007017 abolished nutrient import OMP:0007017 A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished. OMP:DAS A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals. siegele 2013-09-16T17:29:19Z prototroph prototrophic microbial_phenotype OMP:0007018 does not require growth factor(s) OMP:0007018 A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals. OMP:DAS An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control. siegele 2013-09-16T17:30:07Z microbial_phenotype OMP:0007019 increased amino acid requirement OMP:0007019 An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control. OMP:DAS An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control. siegele 2014-08-01T00:12:56Z microbial_phenotype OMP:0007020 increased biofilm formation OMP:0007020 An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control. OMP:DAS An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control. siegele 2013-09-17T16:13:20Z microbial_phenotype OMP:0007021 decreased amino acid requirement OMP:0007021 An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control. OMP:DAS An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. siegele 2013-09-17T16:30:10Z microbial_phenotype OMP:0007022 decreased purine requirement OMP:0007022 An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. OMP:DAS An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. siegele 2013-09-17T16:30:36Z microbial_phenotype OMP:0007023 increased purine requirement OMP:0007023 An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. OMP:DAS A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control. siegele 2013-09-17T16:31:05Z microbial_phenotype OMP:0007024 increased vitamin/enzyme cofactor requirement OMP:0007024 A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control. OMP:DAS A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control. siegele 2013-09-17T16:33:34Z microbial_phenotype OMP:0007025 decreased vitamin/enzyme cofactor requirement OMP:0007025 A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control. OMP:DAS An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control. siegele 2014-08-01T00:12:56Z microbial_phenotype OMP:0007026 decreased biofilm formation OMP:0007026 An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control. OMP:DAS A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control. siegele 2013-09-17T16:45:02Z microbial_phenotype OMP:0007027 increased quorum sensing OMP:0007027 A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control. OMP:DAS An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control. siegele 2013-09-17T16:45:18Z microbial_phenotype OMP:0007028 decreased quorum sensing OMP:0007028 An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control. OMP:DAS A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control. DeborahSiegele 2013-09-28T20:59:52Z microbial_phenotype OMP:0007029 decreased utilization of dinitrogen OMP:0007029 A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control. OMP:DAS A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control. DeborahSiegele 2013-09-28T21:02:26Z microbial_phenotype OMP:0007030 increased utilization of dinitrogen OMP:0007030 A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control. OMP:DAS A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen. DeborahSiegele 2013-09-28T21:02:26Z microbial_phenotype OMP:0007031 presence of dinitrogen utilization OMP:0007031 A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen. OMP:DAS An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control. DeborahSiegele 2013-09-28T21:03:56Z microbial_phenotype OMP:0007032 decreased utilization of inorganic nitrogen source OMP:0007032 An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control. OMP:DAS An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control. DeborahSiegele 2013-09-28T21:05:18Z microbial_phenotype OMP:0007033 increased utilization of inorganic nitrogen source OMP:0007033 An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control. OMP:DAS An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source. DeborahSiegele 2013-09-28T21:05:43Z microbial_phenotype OMP:0007034 utilization of inorganic nitrogen phenotype OMP:0007034 An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source. OMP:DAS An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control. DeborahSiegele 2013-09-28T21:07:53Z microbial_phenotype OMP:0007035 decreased organic nitrogen source utilization OMP:0007035 An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control. OMP:DAS An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control. DeborahSiegele 2013-09-28T21:07:58Z microbial_phenotype OMP:0007036 increased organic nitrogen source utilization OMP:0007036 An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control. OMP:DAS An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen. DeborahSiegele 2013-09-28T21:08:02Z microbial_phenotype OMP:0007037 utilization of organic nitrogen phenotype true OMP:0007037 An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen. OMP:DAS A growth factor requirement phenotype where the required growth factor is one or more amino acids. DeborahSiegele 2013-09-29T00:27:05Z homocysteine requirement isoleucine requirement methionine requirement valine requirement microbial_phenotype OMP:0007038 amino acid requirement OMP:0007038 A growth factor requirement phenotype where the required growth factor is one or more amino acids. OMP:DAS homocysteine requirement CHEBI:17230 isoleucine requirement CHEBI:24898 methionine requirement CHEBI:16811 valine requirement CHEBI:27266 A requires growth factor(s) phenotype where the required growth factor is a purine base. DeborahSiegele 2013-09-29T00:33:05Z adenine requirement microbial_phenotype OMP:0007039 purine requirement OMP:0007039 A requires growth factor(s) phenotype where the required growth factor is a purine base. OMP:DAS adenine requirement CHEBI:16708 A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor. DeborahSiegele 2013-09-29T00:36:46Z microbial_phenotype OMP:0007040 vitamin/enzyme cofactor requirement OMP:0007040 A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor. OMP:DAS A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control. dsiegele 2014-08-07T18:37:42Z microbial_phenotype OMP:0007041 decreased positive chemotaxis OMP:0007041 A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS A nutrient utilization phenotype where the nutrient is used as a source of sulfur. DeborahSiegele 2013-09-29T09:39:03Z microbial_phenotype OMP:0007042 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. sulfur source utilization phenotype OMP:0007042 A nutrient utilization phenotype where the nutrient is used as a source of sulfur. OMP:DAS A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus. DeborahSiegele 2013-09-29T09:41:48Z microbial_phenotype OMP:0007043 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. phosphorus source utilization phenotype OMP:0007043 A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus. OMP:DAS A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction. siegele 2013-10-01T15:07:53Z microbial_phenotype OMP:0007044 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. growth factor requirement phenotype OMP:0007044 A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction. ISBN:9780878936083 OMP:DAS A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus. siegele 2013-10-01T15:17:10Z microbial_phenotype OMP:0007045 inorganic phosphorus source utilization OMP:0007045 A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus. OMP:DAS A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus. siegele 2013-10-01T15:17:10Z microbial_phenotype OMP:0007046 organic phosphorus source utilization OMP:0007046 A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus. OMP:DAS An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control. siegele 2013-10-01T15:19:36Z microbial_phenotype OMP:0007047 decreased utilization of inorganic phosphorus source OMP:0007047 An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control. OMP:DAS An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control. siegele 2013-10-01T15:19:36Z microbial_phenotype OMP:0007048 increased utilization of inorganic phosphorus source OMP:0007048 An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control. OMP:DAS An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus. siegele 2013-10-01T15:19:36Z microbial_phenotype OMP:0007049 This term was made obsolete because it is redundant with OMP:0007045. utilization of inorganic phosphorus phenotype true OMP:0007049 An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus. OMP:DAS An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control. siegele 2013-10-01T15:20:22Z microbial_phenotype OMP:0007050 decreased utilization of organic phosphorus source OMP:0007050 An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control. OMP:DAS An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control. siegele 2013-10-01T15:20:22Z microbial_phenotype OMP:0007051 increased utilization of organic phosphorus source OMP:0007051 An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control. OMP:DAS An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus. siegele 2013-10-01T15:20:22Z microbial_phenotype OMP:0007052 This term was made obsolete because it is redunant with OMP:0007046. utilization of organic phosphorus true OMP:0007052 An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus. OMP:DAS An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control. dsiegele 2014-08-08T18:08:51Z microbial_phenotype OMP:0007053 increased positive chemotaxis OMP:0007053 An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control. OMP:DAS An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control. dsiegele 2014-08-08T18:08:51Z microbial_phenotype OMP:0007054 increased negative chemotaxis OMP:0007054 An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control. OMP:DAS An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. siegele 2013-10-01T15:33:08Z microbial_phenotype OMP:0007055 decreased utilization of inorganic sulfur OMP:0007055 An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. siegele 2013-10-01T15:33:32Z microbial_phenotype OMP:0007056 increased utilization of inorganic sulfur OMP:0007056 An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur. siegele 2013-10-01T15:33:38Z microbial_phenotype OMP:0007057 presence of inorganic sulfur utilization OMP:0007057 A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur. OMP:DAS An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. siegele 2013-10-01T15:34:00Z microbial_phenotype OMP:0007058 decreased utilization of organic sulfur source OMP:0007058 An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. siegele 2013-10-01T15:34:05Z microbial_phenotype OMP:0007059 increased utilization of organic sulfur OMP:0007059 An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control. OMP:DAS A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur. siegele 2013-10-01T15:34:09Z microbial_phenotype OMP:0007060 presence of organic sulfur utilization OMP:0007060 A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur. OMP:DAS A nutrient utilization phenotype where the nutrient is being used as a source of iron. siegele 2013-10-01T15:46:38Z microbial_phenotype OMP:0007061 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. iron source utilization phenotype OMP:0007061 A nutrient utilization phenotype where the nutrient is being used as a source of iron. OMP:JCH A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control. DeborahSiegele 2014-01-31T18:31:01Z microbial_phenotype OMP:0007062 increased heterocyst formation OMP:0007062 A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control. OMP:DAS An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control. DeborahSiegele 2014-01-31T18:45:09Z microbial_phenotype OMP:0007063 increased myxospore formation OMP:0007063 An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control. OMP:DAS An energy metabolism phenotype where light is used as the energy source. DeborahSiegele 2014-01-31T18:49:00Z microbial_phenotype phototroph OMP:0007064 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. phototrophic phenotype OMP:0007064 An energy metabolism phenotype where light is used as the energy source. ISBN:978-0-07-340240-6 OMP:DAS An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound. siegele 2014-02-03T15:39:56Z antifolate resistance CHEBI:26373 methotrexate resistance phenotype microbial_phenotype pteridine sensitivity phenotype OMP:0007065 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. pteridine resistance phenotype OMP:0007065 An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound. CHEBI:26373 OMP:DAS antifolate resistance CHEBI:73913 methotrexate resistance phenotype CHEBI:44185 A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process. siegele 2014-02-03T15:55:25Z GO:0019954 microbial_phenotype OMP:0007066 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. asexual reproduction phenotype OMP:0007066 A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process. ISBN:0673521435 OMP:DAS GO:0019954 asexual reproduction An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape. siegele 2014-02-03T15:55:54Z GO:0043093 microbial_phenotype OMP:0007067 binary fission phenotype OMP:0007067 An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape. ISBN:0673521435 OMP:DAS GO:0043093 cytokinesis by binary fission An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells. siegele 2014-02-03T16:09:27Z baeocyte formation microbial_phenotype OMP:0007068 multiple fission phenotype OMP:0007068 An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells. ISBN:9781593392925 OMP:JCH A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium. siegele 2014-02-21T15:07:59Z auxotroph auxotrophic microbial_phenotype OMP:0007069 requires growth factor(s) OMP:0007069 A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium. OMP:DAS An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control. siegele 2014-02-21T15:18:08Z microbial_phenotype OMP:0007070 decreased organic carbon source utilization OMP:0007070 An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control. OMP:DAS An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control. siegele 2014-02-21T15:18:41Z microbial_phenotype OMP:0007071 increased organic carbon source utilization OMP:0007071 An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control. OMP:DAS A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2). siegele 2014-02-21T15:28:04Z microbial_phenotype OMP:0007072 anaerobic respiration phenotype OMP:0007072 A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2). ISBN:978-0-07-340240-6 OMP:DAS An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain. siegele 2014-02-21T15:31:32Z microbial_phenotype OMP:0007073 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. fermentation phenotype OMP:0007073 An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain. ISBN:978-0-07-340240-6 OMP:DAS A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control. siegele 2014-02-21T15:42:23Z microbial_phenotype OMP:0007074 increased growth factor requirement OMP:0007074 A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control. OMP:DAS A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control. siegele 2014-02-21T15:42:44Z microbial_phenotype OMP:0007075 decreased growth factor requirement OMP:0007075 A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control. OMP:DAS An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control. siegele 2014-04-24T17:41:34Z microbial_phenotype OMP:0007076 altered aerotaxis OMP:0007076 An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control. OMP:JCH A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control. siegele 2014-04-24T17:43:04Z microbial_phenotype OMP:0007077 altered chemotaxis OMP:0007077 A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control. OMP:JCH An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control. siegele 2014-04-30T15:40:12Z microbial_phenotype OMP:0007078 altered carbon source utilization OMP:0007078 An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control. OMP:JCH A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control. siegele 2014-04-30T15:52:18Z microbial_phenotype OMP:0007079 altered growth factor requirement OMP:0007079 A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control. OMP:JCH A gene expression phenotype where expression of a gene or genes is altered relative to a designated control. dsiegele 2014-08-11T16:32:07Z microbial_phenotype OMP:0007080 altered gene expression OMP:0007080 A gene expression phenotype where expression of a gene or genes is altered relative to a designated control. OMP:DAS An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control. siegele 2014-04-30T16:03:42Z microbial_phenotype OMP:0007081 altered purine requirement OMP:0007081 An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control. OMP:JCH An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control. siegele 2014-04-30T16:07:16Z microbial_phenotype OMP:0007082 altered vitamin/enzyme cofactor requirement OMP:0007082 An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control. OMP:JCH An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control. siegele 2014-07-06T14:41:49Z microbial_phenotype OMP:0007083 altered cell size OMP:0007083 An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control. OMP:DAS An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control. siegele 2014-07-06T14:43:59Z microbial_phenotype OMP:0007084 decreased cell length OMP:0007084 An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control. OMP:DAS A microbial phenotype that is altered in some way relative to a designated control. siegele 2014-07-10T12:28:36Z microbial_phenotype OMP:0007085 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered microbial phenotype OMP:0007085 A microbial phenotype that is altered in some way relative to a designated control. OMP:DAS A sulfur source utilization phenotype that is altered relative to a designated control. siegele 2014-07-10T12:40:51Z microbial_phenotype OMP:0007086 altered sulfur source utilization phenotype OMP:0007086 A sulfur source utilization phenotype that is altered relative to a designated control. OMP:DAS An iron source utilization phenotype that is altered relative to a designated control. siegele 2014-07-10T12:48:21Z microbial_phenotype OMP:0007087 altered iron source utilization OMP:0007087 An iron source utilization phenotype that is altered relative to a designated control. OMP:DAS A heme utilization phenotype altered relative to a designated control. siegele 2014-07-10T12:49:28Z microbial_phenotype OMP:0007088 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered heme utilization phenotype OMP:0007088 A heme utilization phenotype altered relative to a designated control. OMP:JCH A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished. siegele 2014-07-10T12:51:30Z microbial_phenotype OMP:0007089 abolished heme utilization OMP:0007089 A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished. OMP:JCH An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control. siegele 2014-07-10T21:50:33Z microbial_phenotype OMP:0007090 more rod-like cell shape OMP:0007090 An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control. OMP:DAS A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control. siegele 2014-07-10T20:08:43Z microbial_phenotype OMP:0007091 decreased motility by gliding OMP:0007091 A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control. OMP:JCH A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control. siegele 2014-07-10T20:08:43Z microbial_phenotype OMP:0007092 decreased motility by swarming OMP:0007092 A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control. OMP:JCH A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control. siegele 2014-07-10T20:08:43Z microbial_phenotype OMP:0007093 decreased motility by swimming OMP:0007093 A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control. OMP:JCH A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control. siegele 2014-07-10T20:08:43Z microbial_phenotype OMP:0007094 decreased motility by twitching OMP:0007094 A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control. OMP:JCH An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control. siegele 2014-07-10T20:10:11Z microbial_phenotype OMP:0007095 increased motility by gliding OMP:0007095 An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control. OMP:JCH An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control. siegele 2014-07-10T20:10:11Z microbial_phenotype OMP:0007096 increased motility by swarming OMP:0007096 An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control. OMP:JCH An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control. siegele 2014-07-10T20:10:11Z microbial_phenotype OMP:0007097 increased motility by swimming OMP:0007097 An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control. OMP:JCH An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control. siegele 2014-07-10T20:10:11Z microbial_phenotype OMP:0007098 increased motility by twitching OMP:0007098 An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control. OMP:JCH A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter. siegele 2014-07-10T20:13:46Z PATO:0001873 microbial_phenotype OMP:0007099 cylindrical cell shape OMP:0007099 A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter. OMP:DAS A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes. siegele 2014-07-10T20:13:46Z PATO:0001865 microbial_phenotype OMP:0007100 spheroid cell shape OMP:0007100 A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes. OMP:DAS A cell shape phenotype where the shape of a cell is altered relative to a designated control. siegele 2014-07-10T20:24:53Z APO::0000051 microbial_phenotype OMP:0007101 altered cell shape OMP:0007101 A cell shape phenotype where the shape of a cell is altered relative to a designated control. OMP:DAS APO::0000051 cell shape An altered cell shape phenotype where a cell's shape is rounder than that of a designated control. siegele 2014-07-10T21:51:13Z microbial_phenotype OMP:0007102 more rounded cell shape OMP:0007102 An altered cell shape phenotype where a cell's shape is rounder than that of a designated control. OMP:DAS A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control. siegele 2014-07-10T22:43:40Z abnormal cell morphology microbial_phenotype OMP:0007103 altered cell morphology OMP:0007103 A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control. OMP:DAS abnormal cell morphology FYPO:0000005 A nutrient utilization phenotype that is altered relative to a designated control. siegele 2014-07-10T22:45:48Z microbial_phenotype OMP:0007104 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered nutrient utilization OMP:0007104 A nutrient utilization phenotype that is altered relative to a designated control. OMP:DAS A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control. siegele 2014-07-10T23:00:30Z microbial_phenotype OMP:0007105 altered flagellum OMP:0007105 A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control. OMP:DAS A gene expression phenotype that affects DNA-dependent transcription. dsiegele 2014-08-11T16:37:39Z GO:0006351 microbial_phenotype OMP:0007106 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. transcription phenotype OMP:0007106 A gene expression phenotype that affects DNA-dependent transcription. GO:0006351 OMP:DAS GO:0006351 transcription, DNA-templated A gene expression phenotype that affects translation of one or more mRNAs. dsiegele 2014-08-11T16:37:39Z FYPO:0000291 GO:0006412 microbial_phenotype OMP:0007107 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. translation phenotype OMP:0007107 A gene expression phenotype that affects translation of one or more mRNAs. GO:0006412 OMP:DAS FYPO:0000291 translation phenotype GO:0006412 translation A transcription phenotype where transcription of a gene or genes is altered relative to a designated control. dsiegele 2014-08-11T16:37:59Z microbial_phenotype OMP:0007108 altered transcription OMP:0007108 A transcription phenotype where transcription of a gene or genes is altered relative to a designated control. OMP:DAS An energy metabolism phenotype where energy is obtained from the oxidation of chemicals. siegele 2014-07-17T13:45:13Z microbial_phenotype OMP:0007109 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chemotrophic phenotype OMP:0007109 An energy metabolism phenotype where energy is obtained from the oxidation of chemicals. ISBN:978-0-07-340240-6 OMP:DAS A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals. siegele 2014-07-17T13:46:04Z microbial_phenotype OMP:0007110 chemolithotrophic OMP:0007110 A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals. ISBN:978-0-07-340240-6 OMP:DAS A chemotrophic phenotype where energy is derived from the oxidation of organic molecules. siegele 2014-07-17T13:46:04Z organotroph microbial_phenotype OMP:0007111 chemoorganotrophic OMP:0007111 A chemotrophic phenotype where energy is derived from the oxidation of organic molecules. ISBN:978-0-07-340240-6 OMP:DAS An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor. siegele 2014-07-17T13:56:17Z GO:0045333 microbial_phenotype OMP:0007112 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. respiration phenotype OMP:0007112 An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor. ISBN:978-0-07-340240-6 OMP:DAS GO:0045333 cellular respiration A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+). siegele 2014-07-17T14:28:35Z microbial_phenotype OMP:0007113 ferrous iron (Fe2+) oxidation OMP:0007113 A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+). ISBN:978-0-07-340240-6 OMP:DAS A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S). siegele 2014-07-17T14:28:35Z microbial_phenotype OMP:0007114 sulfide (H2S) oxidation OMP:0007114 A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S). ISBN:978-0-07-340240-6 OMP:DAS A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control. siegele 2014-07-17T16:29:34Z altered generation time altered growth rate altered doubling time microbial_phenotype OMP:0007115 altered population growth rate OMP:0007115 A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control. OMP:DAS An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control. siegele 2014-07-18T13:53:13Z microbial_phenotype OMP:0007116 altered cell stalk OMP:0007116 An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control. OMP:DAS An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control. dsiegele 2014-08-11T16:41:06Z microbial_phenotype OMP:0007117 increased transcription of gene or operon OMP:0007117 An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control. OMP:DAS An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control. dsiegele 2014-08-11T16:41:06Z microbial_phenotype OMP:0007118 decreased transcription of gene or operon OMP:0007118 An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control. OMP:DAS A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control. dsiegele 2014-08-11T16:42:21Z microbial_phenotype OMP:0007119 abolished transcription of gene or operon OMP:0007119 A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control. OMP:DAS A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control. dsiegele 2014-08-11T16:57:46Z microbial_phenotype OMP:0007120 The UniProt accession for the particular sigma factor should be entered in the extension field. decreased transcription of sigma-factor dependent genes OMP:0007120 A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control. OMP:DAS An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control. dsiegele 2014-08-11T17:02:37Z microbial_phenotype OMP:0007121 The UniProt accession for the particular sigma factor should be entered in the extension field. increased transcription of sigma-factor dependent genes OMP:0007121 An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control. OMP:DAS A translation phenotype where translation of one or more mRNAs is altered relative to a designated control. dsiegele 2014-08-11T17:07:54Z microbial_phenotype OMP:0007122 altered translation OMP:0007122 A translation phenotype where translation of one or more mRNAs is altered relative to a designated control. OMP:DAS An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control. dsiegele 2014-08-11T17:10:06Z microbial_phenotype OMP:0007123 Increased translation OMP:0007123 An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control. OMP:DAS An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control. dsiegele 2014-08-11T17:10:06Z microbial_phenotype OMP:0007124 decreased translation OMP:0007124 An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control. OMP:DAS A decreased translation phenotype where translation of one or more mRNAs is abolished. dsiegele 2014-08-11T17:10:06Z microbial_phenotype OMP:0007125 abolished translation OMP:0007125 A decreased translation phenotype where translation of one or more mRNAs is abolished. OMP:DAS A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency. dsiegele 2014-08-11T17:58:30Z SNOMEDCT:16601003 microbial_phenotype OMP:0007126 viscous colony consistency OMP:0007126 A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency. ISBN:1555810489 OMP:WAM SNOMEDCT:16601003 Bacterial colony consistency, viscous A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control. dsiegele 2014-08-12T13:30:01Z microbial_phenotype OMP:0007127 altered taxis OMP:0007127 A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control. OMP:DAS A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control. dsiegele 2014-08-12T13:36:13Z microbial_phenotype OMP:0007128 altered cell arrangement OMP:0007128 A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control. OMP:DAS An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control. dsiegele 2014-08-14T18:22:16Z microbial_phenotype OMP:0007129 altered outer membrane vesicle production OMP:0007129 An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control. OMP:DAS A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms. siegele 2014-08-16T16:40:58Z microbial_phenotype OMP:0007130 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. differential test phenotype OMP:0007130 A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms. ISBN:9780895828309 OMP:DAS A differential media phenotype where the results of a differential test are altered relative to a designated control. siegele 2014-08-16T16:44:03Z microbial_phenotype OMP:0007131 altered differential test result OMP:0007131 A differential media phenotype where the results of a differential test are altered relative to a designated control. OMP:DAS An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control. siegele 2014-08-17T00:46:29Z microbial_phenotype OMP:0007132 decreased flagellum length OMP:0007132 An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control. OMP:DAS A capsule phenotype where the capsule layer is altered relative to a designated control. siegele 2014-08-17T12:52:35Z microbial_phenotype OMP:0007133 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered capsule phenotype OMP:0007133 A capsule phenotype where the capsule layer is altered relative to a designated control. OMP:DAS An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control. siegele 2014-08-17T13:12:31Z microbial_phenotype OMP:0007134 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered resistance to an antimicrobial agent OMP:0007134 An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control. OMP:DAS An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound. siegele 2014-08-17T13:19:30Z microbial_phenotype OMP:0007135 not resistant to alkaloid OMP:0007135 An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound. OMP:DAS An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds. siegele 2014-08-17T13:19:30Z microbial_phenotype OMP:0007136 resistant to alkaloid OMP:0007136 An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds. OMP:DAS An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control. siegele 2014-08-17T13:19:30Z microbial_phenotype OMP:0007137 altered alkaloid resistance OMP:0007137 An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control. OMP:DAS A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control. siegele 2014-08-17T17:35:20Z microbial_phenotype OMP:0007138 altered effects of pH on population growth OMP:0007138 A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control. OMP:DAS A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control. siegele 2014-08-17T18:03:16Z microbial_phenotype lantibiotic sensitivity phenotype OMP:0007139 altered lantibiotic resistance phenotype OMP:0007139 A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control. OMP:DAS A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell. siegele 2014-08-18T17:02:12Z GO:0020014 microbial_phenotype OMP:0007140 schizogeny phenotype OMP:0007140 A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell. ISBN:9781593392925 OMP:DAS GO:0020014 schizogeny A schizogeny phenotype where an organism reproduces by the process of schizogeny. siegele 2014-08-18T17:12:34Z microbial_phenotype OMP:0007141 presence of schizogeny OMP:0007141 A schizogeny phenotype where an organism reproduces by the process of schizogeny. OMP:DAS A sporulation phenotype related to the formation of spores derived from the products of mitosis. siegele 2014-08-18T17:15:43Z GO:0030436 microbial_phenotype mitotic spore formation OMP:0007142 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. asexual sporulation phenotype OMP:0007142 A sporulation phenotype related to the formation of spores derived from the products of mitosis. GO:0030436 OMP:DAS PMID:9781593392925 GO:0030436 asexual sporulation An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores. siegele 2014-08-18T17:19:11Z microbial_phenotype OMP:0007143 presence of asexual sporulation OMP:0007143 An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores. OMP:DAS An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control. siegele 2014-08-18T17:22:42Z microbial_phenotype OMP:0007144 altered asexual reproduction OMP:0007144 An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control. OMP:DAS An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control. siegele 2014-08-18T17:23:30Z microbial_phenotype OMP:0007145 altered asexual sporulation OMP:0007145 An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control. OMP:DAS A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control. siegele 2014-08-18T17:24:18Z microbial_phenotype OMP:0007146 altered schizogeny OMP:0007146 A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control. OMP:DAS A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control. siegele 2014-08-19T14:26:57Z microbial_phenotype OMP:0007147 altered DNA replication OMP:0007147 A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control. OMP:DAS A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells. siegele 2014-08-19T14:37:21Z GO:0000910 cell division phenotype microbial_phenotype OMP:0007148 cytokinesis phenotype OMP:0007148 A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells. OMP:DAS GO:0000910 cytokinesis A cytokinesis phenotype related to the process of forming a septum that separates daughter cells. siegele 2014-08-19T14:52:08Z abnormal septation microbial_phenotype OMP:0007149 septation phenotype OMP:0007149 A cytokinesis phenotype related to the process of forming a septum that separates daughter cells. OMP:DAS abnormal septation FYPO:0000117 A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished. siegele 2014-08-20T23:57:11Z microbial_phenotype OMP:0007150 abolished motility by gliding OMP:0007150 A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished. OMP:DAS A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control. siegele 2014-08-27T22:56:03Z microbial_phenotype OMP:0007151 altered colony pigmentation OMP:0007151 A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control. OMP:DAS A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics. siegele 2014-08-28T11:55:19Z microbial_phenotype OMP:0007152 persister cell phenotype OMP:0007152 A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics. OMP:DAS PMID:20528688 A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control. siegele 2014-08-28T11:57:56Z microbial_phenotype OMP:0007153 altered persister cell phenotype OMP:0007153 A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control. OMP:DAS An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control. siegele 2014-08-28T11:59:20Z microbial_phenotype OMP:0007154 increased frequency of persister cells OMP:0007154 An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control. OMP:DAS An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control. siegele 2014-08-28T12:00:42Z microbial_phenotype OMP:0007155 decreased frequency of persister cells OMP:0007155 An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control. OMP:DAS A population growth phenotype concerning the rate at which a microbial population multiplies over time. siegele 2014-08-28T12:14:20Z microbial_phenotype OMP:0007156 population growth rate phenotype OMP:0007156 A population growth phenotype concerning the rate at which a microbial population multiplies over time. OMP:DAS A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control. siegele 2014-08-28T12:15:47Z microbial_phenotype OMP:0007157 altered population growth OMP:0007157 A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control. OMP:DAS A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control. siegele 2014-08-28T16:51:03Z microbial_phenotype OMP:0007158 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered response to stress phenotype OMP:0007158 A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control. OMP:DAS A radiation stress phenotype that is altered relative to a designated control. siegele 2014-08-28T17:03:47Z microbial_phenotype OMP:0007159 altered response to radiation stress OMP:0007159 A radiation stress phenotype that is altered relative to a designated control. OMP:DAS A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control. siegele 2014-08-29T12:27:50Z microbial_phenotype OMP:0007160 altered colony morphology OMP:0007160 A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control. OMP:DAS A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality. siegele 2014-09-14T14:45:03Z FYPO:0000145 microbial_phenotype OMP:0007161 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. regulation phenotype OMP:0007161 A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality. OMP:DAS FYPO:0000145 regulation phenotype A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover. siegele 2014-09-14T14:47:50Z FYPO:0000288 microbial_phenotype OMP:0007162 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. gene expression regulation phenotype OMP:0007162 A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover. OMP:DAS FYPO:0000288 gene expression regulation phenotype A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription. siegele 2014-09-14T14:52:31Z FYPO:0000143 microbial_phenotype OMP:0007163 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. transcription regulation phenotype OMP:0007163 A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription. OMP:DAS FYPO:0000143 transcription regulation phenotype A gene expression regulation phenotype that affects the regulation of translation. siegele 2014-09-14T14:54:10Z FYPO:0000289 protein synthesis regulation microbial_phenotype OMP:0007164 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. translation regulation phenotype OMP:0007164 A gene expression regulation phenotype that affects the regulation of translation. OMP:DAS FYPO:0000289 translation regulation phenotype A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control. siegele 2014-09-14T15:35:53Z microbial_phenotype OMP:0007165 altered septation OMP:0007165 A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control. OMP:DAS A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control. siegele 2014-09-14T15:36:38Z microbial_phenotype OMP:0007166 altered cytokinesis OMP:0007166 A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control. OMP:DAS A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population. siegele 2014-09-25T17:14:07Z GO:0000003 microbial_phenotype OMP:0007167 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. population growth phenotype OMP:0007167 A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population. OMP:DAS GO:0000003 reproduction A decreased septation phenotype where formation of new cell septa is abolished. siegele 2014-09-25T17:18:11Z microbial_phenotype OMP:0007168 abolished septation OMP:0007168 A decreased septation phenotype where formation of new cell septa is abolished. OMP:DAS An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached. **This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action. OMP:0007881 siegele 2014-09-26T15:57:03Z microbial_phenotype OMP:0007169 antimicrobial peptide resistance phenotype true OMP:0007169 An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached. **This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action. OMP:DAS An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control. siegele 2014-09-26T16:02:16Z microbial_phenotype OMP:0007170 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered resistance to host defense peptides OMP:0007170 An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control. OMP:DAS A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides. siegele 2014-09-26T16:02:16Z microbial_phenotype OMP:0007171 resistant to host defense peptide OMP:0007171 A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides. OMP:DAS A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides. siegele 2014-09-26T16:02:16Z microbial_phenotype OMP:0007172 not resistant to host defense peptide OMP:0007172 A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides. OMP:DAS An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control. siegele 2014-09-26T16:02:54Z Increased sensitivity to host defense peptide microbial_phenotype OMP:0007173 decreased resistance to host defense peptides OMP:0007173 An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control. OMP:DAS An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control. siegele 2014-09-26T16:02:54Z microbial_phenotype OMP:0007174 increased resistance to host defense peptides OMP:0007174 An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control. OMP:DAS An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration. siegele 2014-09-29T14:00:51Z microbial_phenotype OMP:0007175 presence of aerobic respiration OMP:0007175 An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration. OMP:DAS An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration. siegele 2014-09-29T14:02:56Z microbial_phenotype OMP:0007176 absence of aerobic respiration OMP:0007176 An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration. OMP:DAS An aerobic respiration phenotype that is altered relative to a designated control. siegele 2014-09-29T14:04:45Z microbial_phenotype OMP:0007177 altered aerobic respiration OMP:0007177 An aerobic respiration phenotype that is altered relative to a designated control. OMP:DAS An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control. siegele 2014-09-29T14:05:44Z microbial_phenotype OMP:0007178 increased aerobic respiration OMP:0007178 An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control. OMP:DAS An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control. siegele 2014-09-29T14:06:33Z microbial_phenotype OMP:0007179 decreased aerobic respiration OMP:0007179 An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control. OMP:DAS A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished. siegele 2014-09-29T14:07:17Z microbial_phenotype OMP:0007180 abolished aerobic respiration OMP:0007180 A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished. OMP:DAS An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration. siegele 2014-09-29T14:08:46Z microbial_phenotype OMP:0007181 presence of anaerobic respiration OMP:0007181 An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration. OMP:DAS An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration. siegele 2014-09-29T14:08:46Z microbial_phenotype OMP:0007182 absence of anaerobic respiration OMP:0007182 An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration. OMP:DAS An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control. siegele 2014-09-29T14:08:46Z microbial_phenotype OMP:0007183 altered anaerobic respiration OMP:0007183 An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control. OMP:DAS An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control. siegele 2014-09-29T14:08:46Z microbial_phenotype OMP:0007184 increased anaerobic respiration OMP:0007184 An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control. OMP:DAS An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control. siegele 2014-09-29T14:08:46Z microbial_phenotype OMP:0007185 decreased anaerobic respiration OMP:0007185 An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control. OMP:DAS A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished. siegele 2014-09-29T14:08:46Z microbial_phenotype OMP:0007186 abolished anaerobic respiration OMP:0007186 A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished. OMP:DAS A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities. siegele 2014-10-03T17:22:57Z microbial_phenotype OMP:0007187 quality (Interim) true OMP:0007187 A quality which inheres in an process that is altered in same way relative to a designated control. siegele 2014-10-03T17:27:01Z microbial_phenotype OMP:0007188 altered_process_quality OMP:0007188 A quality which inheres in an process that is altered in same way relative to a designated control. OMP:DAS PATO:0001236 A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity. siegele 2014-10-03T17:45:57Z microbial_phenotype OMP:0007189 altered_relative_to OMP:0007189 A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity. OMP:DAS A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control. siegele 2014-10-04T01:42:58Z microbial_phenotype OMP:0007190 altered dinitrogen utilization OMP:0007190 A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control. OMP:DAS A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen. siegele 2014-10-04T01:44:57Z microbial_phenotype OMP:0007191 absence of dinitrogen utilization OMP:0007191 A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen. OMP:DAS A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population. siegele 2014-10-04T18:41:07Z microbial_phenotype OMP:0007192 effect of non-nutrient environmental factors on population growth phenotype OMP:0007192 A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population. ISBN:9780073402406 OMP:DAS A physical object quality that is altered relative to a designated control. siegele 2014-10-04T19:34:54Z microbial_phenotype OMP:0007193 altered_physical_object_quality OMP:0007193 A physical object quality that is altered relative to a designated control. OMP:DAS A microbial phenotype that affects a biological process. siegele 2014-10-18T21:38:46Z FYPO:0000300 GO:0008150 microbial_phenotype OMP:0007194 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. biological process phenotype OMP:0007194 A microbial phenotype that affects a biological process. FYPO:0000300 OMP:DAS FYPO:0000300 biological process phenotype GO:0008150 biological_process A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity. siegele 2014-10-18T21:39:28Z APO:0000087 chemical sensitivity phenotype microbial_phenotype OMP:0007195 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. chemical resistance phenotype OMP:0007195 A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity. OMP:DAS APO:0000087 resistance to chemicals An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control. siegele 2014-10-20T15:08:04Z microbial_phenotype OMP:0007196 altered akinete formation OMP:0007196 An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control. OMP:DAS A microbial phenotype that affects a quality of a cellular component. siegele 2014-10-21T23:28:25Z CMPO:0000259 GO:0005575 microbial_phenotype OMP:0007197 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cellular component phenotype OMP:0007197 A microbial phenotype that affects a quality of a cellular component. OMP:DAS CMPO:0000259 cellular component phenotype GO:0005575 cellular_component A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm). siegele 2015-02-04T21:53:26Z microbial_phenotype OMP:0007198 presence of resistance to UV-A radiation OMP:0007198 A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm). ISO:21348 OMP:DAS A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm). siegele 2015-02-04T22:00:52Z microbial_phenotype OMP:0007199 presence of resistance to UV-B radiation OMP:0007199 A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm). ISO:21348 OMP:DAS A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm). siegele 2015-02-04T22:02:13Z microbial_phenotype OMP:0007200 presence of resistance to UV-C radiation OMP:0007200 A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm). ISO:21348 OMP:DAS A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control. siegele 2015-02-04T22:03:32Z microbial_phenotype OMP:0007201 decreased resistance to UV-C radiation OMP:0007201 A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control. OMP:DAS A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished. siegele 2015-02-04T22:05:25Z microbial_phenotype OMP:0007202 abolished resistance to UV-C radiation OMP:0007202 A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished. OMP:DAS A gene expression regulation phenotype that is altered relative to a designated control. siegele 2015-02-05T11:12:46Z microbial_phenotype OMP:0007203 altered gene expression regulation OMP:0007203 A gene expression regulation phenotype that is altered relative to a designated control. OMP:DAS A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control. siegele 2015-02-05T11:30:34Z microbial_phenotype OMP:0007204 decreased resistance to UV-A radiation OMP:0007204 A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control. OMP:DAS A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control. siegele 2015-02-05T11:31:00Z microbial_phenotype OMP:0007205 decreased resistance to UV-B radiation OMP:0007205 A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control. OMP:DAS An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control. siegele 2015-02-05T11:35:37Z microbial_phenotype OMP:0007206 increased resistance to UV-A OMP:0007206 An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control. OMP:DAS An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control. siegele 2015-02-05T11:35:59Z microbial_phenotype OMP:0007207 increased resistance to UV-B OMP:0007207 An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control. OMP:DAS An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control. siegele 2015-02-05T11:36:16Z microbial_phenotype OMP:0007208 increased resistance to UV-C OMP:0007208 An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control. OMP:DAS A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein. dsiegele 2015-02-17T12:08:11Z microbial_phenotype OMP:0007209 presence of RecA-mediated homologous recombination OMP:0007209 A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein. OMP:DAS A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo). dsiegele 2015-02-17T12:13:27Z microbial_phenotype OMP:0007210 presence of lambda Red-mediated recombination OMP:0007210 A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo). OMP:DAS A trace element utilization phenotype that is altered relative to a designated control. siegele 2015-03-13T15:13:30Z altered micronutrient utilization microbial_phenotype OMP:0007211 altered trace element utilization OMP:0007211 A trace element utilization phenotype that is altered relative to a designated control. OMP:DAS A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control. siegele 2015-03-13T15:23:04Z microbial_phenotype OMP:0007212 altered phosphorus source utilization OMP:0007212 A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control. OMP:DAS An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control. siegele 2015-03-13T15:25:43Z microbial_phenotype OMP:0007213 altered inorganic phosphorus source utilization OMP:0007213 An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control. OMP:DAS An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control. siegele 2015-03-13T15:29:56Z microbial_phenotype OMP:0007214 altered organic phosphorus source utilization OMP:0007214 An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control. OMP:DAS An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds. siegele 2015-03-15T22:30:48Z CHEBI:26580 rifabutin resistance phenotype rifapentine resistance phenotype microbial_phenotype rifampicin resistance phenotype OMP:0007215 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. rifamycin resistance phenotype OMP:0007215 An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds. CHEBI:26580 OMP:DAS CHEBI:26580 rifamycin rifabutin resistance phenotype CHEBI:45367 rifapentine resistance phenotype CHEBI:45304 rifampicin resistance phenotype CHEBI:28077 A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control. siegele 2015-03-15T22:32:58Z microbial_phenotype OMP:0007216 altered rifamycin resistance OMP:0007216 A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control. OMP:DAS A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins. siegele 2015-03-15T22:32:58Z microbial_phenotype OMP:0007217 not resistant to rifamycin OMP:0007217 A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins. OMP:DAS A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins. siegele 2015-03-15T22:32:58Z microbial_phenotype OMP:0007218 resistant to rifamycin OMP:0007218 A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins. OMP:DAS An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control. siegele 2015-03-15T22:37:30Z microbial_phenotype OMP:0007219 decreased resistance to rifamycin OMP:0007219 An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control. OMP:DAS An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control. siegele 2015-03-15T22:39:31Z microbial_phenotype OMP:0007220 increased resistance to rifamycin OMP:0007220 An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control. OMP:DAS A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished. siegele 2015-03-15T22:40:32Z microbial_phenotype OMP:0007221 abolished resistance to rifamycin OMP:0007221 A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished. OMP:DAS A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases. siegele 2015-05-20T16:23:34Z microbial_phenotype OMP:0007222 growth rate control of transcription OMP:0007222 A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases. OMP:DAS PMID:11844765 A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control. dsiegele 2015-06-01T16:03:03Z microbial_phenotype OMP:0007223 decreased spore germination efficiency OMP:0007223 A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control. OMP:DAS An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium). dsiegele 2015-06-03T16:03:42Z microbial_phenotype OMP:0007224 endospore location phenotype OMP:0007224 An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium). OMP:KDA An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium). dsiegele 2015-06-03T16:06:06Z microbial_phenotype OMP:0007225 central location of endospore OMP:0007225 An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium). ISBN:9780073402406 OMP:DAS An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium). dsiegele 2015-06-04T15:40:39Z microbial_phenotype OMP:0007226 terminal location of endospore OMP:0007226 An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium). OMP:DAS A xx. dsiegele 2015-06-04T15:42:45Z microbial_phenotype OMP:0007227 swollen sporangium OMP:0007227 A xx. ISBN:9780073402406 OMP:DAS A spore morphology phenotype that is related to the form and structure of an endospore. dsiegele 2015-06-04T16:05:37Z microbial_phenotype OMP:0007228 endospore morphology phenotype OMP:0007228 A spore morphology phenotype that is related to the form and structure of an endospore. CL:0000563 GO:0034301 OMP:DAS An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore. dsiegele 2015-06-04T16:17:34Z GO:0043591 microbial_phenotype OMP:0007229 endospore external encapsulating structure phenotype OMP:0007229 An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore. GO:0043591 OMP:DAS GO:0043591 endospore external encapsulating structure An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid. dsiegele 2015-06-04T16:22:54Z GO:0043592 microbial_phenotype OMP:0007230 endospore exosporium phenotype OMP:0007230 An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid. GO:0043592 OMP:DAS GO:0043592 exosporium An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore. dsiegele 2015-06-04T16:29:52Z microbial_phenotype OMP:0007231 presence of an exosporium OMP:0007231 An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore. OMP:DAS An exosporium phenotype where the mature endospore lacks an exosporium. dsiegele 2015-06-04T16:29:52Z microbial_phenotype OMP:0007232 absence of an exosporium OMP:0007232 An exosporium phenotype where the mature endospore lacks an exosporium. OMP:DAS A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission. siegele 2015-06-20T18:21:53Z microbial_phenotype OMP:0007233 absence of binary fission OMP:0007233 A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission. OMP:JCH A budding phenotype where an organism lacks to the ability to multiply by the process of budding. siegele 2015-06-20T18:24:03Z microbial_phenotype OMP:0007234 absence of budding OMP:0007234 A budding phenotype where an organism lacks to the ability to multiply by the process of budding. OMP:JCH A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission. siegele 2015-06-20T18:25:24Z microbial_phenotype OMP:0007235 absence of multiple fission OMP:0007235 A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission. OMP:JCH An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores. siegele 2015-06-20T18:26:28Z microbial_phenotype OMP:0007236 absence of asexual sporulation OMP:0007236 An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores. OMP:JCH A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage. siegele 2015-06-29T17:35:29Z microbial_phenotype OMP:0007237 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bacteriophage sensitivity phenotype OMP:0007237 A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage. OMP:DAS A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage. siegele 2015-06-29T17:56:42Z microbial_phenotype OMP:0007238 sensitive to bacteriophage OMP:0007238 A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage. OMP:DAS A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage. siegele 2015-06-29T18:02:50Z bacteriophage resistance microbial_phenotype OMP:0007239 not sensitive to bacteriophage OMP:0007239 A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage. OMP:DAS An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage. siegele 2015-06-29T18:05:20Z microbial_phenotype OMP:0007240 decreased bacteriophage absorption OMP:0007240 An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage. OMP:DAS An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection. siegele 2015-06-29T18:09:11Z microbial_phenotype OMP:0007241 post-injection defect OMP:0007241 An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection. OMP:DAS A host-virus interaction phenotype that is altered relative to a designated control. siegele 2015-07-04T00:13:56Z microbial_phenotype OMP:0007242 altered host-virus interaction OMP:0007242 A host-virus interaction phenotype that is altered relative to a designated control. OMP:DAS A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control. siegele 2015-07-04T00:16:40Z microbial_phenotype OMP:0007243 altered bacteriophage sensitivity OMP:0007243 A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control. OMP:DAS An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control. siegele 2015-07-04T00:18:12Z microbial_phenotype OMP:0007244 decreased sensitivity to bacteriophage OMP:0007244 An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control. OMP:DAS A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished. siegele 2015-07-04T00:20:54Z microbial_phenotype OMP:0007245 abolished sensitivity to bacteriophage OMP:0007245 A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished. OMP:DAS A chemical resistance phenotype where a microbe is not resistant to a chemical. siegele 2015-07-16T00:36:34Z microbial_phenotype OMP:0007246 not resistant to a chemical OMP:0007246 A chemical resistance phenotype where a microbe is not resistant to a chemical. OMP:DAS A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical. siegele 2015-07-16T00:36:34Z microbial_phenotype OMP:0007247 resistant to a chemical OMP:0007247 A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical. OMP:DAS A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control. siegele 2015-07-16T00:36:34Z altered chemical sensitivity microbial_phenotype OMP:0007248 altered resistance to chemical OMP:0007248 A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control. OMP:DAS An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control. siegele 2015-07-16T00:42:17Z increased sensitivity to a chemical microbial_phenotype OMP:0007249 decreased resistance to a chemical OMP:0007249 An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control. OMP:DAS An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control. siegele 2015-07-16T00:42:17Z decreased sensitivity to a chemical microbial_phenotype OMP:0007250 increased resistance to a chemical OMP:0007250 An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control. OMP:DAS An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished. OMP:0007250 siegele 2015-07-16T00:42:17Z microbial_phenotype OMP:0007251 Chemical sensitivity phenotype and its child terms were renamed as chemical resistance phenotypes to be consistent with other branches of OMP. Other terms in this branch were redefined, but this term was made obsolete and replaced by OMP:0007250 ! increased resistance to a chemical. When using OMP:0007250 for annotations enter the database identifier for the specific chemical in the Annotation Extension field. abolished chemical sensitivity true OMP:0007251 An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished. OMP:DAS A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism. siegele 2015-07-31T13:22:28Z microbial_phenotype OMP:0007252 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. colonization of a host phenotype OMP:0007252 A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism. OMP:DAS A colonization of a host phenotype where a microbe is able to colonize a host organism. siegele 2015-07-31T13:25:08Z microbial_phenotype OMP:0007253 presence of colonization of a host OMP:0007253 A colonization of a host phenotype where a microbe is able to colonize a host organism. OMP:JG A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism. siegele 2015-07-31T13:25:08Z microbial_phenotype OMP:0007254 absence of colonization of a host OMP:0007254 A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism. OMP:JG A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. siegele 2015-07-31T13:25:08Z microbial_phenotype OMP:0007255 altered colonization of a host OMP:0007255 A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control. OMP:DAS An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. siegele 2015-07-31T13:26:07Z microbial_phenotype OMP:0007256 increased colonization of a host OMP:0007256 An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control. OMP:DAS An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. siegele 2015-07-31T13:26:07Z microbial_phenotype OMP:0007257 decreased colonization of a host OMP:0007257 An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control. OMP:DAS A decreased colonization of a host phenotype where colonization of a host organism is abolished. siegele 2015-07-31T13:26:07Z microbial_phenotype OMP:0007258 abolished colonization of a host OMP:0007258 A decreased colonization of a host phenotype where colonization of a host organism is abolished. OMP:DAS A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions. siegele 2015-07-31T13:47:33Z cell viability microbial_phenotype OMP:0007259 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. microbial cell viability phenotype OMP:0007259 A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions. FYPO:0000004 OMP:DAS cell viability FYPO:0000004 A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control. siegele 2015-07-31T14:00:54Z microbial_phenotype OMP:0007260 altered microbial cell viability OMP:0007260 A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control. OMP:DAS An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control. siegele 2015-07-31T14:00:54Z microbial_phenotype OMP:0007261 decreased cell viability OMP:0007261 An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control. OMP:DAS An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control. siegele 2015-07-31T14:00:54Z microbial_phenotype OMP:0007262 increased cell viability OMP:0007262 An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control. OMP:DAS siegele 2015-07-31T14:00:54Z microbial_phenotype OMP:0007263 viable but nonculturable cell OMP:0007263 A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium. siegele 2015-08-03T14:04:45Z microbial_phenotype OMP:0007264 drug-dependent population growth phenotype OMP:0007264 A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium. OMP:DAS A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium. siegele 2015-08-03T14:07:51Z microbial_phenotype OMP:0007265 presence of drug-dependent population growth OMP:0007265 A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium. OMP:DAS A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium. siegele 2015-08-03T14:07:51Z microbial_phenotype OMP:0007266 absence of drug-dependent population growth OMP:0007266 A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium. OMP:DAS A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control. siegele 2015-08-03T14:07:51Z microbial_phenotype OMP:0007267 altered drug-dependence of population growth OMP:0007267 A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control. OMP:REF An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control. siegele 2015-08-03T14:07:51Z microbial_phenotype OMP:0007268 increased drug-dependence of population growth OMP:0007268 An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control. OMP:DAS An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control. siegele 2015-08-03T14:07:51Z microbial_phenotype OMP:0007269 decreased drug-dependence of population growth OMP:0007269 An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control. OMP:DAS A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished. siegele 2015-08-03T14:07:51Z microbial_phenotype OMP:0007270 abolished drug-dependence of population growth OMP:0007270 A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished. OMP:DAS An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control. siegele 2015-08-11T16:54:13Z microbial_phenotype OMP:0007271 increased sensitivity to bacteriophage OMP:0007271 An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control. OMP:DAS An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells. siegele 2015-09-24T20:41:51Z microbial_phenotype OMP:0007272 decreased absorption of bacteriocin OMP:0007272 An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells. OMP:DAS An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects. siegele 2015-09-24T20:45:00Z colicin tolerant microbial_phenotype OMP:0007273 bacteriocin tolerant OMP:0007273 An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects. OMP:DAS PMID:4860908 A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode. siegele 2015-09-28T15:12:37Z mixotrophy microbial_phenotype OMP:0007274 mixotrophic carbon source utilization OMP:0007274 A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode. OMP:DAS An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control. siegele 2015-10-17T19:56:02Z microbial_phenotype OMP:0007275 altered frequency of reversing direction of flagellar rotation OMP:0007275 An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control. OMP:DAS A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control. siegele 2015-11-07T13:32:21Z microbial_phenotype OMP:0007276 increased threshold for positive chemotaxis OMP:0007276 A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control. OMP:DAS This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. OMP:0005233 siegele 2015-11-11T15:41:37Z microbial_phenotype OMP:0007277 cell wall morphology phenotype true OMP:0007277 This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis. GO:0005618 OMP:DAS A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide. siegele 2015-11-12T00:46:14Z microbial_phenotype OMP:0007278 Disproportionation of thiosulfate is the reaction: thiosulfate + H2O --> SO42- + HS- + H+. disproportionation of thiosulfate OMP:0007278 A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide. OMP:DAS PMID:10919837 A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control. siegele 2016-01-07T22:48:43Z microbial_phenotype OMP:0007279 altered protein activity phenotype OMP:0007279 A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control. OMP:DAS An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism. siegele 2016-01-09T18:04:12Z microbial_phenotype OMP:0007280 presence of enzymatic activity OMP:0007280 An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism. OMP:DAS An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism. siegele 2016-01-09T18:05:38Z microbial_phenotype OMP:0007281 absence of enzymatic activity OMP:0007281 An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism. OMP:DAS A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation. siegele 2016-01-09T18:37:25Z microbial_phenotype OMP:0007282 presence of UV-radiation resistance OMP:0007282 A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation. OMP:DAS A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation. siegele 2016-01-09T18:39:51Z microbial_phenotype OMP:0007283 absence of UV radiation resistance OMP:0007283 A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation. OMP:DAS A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host). siegele 2016-01-09T18:47:01Z microbial_phenotype OMP:0007284 presence of virulence OMP:0007284 A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host). OMP:DAS A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor. siegele 2016-01-10T00:30:53Z microbial_phenotype benzenediol:oxygen oxidoreductase activity OMP:0007285 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Laccase is involved in the synthesis of fungal melanin. laccase activity phenotype OMP:0007285 A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor. OMP:DAS benzenediol:oxygen oxidoreductase activity EC:1.10.3.2 A laccase phenotype where an organism exhibits laccase activity. siegele 2016-01-10T00:36:59Z microbial_phenotype OMP:0007286 presence of laccase activity OMP:0007286 A laccase phenotype where an organism exhibits laccase activity. OMP:DAS A laccase phenotype where an organism doesn't exhibit laccase activity. siegele 2016-01-10T00:37:17Z microbial_phenotype OMP:0007287 absence of laccase activity OMP:0007287 A laccase phenotype where an organism doesn't exhibit laccase activity. OMP:DAS A laccase activity phenotype where laccase activity is altered relative to a designated control. siegele 2016-01-10T00:37:57Z microbial_phenotype OMP:0007288 altered laccase activity OMP:0007288 A laccase activity phenotype where laccase activity is altered relative to a designated control. OMP:DAS An altered laccase activity phenotype where laccase activity is increased relative to a designated control. siegele 2016-01-10T00:45:01Z microbial_phenotype OMP:0007289 increased laccase activity OMP:0007289 An altered laccase activity phenotype where laccase activity is increased relative to a designated control. OMP:DAS An altered laccase activity phenotype where laccase activity is decreased relative to a designated control. siegele 2016-01-10T00:45:01Z microbial_phenotype OMP:0007290 decreased laccase activity OMP:0007290 An altered laccase activity phenotype where laccase activity is decreased relative to a designated control. OMP:DAS A decreased laccase activity phenotype where laccase activity is abolished. siegele 2016-01-10T00:45:01Z microbial_phenotype OMP:0007291 abolished laccase activity OMP:0007291 A decreased laccase activity phenotype where laccase activity is abolished. OMP:DAS A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control. siegele 2016-01-10T00:55:26Z microbial_phenotype OMP:0007292 altered spore germination efficiency OMP:0007292 A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control. OMP:DAS A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control. siegele 2016-01-10T00:57:49Z microbial_phenotype OMP:0007293 increased spore germination efficiency OMP:0007293 A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control. OMP:DAS A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts. siegele 2016-01-29T22:48:37Z APO:0000061 fast blue B staining phenotype microbial_phenotype OMP:0007294 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. diazonium blue B staining phenotype OMP:0007294 A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts. OMP:DAS PMID:60081 doi:10.1099/00207713-31-2-204 APO:0000061 colony color fast blue B staining phenotype CHEBI:87629 A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B. siegele 2016-01-29T23:13:37Z microbial_phenotype OMP:0007295 presence of diazonium blue B staining OMP:0007295 A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B. OMP:DAS A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B. siegele 2016-01-29T23:13:37Z microbial_phenotype OMP:0007296 absence of diazonium blue B staining OMP:0007296 A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B. OMP:DAS A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control. siegele 2016-01-29T23:13:37Z microbial_phenotype OMP:0007297 altered diazonium blue B staining OMP:0007297 A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control. OMP:DAS An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. siegele 2016-01-29T23:18:08Z microbial_phenotype OMP:0007298 presence of acid-fast stain OMP:0007298 An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. OMP:DAS An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. siegele 2016-01-29T23:19:38Z non-acid-fast staining microbial_phenotype OMP:0007299 absence of acid-fast stain OMP:0007299 An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol. OMP:DAS An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control. siegele 2016-01-29T23:29:27Z microbial_phenotype OMP:0007300 altered acid-fast stain OMP:0007300 An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control. OMP:DAS An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control. siegele 2016-01-30T00:33:19Z microbial_phenotype OMP:0007301 decreased diazonium blue B staining OMP:0007301 An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control. OMP:DAS An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control. siegele 2016-01-30T00:33:19Z microbial_phenotype OMP:0007302 increased diazonium blue B staining OMP:0007302 An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control. OMP:DAS A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished. siegele 2016-01-30T13:32:56Z microbial_phenotype OMP:0007303 abolished diazonium blue B staining OMP:0007303 A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished. OMP:DAS A cell staining phenotype that is altered relative to a designated control. siegele 2016-01-31T00:30:08Z microbial_phenotype OMP:0007304 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered cell staining phenotype OMP:0007304 A cell staining phenotype that is altered relative to a designated control. OMP:DAS An inorganic nitrogen source utilization phenotype that is altered relative to a designated control. siegele 2016-01-31T00:41:26Z microbial_phenotype OMP:0007305 altered utilization of inorganic nitrogen source OMP:0007305 An inorganic nitrogen source utilization phenotype that is altered relative to a designated control. OMP:DAS An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen. siegele 2016-01-31T00:43:21Z microbial_phenotype OMP:0007306 presence of inorganic nitrogen source utilization OMP:0007306 An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen. OMP:DAS An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen. siegele 2016-01-31T00:44:37Z microbial_phenotype OMP:0007307 absence of inorganic nitrogen utilization OMP:0007307 An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen. OMP:DAS A biological process phenotype that relates to the cessation of life of an individual cell. dsiegele 2016-02-02T14:15:49Z APO:0000312 microbial_phenotype OMP:0007308 cell death phenotype OMP:0007308 A biological process phenotype that relates to the cessation of life of an individual cell. APO:0000312 OMP:DAS APO:0000312 cell death An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process. dsiegele 2016-02-02T14:27:37Z GO:0006915 microbial_phenotype OMP:0007309 apoptosis phenotype OMP:0007309 An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process. APO:0000155 OMP:DAS GO:0006915 apoptotic process An apoptosis phenotype where a cell or cells cannot undergo apoptosis. dsiegele 2016-02-02T14:31:24Z microbial_phenotype OMP:0007310 absence of apoptosis OMP:0007310 An apoptosis phenotype where a cell or cells cannot undergo apoptosis. OMP:DAS An apoptosis phenotype where a cell or cells can undergo apoptosis. dsiegele 2016-02-02T14:31:24Z microbial_phenotype OMP:0007311 presence of apoptosis OMP:0007311 An apoptosis phenotype where a cell or cells can undergo apoptosis. OMP:DAS An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control. dsiegele 2016-02-02T14:31:24Z microbial_phenotype OMP:0007312 altered apoptosis OMP:0007312 An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control. OMP:DAS An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control. dsiegele 2016-02-02T14:58:50Z microbial_phenotype OMP:0007313 decreased apoptosis OMP:0007313 An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control. OMP:DAS An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control. dsiegele 2016-02-02T14:58:50Z microbial_phenotype OMP:0007314 increased apoptosis OMP:0007314 An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control. OMP:DAS A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm. siegele 2016-02-05T20:20:28Z microbial_phenotype OMP:0007315 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. population morphology phenotype OMP:0007315 A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm. OMP:DAS A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished. siegele 2016-02-23T02:09:35Z microbial_phenotype OMP:0007316 abolished superoxide dismutase activity OMP:0007316 A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished. OMP:DAS A decreased protein kinase A activity phenotype where the activity is abolished. siegele 2016-02-23T02:13:30Z microbial_phenotype OMP:0007317 abolished protein kinase A activity OMP:0007317 A decreased protein kinase A activity phenotype where the activity is abolished. OMP:DAS A decreased ferric reductase activity phenotype where ferric reductase activity is abolished. siegele 2016-02-23T02:16:03Z microbial_phenotype OMP:0007318 abolished ferric reductase activity OMP:0007318 A decreased ferric reductase activity phenotype where ferric reductase activity is abolished. OMP:DAS A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony. siegele 2016-02-25T18:35:28Z microbial_phenotype OMP:0007319 mucoid colony surface phenotype OMP:0007319 A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony. OMP:DAS A mucoid colony phenotype where the organism forms nonmucoid colonies. siegele 2016-02-25T18:43:57Z microbial_phenotype OMP:0007320 absence of mucoid colonies OMP:0007320 A mucoid colony phenotype where the organism forms nonmucoid colonies. OMP:DAS A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control. siegele 2016-02-25T18:44:52Z microbial_phenotype OMP:0007321 altered mucoid colony phenotype OMP:0007321 A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control. OMP:DAS siegele 2016-02-25T18:46:37Z microbial_phenotype OMP:0007322 increased mucoidy OMP:0007322 An altered mucoid colony pheotype where colonies are less mucoid than a designated control. siegele 2016-02-25T18:46:37Z microbial_phenotype OMP:0007323 decreased mucoidy OMP:0007323 An altered mucoid colony pheotype where colonies are less mucoid than a designated control. OMP:DAS A decreased mucoidy phenotype where mucoid colonies are abolished. siegele 2016-02-25T18:46:37Z microbial_phenotype OMP:0007324 abolished mucoidy OMP:0007324 A decreased mucoidy phenotype where mucoid colonies are abolished. OMP:DAS A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur. siegele 2016-02-25T22:42:30Z microbial_phenotype OMP:0007325 absence of inorganic sulfur utilization OMP:0007325 A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur. OMP:DAS A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur. siegele 2016-02-25T22:42:30Z microbial_phenotype OMP:0007326 absence of organic sulfur utilization OMP:0007326 A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur. OMP:DAS A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding. siegele 2016-05-21T22:43:21Z APO:0000212 GO:0005933 microbial_phenotype OMP:0007327 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bud morphology phenotype OMP:0007327 A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding. GO:0005933 OMP:DAS APO:0000212 bud morphology GO:0005933 cellular bud A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control. siegele 2016-05-21T22:52:05Z microbial_phenotype OMP:0007328 altered bud morphology OMP:0007328 A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control. OMP:DAS A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell. siegele 2016-05-21T22:59:29Z APO:0000056 microbial_phenotype OMP:0007329 bud neck morphology OMP:0007329 A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell. GO:0005935 OMP:DAS APO:0000056 bud neck morphology A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control. siegele 2016-05-21T23:02:47Z microbial_phenotype OMP:0007330 altered bud neck morphology OMP:0007330 A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control. OMP:DAS A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished. siegele 2016-05-26T23:29:02Z microbial_phenotype OMP:0007331 abolished apoptosis OMP:0007331 A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished. OMP:DAS A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell. siegele 2016-05-27T23:03:44Z FYPO:0000114 microbial_phenotype OMP:0007332 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cellular process phenotype OMP:0007332 A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell. GO:0009987 OMP:DAS FYPO:0000114 cellular process phenotype A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm. siegele 2016-05-27T23:08:08Z autolysosome formation autophagosome formation microbial_phenotype OMP:0007333 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. autophagy phenotype OMP:0007333 A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm. GO:0006914 OMP:DAS An autophagy phenotype related to the formation of autophagic vesicles. siegele 2016-05-27T23:09:01Z microbial_phenotype OMP:0007334 autophagic vesicle formation phenotype OMP:0007334 An autophagy phenotype related to the formation of autophagic vesicles. OMP:DAS An autophagic vesicle formation phenotype that is altered relative to a designated control. siegele 2016-05-27T23:09:26Z microbial_phenotype OMP:0007335 altered autophagic vesicle formation OMP:0007335 An autophagic vesicle formation phenotype that is altered relative to a designated control. OMP:DAS An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control. siegele 2016-05-27T23:10:53Z microbial_phenotype OMP:0007336 increased autophagic vesicle formation OMP:0007336 An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control. OMP:DAS An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control. siegele 2016-05-27T23:10:53Z microbial_phenotype OMP:0007337 decreased autophagic vesicle formation OMP:0007337 An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control. OMP:DAS A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished. siegele 2016-05-27T23:10:53Z microbial_phenotype OMP:0007338 abolished autophagic vesicle formation OMP:0007338 A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished. OMP:DAS A cell morphology phenotype related to the size, shape, or appearance of the nucleus. siegele 2016-05-28T02:18:45Z APO:0000057 microbial_phenotype OMP:0007339 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nuclear morphology phenotype OMP:0007339 A cell morphology phenotype related to the size, shape, or appearance of the nucleus. OMP:DAS APO:0000057 nuclear morphology A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control. siegele 2016-05-28T02:21:05Z microbial_phenotype OMP:0007340 altered nuclear morphology OMP:0007340 A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control. OMP:DAS A cell death phenotype where death of a cell or cells is altered relative to a designated control. siegele 2016-05-28T02:24:07Z microbial_phenotype OMP:0007341 altered cell death OMP:0007341 A cell death phenotype where death of a cell or cells is altered relative to a designated control. OMP:DAS A cellular process phenotype where a cellular process is altered relative to a designated control. siegele 2016-05-28T02:25:03Z microbial_phenotype OMP:0007342 altered cellular process OMP:0007342 A cellular process phenotype where a cellular process is altered relative to a designated control. OMP:DAS An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control. siegele 2016-05-28T02:28:04Z microbial_phenotype OMP:0007343 altered autophagy OMP:0007343 An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control. OMP:DAS A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells. siegele 2016-05-28T02:34:23Z microbial_phenotype OMP:0007344 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nuclear position phenotype OMP:0007344 A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells. APO:0000118 OMP:DAS A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control. siegele 2016-05-28T02:36:59Z microbial_phenotype OMP:0007345 altered nuclear position OMP:0007345 A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control. OMP:DAS A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell. siegele 2016-06-08T17:02:00Z exocytosis protein secretion microbial_phenotype OMP:0007346 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. protein secretion phenotype OMP:0007346 A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell. GO:0009306 OMP:DAS protein secretion APO:0000078 A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control. siegele 2016-06-09T22:42:13Z microbial_phenotype OMP:0007347 altered protein secretion OMP:0007347 A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control. OMP:DAS An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control. siegele 2016-06-09T22:43:50Z FYPO:0000539 microbial_phenotype OMP:0007348 increased protein secretion OMP:0007348 An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control. OMP:DAS FYPO:0000539 increased protein secretion An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control. siegele 2016-06-09T22:47:42Z FYPO:0000538 microbial_phenotype OMP:0007349 decreased protein secretion OMP:0007349 An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control. OMP:DAS FYPO:0000538 decreased protein secretion A decreased protein secretion phenotype where the process of protein secretion is abolished. siegele 2016-06-09T22:48:16Z FYPO:0000537 microbial_phenotype OMP:0007350 abolished protein secretion OMP:0007350 A decreased protein secretion phenotype where the process of protein secretion is abolished. OMP:DAS FYPO:0000537 abolished protein secretion A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control. siegele 2016-06-09T22:50:27Z microbial_phenotype OMP:0007351 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. altered biological process OMP:0007351 A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control. OMP:DAS A cell development phenotype where development of a cell or cells is altered relative to a designated control. siegele 2016-06-09T22:58:20Z microbial_phenotype OMP:0007352 altered cell development OMP:0007352 A cell development phenotype where development of a cell or cells is altered relative to a designated control. OMP:DAS A spore germination phenotype where germination of a spore or spores is altered relative to a designated control. siegele 2016-06-09T23:07:17Z microbial_phenotype OMP:0007353 altered spore germination OMP:0007353 A spore germination phenotype where germination of a spore or spores is altered relative to a designated control. OMP:DAS An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control. dsiegele 2016-06-16T15:56:40Z microbial_phenotype OMP:0007354 altered amino acid requirement OMP:0007354 An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control. OMP:DAS A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished. dsiegele 2016-06-16T16:20:47Z microbial_phenotype OMP:0007355 abolished amino acid requirement OMP:0007355 A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished. OMP:DAS An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds. siegele 2016-06-17T01:16:57Z CHEBI:36141 mitomycin resistance phenotype microbial_phenotype OMP:0007356 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. quinone resistance phenotype OMP:0007356 An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds. CHEBI:36141 OMP:DAS CHEBI:36141 quinone mitomycin resistance phenotype CHEBI:25357 A cellular component phenotype where a quality of a cellular component is altered relative to a designated control. dsiegele 2016-06-20T16:01:53Z microbial_phenotype OMP:0007357 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered cellular component phenotype OMP:0007357 A cellular component phenotype where a quality of a cellular component is altered relative to a designated control. OMP:DAS An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents. dsiegele 2016-06-20T16:23:54Z azidothymidine resistance phenotype puromycin resistance phenotype tunicamycin resistance phenotype zidovudine resistance phenotype microbial_phenotype OMP:0007358 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nucleoside resistance phenotype OMP:0007358 An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents. CHEBI:33838 OMP:DAS azidothymidine resistance phenotype CHEBI:10110 puromycin resistance phenotype CHEBI:17939 tunicamycin resistance phenotype CHEBI:29699 zidovudine resistance phenotype CHEBI:10110 A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside. dsiegele 2016-06-20T16:27:19Z microbial_phenotype OMP:0007359 resistant to a nucleoside OMP:0007359 A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside. OMP:DAS A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside. dsiegele 2016-06-20T16:27:19Z microbial_phenotype OMP:0007360 not resistant to a nucleoside OMP:0007360 A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside. OMP:DAS A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control. dsiegele 2016-06-20T16:27:19Z microbial_phenotype OMP:0007361 altered resistance to a nucleoside OMP:0007361 A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control. OMP:DAS An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control. dsiegele 2016-06-20T16:40:21Z microbial_phenotype OMP:0007362 Increased resistance to a nucleoside OMP:0007362 An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control. OMP:DAS An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control. dsiegele 2016-06-20T16:40:21Z microbial_phenotype OMP:0007363 decreased resistance to a nucleoside OMP:0007363 An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control. OMP:DAS An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished. dsiegele 2016-06-20T16:40:21Z microbial_phenotype OMP:0007364 abolished resistance to a nucleoside OMP:0007364 An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished. OMP:DAS An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom. siegele 2016-06-21T01:11:35Z acridine orange acriflavine resistance phenotype acriflavinium chloride microbial_phenotype OMP:0007365 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. acridine antimicrobial agent resistance phenotype OMP:0007365 An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom. CHEBI:36420 OMP:DAS acridine orange CHEBI:51739 acriflavinium chloride CHEBI:74728 An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine. siegele 2016-06-21T01:17:16Z microbial_phenotype OMP:0007366 resistant to an acridine OMP:0007366 An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine. OMP:DAS An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine. siegele 2016-06-21T01:17:16Z microbial_phenotype OMP:0007367 not resistant to an acridine OMP:0007367 An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine. OMP:DAS An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control. siegele 2016-06-21T01:17:16Z microbial_phenotype OMP:0007368 altered resistance to an acridine OMP:0007368 An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control. OMP:DAS An altered resistance to an acridine phenotype where resistance is increased relative to a designated control. siegele 2016-06-21T01:17:16Z microbial_phenotype OMP:0007369 increased resistance to an acridine OMP:0007369 An altered resistance to an acridine phenotype where resistance is increased relative to a designated control. OMP:DAS An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control. siegele 2016-06-21T01:17:16Z microbial_phenotype OMP:0007370 decreased resistance to an acridine OMP:0007370 An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control. OMP:DAS A decreased resistance to an acridine phenotype where resistance abolished. siegele 2016-06-21T01:17:16Z microbial_phenotype OMP:0007371 abolished resistance to an acridine OMP:0007371 A decreased resistance to an acridine phenotype where resistance abolished. OMP:DAS A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. dsiegele 2016-06-22T16:41:33Z alkylating agent sensitivity phenotype Hydroxyurea MMS methyl methanesulfonate microbial_phenotype OMP:0007372 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. alkylating agent resistance phenotype OMP:0007372 A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. CHEBI:22333 OMP:DAS Hydroxyurea CHEBI:44423 MMS CHEBI:25255 methyl methanesulfonate CHEBI:25255 An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent. dsiegele 2016-06-23T15:27:23Z microbial_phenotype OMP:0007373 resistant to alkylating agent OMP:0007373 An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent. OMP:das An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent. dsiegele 2016-06-23T15:27:23Z microbial_phenotype OMP:0007374 not resistant to alkylating agent OMP:0007374 An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent. OMP:DAS An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control. dsiegele 2016-06-23T15:27:23Z microbial_phenotype OMP:0007375 altered resistance to an alkylating agent OMP:0007375 An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control. OMP:DAS An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control. dsiegele 2016-06-23T15:27:23Z decreased sensitivity to an alkylating agent microbial_phenotype OMP:0007376 increased resistance to alkylating agent OMP:0007376 An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control. OMP:DAS An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control. dsiegele 2016-06-23T15:27:23Z increased sensitivity to an alkylating agent microbial_phenotype OMP:0007377 decreased resistance to alkylating agent OMP:0007377 An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control. OMP:DAS An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished. dsiegele 2016-06-23T15:27:23Z microbial_phenotype OMP:0007378 abolished resistance to alkylating agent OMP:0007378 An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished. OMP:DAS A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base. dsiegele 2016-06-23T15:57:42Z uracil requirement microbial_phenotype OMP:0007379 pyrimidine requirement OMP:0007379 A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base. OMP:DAS uracil requirement CHEBI:17568 An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent. siegele 2016-06-26T14:45:16Z benzamides sensitivity phenotype benzamide resistance phenotype microbial_phenotype OMP:0007380 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. benzamides resistance phenotype OMP:0007380 An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent. CHEBI:22702 OMP:DAS benzamides sensitivity phenotype CHEBI:22702 benzamide resistance phenotype CHEBI:28179 A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide. siegele 2016-06-26T14:45:16Z microbial_phenotype OMP:0007381 resistant to benzamides OMP:0007381 A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide. OMP:DAS A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide. siegele 2016-06-26T14:45:16Z microbial_phenotype OMP:0007382 not resistant to benzamides OMP:0007382 A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide. OMP:DAS A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control. siegele 2016-06-26T14:45:16Z microbial_phenotype OMP:0007383 altered resistance to benzamides OMP:0007383 A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control. OMP:DAS An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control. siegele 2016-06-26T14:45:16Z microbial_phenotype OMP:0007384 increased resistance to a benzamide OMP:0007384 An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control. OMP:DAS An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control. siegele 2016-06-26T14:45:16Z microbial_phenotype OMP:0007385 decreased resistance benzamides OMP:0007385 An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control. OMP:DAS A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished. siegele 2016-06-26T14:45:16Z microbial_phenotype OMP:0007386 abolished resistance to benzamides OMP:0007386 A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished. OMP:DAS An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control. dsiegele 2016-06-29T15:45:39Z microbial_phenotype OMP:0007387 altered pyrimidine requirement OMP:0007387 An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control. OMP:DAS An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. dsiegele 2016-06-29T15:47:23Z microbial_phenotype OMP:0007388 increased pyrimidine requirement OMP:0007388 An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control. OMP:DAS An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. dsiegele 2016-06-29T15:47:23Z microbial_phenotype OMP:0007389 decreased pyrimidine requirement OMP:0007389 An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control. OMP:DAS A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished. dsiegele 2016-06-29T15:47:23Z microbial_phenotype OMP:0007390 abolished pyrimidine requirement OMP:0007390 A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished. OMP:DAS A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions. siegele 2016-06-29T19:15:29Z microbial_phenotype inviable OMP:0007391 abolished cell viability OMP:0007391 A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions. OMP:DAS inviable APO:0000112 A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions. siegele 2016-07-01T22:15:10Z microbial_phenotype OMP:0007392 presence of microbial cell viability OMP:0007392 A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions. FYPO:0000124 OMP:DAS A cell viability phenotype where a microbial cell is not viable under the specified conditions. siegele 2016-07-01T22:15:10Z inviable cell microbial_phenotype inviable OMP:0007393 absence of microbial cell viability OMP:0007393 A cell viability phenotype where a microbial cell is not viable under the specified conditions. FYPO:0000049 OMP:DAS inviable cell FYPO:0000049 inviable APO:0000112 A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host. siegele 2016-07-06T13:10:19Z microbial_phenotype OMP:0007394 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. lethality phenotype OMP:0007394 A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host. OMP:DAS A lethality phenotype where infection by a microbe can cause death of the host. siegele 2016-07-06T13:12:26Z microbial_phenotype OMP:0007395 presence of lethality OMP:0007395 A lethality phenotype where infection by a microbe can cause death of the host. OMP:DAS A lethality phenotype where infection by a microbe does not cause death of the host. siegele 2016-07-06T13:12:26Z microbial_phenotype OMP:0007396 absence of lethality OMP:0007396 A lethality phenotype where infection by a microbe does not cause death of the host. OMP:DAS A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control. siegele 2016-07-06T13:12:26Z microbial_phenotype OMP:0007397 altered lethality OMP:0007397 A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control. OMP:DAS An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control. siegele 2016-07-06T13:12:26Z microbial_phenotype OMP:0007398 decreased lethality OMP:0007398 An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control. OMP:DAS A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished. siegele 2016-07-06T13:12:26Z microbial_phenotype OMP:0007399 abolished lethality OMP:0007399 A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished. OMP:DAS An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control. siegele 2016-07-06T13:12:26Z microbial_phenotype OMP:0007400 increased lethality OMP:0007400 An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control. OMP:DAS A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota). siegele 2016-07-06T14:29:13Z microbial_phenotype OMP:0007401 ascospore formation phenotype OMP:0007401 A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota). GO:0030437 OMP:DAS An ascospore formation phenotype where a microbe has the ability to form ascospores. siegele 2016-07-06T14:32:46Z APO:0000041 FYPO:0000590 microbial_phenotype OMP:0007402 presence of ascospore formation OMP:0007402 An ascospore formation phenotype where a microbe has the ability to form ascospores. OMP:DAS APO:0000041 sporulation FYPO:0000590 normal sporulation A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control. siegele 2016-07-09T13:22:30Z microbial_phenotype OMP:0007403 altered microbe-host interaction OMP:0007403 A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control. OMP:DAS A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished. siegele 2016-07-09T13:24:32Z microbial_phenotype OMP:0007404 abolished resistance to killing by host OMP:0007404 A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished. OMP:DAS A sporulation phenotype related to the formation of spores derived from the products of meiosis. siegele 2016-07-09T14:14:51Z GO:0034293 microbial_phenotype OMP:0007405 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. sexual sporulation phenotype OMP:0007405 A sporulation phenotype related to the formation of spores derived from the products of meiosis. GO:0034293 OMP:DAS GO:0034293 sexual sporulation A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. siegele 2016-07-09T14:24:56Z GO:0019953 microbial_phenotype OMP:0007406 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. sexual reproduction phenotype OMP:0007406 A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. GO:0019953 OMP:DAS An ascospore formation phenotype where a microbe lacks the ability to form ascospores. siegele 2016-07-09T14:47:12Z microbial_phenotype OMP:0007407 absence of ascospore formation OMP:0007407 An ascospore formation phenotype where a microbe lacks the ability to form ascospores. OMP:DAS An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control. siegele 2016-07-09T14:51:28Z microbial_phenotype abnormal sporulation OMP:0007408 altered ascospore formation OMP:0007408 An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control. OMP:DAS abnormal sporulation FYPO:0000121 A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria. siegele 2016-07-13T18:36:45Z microbial_phenotype OMP:0007409 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes are typically more resistant to dessication and other environmental stresses than vegetative cells. akinete morphology phenotype OMP:0007409 A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria. OMP:DAS PMID:11948167 doi:10.1046/j.1469-8137.1999.00505.x An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control. siegele 2016-07-13T18:43:01Z microbial_phenotype OMP:0007410 altered akinete morphology OMP:0007410 An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control. OMP:DAS A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control. siegele 2016-07-13T18:45:02Z microbial_phenotype OMP:0007411 altered spore morphology OMP:0007411 A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control. OMP:DAS A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types. dsiegele 2016-07-14T16:21:02Z FYPO:0000301 mating response microbial_phenotype OMP:0007412 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation with cellular fusion is found in Saccharomyces cerevisiae. mating phenotype OMP:0007412 A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types. GO:0000747 OMP:DAS FYPO:0000301 mating phenotype mating response APO:0000032 A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. dsiegele 2016-07-14T16:25:26Z GO:0000746 microbial_phenotype OMP:0007413 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation would be the transfer of a conjugative plasmid from a donor bacterium to a recipient bacterium. conjugation phenotype OMP:0007413 A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms. GO:0000746 OMP:DAS GO:0000746 conjugation A conjugation phenotype where mating does not occur through the process of conjugation. dsiegele 2016-07-14T16:32:10Z microbial_phenotype OMP:0007414 absence of conjugation OMP:0007414 A conjugation phenotype where mating does not occur through the process of conjugation. OMP:DAS A conjugation phenotype where mating occurs through the process of conjugation. dsiegele 2016-07-14T16:32:10Z microbial_phenotype OMP:0007415 presence of conjugation OMP:0007415 A conjugation phenotype where mating occurs through the process of conjugation. OMP:DAS A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control. dsiegele 2016-07-14T16:32:10Z microbial_phenotype OMP:0007416 altered conjugation OMP:0007416 A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control. OMP:DAS An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control. dsiegele 2016-07-14T16:36:35Z microbial_phenotype OMP:0007417 decreased conjugation OMP:0007417 An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control. OMP:DAS An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control. dsiegele 2016-07-14T16:36:35Z microbial_phenotype OMP:0007418 increased conjugation OMP:0007418 An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control. OMP:DAS A decreased conjugation phenotype where conjugation is abolished. dsiegele 2016-07-14T16:36:35Z microbial_phenotype OMP:0007419 abolished conjugation OMP:0007419 A decreased conjugation phenotype where conjugation is abolished. OMP:DAS An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control. siegele 2016-07-16T16:44:37Z microbial_phenotype OMP:0007420 increased akinete formation OMP:0007420 An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control. OMP:DAS An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control. siegele 2016-07-16T16:44:37Z microbial_phenotype OMP:0007421 decreased akinete formation OMP:0007421 An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control. OMP:DAS A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished. siegele 2016-07-16T16:44:37Z microbial_phenotype OMP:0007422 abolished akinete formation OMP:0007422 A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished. OMP:DAS A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control. siegele 2016-07-16T16:56:11Z microbial_phenotype budding index OMP:0007423 decreased budding frequency OMP:0007423 A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control. APO:0000089 OMP:DAS An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control. siegele 2016-07-16T16:58:06Z microbial_phenotype budding index OMP:0007424 increased budding frequency OMP:0007424 An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control. APO:0000089 OMP:DAS A schizogeny phenotype where an organism does not reproduce by the process of schizogeny. siegele 2016-07-16T17:12:16Z microbial_phenotype OMP:0007425 absence of schizogeny OMP:0007425 A schizogeny phenotype where an organism does not reproduce by the process of schizogeny. OMP:DAS An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control. siegele 2016-07-16T17:14:28Z microbial_phenotype OMP:0007426 increased schizogeny OMP:0007426 An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control. OMP:DAS An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control. siegele 2016-07-16T17:14:28Z microbial_phenotype OMP:0007427 decreased schizogeny OMP:0007427 An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control. OMP:DAS A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished. siegele 2016-07-16T17:14:28Z microbial_phenotype OMP:0007428 abolished schizogeny OMP:0007428 A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished. OMP:DAS An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control. siegele 2016-07-19T15:37:25Z microbial_phenotype OMP:0007429 increased asexual spore formation OMP:0007429 An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control. OMP:DAS An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control. siegele 2016-07-19T15:37:25Z microbial_phenotype OMP:0007430 decreased asexual spore formation OMP:0007430 An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control. OMP:DAS A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished. siegele 2016-07-19T15:37:25Z microbial_phenotype OMP:0007431 abolished asexual spore formation OMP:0007431 A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished. OMP:DAS An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control. siegele 2016-07-20T15:45:00Z microbial_phenotype OMP:0007432 altered number of flagella OMP:0007432 An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control. OMP:DAS A sexual sporulation phenotype where an organism is able to produce sexual spores. siegele 2016-07-27T19:29:30Z microbial_phenotype OMP:0007433 presence of sexual sporulation OMP:0007433 A sexual sporulation phenotype where an organism is able to produce sexual spores. OMP:DAS A sexual sporulation phenotype where an organism is not able to produce sexual spores. siegele 2016-07-27T19:29:30Z microbial_phenotype OMP:0007434 absence of sexual sporulation OMP:0007434 A sexual sporulation phenotype where an organism is not able to produce sexual spores. OMP:DAS A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control. siegele 2016-07-27T19:29:30Z microbial_phenotype OMP:0007435 altered sexual sporulation OMP:0007435 A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control. OMP:DAS An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control. siegele 2016-07-27T19:29:30Z microbial_phenotype OMP:0007436 increased sexual sporulation OMP:0007436 An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control. OMP:DAS An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control. siegele 2016-07-27T19:29:30Z microbial_phenotype OMP:0007437 decreased sexual sporulation OMP:0007437 An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control. OMP:DAS A decreased sexual sporulation phenotype where the formation of sexual spores is abolished. siegele 2016-07-27T19:29:30Z microbial_phenotype OMP:0007438 abolished sexual sporulation OMP:0007438 A decreased sexual sporulation phenotype where the formation of sexual spores is abolished. OMP:DAS A sexual reproduction phenotype where an organism is able to reproduce sexually. siegele 2016-07-27T19:32:00Z microbial_phenotype OMP:0007439 presence of sexual reproduction OMP:0007439 A sexual reproduction phenotype where an organism is able to reproduce sexually. OMP:DAS A sexual reproduction phenotype where an organism is not able to reproduce sexually. siegele 2016-07-27T19:32:00Z microbial_phenotype OMP:0007440 absence of sexual reproduction OMP:0007440 A sexual reproduction phenotype where an organism is not able to reproduce sexually. OMP:DAS A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control. siegele 2016-07-27T19:32:00Z microbial_phenotype OMP:0007441 altered sexual reproduction OMP:0007441 A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control. OMP:DAS A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus). siegele 2016-07-27T22:27:42Z microbial_phenotype OMP:0007442 presence of lethality in mice OMP:0007442 A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus). OMP:DAS A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus). siegele 2016-07-27T22:27:43Z microbial_phenotype OMP:0007443 presence of lethality in immunocompromised mice OMP:0007443 A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus). OMP:DAS An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus). siegele 2016-07-27T22:28:22Z microbial_phenotype OMP:0007444 absence of lethality in mice OMP:0007444 An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus). OMP:DAS An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus). siegele 2016-07-27T22:28:22Z microbial_phenotype OMP:0007445 absence of lethality in immunocompromised mice OMP:0007445 An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus). OMP:DAS A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. siegele 2016-07-27T22:29:04Z microbial_phenotype OMP:0007446 decreased lethality in mice OMP:0007446 A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. OMP:DAS A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control. siegele 2016-07-27T22:31:31Z microbial_phenotype OMP:0007447 decreased lethality in immunocompromised mice OMP:0007447 A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control. OMP:DAS A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished. siegele 2016-07-27T22:33:19Z microbial_phenotype OMP:0007448 abolished lethality in mice OMP:0007448 A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished. OMP:DAS A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished. siegele 2016-07-27T22:33:19Z microbial_phenotype OMP:0007449 abolished lethality in immunocompromised mice OMP:0007449 A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished. OMP:DAS A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. siegele 2016-07-27T22:40:08Z microbial_phenotype OMP:0007450 increased lethality in mice OMP:0007450 A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control. OMP:DAS A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control. siegele 2016-07-27T22:40:08Z microbial_phenotype OMP:0007451 increased lethality in immunocompromised mice OMP:0007451 A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control. OMP:DAS A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages. dsiegele 2016-08-08T14:58:53Z microbial_phenotype OMP:0007452 presence of survival in macrophage OMP:0007452 A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages. OMP:DAS dsiegele 2016-08-08T15:15:44Z microbial_phenotype OMP:0007453 absence of survival in macrophage OMP:0007453 dsiegele 2016-08-08T15:16:09Z microbial_phenotype OMP:0007454 altered survival in macrophage OMP:0007454 dsiegele 2016-08-08T15:17:42Z microbial_phenotype OMP:0007455 survival in macrophage phenotype OMP:0007455 A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce. dsiegele 2016-08-10T14:51:48Z microbial_phenotype OMP:0007456 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. population viability phenotype OMP:0007456 A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce. FYPO:0002057 OMP:DAS A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions. dsiegele 2016-08-10T14:56:12Z FYPO:0002058 microbial_phenotype OMP:0007457 viable cell population OMP:0007457 A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions. OMP:DAS FYPO:0002058 viable cell population A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions. dsiegele 2016-08-10T14:56:12Z FYPO:0002059 inviable cell population microbial_phenotype OMP:0007458 nonviable cell population OMP:0007458 A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions. FYPO:0002059 OMP:DAS FYPO:0002059 inviable cell population A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control. dsiegele 2016-08-10T14:56:12Z microbial_phenotype OMP:0007459 altered cell population viability OMP:0007459 A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control. OMP:DAS A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle. dsiegele 2016-08-10T15:00:12Z FYPO:0002060 microbial_phenotype OMP:0007460 viable vegetative cell population OMP:0007460 A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle. FYPO:0002060 OMP:DAS FYPO:0002060 viable vegetative cell population A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle. dsiegele 2016-08-10T15:16:25Z FYPO:0002061 microbial_phenotype inviable vegetative cell population OMP:0007461 nonviable vegetative cell population OMP:0007461 A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle. FYPO:0002061 OMP:DAS FYPO:0002061 inviable vegetative cell population A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host. siegele 2016-09-04T21:42:45Z colonization of silkworm (Bombyx mori) microbial_phenotype OMP:0007462 colonization of invertebrate host phenotype OMP:0007462 A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host. OMP:DAS colonization of silkworm (Bombyx mori) TaxonomyID:7091 A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells. dsiegele 2016-09-12T14:35:40Z APO:0000065 microbial_phenotype OMP:0007463 presence of flocculation OMP:0007463 A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells. OMP:DAS APO:0000065 flocculation A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells. dsiegele 2016-09-12T14:35:40Z microbial_phenotype OMP:0007464 absence of flocculation OMP:0007464 A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells. OMP:DAS A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control. dsiegele 2016-09-12T14:35:40Z microbial_phenotype OMP:0007465 altered flocculation OMP:0007465 A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control. OMP:JG An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control. dsiegele 2016-09-12T14:35:40Z microbial_phenotype OMP:0007466 increased flocculation OMP:0007466 An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control. OMP:JG An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control. dsiegele 2016-09-12T14:35:40Z microbial_phenotype OMP:0007467 decreased flocculation OMP:0007467 An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control. OMP:JG A decreased flocculation phenotype where flocculation is abolished. dsiegele 2016-09-12T14:35:40Z microbial_phenotype OMP:0007468 abolished flocculation OMP:0007468 A decreased flocculation phenotype where flocculation is abolished. OMP:JG A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control. dsiegele 2016-09-12T15:14:45Z microbial_phenotype OMP:0007469 altered liquid culture morphology OMP:0007469 A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control. OMP:DAS A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control. dsiegele 2016-09-12T15:16:19Z microbial_phenotype OMP:0007470 altered population morphology OMP:0007470 A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control. OMP:DAS An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control. dsiegele 2016-09-13T14:35:10Z microbial_phenotype OMP:0007471 increased ascospore formation OMP:0007471 An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control. OMP:DAS An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control. dsiegele 2016-09-13T14:35:10Z microbial_phenotype OMP:0007472 decreased ascospore formation OMP:0007472 An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control. OMP:DAS An altered ascospore formation phenotype where the formation of ascospores is abolished. dsiegele 2016-09-13T14:35:10Z FYPO:0000583 microbial_phenotype OMP:0007473 abolished ascospore formation OMP:0007473 An altered ascospore formation phenotype where the formation of ascospores is abolished. OMP:DAS FYPO:0000583 abolished sporulation An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. dsiegele 2016-09-19T16:00:17Z phenols antimicrobial agent sensitivity phenotype gilvusmycin antimicrobial agent resistance phenotype phenol antimicrobial agent resistance phenotype triclosan antimicrobial agent resistance phenotype microbial_phenotype OMP:0007474 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. phenolic antimicrobial agent resistance phenotype OMP:0007474 An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. CHEBI:33853 OMP:DAS phenols antimicrobial agent sensitivity phenotype CHEBI:33853 gilvusmycin antimicrobial agent resistance phenotype CHEBI:65964 phenol antimicrobial agent resistance phenotype CHEBI:15882 triclosan antimicrobial agent resistance phenotype CHEBI:164200 A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols. dsiegele 2016-09-19T16:49:20Z microbial_phenotype OMP:0007475 resistant to phenols OMP:0007475 A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols. OMP:JG A phenols resistance phenotype where an organism or cell is sensitive to phenols. dsiegele 2016-09-19T16:49:20Z microbial_phenotype OMP:0007476 not resistant to phenols OMP:0007476 A phenols resistance phenotype where an organism or cell is sensitive to phenols. OMP:JG A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control. dsiegele 2016-09-19T16:49:20Z microbial_phenotype OMP:0007477 altered resistance to phenols OMP:0007477 A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control. OMP:JG An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control. dsiegele 2016-09-19T16:49:20Z microbial_phenotype OMP:0007478 increased resistance to phenols OMP:0007478 An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control. OMP:JG An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control. dsiegele 2016-09-19T16:49:20Z microbial_phenotype OMP:0007479 decreased resistance to phenols OMP:0007479 An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control. OMP:JG A decreased resistance to phenols phenotype where resistance to phenols is abolished. dsiegele 2016-09-19T16:49:20Z microbial_phenotype OMP:0007480 abolished resistance to phenols OMP:0007480 A decreased resistance to phenols phenotype where resistance to phenols is abolished. OMP:JG An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups. dsiegele 2016-09-19T17:10:16Z benzalkonium chloride resistance phenotype methyl green resistance phenotype quaternium-15 resistance phenotype microbial_phenotype OMP:0007481 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. quaternary ammonium salts antimicrobial agent resistance phenotype OMP:0007481 An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups. CHEBI:35273 OMP:DAS benzalkonium chloride resistance phenotype CHEBI:3020 methyl green resistance phenotype CHEBI:CHEBI:87649 quaternium-15 resistance phenotype CHEBI:59607 A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts. dsiegele 2016-09-19T17:10:16Z microbial_phenotype OMP:0007482 resistant to quaternary ammonium salt antimicrobial agent OMP:0007482 A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts. OMP:JG A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts. dsiegele 2016-09-19T17:10:16Z microbial_phenotype OMP:0007483 not resistant to quaternary ammonium salt antimicrobial agent OMP:0007483 A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts. OMP:JG A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control. dsiegele 2016-09-19T17:10:16Z microbial_phenotype OMP:0007484 altered resistance to quaternary ammonium salt antimicrobial agent OMP:0007484 A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control. OMP:JG An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control. dsiegele 2016-09-19T17:10:16Z microbial_phenotype OMP:0007485 increased resistance to quaternary ammonium salt antimicrobial agent OMP:0007485 An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control. OMP:JG An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control. dsiegele 2016-09-19T17:10:16Z microbial_phenotype OMP:0007486 decreased resistance to quaternary ammonium salt antimicrobial agent OMP:0007486 An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control. OMP:JG A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished. dsiegele 2016-09-19T17:10:16Z microbial_phenotype OMP:0007487 abolished resistance to quaternary ammonium salt antimicrobial agent OMP:0007487 A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished. OMP:JG An absence of motility phenotype where a microbe is not capable of gliding motility. siegele 2016-09-24T23:00:10Z microbial_phenotype OMP:0007488 absence of motility by gliding OMP:0007488 An absence of motility phenotype where a microbe is not capable of gliding motility. OMP:DAS An absence of motility phenotype where a microbe is not capable of swarming motility. siegele 2016-09-24T23:00:10Z microbial_phenotype OMP:0007489 absence of motility by swarming OMP:0007489 An absence of motility phenotype where a microbe is not capable of swarming motility. OMP:DAS An absence of motility phenotype where a microbe is not capable of swimming motility. siegele 2016-09-24T23:00:10Z microbial_phenotype OMP:0007490 absence of motility by swimming OMP:0007490 An absence of motility phenotype where a microbe is not capable of swimming motility. OMP:DAS An absence of motility phenotype where a microbe is not capable of twitching motility. siegele 2016-09-24T23:00:10Z microbial_phenotype OMP:0007491 absence of motility by twitching OMP:0007491 An absence of motility phenotype where a microbe is not capable of twitching motility. OMP:DAS A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control. siegele 2016-09-24T23:01:37Z microbial_phenotype OMP:0007492 altered motility by gliding OMP:0007492 A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control. OMP:DAS A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control. siegele 2016-09-24T23:01:37Z microbial_phenotype OMP:0007493 altered cell motility by twitching OMP:0007493 A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control. OMP:DAS A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished. siegele 2016-09-24T23:04:50Z microbial_phenotype OMP:0007494 abolished motility by twitching OMP:0007494 A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished. OMP:DAS An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring. siegele 2016-09-25T12:02:01Z cerulenin resistance phenotype microbial_phenotype OMP:0007495 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. epoxide resistance phenotype OMP:0007495 An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring. CHEBI:32955 OMP:DAS cerulenin resistance phenotype CHEBI:171741 An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide. siegele 2016-09-25T12:11:27Z microbial_phenotype OMP:0007496 resistant to an epoxide OMP:0007496 An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide. OMP:JG An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide. siegele 2016-09-25T12:11:27Z microbial_phenotype OMP:0007497 not resistant to an epoxide OMP:0007497 An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide. OMP:JG An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control. siegele 2016-09-25T12:11:27Z microbial_phenotype OMP:0007498 altered epoxide resistance OMP:0007498 An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control. OMP:JG An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control. siegele 2016-09-25T12:12:32Z microbial_phenotype OMP:0007499 increased resistance to an epoxide OMP:0007499 An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control. OMP:JG An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control. siegele 2016-09-25T12:12:32Z microbial_phenotype OMP:0007500 decreased resistance to an epoxide OMP:0007500 An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control. OMP:JG A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished. siegele 2016-09-25T12:12:32Z microbial_phenotype OMP:0007501 abolished resistance to an epoxide OMP:0007501 A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished. OMP:JG A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control. siegele 2016-09-25T13:45:05Z microbial_phenotype OMP:0007502 altered capsule morphology OMP:0007502 A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control. OMP:DAS An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control. siegele 2016-09-25T13:47:16Z microbial_phenotype OMP:0007503 altered capsule size OMP:0007503 An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control. OMP:DAS An altered capsule size phenotype where the size of the capsule is increased relative to a designated control. siegele 2016-09-25T13:49:19Z microbial_phenotype OMP:0007504 Increased capsule size OMP:0007504 An altered capsule size phenotype where the size of the capsule is increased relative to a designated control. OMP:DAS An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control. siegele 2016-09-25T13:49:19Z microbial_phenotype OMP:0007505 decreased capsule size OMP:0007505 An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control. OMP:DAS A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. siegele 2016-09-25T22:33:27Z FAO:0000063 microbial_phenotype OMP:0007506 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. titan cell morphology phenotype OMP:0007506 A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. FAO:0000063 OMP:DAS PMID:21821718 FAO:0000063 titan cell A titan cell phenotype where a microbe is able to form titan cells. siegele 2016-09-25T23:28:19Z microbial_phenotype OMP:0007507 presence of titan cells OMP:0007507 A titan cell phenotype where a microbe is able to form titan cells. OMP:DAS A titan cell phenotype where a microbe cannot form titan cells. siegele 2016-09-25T23:28:19Z microbial_phenotype OMP:0007508 absence of titan cells OMP:0007508 A titan cell phenotype where a microbe cannot form titan cells. OMP:DAS A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control. siegele 2016-09-25T23:28:19Z microbial_phenotype OMP:0007509 altered titan cell morphology OMP:0007509 A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control. OMP:DAS A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control. siegele 2016-09-25T23:32:51Z microbial_phenotype OMP:0007510 altered titan cell formation OMP:0007510 A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control. OMP:DAS A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete. siegele 2016-12-19T14:07:15Z microbial_phenotype OMP:0007511 ascospore morphology phenotype OMP:0007511 A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete. CL:0000607 FAO:0000020 OMP:DAS An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control. siegele 2016-12-19T14:12:30Z microbial_phenotype OMP:0007512 altered ascospore morphology OMP:0007512 An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control. OMP:DAS An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control. siegele 2016-12-19T14:16:33Z microbial_phenotype OMP:0007513 altered endospore morphology OMP:0007513 An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control. OMP:DAS A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control. dsiegele 2017-02-20T15:38:16Z microbial_phenotype OMP:0007514 decreased negative osmotaxis OMP:0007514 A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control. dsiegele 2017-02-20T15:38:16Z microbial_phenotype OMP:0007515 decreased positive osmotaxis OMP:0007515 A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control. OMP:DAS A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both. dsiegele 2017-02-20T15:58:54Z microbial_phenotype OMP:0007516 population growth in high osmolarity phenotype OMP:0007516 A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both. OMP:DAS A population growth phenotype where a microbial population can grow in conditions of high osmolarity. dsiegele 2017-02-20T15:59:09Z microbial_phenotype normal growth during cellular response to high osmolarity OMP:0007517 presence of population growth in high osmolarity OMP:0007517 A population growth phenotype where a microbial population can grow in conditions of high osmolarity. OMP:DAS normal growth during cellular response to high osmolarity FYPO:0001022 A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity. dsiegele 2017-02-20T15:59:09Z microbial_phenotype OMP:0007518 absence of population growth in high osmolarity OMP:0007518 A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity. OMP:DAS A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control. dsiegele 2017-02-20T15:59:09Z microbial_phenotype OMP:0007519 altered population growth in high osmolarity OMP:0007519 A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control. OMP:DAS An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both. dsiegele 2017-02-20T16:03:09Z microbial_phenotype OMP:0007520 increased population growth in high osmolarity OMP:0007520 An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both. OMP:DAS An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both. dsiegele 2017-02-20T16:03:09Z microbial_phenotype OMP:0007521 decreased population growth in high osmolarity OMP:0007521 An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both. OMP:DAS A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity. dsiegele 2017-02-20T16:03:16Z microbial_phenotype OMP:0007522 abolished population growth in high osmolarity OMP:0007522 A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity. OMP:DAS A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control. dsiegele 2017-02-20T16:06:25Z microbial_phenotype OMP:0007523 altered population growth range OMP:0007523 A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control. OMP:DAS A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host. dsiegele 2017-02-20T16:43:30Z microbial_phenotype OMP:0007524 presence of lethality in an invertebrate host OMP:0007524 A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host. OMP:DAS An absence of lethality phenotype where the infected host is an invertebrate. dsiegele 2017-02-20T16:46:31Z microbial_phenotype OMP:0007525 absence of lethality in an invertebrate host OMP:0007525 An absence of lethality phenotype where the infected host is an invertebrate. OMP:DAS An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control. dsiegele 2017-02-20T16:48:08Z microbial_phenotype OMP:0007526 altered lethality in an invertebrate host OMP:0007526 An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control. OMP:DAS An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control. dsiegele 2017-02-20T16:49:04Z microbial_phenotype OMP:0007527 altered lethality in an amoeba host OMP:0007527 An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control. OMP:DAS A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host. dsiegele 2017-02-20T16:54:13Z microbial_phenotype OMP:0007528 presence of lethality in an amoeba host OMP:0007528 A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host. OMP:DAS An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host. dsiegele 2017-02-20T16:55:05Z microbial_phenotype OMP:0007529 absence of lethality in an amoeba host OMP:0007529 An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host. OMP:DAS An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control. dsiegele 2017-02-20T16:57:15Z microbial_phenotype OMP:0007530 decreased lethality in an amoeba host OMP:0007530 An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control. OMP:DAS An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control. dsiegele 2017-02-20T16:57:15Z microbial_phenotype OMP:0007531 increased lethality in an amoeba host OMP:0007531 An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control. OMP:DAS A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished. dsiegele 2017-02-20T16:59:35Z microbial_phenotype OMP:0007532 abolished lethality in an amoeba host OMP:0007532 A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished. OMP:DAS An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea. OMP:0007195 siegele 2017-02-24T13:14:38Z microbial_phenotype OMP:0007533 The original term and its children were deemed to be too granular and were replaced with OMP:0007195 ! chemical resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. OMP:0007247 resistant to a chemical OMP:0007246 not resistant to a chemical OMP:0007248 altered chemical resistance OMP:0007249 decreased resistance to a chemical OMP:0007883 abolished chemical resistance OMP:0007250 increased resistance to a chemical urea derivative resistance phenotype true OMP:0007533 An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea. CHEBI:47857 OMP:DAS A ureas resistance phenotype where a microbe is resistant to a derivative of urea. OMP:0007247 siegele 2017-02-24T13:18:35Z microbial_phenotype OMP:0007534 resistant to a urea derivative true OMP:0007534 A ureas resistance phenotype where a microbe is resistant to a derivative of urea. CHEBI:47857 OMP:DAS A ureas resistance phenotype where a microbe is not resistant to a derivative of urea. OMP:0007246 siegele 2017-02-24T13:18:35Z microbial_phenotype OMP:0007535 The original term was deemed to be too granular. not resistant to a urea derivative true OMP:0007535 A ureas resistance phenotype where a microbe is not resistant to a derivative of urea. CHEBI:47857 OMP:DAS A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control. OMP:0007248 siegele 2017-02-24T13:18:35Z microbial_phenotype OMP:0007536 The original term was deemed to be too granular and was replaced with OMP:0007248 ! altered resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. altered resistance to a urea derivative true OMP:0007536 A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control. CHEBI:47857 OMP:DAS An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control. OMP:0007250 siegele 2017-02-24T13:19:13Z decreased sensitivity to a urea derivative decreased sensitivity to hydroxyurea microbial_phenotype OMP:0007537 The original term was deemed to be too granular and were replaced with OMP:0007250 ! increased resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. increased resistance to a urea derivative true OMP:0007537 An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control. OMP:DAS decreased sensitivity to hydroxyurea CHEBI:44423 An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control. OMP:0007249 siegele 2017-02-24T13:19:13Z increased sensitivity to a urea derivative increased sensitivity to hydroxyurea microbial_phenotype OMP:0007538 The original term was deemed to be too granular and were replaced with OMP:0007249 decreased resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. decreased resistance to a urea derivative true OMP:0007538 An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control. OMP:DAS increased sensitivity to hydroxyurea CHEBI:44423 A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished. OMP:0007883 siegele 2017-02-24T13:19:20Z microbial_phenotype OMP:0007539 The original term was deemed to be too granular and were replaced with OMP:0007883 ! abolished resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. abolished resistance to a urea derivative true OMP:0007539 A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished. OMP:DAS A microbial phenotype related to the form and structure of a virus. siegele 2017-04-19T13:39:46Z microbial_phenotype OMP:0007540 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. virus phenotype OMP:0007540 A microbial phenotype related to the form and structure of a virus. OMP:DR A virus phenotype related to the form and structure of a virion. siegele 2017-04-19T13:42:41Z microbial_phenotype OMP:0007541 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. virion morphology phenotype OMP:0007541 A virus phenotype related to the form and structure of a virion. OMP:DR An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating. siegele 2017-05-29T16:17:29Z GO:0000905 homokaryotic fruiting phenotype monokaryotic fruiting phenotype microbial_phenotype OMP:0007542 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. haploid fruiting phenotype OMP:0007542 An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating. OMP:DAS GO:0000905 sporocarp development involved in asexual reproduction A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting. siegele 2017-05-29T16:19:54Z presence of monokaryotic fruiting microbial_phenotype OMP:0007543 presence of haploid fruiting OMP:0007543 A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting. OMP:DAS A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting. siegele 2017-05-29T16:21:37Z absence of monokaryotic fruiting microbial_phenotype OMP:0007544 absence of haploid fruiting OMP:0007544 A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting. OMP:DAS A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control. siegele 2017-05-29T16:24:41Z altered monokaryotic fruiting microbial_phenotype OMP:0007545 altered haploid fruiting OMP:0007545 A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control. OMP:DAS An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control. siegele 2017-05-29T16:27:37Z increased monokaryotic fruiting microbial_phenotype OMP:0007546 increased haploid fruiting OMP:0007546 An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control. OMP:DAS An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control. siegele 2017-05-29T16:27:37Z decreased monokaryotic fruiting microbial_phenotype OMP:0007547 decreased haploid fruiting OMP:0007547 An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control. OMP:DAS A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished. siegele 2017-05-29T16:27:37Z abolished monokaryotic fruiting microbial_phenotype OMP:0007548 abolished haploid fruiting OMP:0007548 A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished. OMP:DAS This term was made obsolete because it is a duplicate of OMP:0007351. OMP:0007351 siegele 2017-05-29T16:35:44Z microbial_phenotype OMP:0007549 altered biological process phenotype true OMP:0007549 This term was made obsolete because it is a duplicate of OMP:0007351. OMP:DAS DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations. OMP:0007157 siegele 2017-05-29T16:37:18Z microbial_phenotype OMP:0007550 altered population growth - duplicate term true OMP:0007550 DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations. OMP:DAS An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. siegele 2017-05-29T17:45:32Z increased rate of monokaryotic fruiting microbial_phenotype OMP:0007551 increased rate of haploid fruiting OMP:0007551 An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. OMP:DAS A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. siegele 2017-05-29T17:48:15Z decreased rate of monokaryotic fruiting microbial_phenotype OMP:0007552 decreased rate of haploid fruiting OMP:0007552 A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control. OMP:DAS A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell. siegele 2017-05-30T14:37:57Z microbial_phenotype OMP:0007553 clamp cell morphology phenotype OMP:0007553 A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell. DOI:10.1007/978-3-642-22916-9_10 FAO:0000060 OMP:DAS A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. siegele 2017-05-30T15:28:59Z microbial_phenotype OMP:0007554 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. titan cell formation phenotype OMP:0007554 A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses. FAO:0000063 OMP:DAS PMID:21821718 A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism. siegele 2017-05-30T15:39:20Z microbial_phenotype OMP:0007555 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. multicellular microorganism morphology phenotype OMP:0007555 A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism. OMP:DAS A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall. siegele 2017-05-30T16:03:57Z microbial_phenotype OMP:0007556 hyphal morphology phenotype OMP:0007556 A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall. OMP:DAS A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape. siegele 2017-05-30T16:34:41Z hyphal growth phenotype microbial_phenotype OMP:0007557 filamentous growth of a multicellular organism phenotype OMP:0007557 A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape. GO:0044181 OMP:DAS A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae. siegele 2017-05-30T16:44:54Z microbial_phenotype OMP:0007558 clamp cell formation phenotype OMP:0007558 A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae. OMP:DAS PMID:15162390 siegele 2017-05-30T17:04:06Z microbial_phenotype OMP:0007559 clamp connection morphology phenotype OMP:0007559 An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores. dsiegele 2017-06-19T15:29:04Z microbial_phenotype OMP:0007560 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. conidiation phenotype OMP:0007560 An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores. FAO:0000024 GO:0048315 OMP:DAS A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle. dsiegele 2017-06-20T15:55:03Z normal meiosis microbial_phenotype abnormal meiosis OMP:0007561 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. meiotic nuclear division phenotype OMP:0007561 A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle. GO:0140013 OMP:DAS normal meiosis FYPO:0000478 abnormal meiosis FYPO:0000051 A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur. dsiegele 2017-06-20T16:09:31Z FYPO:0000478 microbial_phenotype OMP:0007562 presence of meiotic nuclear division OMP:0007562 A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur. GO:00140013 OMP:DAS FYPO:0000478 normal meiosis A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent. dsiegele 2017-06-20T16:09:31Z microbial_phenotype OMP:0007563 absence of meiotic nuclear division OMP:0007563 A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent. OMP:DAS A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control. dsiegele 2017-06-20T16:09:31Z microbial_phenotype OMP:0007564 altered meiotic nuclear division OMP:0007564 A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control. OMP:DAS An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished. dsiegele 2017-06-20T16:12:11Z FYPO:0000474 microbial_phenotype OMP:0007565 abolished meiotic nuclear division OMP:0007565 An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished. FYPO:0000474 OMP:DAS FYPO:0000474 abolished meiosis An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur. dsiegele 2017-06-20T16:18:05Z FYPO:0003378 microbial_phenotype OMP:0007566 abolished meiosis I OMP:0007566 An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur. GO:0007127 OMP:DAS FYPO:0003378 abolished meiosis I An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur. dsiegele 2017-06-20T16:18:05Z FYPO:0003379 microbial_phenotype OMP:0007567 abolished meiosis II OMP:0007567 An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur. GO:0007135 OMP:DAS FYPO:0003379 abolished meiosis II A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress. dsiegele 2017-06-21T14:34:05Z resistant to a stress sensitive to a stress microbial_phenotype OMP:0007568 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. Use a descendant of this term if you have assayed growth of cells exposed to a stress in culture. If you have assayed the response to a stress at the subcellular or molecular level, consider annotating to one of the descendants of 'response to stress phenotype' (OMP:0000173). resistance to stress phenotype OMP:0007568 A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress. FYPO:0002046 OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species. dsiegele 2017-06-21T14:51:26Z resistance to hydrogen peroxide stress microbial_phenotype OMP:0007569 resistance to oxidative stress phenotype OMP:0007569 A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species. OMP:DAS A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress. dsiegele 2017-06-21T14:58:47Z resistant to oxidative stress microbial_phenotype OMP:0007570 presence of resistance to oxidative stress OMP:0007570 A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress. OMP:DAS A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress. dsiegele 2017-06-21T14:59:22Z FYPO:0000726 sensitive to oxidative stress microbial_phenotype OMP:0007571 absence of resistance to oxidative stress OMP:0007571 A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress. OMP:DAS FYPO:0000726 sensitive to oxidative stress A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control. dsiegele 2017-06-21T15:00:53Z microbial_phenotype OMP:0007572 altered resistance to stress OMP:0007572 A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control. OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5. dsiegele 2017-06-21T16:00:11Z microbial_phenotype OMP:0007573 resistance to pH shock phenotype OMP:0007573 A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5. OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5). dsiegele 2017-06-21T16:01:32Z microbial_phenotype OMP:0007574 resistance to alkaline pH stress phenotype OMP:0007574 A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5). OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress. dsiegele 2017-06-21T16:05:55Z microbial_phenotype OMP:0007575 resistance to dessication stress phenotype OMP:0007575 A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress. OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation. dsiegele 2017-06-21T16:08:28Z microbial_phenotype OMP:0007576 resistance to radiation stress phenotype OMP:0007576 A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation. OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical. dsiegele 2017-06-21T16:14:11Z microbial_phenotype OMP:0007577 resistance to chemical stress phenotype OMP:0007577 A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical. OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe. siegele 2017-06-25T18:41:35Z microbial_phenotype OMP:0007578 resistance to cold shock phenotype OMP:0007578 A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe. FYPO:0006084 OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe. siegele 2017-06-25T18:42:01Z microbial_phenotype OMP:0007579 resistance to heat shock phenotype OMP:0007579 A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe. FYPO:0002045 OMP:DAS A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe. siegele 2017-06-25T18:48:47Z cold resistant resistant to low temperature microbial_phenotype OMP:0007580 presence of resistance to cold shock OMP:0007580 A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe. OMP:DAS A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe. siegele 2017-06-25T18:48:47Z cold sensitive cold sensitivity microbial_phenotype OMP:0007581 absence of resistance to cold shock OMP:0007581 A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe. OMP:DAS cold sensitive YPO:0000148 cold sensitivity APO:0000148 A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control. siegele 2017-06-25T18:48:47Z microbial_phenotype OMP:0007582 altered resistance to cold shock OMP:0007582 A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control. OMP:DAS A resistance to heat shock phenotype where a microbial population is resistant to heat shock. siegele 2017-06-25T18:54:38Z resistance to heat shock resistant to heat shock microbial_phenotype OMP:0007583 presence of resistance to heat shock OMP:0007583 A resistance to heat shock phenotype where a microbial population is resistant to heat shock. OMP:DAS resistance to heat shock FYPO:0002045 A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock. siegele 2017-06-25T18:54:39Z sensitive to heat shock microbial_phenotype OMP:0007584 absence of resistance to heat shock OMP:0007584 A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock. OMP:DAS A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control. siegele 2017-06-25T18:54:39Z microbial_phenotype OMP:0007585 altered resistance to heat OMP:0007585 A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control. OMP:DAS A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control. siegele 2017-06-25T19:35:57Z microbial_phenotype OMP:0007586 altered resistance to chemical stress OMP:0007586 A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control. OMP:DAS An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control. siegele 2017-06-25T22:21:53Z microbial_phenotype OMP:0007587 increased resistance to cold shock OMP:0007587 An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control. OMP:DAS An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control. siegele 2017-06-25T22:21:53Z microbial_phenotype OMP:0007588 decreased resistance to cold shock OMP:0007588 An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control. OMP:DAS A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished. siegele 2017-06-25T22:21:53Z microbial_phenotype OMP:0007589 abolished resistance to cold shock OMP:0007589 A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished. OMP:DAS An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control. siegele 2017-06-25T22:26:03Z FYPO:0002626 microbial_phenotype OMP:0007590 increased resistance to heat OMP:0007590 An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control. OMP:DAS FYPO:0002626 resistance to heat An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control. siegele 2017-06-25T22:26:03Z microbial_phenotype OMP:0007591 decreased resistance to heat shock OMP:0007591 An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control. OMP:DAS A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished. siegele 2017-06-25T22:26:03Z microbial_phenotype OMP:0007592 abolished resistance to heat shock OMP:0007592 A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished. OMP:DAS A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing. siegele 2017-06-26T17:11:33Z microbial_phenotype OMP:0007593 resistance to freeze-thaw stress phenotype OMP:0007593 A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing. OMP:DAS A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control. siegele 2017-06-26T20:24:54Z microbial_phenotype OMP:0007594 altered resistance to radiation stress OMP:0007594 A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control. OMP:DAS A population growth phenotype where a microbial population is able to reproduce. siegele 2017-06-27T12:19:09Z microbial_phenotype OMP:0007595 presence of population growth OMP:0007595 A population growth phenotype where a microbial population is able to reproduce. OMP:das A population growth phenotype where the number of individuals in a microbial population does not increase. siegele 2017-06-27T12:19:09Z microbial_phenotype OMP:0007596 absence of population growth OMP:0007596 A population growth phenotype where the number of individuals in a microbial population does not increase. OMP:DAS An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control. siegele 2017-06-27T12:40:34Z microbial_phenotype OMP:0007597 increased population growth OMP:0007597 An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control. OMP:DAS An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control. siegele 2017-06-27T12:40:34Z microbial_phenotype OMP:0007598 decreased population growth OMP:0007598 An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control. OMP:DAS A decreased population growth phenotype where reproduction of a microbial population is abolished. siegele 2017-06-27T12:40:34Z microbial_phenotype OMP:0007599 abolished population growth OMP:0007599 A decreased population growth phenotype where reproduction of a microbial population is abolished. OMP:DAS A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. siegele 2017-06-27T17:34:40Z microbial_phenotype OMP:0007600 presence of chromosome segregation OMP:0007600 A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells. OMP:DAS A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells. siegele 2017-06-27T17:34:40Z microbial_phenotype OMP:0007601 absence of chromosome segregation OMP:0007601 A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells. OMP:DAS A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA. siegele 2017-06-27T21:46:34Z microbial_phenotype OMP:0007602 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. DNA break phenotype OMP:0007602 A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA. OMP:DAS A DNA break phenotype where breaks in chromosomal DNA occur. siegele 2017-06-27T21:49:30Z microbial_phenotype OMP:0007603 presence of DNA breaks OMP:0007603 A DNA break phenotype where breaks in chromosomal DNA occur. OMP:DAS A DNA break phenotype where breaks in chromosomal DNA don't occur. siegele 2017-06-27T21:49:30Z microbial_phenotype OMP:0007604 absence of DNA breaks OMP:0007604 A DNA break phenotype where breaks in chromosomal DNA don't occur. OMP:DAS A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control. siegele 2017-06-27T21:49:30Z microbial_phenotype OMP:0007605 altered frequency of DNA breaks OMP:0007605 A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control. OMP:DAS An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control. siegele 2017-06-27T21:52:51Z microbial_phenotype OMP:0007606 increased frequency of DNA breaks OMP:0007606 An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control. OMP:DAS An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control. siegele 2017-06-27T21:52:51Z microbial_phenotype OMP:0007607 decreased frequency of DNA breaks OMP:0007607 An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control. OMP:DAS A decreased frequency of DNA breaks phenotype where DNA breaks are abolished. siegele 2017-06-27T21:52:51Z microbial_phenotype OMP:0007608 abolished DNA breaks OMP:0007608 A decreased frequency of DNA breaks phenotype where DNA breaks are abolished. OMP:DAS A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur. siegele 2017-06-27T21:53:37Z microbial_phenotype OMP:0007609 presence of single-strand DNA breaks OMP:0007609 A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur. OMP:DAS A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur. siegele 2017-06-27T21:53:37Z microbial_phenotype OMP:0007610 presence of double-strand DNA breaks OMP:0007610 A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur. OMP:DAS An absence of DNA breaks phenotype where single-strand DNA breaks don't occur. siegele 2017-06-27T21:54:07Z microbial_phenotype OMP:0007611 absence of single-strand DNA breaks OMP:0007611 An absence of DNA breaks phenotype where single-strand DNA breaks don't occur. OMP:DAS An absence of DNA breaks phenotype where double-strand DNA breaks don't occur. siegele 2017-06-27T21:54:07Z microbial_phenotype OMP:0007612 absence of double-strand DNA breaks OMP:0007612 An absence of DNA breaks phenotype where double-strand DNA breaks don't occur. OMP:DAS An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control. siegele 2017-06-27T21:54:53Z microbial_phenotype OMP:0007613 increased frequency of single-strand DNA breaks OMP:0007613 An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control. OMP:DAS An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control. siegele 2017-06-27T21:54:53Z microbial_phenotype OMP:0007614 increased frequency of double-strand DNA breaks OMP:0007614 An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control. OMP:DAS A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control. siegele 2017-06-27T21:55:25Z microbial_phenotype OMP:0007615 decreased frequency of single-strand DNA breaks OMP:0007615 A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control. OMP:DAS A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control. siegele 2017-06-27T21:55:25Z microbial_phenotype OMP:0007616 decreased frequency of double-strand DNA breaks OMP:0007616 A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control. OMP:DAS A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA. siegele 2017-06-28T13:51:06Z microbial_phenotype OMP:0007617 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Holliday junction structure phenotype OMP:0007617 A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA. OMP:DAS A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA. siegele 2017-06-28T13:53:37Z microbial_phenotype OMP:0007618 presence of Holliday junction structures OMP:0007618 A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA. OMP:DAS A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA. siegele 2017-06-28T13:53:37Z microbial_phenotype OMP:0007619 absence of Holliday junction structures OMP:0007619 A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA. OMP:DAS A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control. siegele 2017-06-28T13:53:37Z microbial_phenotype OMP:0007620 altered frequency of Holliday junction structures OMP:0007620 A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control. OMP:DAS An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control. siegele 2017-06-28T13:56:30Z microbial_phenotype OMP:0007621 increased frequency of Holliday junction structures OMP:0007621 An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control. OMP:DAS An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control. siegele 2017-06-28T13:56:30Z microbial_phenotype OMP:0007622 decreased frequency of Holliday junction structures OMP:0007622 An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control. OMP:DAS A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished. siegele 2017-06-28T13:56:30Z microbial_phenotype OMP:0007623 abolished Holliday junction structures OMP:0007623 A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished. OMP:DAS A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029). dsiegele 2017-07-05T13:24:55Z APO:0000199 microbial_phenotype OMP:0007624 presence of chitin in cell wall OMP:0007624 A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029). OMP:DAS APO:0000199 chitin deposition A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029). dsiegele 2017-07-05T13:40:27Z microbial_phenotype OMP:0007625 absence of chitin in cell wall OMP:0007625 A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029). OMP:DAS An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control. dsiegele 2017-07-05T13:42:09Z microbial_phenotype OMP:0007626 altered cell wall chitin level OMP:0007626 An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control. OMP:DAS An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control. dsiegele 2017-07-05T13:44:03Z microbial_phenotype OMP:0007627 increased cell wall chitin level OMP:0007627 An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control. OMP:DAS An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control. dsiegele 2017-07-05T13:44:03Z microbial_phenotype OMP:0007628 decreased cell wall chitin level OMP:0007628 An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control. OMP:DAS A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished. dsiegele 2017-07-05T13:44:03Z microbial_phenotype OMP:0007629 abolished chitin in cell wall OMP:0007629 A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished. OMP:DAS An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected. dsiegele 2017-07-05T14:26:32Z microbial_phenotype OMP:0007630 altered cell wall protein level OMP:0007630 An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected. OMP:DAS An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control. dsiegele 2017-07-05T16:47:42Z microbial_phenotype OMP:0007631 increased cell wall protein level OMP:0007631 An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control. OMP:DAS A microbial phenotype that is observed at the level of an individual cell. dsiegele 2017-07-05T16:09:49Z FYPO:0000002 microbial_phenotype OMP:0007632 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. cell phenotype OMP:0007632 A microbial phenotype that is observed at the level of an individual cell. FYPO:0000002 OMP:DAS FYPO:0000002 cell phenotype A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component. dsiegele 2017-07-05T16:19:07Z FYPO:0000136 microbial_phenotype OMP:0007633 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. cellular physical quality phenotype OMP:0007633 A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component. FYPO:0000136 OMP:DAS FYPO:0000136 cellular physical quality phenotype A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control. dsiegele 2017-07-05T16:20:55Z microbial_phenotype OMP:0007634 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. altered level of substance in cell OMP:0007634 A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control. FYPO:0000989 OMP:DAS An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected. dsiegele 2017-07-05T16:24:26Z microbial_phenotype OMP:0007635 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. altered protein level OMP:0007635 An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected. FYPO:0000834 OMP:DAS An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control. dsiegele 2017-07-05T16:28:00Z microbial_phenotype OMP:0007636 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. altered polysaccharide level OMP:0007636 An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control. FYPO:0001085 OMP:DAS A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control. dsiegele 2017-07-05T16:31:01Z abnormal cellular physical quality phenotype microbial_phenotype OMP:0007637 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered cellular physical quality phenotype OMP:0007637 A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control. OMP:DAS abnormal cellular physical quality phenotype FYPO:0004638 A phenotype observed at the level of an individual cell that is altered relative to a designated control. dsiegele 2017-07-05T16:32:45Z microbial_phenotype OMP:0007638 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered cell phenotype OMP:0007638 A phenotype observed at the level of an individual cell that is altered relative to a designated control. OMP:DAS An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control. dsiegele 2017-07-05T16:47:42Z microbial_phenotype OMP:0007639 decreased cell wall protein level OMP:0007639 An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control. OMP:DAS A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished. dsiegele 2017-07-05T16:47:42Z microbial_phenotype OMP:0007640 abolished cell wall protein level OMP:0007640 A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished. OMP:DAS A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed. siegele 2017-07-11T02:11:36Z microbial_phenotype OMP:0007641 population growth yield phenotype OMP:0007641 A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed. OMP:DAS A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control. siegele 2017-07-11T02:22:26Z altered population density at growth saturation microbial_phenotype OMP:0007642 altered population growth yield OMP:0007642 A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control. OMP:DAS An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control. siegele 2017-07-11T02:24:32Z increased population density at growth saturation microbial_phenotype OMP:0007643 increased population growth yield OMP:0007643 An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control. OMP:DAS An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control. siegele 2017-07-11T02:24:32Z decreased population density at growth saturation microbial_phenotype OMP:0007644 decreased population growth yield OMP:0007644 An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control. OMP:DAS A microbial phenotype related to the typical way of life of a microbe. siegele 2017-07-24T14:41:58Z microbial_phenotype OMP:0007645 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. microbial lifestyle phenotype OMP:0007645 A microbial phenotype related to the typical way of life of a microbe. OMP:DAS A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities. siegele 2017-07-24T14:45:18Z microbial_phenotype OMP:0007646 Free-living lifestyle phenotypes may include the expression of flagella, sensing apparati used for photo- and chemotactic behaviour, and quorum sensing pathways. Please request more specific child terms, as needed. free-living lifestyle phenotype OMP:0007646 A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities. OMP:DAS A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface. siegele 2017-07-24T14:59:31Z anchored lifestyle phenotype microbial_phenotype sessile lifestyle phenotype OMP:0007647 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like. attached lifestyle phenotype OMP:0007647 A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface. OMP:DAS An attached lifestyle phenotype where a microbe typically grows and reproduces while physically attached to a is the summative outcome of multiple phenotypes that, acting together, typically provide a microbe some advantage while competing for niche space while it is physically anchored to some portion of solid material. May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like. siegele 2017-07-26T17:24:06Z microbial_phenotype OMP:0007648 presence of an attached lifestyle OMP:0007648 An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces. siegele 2017-08-01T19:36:13Z mitomycin C resistance phenotype microbial_phenotype OMP:0007649 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. mitomycin resistance phenotype OMP:0007649 An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces. CHEBI:25357 OMP:DAS mitomycin C resistance phenotype CHEBI:27504 siegele 2017-08-01T19:40:50Z microbial_phenotype OMP:0007650 resistant to mitomycin OMP:0007650 siegele 2017-08-01T19:40:50Z microbial_phenotype OMP:0007651 not resistant to mitomycin OMP:0007651 A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control. siegele 2017-08-01T19:40:50Z microbial_phenotype OMP:0007652 altered mitomycin resistance OMP:0007652 A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control. OMP:DAS An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control. siegele 2017-08-01T19:42:07Z decreased sensitivity to mitomycin microbial_phenotype increased resistance to mitomycin C OMP:0007653 increased resistance to mitomycin OMP:0007653 An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control. OMP:DAS decreased sensitivity to mitomycin CHEBI:25357 increased resistance to mitomycin C CHEBI:27504 An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control. siegele 2017-08-01T19:42:07Z increased sensitivity to mitomycin decreased resistance to mitomycin C increased sensitivity to mitomycin C microbial_phenotype OMP:0007654 decreased resistance to mitomycin OMP:0007654 An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control. OMP:DAS increased sensitivity to mitomycin CHEBI:25357 decreased resistance to mitomycin C CHEBI:27504 increased sensitivity to mitomycin C CHEBI:27504 A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished. siegele 2017-08-01T19:42:07Z microbial_phenotype OMP:0007655 abolished resistance to mitomycin OMP:0007655 A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished. OMP:DAS siegele 2017-08-02T00:45:28Z microbial_phenotype OMP:0007656 level of substance in cell phenotype OMP:0007656 A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell. siegele 2017-08-02T00:47:58Z microbial_phenotype OMP:0007657 level of cellular reactive oxygen species phenotype OMP:0007657 A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell. FYPO:0003004 OMP:DAS siegele 2017-08-02T00:49:40Z microbial_phenotype OMP:0007658 presence of cellular reactive oxygen species OMP:0007658 siegele 2017-08-02T00:49:40Z microbial_phenotype OMP:0007659 absence of cellular reactive oxygen species OMP:0007659 A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control. siegele 2017-08-02T00:49:40Z microbial_phenotype OMP:0007660 altered level of cellular reactive oxygen species OMP:0007660 A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control. OMP:DAS An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control. siegele 2017-08-02T00:49:40Z microbial_phenotype OMP:0007661 increased level of cellular reactive oxygen species OMP:0007661 An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control. OMP:DAS siegele 2017-08-02T00:49:40Z microbial_phenotype OMP:0007662 decreased level of cellular reactive oxygen species OMP:0007662 siegele 2017-08-02T00:49:40Z microbial_phenotype OMP:0007663 abolished cellular reactive oxygen species OMP:0007663 An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control. dsiegele 2017-09-28T10:15:36Z microbial_phenotype OMP:0007666 bulging cell morphology OMP:0007666 An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control. OMP:DAS PMID:27238023 An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide. dsiegele 2017-09-28T10:36:55Z microbial_phenotype OMP:0007667 filamenting cell morphology OMP:0007667 An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide. OMP:DAS A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells. siegele 2017-10-02T15:29:18Z microbial_phenotype OMP:0007668 presence of transport OMP:0007668 A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells. OMP:DAS A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells. siegele 2017-10-02T15:29:18Z microbial_phenotype OMP:0007669 absence of transport OMP:0007669 A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells. OMP:DAS A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control. siegele 2017-10-02T15:29:18Z microbial_phenotype OMP:0007670 altered transport OMP:0007670 A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control. OMP:DAS An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control. siegele 2017-10-02T15:29:18Z microbial_phenotype OMP:0007671 increased transport OMP:0007671 An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control. OMP:DAS An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control. siegele 2017-10-02T15:29:18Z microbial_phenotype OMP:0007672 decreased transport OMP:0007672 An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control. OMP:DAS A decreased transport phenotype where transport of a substrate(s) is abolished. siegele 2017-10-02T15:29:18Z microbial_phenotype OMP:0007673 abolished transport OMP:0007673 A decreased transport phenotype where transport of a substrate(s) is abolished. OMP:DAS A microbial phenotype that affects a specific molecular function. siegele 2017-10-02T15:42:03Z microbial_phenotype OMP:0007674 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. molecular function phenotype OMP:0007674 A microbial phenotype that affects a specific molecular function. FYPO:0000652 OMP:DAS A molecular function phenotype that affects a transporter activity in a microbe. siegele 2017-10-02T15:43:05Z microbial_phenotype OMP:0007675 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. transporter activity phenotype OMP:0007675 A molecular function phenotype that affects a transporter activity in a microbe. OMP:DAS A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate. siegele 2017-10-02T15:43:54Z microbial_phenotype OMP:0007676 presence of transporter activity OMP:0007676 A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate. OMP:DAS A transporter activity phenotype where a microbe lacks a specific transporter activity. siegele 2017-10-02T15:43:54Z microbial_phenotype OMP:0007677 absence of transporter activity OMP:0007677 A transporter activity phenotype where a microbe lacks a specific transporter activity. OMP:DAS An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control. siegele 2017-10-02T15:43:54Z microbial_phenotype OMP:0007678 altered transporter activity OMP:0007678 An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control. OMP:DAS An altered transporter activity phenotype where the observed rate of a specified transporter activity is decreased relative to a designated control. siegele 2017-10-02T15:44:25Z microbial_phenotype OMP:0007679 decreased transporter activity OMP:0007679 An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control. siegele 2017-10-02T15:44:25Z microbial_phenotype OMP:0007680 increased transporter activity OMP:0007680 An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control. OMP:DAS A decreased transporter activity phenotype where a specified transporter activity is abolished. siegele 2017-10-02T15:44:25Z microbial_phenotype OMP:0007681 abolished transporter activity OMP:0007681 A decreased transporter activity phenotype where a specified transporter activity is abolished. OMP:DAS A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable. dsiegele 2017-10-10T10:22:47Z microbial_phenotype OMP:0007682 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. terminal phenotype OMP:0007682 A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable. OMP:DAS dsiegele 2017-11-14T10:52:24Z microbial_phenotype OMP:0007683 bending cell morphology OMP:0007683 A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. dsiegele 2017-11-30T10:36:59Z normal cell growth microbial_phenotype OMP:0007684 cell growth phenotype OMP:0007684 A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. GO:0016049 OMP:das normal cell growth FYPO:0002062 A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. dsiegele 2017-11-30T10:42:26Z microbial_phenotype OMP:0007685 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. presence of cell growth OMP:0007685 A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:das A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present. dsiegele 2017-11-30T10:42:26Z microbial_phenotype OMP:0007686 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. absence of cell growth OMP:0007686 A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:das A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control. dsiegele 2017-11-30T10:42:26Z microbial_phenotype OMP:0007687 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. altered cell growth OMP:0007687 A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control. OMP:das An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control. dsiegele 2017-11-30T10:56:24Z microbial_phenotype OMP:0007688 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. decreased cell growth OMP:0007688 An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control. OMP:das An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control. dsiegele 2017-11-30T10:56:24Z microbial_phenotype OMP:0007689 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. increased cell growth OMP:0007689 An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control. OMP:das A decreased cell growth phenotype where cell growth is abolished. dsiegele 2017-11-30T10:56:24Z microbial_phenotype OMP:0007690 abolished cell growth OMP:0007690 A decreased cell growth phenotype where cell growth is abolished. OMP:das A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. siegele 2017-12-01T15:44:00Z microbial_phenotype OMP:0007691 vegetative cell growth phenotype OMP:0007691 A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. OMP:das A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle. siegele 2017-12-01T15:47:36Z microbial_phenotype OMP:0007692 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. presence of vegetative cell growth OMP:0007692 A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle. FYPO:0002085 OMP:das A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle. siegele 2017-12-01T15:47:36Z microbial_phenotype OMP:0007693 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. absence of vegetative cell growth OMP:0007693 A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle. OMP:das A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control. siegele 2017-12-01T15:47:36Z FYPO:0003154 microbial_phenotype OMP:0007694 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. altered vegetative cell growth OMP:0007694 A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control. FYPO:0003154 OMP:das FYPO:0003154 abnormal vegetative cell growth An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control. siegele 2017-12-01T15:47:36Z microbial_phenotype OMP:0007695 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. increased vegetative cell growth OMP:0007695 An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control. OMP:das An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. siegele 2017-12-01T15:47:37Z microbial_phenotype OMP:0007696 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. decreased vegetative cell growth OMP:0007696 An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:das A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished. siegele 2017-12-01T15:47:37Z microbial_phenotype OMP:0007697 Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. abolished vegetative cell growth OMP:0007697 A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished. OMP:das A population phenotype that is observed at the level of a population of microbial cells. siegele 2017-12-04T20:08:24Z cell population phenotype microbial_phenotype OMP:0007698 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell population phenotype OMP:0007698 A population phenotype that is observed at the level of a population of microbial cells. FYPO:0002057 OMP:das cell population phenotype FYPO:0002057 A cell population phenotype in which none of the cells in the population are viable. siegele 2017-12-04T20:14:07Z FYPO:0002059 microbial_phenotype OMP:0007699 nonviable cell population OMP:0007699 A cell population phenotype in which none of the cells in the population are viable. FYPO:0002059 OMP:das A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle. siegele 2017-12-04T20:15:43Z inviable vegetative cell population microbial_phenotype OMP:0007700 nonviable vegetative cell population OMP:0007700 A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle. FYPO:0002061 OMP:das inviable vegetative cell population FYPO:0002061 A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate. siegele 2017-12-04T20:19:36Z FYPO:000064 microbial_phenotype OMP:0007701 nonviable spore population OMP:0007701 A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate. FYPO:0000647 OMP:das FYPO:000064 inviable spore population An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control. siegele 2017-12-04T20:23:38Z microbial_phenotype OMP:0007702 decreased cell population viability OMP:0007702 An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control. OMP:das An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control. siegele 2017-12-04T20:23:38Z microbial_phenotype OMP:0007703 increased cell population viability OMP:0007703 An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control. OMP:das siegele 2017-12-04T20:23:38Z microbial_phenotype OMP:0007704 abolished cell population viability OMP:0007704 A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment. siegele 2017-12-04T20:26:35Z cell population viability microbial_phenotype OMP:0007705 cell population viability phenotype OMP:0007705 A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment. OMP:das cell population viability FYPO:0002057 A cell population phenotype in which cells in a population of spores are viable. siegele 2017-12-05T00:44:44Z FYPO:0003612 microbial_phenotype OMP:0007706 viable spore population OMP:0007706 A cell population phenotype in which cells in a population of spores are viable. FYPO:0003612 OMP:das FYPO:0003612 viable spore population An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control. siegele 2017-12-19T16:16:41Z FYPO:0001122 microbial_phenotype OMP:0007707 increased vegetative cell length OMP:0007707 An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control. OMP:das FYPO:0001122 elongated vegetative cell An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. siegele 2017-12-19T16:26:51Z abnormal vegetative cell shape microbial_phenotype OMP:0007708 altered vegetative cell shape OMP:0007708 An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:das abnormal vegetative cell shape FYPO:0002196 An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony. siegele 2017-12-19T16:38:38Z microbial_phenotype cone-shaped n OMP:0007709 more convex colony OMP:0007709 An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony. OMP:das An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation. siegele 2017-12-19T16:56:43Z microbial_phenotype OMP:0007710 conjugation without glucose starvation OMP:0007710 An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation. FYPO:0001864 OMP:das An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation. siegele 2017-12-19T16:59:49Z microbial_phenotype OMP:0007711 conjugation without nitrogen starvation OMP:0007711 An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation. FYPO:0003031 OMP:das An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control. siegele 2017-12-19T17:04:41Z microbial_phenotype OMP:0007712 branching of vegetative cell OMP:0007712 An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control. FYPO:0000015 OMP:das An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control. siegele 2017-12-19T17:36:21Z microbial_phenotype OMP:0007713 altered vegetative cell size OMP:0007713 An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control. OMP:das An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line. siegele 2017-12-19T17:39:34Z microbial_phenotype OMP:0007714 curving vegetative cell OMP:0007714 An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line. FYPO:0000016 OMP:das An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. siegele 2017-12-19T17:49:16Z abnormal vegetative cell morphology microbial_phenotype OMP:0007715 altered vegetative cell morphology OMP:0007715 An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control. FYPO:0001315 OMP:das abnormal vegetative cell morphology FYPO:0001118 A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions. siegele 2017-12-19T17:54:52Z viable vegetative cell microbial_phenotype OMP:0007716 viable vegetative cell OMP:0007716 A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions. FYPO:0001491 OMP:das viable vegetative cell FYPO:0001491 An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control. siegele 2017-12-19T17:56:29Z microbial_phenotype OMP:0007717 Note that if you have done an experiment that assays the viability of a population of microbial cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (OMP:xx) or one of its descendants. decreased viability of vegetative microbial cell OMP:0007717 An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control. OMP:das An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished. siegele 2017-12-19T17:58:40Z microbial_phenotype OMP:0007718 abolished viability of vegetative microbial cell OMP:0007718 An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished. OMP:das An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control. siegele 2017-12-19T18:18:27Z microbial_phenotype OMP:0007719 decreased cell volume OMP:0007719 An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control. OMP:das An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. siegele 2017-12-19T18:19:35Z small vegetative cell microbial_phenotype OMP:0007720 decreased vegetative cell volume OMP:0007720 An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:das small vegetative cell FYPO:0000645 siegele 2017-12-20T16:40:08Z microbial_phenotype OMP:0007721 increased cell volume OMP:0007721 An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. siegele 2017-12-20T16:41:30Z microbial_phenotype OMP:0007722 increased vegetative cell diameter OMP:0007722 An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. OMP:das An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. siegele 2017-12-20T16:46:25Z microbial_phenotype OMP:0007723 decreased vegetative cell length OMP:0007723 An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control. OMP:das A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control. siegele 2017-12-20T16:59:28Z microbial_phenotype OMP:0007724 altered vegetative cell viability OMP:0007724 A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control. OMP:das A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified. siegele 2017-12-20T16:59:57Z microbial_phenotype OMP:0007725 nonviable after spore germination OMP:0007725 A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified. FYPO:0000316 OMP:das An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate. siegele 2017-12-20T17:07:55Z inviable spore microbial_phenotype OMP:0007726 abolished spore viability OMP:0007726 An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate. FYPO:0002151 OMP:das inviable spore FYPO:0002151 An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control. siegele 2017-12-20T17:25:04Z microbial_phenotype OMP:0007727 tapering vegetative cell OMP:0007727 An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control. OMP:das A cellular process phenotype in which the rate, frequency, or occurrence of progression of a cell through a mitotic cell cycle is altered relative to a designated control. siegele 2017-12-20T17:40:46Z abnormal mitotic cell cycle microbial_phenotype OMP:0007728 altered mitotic cell cycle OMP:0007728 abnormal mitotic cell cycle FYPO:0000059 An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. siegele 2017-12-20T23:46:00Z microbial_phenotype OMP:0007729 altered vegetative cell population viability OMP:0007729 An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:das An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control. siegele 2017-12-20T23:47:24Z microbial_phenotype OMP:0007730 decreased vegetative cell population viability OMP:0007730 An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control. OMP:das An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished. siegele 2017-12-20T23:48:30Z inviable vegetative cell population microbial_phenotype OMP:0007731 abolished vegetative cell population viability OMP:0007731 An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished. OMP:das inviable vegetative cell population FYPO:0002061 A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time. siegele 2017-12-21T00:00:58Z microbial_phenotype OMP:0007732 septation index phenotype OMP:0007732 A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time. FYPO:0001903 OMP:das siegele 2017-12-21T00:03:57Z microbial_phenotype OMP:0007733 presence of a septation index OMP:0007733 A septation index phenotype where the septation index is altered relative to a designated control. siegele 2017-12-21T00:04:30Z microbial_phenotype OMP:0007734 altered septation index OMP:0007734 A septation index phenotype where the septation index is altered relative to a designated control. OMP:das An altered septation index phenotype in which the septation index is lower than a designated control. siegele 2017-12-21T00:05:56Z reduced septation index decreased septation index microbial_phenotype OMP:0007735 A septation index of zero indicates cell cycle arrest. decreased septation index OMP:0007735 An altered septation index phenotype in which the septation index is lower than a designated control. OMP:das decreased septation index FYPO:0001128 An altered septation index phenotype where the septation index is increased relative to a designated control. siegele 2017-12-21T00:08:19Z microbial_phenotype OMP:0007736 increased septation index OMP:0007736 An altered septation index phenotype where the septation index is increased relative to a designated control. FYPO:0000650 OMP:das An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical. siegele 2017-12-21T13:33:02Z irregular colony morphology microbial_phenotype OMP:0007737 more irregular colony margin OMP:0007737 An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical. FYPO:0001404 OMP:das irregular colony morphology FYPO:0001404 A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination. siegele 2017-12-21T13:50:25Z microbial_phenotype OMP:0007738 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. germ tube morphology phenotype OMP:0007738 A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination. BTO:0004822 GO::0032179 OMP:das A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control. siegele 2017-12-21T13:52:14Z microbial_phenotype OMP:0007739 altered germ tube morphology OMP:0007739 A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control. GO:0032179 OMP:das An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control. siegele 2017-12-21T13:56:59Z microbial_phenotype OMP:0007740 elongated germ tube morphology OMP:0007740 An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control. OMP:das A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost. siegele 2018-01-01T13:57:14Z microbial_phenotype OMP:0007741 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. vegetative cell lysis phenotype OMP:0007741 A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost. FYPO:0000647 OMP:das A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs. siegele 2018-01-01T14:02:32Z microbial_phenotype OMP:0007742 presence of vegetative cell lysis OMP:0007742 A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs. OMP:das A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur. siegele 2018-01-01T14:02:32Z microbial_phenotype OMP:0007743 absence of vegetative cell lysis OMP:0007743 A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur. OMP:das A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. siegele 2018-01-01T14:02:32Z microbial_phenotype OMP:0007744 altered vegetative cell lysis OMP:0007744 A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control. OMP:das A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle. siegele 2018-01-01T14:15:57Z microbial_phenotype OMP:0007745 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. vegetative cell phenotype OMP:0007745 A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle. FYPO:0001320 OMP:das A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control. siegele 2018-01-01T14:16:46Z abnormal vegetative cell phenotype microbial_phenotype OMP:0007746 altered vegetative cell phenotype OMP:0007746 A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control. OMP:das abnormal vegetative cell phenotype FYPO:FYPO:0003755 An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control. siegele 2018-01-10T16:46:28Z abnormal actin cytoskeleton morphology during vegetative cell growth microbial_phenotype OMP:0007747 altered actin cytoskeleton morphology during vegetative growth OMP:0007747 An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control. OMP:das abnormal actin cytoskeleton morphology during vegetative cell growth FYPO:0000350 A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle. siegele 2018-01-10T17:26:54Z microbial_phenotype OMP:0007748 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cellular physical quality phenotype during vegetative growth OMP:0007748 A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle. FYPO:0001321 OMP:das A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control. siegele 2018-01-10T17:32:50Z microbial_phenotype OMP:0007749 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered cellular physical quality phenotype during vegetative growth OMP:0007749 A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control. OMP:das A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part. siegele 2018-01-10T17:44:33Z microbial_phenotype OMP:0007750 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. subcellular component phenotype OMP:0007750 A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part. OMP:das A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control. siegele 2018-01-10T17:46:52Z abnormal subcellular component microbial_phenotype OMP:0007751 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. altered subcellular component phenotype OMP:0007751 A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control. OMP:das abnormal subcellular component FYPO:0007751 A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control. siegele 2018-01-10T17:50:16Z abnormal cytoskeleton microbial_phenotype OMP:0007752 altered cytoskeleton OMP:0007752 A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control. OMP:das abnormal cytoskeleton FYPO:0002397 A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. siegele 2018-01-10T17:57:03Z abnormal actin cytoskeleton microbial_phenotype OMP:0007753 altered actin cytoskeleton OMP:0007753 A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:das abnormal actin cytoskeleton FYPO:0005665 A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell. siegele 2018-01-10T18:39:44Z microbial_phenotype OMP:0007754 cytoskeleton phenotype OMP:0007754 A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell. OMP:das A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. siegele 2018-01-10T18:48:38Z abnormal actin cytoskeleton during vegetative growth microbial_phenotype OMP:0007755 altered actin cytoskeleton during vegetative growth OMP:0007755 A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:das abnormal actin cytoskeleton during vegetative growth FYPO:0002398 An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control. siegele 2018-01-20T00:04:25Z microbial_phenotype OMP:0007756 stubby vegetative cell OMP:0007756 An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control. FYPO:0000024 OMP:das An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells. siegele 2018-01-20T00:23:41Z more spherical vegetative cell spheroid vegetative cell microbial_phenotype OMP:0007757 more rounded vegetative cell OMP:0007757 An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells. OMP:das spheroid vegetative cell FYPO:0000021 A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell. siegele 2018-02-24T23:27:37Z microbial_phenotype OMP:0007758 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. actin cytoskeleton phenotype OMP:0007758 A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell. OMP:das A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell. siegele 2018-02-24T23:27:37Z microbial_phenotype OMP:0007759 microtubule cytoskeleton phenotype OMP:0007759 A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell. OMP:das An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. siegele 2018-02-24T23:35:18Z abnormal actin cytoskeleton microbial_phenotype OMP:0007760 altered actin cytoskeleton OMP:0007760 An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control. OMP:das abnormal actin cytoskeleton FYPO:0005665 A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control. siegele 2018-02-24T23:37:57Z abnormal microtubule cytoskeleton microbial_phenotype OMP:0007761 altered microtubule cytoskeleton OMP:0007761 A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control. OMP:das abnormal microtubule cytoskeleton FYPO:0002399 A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton. siegele 2018-02-24T23:40:45Z microbial_phenotype OMP:0007762 presence of microtubule cytoskeleton OMP:0007762 A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton. OMP:das A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton. siegele 2018-02-24T23:40:45Z microbial_phenotype OMP:0007763 absence of microtubule cytoskeleton OMP:0007763 A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton. OMP:das A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control. siegele 2018-02-24T23:40:45Z microbial_phenotype OMP:0007764 altered microtubule cytoskeleton morphology OMP:0007764 A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control. OMP:das A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control. siegele 2018-02-24T23:59:02Z abnormal actin cortical patch localization microbial_phenotype OMP:0007765 altered actin cortical patch localization OMP:0007765 A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control. OMP:das abnormal actin cortical patch localization FYPO:0000190 A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle. siegele 2018-03-13T00:37:46Z microbial_phenotype OMP:0007766 subcellular component phenotype during vegetative growth OMP:0007766 A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle. FYPO:0001313 OMP:das A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control. siegele 2018-03-13T00:41:59Z abnormal subcellular component during vegetative growth microbial_phenotype OMP:0007767 altered subcellular component phenotype during vegetative growth OMP:0007767 A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control. OMP:das abnormal subcellular component during vegetative growth FYPO:0001322 A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control. siegele 2018-03-13T00:45:10Z abnormal septum during vegetative growth microbial_phenotype OMP:0007768 altered septum during vegetative growth OMP:0007768 A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control. OMP:das abnormal septum during vegetative growth FYPO:0002455 A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control. siegele 2018-03-13T00:45:27Z abnormal septum morphology during vegetative growth microbial_phenotype OMP:0007769 altered septum morphology during vegetative growth OMP:0007769 A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control. OMP:das abnormal septum morphology during vegetative growth FYPO:0002023 An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell. siegele 2018-03-13T01:01:28Z multiseptate vegetative cell microbial_phenotype OMP:0007770 multiseptate vegetative cell OMP:0007770 An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell. FYPO:0000118 OMP:das multiseptate vegetative cell FYPO:0000118 A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). siegele 2018-04-28T15:51:32Z microbial_phenotype OMP:0007771 presence of population growth at alkaline pH OMP:0007771 A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). OMP:das A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control. siegele 2018-04-07T23:03:53Z microbial_phenotype OMP:0007772 altered vegetative population growth OMP:0007772 A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control. OMP:das A population growth phenotype where a microbial population is able to grow on a defined medium. siegele 2018-04-28T16:17:10Z microbial_phenotype OMP:0007773 presence of population growth on defined medium OMP:0007773 A population growth phenotype where a microbial population is able to grow on a defined medium. OMP:DAS A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium. siegele 2018-04-28T16:19:32Z microbial_phenotype OMP:0007774 population growth on defined medium phenotype OMP:0007774 A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium. OMP:das A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control. siegele 2018-04-28T16:20:12Z microbial_phenotype OMP:0007775 altered population growth on defined medium OMP:0007775 A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control. OMP:das An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control. siegele 2018-04-28T16:22:29Z microbial_phenotype OMP:0007776 decreased population growth on defined medium OMP:0007776 An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control. OMP:das An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished. siegele 2018-04-28T16:23:22Z microbial_phenotype OMP:0007777 abolished population growth on defined medium OMP:0007777 An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished. OMP:das A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control. siegele 2018-04-28T16:23:56Z microbial_phenotype OMP:0007778 increased population growth on defined medium OMP:0007778 A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control. OMP:das A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium. siegele 2018-04-28T16:25:49Z microbial_phenotype OMP:0007779 absence of population growth on defined medium OMP:0007779 A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium. OMP:das A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions. siegele 2018-06-08T17:22:34Z microbial_phenotype OMP:0007780 absence of microbial vegetative cell viability OMP:0007780 A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions. FYPO:0001489 OMP:das A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells. siegele 2018-06-08T17:31:26Z septation following abnormal mitotic chromosome segregation microbial_phenotype OMP:0007781 septation following abnormal chromosome segregation during vegetative growth OMP:0007781 A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells. FYPO:0000323 OMP:das septation following abnormal mitotic chromosome segregation FYPO:0000323 A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells. siegele 2018-06-08T17:41:11Z cut microbial_phenotype OMP:0007782 cut cell OMP:0007782 A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells. FYPO:0003165 OMP:das cut FYPO:0003165 A phenotype that affects a cellular process in the vegetative phase of the life cycle. siegele 2018-06-09T19:27:13Z cellular process phenotype during vegetative growth microbial_phenotype OMP:0007783 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cellular process phenotype during vegetative growth OMP:0007783 A phenotype that affects a cellular process in the vegetative phase of the life cycle. FYPO:0001331 OMP:das cellular process phenotype during vegetative growth FYPO:0001331 A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control. siegele 2018-06-09T19:29:28Z abnormal cellular process during vegetative growth microbial_phenotype OMP:0007784 altered cellular process during vegetative growth OMP:0007784 A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control. OMP:das abnormal cellular process during vegetative growth FYPO:0001362 siegele 2018-06-09T19:29:58Z microbial_phenotype OMP:0007785 presence of cellular process during vegetative growth OMP:0007785 A microbial phenotype where a microbe does not carry out the specified cellular process. siegele 2018-06-09T19:30:25Z microbial_phenotype OMP:0007786 absence of cellular process during vegetative growth OMP:0007786 A microbial phenotype where a microbe does not carry out the specified cellular process. OMP:das siegele 2018-06-09T19:32:40Z microbial_phenotype OMP:0007787 presence of cell separation after cell division during vegetative growth OMP:0007787 A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control. siegele 2018-06-09T19:33:12Z abnormal cell separation after cytokinesis microbial_phenotype OMP:0007788 altered cell separation after cell division during vegetative growth OMP:0007788 A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control. OMP:das abnormal cell separation after cytokinesis FYPO:0000164 A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished. siegele 2018-06-09T19:52:36Z microbial_phenotype abolished cell separation after cytokinesis OMP:0007789 abolished cell separation after cell division during vegetative growth OMP:0007789 A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished. FYPO:0006557 OMP:das abolished cell separation after cytokinesis FYPO:0006557 A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells. siegele 2018-06-09T20:00:05Z microbial_phenotype OMP:0007790 decreased frequency of cell separation after cell division during vegetative growth OMP:0007790 A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells. OMP:das A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends. siegele 2018-06-10T01:59:18Z dispersed actin cortical patch localization microbial_phenotype OMP:0007791 dispersed actin cortical patch localization OMP:0007791 A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends. FYPO:0002021 OMP:das dispersed actin cortical patch localization FYPO:0002021 A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division. siegele 2018-06-10T02:08:44Z microbial_phenotype OMP:0007792 absence of cell separation after cell division during vegetative growth OMP:0007792 A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division. OMP:das A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number. siegele 2018-06-10T21:18:22Z microbial_phenotype OMP:0007793 presence of vegetative cell population growth OMP:0007793 A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number. OMP:das A cell population phenotype that affects the rate or extent of growth of a population of microbial cells. siegele 2018-06-10T23:16:48Z microbial_phenotype cell population growth phenotype OMP:0007794 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. cell population growth phenotype OMP:0007794 A cell population phenotype that affects the rate or extent of growth of a population of microbial cells. FYPO:0000139 OMP:das cell population growth phenotype FYPO:0000139 A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle. siegele 2018-06-11T00:02:40Z microbial_phenotype vegetative cell population growth phenotype OMP:0007795 vegetative cell population growth phenotype OMP:0007795 A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle. FYPO:0000139 OMP:das vegetative cell population growth phenotype FYPO:0000139 siegele 2018-06-12T00:51:39Z microbial_phenotype OMP:0007796 presence of vegetative cell population growth OMP:0007796 siegele 2018-06-12T00:51:39Z microbial_phenotype OMP:0007797 absence of vegetative cell population growth OMP:0007797 siegele 2018-06-12T00:51:39Z microbial_phenotype OMP:0007798 altered vegetative cell population growth OMP:0007798 A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control. siegele 2018-06-12T00:51:53Z decreased vegetative cell population growth at high temperature microbial_phenotype OMP:0007799 decreased vegetative cell population growth at high temperature OMP:0007799 A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control. FYPO:0000082 OMP:das decreased vegetative cell population growth at high temperature FYPO:0000082 OMP:0000274 siegele 2018-06-18T03:07:12Z microbial_phenotype OMP:0007800 This term and its children were deemed to be too granular. Instead, use one of the children of OMP:0000274 antimicrobial agent resistance phenotype and enter database identifier for A22 in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent polyether antimicrobial resistance phenotype true OMP:0007800 dsiegele 2018-06-19T15:14:26Z microbial_phenotype OMP:0007801 altered vegetative cell population growth rate OMP:0007801 dsiegele 2018-06-19T15:15:58Z microbial_phenotype OMP:0007802 increased vegetative cell population growth rate OMP:0007802 dsiegele 2018-06-19T15:15:58Z microbial_phenotype OMP:0007803 decreased vegetative cell population growth rate OMP:0007803 An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control. dsiegele 2018-06-19T15:45:43Z microbial_phenotype OMP:0007804 increased vegetative cell population viability OMP:0007804 An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control. OMP:das An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control. dsiegele 2018-06-19T15:46:20Z microbial_phenotype OMP:0007805 increased cell population viability upon starvation OMP:0007805 An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control. OMP:das An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control. dsiegele 2018-06-19T15:48:36Z increased viability upon nitrogen starvation microbial_phenotype OMP:0007806 increased cell population viability upon nitrogen starvation OMP:0007806 An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control. FYPO:0004344 OMP:das increased viability upon nitrogen starvation FYPO:0004344 dsiegele 2018-06-19T15:53:27Z microbial_phenotype OMP:0007807 decreased cell population viablity upon starvation OMP:0007807 An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control. dsiegele 2018-06-19T15:53:53Z loss of viability upon nitrogen starvation microbial_phenotype OMP:0007808 decreased cell population viability upon nitrogen starvation OMP:0007808 An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control. OMP:das loss of viability upon nitrogen starvation FYPO:1178 A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control. dsiegele 2018-06-19T16:14:57Z microbial_phenotype OMP:0007809 altered cell population growth OMP:0007809 A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control. OMP:das dsiegele 2018-06-19T16:39:59Z microbial_phenotype OMP:0007810 cell population growth rate phenotype OMP:0007810 A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell. dsiegele 2018-06-20T14:50:41Z cellular pigment accumulation phenotype microbial_phenotype OMP:0007811 cellular pigment accumulation phenotype OMP:0007811 A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell. OMP:das cellular pigment accumulation phenotype FYPO:0000739 A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism. dsiegele 2018-06-20T14:55:08Z normal cellular pigment accumulation microbial_phenotype OMP:0007812 presence of cellular pigment accumulation OMP:0007812 A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism. OMP:das normal cellular pigment accumulation FYPO:0000740 A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment. dsiegele 2018-06-20T14:58:28Z normal cellular pigment accumulation microbial_phenotype OMP:0007813 presence of cellular pigment accumulation during vegetative growth OMP:0007813 A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment. OMP:das normal cellular pigment accumulation FYPO:0000740 A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control. dsiegele 2018-06-20T15:08:52Z microbial_phenotype OMP:0007814 altered cellular pigment accumulation OMP:0007814 A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control. OMP:das An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. dsiegele 2018-06-20T15:11:51Z microbial_phenotype OMP:0007815 increased cellular pigment accumulation OMP:0007815 An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. OMP:das An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. dsiegele 2018-06-20T15:15:14Z increased cellular pigment accumulation microbial_phenotype OMP:0007816 increased cellular pigment accumulation OMP:0007816 An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control. OMP:das increased cellular pigment accumulation FYPO:0000741 An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. dsiegele 2018-06-20T15:20:02Z microbial_phenotype OMP:0007817 decreased cellular pigment accumulation OMP:0007817 An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. OMP:das An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. dsiegele 2018-06-20T15:20:42Z microbial_phenotype OMP:0007818 decreased cellular pigment accumulation during vegetative growth OMP:0007818 An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control. OMP:das A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism. dsiegele 2018-06-20T15:29:44Z microbial_phenotype OMP:0007819 absence of cellular pigment accumulation OMP:0007819 A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism. OMP:das A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism. dsiegele 2018-06-20T15:31:24Z microbial_phenotype OMP:0007820 absence of cellular pigment accumulation during vegetative growth OMP:0007820 A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism. OMP:das An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group. siegele 2018-06-21T22:05:44Z nitrofuran sensitivity phenotype difurazone (Nitrovin) resistance phenotype nitrofurantoin resistance phenotype nitrofurazone resistance phenotype microbial_phenotype OMP:0007821 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. nitrofuran resistance phenotype OMP:0007821 An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group. CHEBI:87230 OMP:das nitrofurantoin resistance phenotype CHEBI:71415 nitrofurazone resistance phenotype CHEBI:44368 A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds. siegele 2018-06-21T22:07:43Z microbial_phenotype OMP:0007822 resistant to nitrofuran OMP:0007822 A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds. OMP:das A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds. siegele 2018-06-21T22:07:43Z microbial_phenotype OMP:0007823 not resistant to nitrofuran OMP:0007823 A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds. OMP:das A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control. siegele 2018-06-21T22:07:43Z microbial_phenotype OMP:0007824 altered nitrofuran resistance OMP:0007824 A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control. OMP:das An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control. siegele 2018-06-21T22:14:44Z increased sensitivity to nitrofuran microbial_phenotype OMP:0007825 decreased resistance to nitrofuran OMP:0007825 An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control. OMP:das An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished. siegele 2018-06-21T22:15:06Z microbial_phenotype OMP:0007826 abolished resistance to nitrofuran OMP:0007826 An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished. OMP:das An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control. siegele 2018-06-21T22:15:28Z decreased sensitivity to nitrofuran microbial_phenotype OMP:0007827 increased resistance to nitrofuran OMP:0007827 An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control. OMP:das An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group. siegele 2018-06-22T00:39:30Z sulfonamide sensitivity phenotype sulfamethizole resistance phenotype sulfamonomethoxine resistance phenotype microbial_phenotype OMP:0007828 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. sulfonamide antimicrobial agent resistance phenotype OMP:0007828 An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group. CHEBI:35358 OMP:das sulfamethizole resistance phenotype CHEBI:9331 sulfamonomethoxine resistance phenotype CHEBI:32164 A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent. siegele 2018-06-22T00:47:21Z microbial_phenotype OMP:0007829 resistant to sulfonamide antimicrobial agent OMP:0007829 A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent. OMP:das A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent. siegele 2018-06-22T00:47:21Z microbial_phenotype OMP:0007830 not resistant to a sulfonamide antimicrobial agent OMP:0007830 A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent. OMP:das A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control. siegele 2018-06-22T00:47:21Z microbial_phenotype OMP:0007831 altered resistance to a sulfonamide antimicrobial agent OMP:0007831 A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control. OMP:das An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control. siegele 2018-06-22T00:47:21Z decreased sensitivity to sulfonamide antimicrobial agent microbial_phenotype OMP:0007832 increased resistance to sulfonamide OMP:0007832 An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control. OMP:das An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control. siegele 2018-06-22T00:47:21Z increased sensitivity to sulfonamide microbial_phenotype OMP:0007833 decreased resistance to sulfonamde OMP:0007833 An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control. OMP:das A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished. siegele 2018-06-22T00:47:21Z microbial_phenotype OMP:0007834 abolished resistance to sulfonamide OMP:0007834 A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished. OMP:das A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions. siegele 2018-06-25T10:35:25Z microbial_phenotype OMP:0007835 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. spore viability phenotype OMP:0007835 A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions. OMP:das A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions. siegele 2018-06-25T10:37:49Z microbial_phenotype OMP:0007836 viable spore OMP:0007836 A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions. OMP:das A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate. siegele 2018-06-25T10:39:27Z microbial_phenotype OMP:0007837 nonviable spore OMP:0007837 A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate. FYPO:0002151 OMP:das A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control. siegele 2018-06-25T16:17:02Z microbial_phenotype OMP:0007838 altered spore viability OMP:0007838 A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control. OMP:das An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control. siegele 2018-06-25T16:18:49Z microbial_phenotype OMP:0007839 decreased spore viability OMP:0007839 An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control. OMP:das An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control. siegele 2018-06-25T16:18:49Z microbial_phenotype OMP:0007840 increased spore viability OMP:0007840 An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control. OMP:das An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control. siegele 2018-06-25T17:18:58Z microbial_phenotype OMP:0007841 increased viability of vegetative microbial cell OMP:0007841 An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control. OMP:das A cell morphology phenotype where a germinating microbial spore has a germ tube. siegele 2018-06-27T00:14:46Z microbial_phenotype OMP:0007842 presence of germ tube OMP:0007842 A cell morphology phenotype where a germinating microbial spore has a germ tube. OMP:das A cell morphology phenotype where a germinating microbial spore lacks a germ tube. siegele 2018-06-27T00:14:46Z microbial_phenotype OMP:0007843 absence of germ tube OMP:0007843 A cell morphology phenotype where a germinating microbial spore lacks a germ tube. OMP:das An altered germ tube morphology phenotype where the germ tube is curved along its long axis. siegele 2018-06-27T00:27:16Z microbial_phenotype OMP:0007844 curved germ tube morphology OMP:0007844 An altered germ tube morphology phenotype where the germ tube is curved along its long axis. OMP:das An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell. siegele 2018-06-27T20:58:20Z microbial_phenotype OMP:0007845 unseptated germ tube OMP:0007845 An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell. FYPO:0000311 OMP:das An antimicrobial agent resistance phenotype siegele 2018-06-30T21:27:43Z microbial_phenotype OMP:0007846 organic cyclic antimicrobial agent resistance phenotype OMP:0007846 An antimicrobial agent resistance phenotype CHEBI:33832 OMP:das An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin. siegele 2018-07-24T19:34:05Z fosfomycin resistance phenotype fosfomycin sensitivity phenotype microbial_phenotype OMP:0007847 fosfomycin resistance phenotype OMP:0007847 An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin. CHEBI:26069 OMP:das fosfomycin resistance phenotype CHEBI:28915 A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. siegele 2018-07-26T17:28:29Z epigallocatechin gallate (EGCG) chemical resistance phenotype phenol red chemical resistance phenotype rose bengal chemical resistance phenotype microbial_phenotype OMP:0007848 phenolic chemical resistance phenotype OMP:0007848 A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring. CHEBI:33853 OMP:das epigallocatechin gallate (EGCG) chemical resistance phenotype CHEBI::4806 phenol red chemical resistance phenotype CHEBI:31991 rose bengal chemical resistance phenotype CHEBI:52261 dsiegele 2018-07-27T16:15:15Z microbial_phenotype OMP:0007849 absence of organic carbon source utilization OMP:0007849 dsiegele 2018-07-27T16:15:15Z microbial_phenotype OMP:0007850 absence of inorganic carbon source utilization OMP:0007850 A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth. dsiegele 2018-07-27T16:29:26Z mixotrophy microbial_phenotype OMP:0007851 mixotrophic energy metabolism OMP:0007851 A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth. OMP:das An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control. dsiegele 2018-07-27T16:33:19Z microbial_phenotype OMP:0007852 increased inorganic carbon source utilization OMP:0007852 An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control. OMP:das An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control. dsiegele 2018-07-27T16:33:19Z microbial_phenotype OMP:0007853 decreased inorganic carbon source utilization OMP:0007853 An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control. OMP:das A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished. dsiegele 2018-07-27T16:33:19Z microbial_phenotype OMP:0007854 abolished inorganic carbon source utilization OMP:0007854 A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished. OMP:das An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin. dsiegele 2018-07-27T17:59:33Z microbial_phenotype OMP:0007855 fosmidomycin antimicrobial agent resistance phenotype OMP:0007855 An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin. CHEBI:443725 OMP:das An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin. dsiegele 2018-07-27T18:05:19Z microbial_phenotype OMP:0007856 presence of fosfomycin resistance OMP:0007856 An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin. OMP:das An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin. dsiegele 2018-07-27T18:05:19Z microbial_phenotype OMP:0007857 absence of fosfomycin resistance OMP:0007857 An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin. OMP:das A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control. dsiegele 2018-07-27T18:05:19Z microbial_phenotype OMP:0007858 altered fosfomycin resistance OMP:0007858 A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control. OMP:das An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control. dsiegele 2018-07-27T18:05:19Z microbial_phenotype OMP:0007859 increased resistance to fosfomycin OMP:0007859 An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control. OMP:das An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control. dsiegele 2018-07-27T18:05:19Z microbial_phenotype OMP:0007860 decreased resistance to fosfomycin OMP:0007860 An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control. OMP:das A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished. dsiegele 2018-07-27T18:05:19Z microbial_phenotype OMP:0007861 abolished fosfomycin resistance OMP:0007861 A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished. OMP:das OMP:0000274 siegele 2018-07-29T21:34:15Z microbial_phenotype OMP:0007862 The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent bicyclomycin antimicrobial agent resistance phenotype true OMP:0007862 OMP:0007876 siegele 2018-07-29T21:34:15Z microbial_phenotype OMP:0007863 presence of resistance to bicyclomycin true OMP:0007863 OMP:0007877 siegele 2018-07-29T21:34:15Z microbial_phenotype OMP:0007864 absence of resistance to bicyclomycin true OMP:0007864 OMP:0007134 siegele 2018-07-29T21:34:15Z microbial_phenotype OMP:0007865 altered resistance to bicyclomycin true OMP:0007865 OMP:0007879 siegele 2018-07-29T21:34:15Z microbial_phenotype OMP:0007866 decreased resistance to bicyclomycin true OMP:0007866 OMP:0007880 siegele 2018-07-29T21:34:15Z microbial_phenotype OMP:0007867 The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. abolished resistance to bicyclomycin true OMP:0007867 OMP:0007878 siegele 2018-07-29T21:34:15Z microbial_phenotype OMP:0007868 increased resistance to bicyclomycin true OMP:0007868 OMP:0000274 siegele 2018-07-29T22:21:01Z microbial_phenotype amino[sulfanyl]methaniminiumchloride antimicrobial agent resistance phenotype OMP:0007869 The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent A22 antimicrobial agent resistance phenotype true OMP:0007869 OMP:0007876 siegele 2018-07-29T22:22:16Z microbial_phenotype OMP:0007870 This term and was deemed to be too granular. In its place, use OMP:0007876 resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. presence of resistance to A22 true OMP:0007870 OMP:0007877 siegele 2018-07-29T22:22:16Z microbial_phenotype OMP:0007871 This term was deemed to be too granular. In its place, use OMP:0007877 not resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. absence of resistance to A22 true OMP:0007871 OMP:0007878 siegele 2018-07-29T22:22:16Z microbial_phenotype OMP:0007872 This term and was deemed to be too granular. Instead, use OMP:0007878 increased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. increased resistance to A22 true OMP:0007872 OMP:0007879 siegele 2018-07-29T22:22:16Z microbial_phenotype OMP:0007873 This term and was deemed to be too granular. In its place, use OMP:000 7879 decreased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. decreased resistance to A22 true OMP:0007873 OMP:0007880 siegele 2018-07-29T22:22:16Z microbial_phenotype OMP:0007874 The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. abolished resistance to A22 true OMP:0007874 OMP:0007134 siegele 2018-07-29T22:22:16Z microbial_phenotype OMP:0007875 This term and was deemed to be too granular. In its place, use OMP:0007134 altered resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field. altered resistance to A22 true OMP:0007875 An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field. dsiegele 2018-08-17T17:22:51Z not sensitive to an antimicrobial agent microbial_phenotype OMP:0007876 resistant to an antimicrobial agent OMP:0007876 An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field. OMP:das An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field. dsiegele 2018-08-17T17:25:08Z sensitive to an antimicrobial agent microbial_phenotype OMP:0007877 not resistant to an antimicrobial agent OMP:0007877 An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field. OMP:das An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control. dsiegele 2018-08-17T17:26:30Z microbial_phenotype OMP:0007878 increased resistance to an antimicrobial agent OMP:0007878 An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control. OMP:das An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control. dsiegele 2018-08-17T17:26:30Z microbial_phenotype OMP:0007879 decreased resistance to an antimicrobial agent OMP:0007879 An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control. OMP:das A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished. dsiegele 2018-08-17T17:26:45Z microbial_phenotype OMP:0007880 abolished resistance to an antimicrobial agent OMP:0007880 A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished. OMP:das An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host. dsiegele 2018-08-17T18:21:52Z host defense peptides sensitivity phenotype cecropin resistance phenotype defensin resistance phenotype microbial_phenotype OMP:0007881 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. host defense peptides resistance phenotype OMP:0007881 An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host. OMP:das A decreased resistance to host defense peptide phenotype where resistance is abolished. dsiegele 2018-08-17T18:31:14Z microbial_phenotype OMP:0007882 abolished resistance to host defense peptides OMP:0007882 A decreased resistance to host defense peptide phenotype where resistance is abolished. OMP:das A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished. dsiegele 2018-08-17T19:14:42Z microbial_phenotype OMP:0007883 abolished chemical resistance OMP:0007883 A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished. OMP:das A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal. dsiegele 2018-08-22T15:48:22Z microbial_phenotype OMP:0007884 resistant to a metal OMP:0007884 A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal. OMP:das A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal. dsiegele 2018-08-22T15:53:56Z sensitive to a metal microbial_phenotype OMP:0007885 not resistant to a metal OMP:0007885 A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal. OMP:das A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control. dsiegele 2018-08-22T15:54:29Z increased sensitivity to a metal microbial_phenotype OMP:0007886 decreased resistance to a metal OMP:0007886 A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control. OMP:das A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished. dsiegele 2018-08-22T15:54:56Z microbial_phenotype OMP:0007887 abolished resistance to a metal OMP:0007887 A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished. OMP:das A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control. dsiegele 2018-08-22T15:55:19Z decreased sensitivity to a metal microbial_phenotype OMP:0007888 increased resistance to a metal OMP:0007888 A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control. OMP:das A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control. dsiegele 2018-08-22T15:56:07Z altered sensitivity to a metal microbial_phenotype OMP:0007889 altered resistance to a metal OMP:0007889 A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control. OMP:das A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal. siegele 2018-08-22T18:04:54Z metal sensitivity phenotype microbial_phenotype OMP:0007890 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. metal resistance phenotype OMP:0007890 A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal. CHEBI:33521 OMP:das A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces. siegele 2018-08-22T18:12:18Z benzalkonium chloride resistance phenotype detergent resistance phenotype microbial_phenotype OMP:0007891 surfactant resistance phenotype OMP:0007891 A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces. CHEBI:35195 OMP:das benzalkonium chloride resistance phenotype CHEBI:3020 A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant. siegele 2018-08-22T18:13:28Z not sensitive to a surfactant microbial_phenotype OMP:0007892 resistant to a surfactant OMP:0007892 A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant. OMP:das A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant. siegele 2018-08-22T18:13:28Z sensitive to a surfactant microbial_phenotype OMP:0007893 not resistant to a surfactant OMP:0007893 A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant. OMP:das A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control. siegele 2018-08-22T18:13:28Z microbial_phenotype OMP:0007894 altered resistance to a surfactant OMP:0007894 A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control. OMP:das An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control. siegele 2018-08-22T18:13:58Z decreased sensitivity to a surfactant microbial_phenotype OMP:0007895 increased resistance to a surfactant OMP:0007895 An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control. OMP:das An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control. siegele 2018-08-22T18:13:58Z increased sensitivity to a surfactant microbial_phenotype OMP:0007896 decreased resistance to a surfactant OMP:0007896 An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control. OMP:das A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished. siegele 2018-08-22T18:13:58Z microbial_phenotype OMP:0007897 abolished resistance to a surfactant OMP:0007897 A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished. OMP:das A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids. siegele 2018-08-23T15:36:18Z bile acid sensitivity phenotype bile salt resistance phenotype microbial_phenotype OMP:0007898 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. bile acids resistance phenotype OMP:0007898 A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids. CHEBI:138366 OMP:das A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids. siegele 2018-08-23T16:11:39Z microbial_phenotype OMP:0007899 resistant to bile acids OMP:0007899 A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids. OMP:das A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids. siegele 2018-08-23T16:11:39Z sensitive to bile acids microbial_phenotype OMP:0007900 not resistant to bile acids OMP:0007900 A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids. OMP:das A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control. siegele 2018-08-23T16:11:39Z altered sensitivity to bile acids microbial_phenotype OMP:0007901 altered resistance to bile acids OMP:0007901 A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control. OMP:das An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control. siegele 2018-08-23T16:11:39Z decreased sensitivity to bile acids microbial_phenotype OMP:0007902 increased resistance to bile acids OMP:0007902 An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control. OMP:das An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control. siegele 2018-08-23T16:11:39Z increased sensitivity to bile acids microbial_phenotype OMP:0007903 decreased resistance to bile acids OMP:0007903 An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control. OMP:das A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished. siegele 2018-08-23T16:11:39Z microbial_phenotype OMP:0007904 abolished resistance to bile acids OMP:0007904 A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished. OMP:das siegele 2018-08-24T12:33:54Z microbial_phenotype OMP:0007905 altered nitrogen source utilization OMP:0007905 siegele 2018-08-24T12:37:35Z microbial_phenotype OMP:0007906 altered organic nitrogen source utilization OMP:0007906 A biofilm formation phenotype where a microbe is capable of forming a biofilm. siegele 2018-08-26T19:22:17Z microbial_phenotype OMP:0007907 presence of biofilm formation OMP:0007907 A biofilm formation phenotype where a microbe is capable of forming a biofilm. OMP:das siegele 2018-08-24T16:59:36Z microbial_phenotype OMP:0007908 chelator resistance phenotype OMP:0007908 siegele 2018-08-24T17:00:53Z microbial_phenotype OMP:0007909 resistant to a chelator OMP:0007909 siegele 2018-08-24T17:00:53Z microbial_phenotype OMP:0007910 not resistant to a chelator OMP:0007910 siegele 2018-08-24T17:00:53Z microbial_phenotype OMP:0007911 altered resistance to a chelator OMP:0007911 siegele 2018-08-24T17:00:53Z microbial_phenotype OMP:0007912 decreased resistance to a chelator OMP:0007912 siegele 2018-08-24T17:00:53Z microbial_phenotype OMP:0007913 increased resistance to a chelator OMP:0007913 siegele 2018-08-24T17:01:28Z microbial_phenotype OMP:0007914 abolished resistance to a chelator OMP:0007914 A biofilm formation phenotype where a microbe is incapable of forming a biofilm. siegele 2018-08-26T19:22:17Z microbial_phenotype OMP:0007915 absence of biofilm formation OMP:0007915 A biofilm formation phenotype where a microbe is incapable of forming a biofilm. OMP:das An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. siegele 2018-09-05T14:59:12Z microbial_phenotype OMP:0007916 decreased vegetative cell diameter OMP:0007916 An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. OMP:das A cell population phenotype that describes the extent of cell size variability within a growing microbial cell population. siegele 2018-09-05T15:18:58Z microbial_phenotype OMP:0007917 cell size variability OMP:0007917 siegele 2018-09-05T15:21:39Z microbial_phenotype OMP:0007918 altered cell size variability within a cell population OMP:0007918 siegele 2018-09-05T15:58:51Z microbial_phenotype OMP:0007919 presence of cell population growth OMP:0007919 siegele 2018-09-05T15:59:26Z microbial_phenotype OMP:0007920 absence of cell population growth OMP:0007920 siegele 2018-09-05T16:06:50Z microbial_phenotype OMP:0007921 presence of cell size variability within a cell population OMP:0007921 siegele 2018-09-05T16:07:15Z microbial_phenotype OMP:0007922 absence of cell size variability within a cell population OMP:0007922 siegele 2018-09-05T16:08:39Z microbial_phenotype OMP:0007923 decreased cell size variability within a cell population OMP:0007923 siegele 2018-09-05T16:08:39Z microbial_phenotype OMP:0007924 increased cell size variability within a cell population OMP:0007924 siegele 2018-09-05T16:08:39Z microbial_phenotype OMP:0007925 abolished cell size variability within a cell population OMP:0007925 An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control. siegele 2018-09-05T16:39:27Z microbial_phenotype OMP:0007926 Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. increased anaerobic population growth OMP:0007926 An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control. OMP:das An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control. siegele 2018-09-05T16:39:27Z microbial_phenotype OMP:0007927 Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. decreased anaerobic population growth OMP:0007927 An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control. OMP:das Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group. siegele 2018-09-06T17:18:16Z microbial_phenotype OMP:0007928 commonly used descriptors OMP:0007928 Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group. OMP:das A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. siegele 2018-09-07T18:13:30Z microbial_phenotype OMP:0007929 Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. decreased microaerophilic population growth OMP:0007929 A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control. OMP:das An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control. siegele 2018-09-07T18:14:29Z microbial_phenotype OMP:0007930 Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments. increased microaerophilic population growth OMP:0007930 An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control. OMP:das A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control. siegele 2018-09-15T01:45:33Z microbial_phenotype OMP:0007931 altered population phenotype OMP:0007931 A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control. OMP:das A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient. siegele 2018-11-04T16:55:30Z microbial_phenotype OMP:0007932 resistance to nutrient limitation stress phenotype OMP:0007932 A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient. OMP:das A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient. siegele 2018-11-04T16:56:28Z microbial_phenotype OMP:0007933 presence of resistance to nutrient limitation OMP:0007933 A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient. OMP:das A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient. siegele 2018-11-04T16:56:28Z microbial_phenotype OMP:0007934 absence of resistance to nutrient limitation OMP:0007934 A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient. OMP:das A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control. siegele 2018-11-04T16:56:28Z microbial_phenotype OMP:0007935 altered resistance to nutrient limitation OMP:0007935 A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control. OMP:das siegele 2018-11-04T16:56:35Z microbial_phenotype OMP:0007936 increased resistance to nutrient limitation OMP:0007936 siegele 2018-11-04T16:56:58Z microbial_phenotype OMP:0007937 decreased resistance to nutrient limitation OMP:0007937 siegele 2018-11-04T16:57:25Z microbial_phenotype OMP:0007938 abolished resistance to nutrient limitation OMP:0007938 A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control. siegele 2019-02-01T15:05:44Z microbial_phenotype OMP:0007939 increased ploidy in a vegetative microbial cell OMP:0007939 A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control. OMP:das An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control. siegele 2019-02-01T15:11:39Z increased spontaneous diploidization microbial_phenotype OMP:0007940 increased spontaneous diploidization in a vegetative microbial cell OMP:0007940 An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control. FYPO:0000252 OMP:DAS increased spontaneous diploidization FYPO:0000252 siegele 2019-02-01T17:20:01Z microbial_phenotype OMP:0007941 altered viability after microbial spore germination OMP:0007941 dsiegele 2019-03-27T14:44:53Z microbial_phenotype OMP:0007942 increased survival in macrophage OMP:0007942 dsiegele 2019-03-27T14:45:12Z microbial_phenotype OMP:0007943 decreased survival in macrophage OMP:0007943 dsiegele 2019-03-27T14:45:29Z microbial_phenotype OMP:0007944 abolished survival in macrophage OMP:0007944 A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7). siegele 2019-09-12T00:41:29Z microbial_phenotype OMP:0007945 presence of population growth at acidic pH OMP:0007945 A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7). OMP:das A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7). siegele 2019-09-12T00:42:29Z microbial_phenotype OMP:0007946 absence of population growth at acidic pH OMP:0007946 A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7). OMP:das A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). siegele 2019-09-12T10:31:33Z microbial_phenotype OMP:0007947 This term was made obsolete because it was redundant with OMP:0007771. The two terms weren't merged because the redundancy of OMP:0007947 was discovered after one day and was never committed to a release. presence of growth at alkaline pH true OMP:0007947 A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7). OMP:das A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7). siegele 2019-09-12T10:44:32Z microbial_phenotype OMP:0007948 absence of growth at alkaline pH true OMP:0007948 A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7). OMP:das siegele 2019-09-13T00:12:25Z microbial_phenotype OMP:0007949 <new term> OMP:0007949 A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. siegele 2019-09-13T01:17:11Z microbial_phenotype OMP:0007950 presence of population growth at high temperature OMP:0007950 A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. OMP:das A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. siegele 2019-09-13T01:22:12Z microbial_phenotype OMP:0007951 absence of population growth at high temperature OMP:0007951 A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range. OMP:das A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control. siegele 2019-09-13T01:24:01Z microbial_phenotype OMP:0007952 altered population growth at high temperature OMP:0007952 A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control. OMP:das siegele 2019-09-13T01:25:33Z microbial_phenotype OMP:0007953 increased population growth at high temperature OMP:0007953 siegele 2019-09-13T01:25:52Z microbial_phenotype OMP:0007954 decreased population growth at high temperature OMP:0007954 siegele 2019-09-13T01:26:12Z microbial_phenotype OMP:0007955 abolished population growth at high temperature OMP:0007955 siegele 2019-09-13T01:41:59Z microbial_phenotype OMP:0007956 presence of population growth at low temperature OMP:0007956 siegele 2019-09-13T01:41:59Z microbial_phenotype OMP:0007957 absence of population growth at low temperature OMP:0007957 siegele 2019-09-13T01:41:59Z microbial_phenotype OMP:0007958 altered population growth at low temperature OMP:0007958 siegele 2019-09-13T01:41:59Z microbial_phenotype OMP:0007959 increased population growth at low temperature OMP:0007959 siegele 2019-09-13T01:41:59Z microbial_phenotype OMP:0007960 decreased population growth at low temperature OMP:0007960 siegele 2019-09-13T01:41:59Z microbial_phenotype OMP:0007961 abolished population growth at low temperature OMP:0007961 A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). siegele 2019-09-23T14:17:16Z normal cell population growth during glucose starvation normal cell population growth during iron starvation microbial_phenotype OMP:0007962 presence of cell population growth during nutrient limitation OMP:0007962 A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). OMP:das normal cell population growth during glucose starvation FYPO:0004765 normal cell population growth during iron starvation FYPO:0001814 A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration). siegele 2019-09-23T14:22:18Z microbial_phenotype OMP:0007963 absence of cell population growth during nutrient limitation OMP:0007963 A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration). OMP:das A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). siegele 2019-09-23T14:25:30Z microbial_phenotype OMP:0007964 cell population growth during nutrient limitation phenotype OMP:0007964 A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration). OMP:das A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control. siegele 2019-09-23T14:31:13Z microbial_phenotype OMP:0007965 altered cell population growth during nutrient limitation OMP:0007965 A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control. OMP:das An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control. siegele 2019-09-23T14:32:07Z increased cell population growth during glucose starvation increased vegetative cell population growth during phosphate starvation microbial_phenotype OMP:0007966 increased population growth during nutrient limitation OMP:0007966 An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control. OMP:das increased cell population growth during glucose starvation FYPO:0003938 increased vegetative cell population growth during phosphate starvation FYPO:0004967 An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control. siegele 2019-09-23T14:33:15Z decreased cell population growth during glucose starvation decreased cell population growth during nitrogen starvation decreased vegetative cell population growth during phosphate starvation microbial_phenotype OMP:0007967 decreased cell population growth during nutrient limitation OMP:0007967 An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control. OMP:das decreased cell population growth during glucose starvation FYPO:0003743 decreased cell population growth during nitrogen starvation FYPO:0000709 decreased vegetative cell population growth during phosphate starvation FYPO:0004968 A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished. siegele 2019-09-23T14:34:07Z abolished cell population growth during glucose starvation microbial_phenotype OMP:0007968 abolished population growth during nutrient limitation OMP:0007968 A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished. OMP:das abolished cell population growth during glucose starvation FYPO:0004837 siegele 2019-11-17T15:43:44Z microbial_phenotype OMP:0007969 presence of organic nitrogen source utilization OMP:0007969 siegele 2019-11-17T15:43:44Z microbial_phenotype OMP:0007970 absence of organic nitrogen source utilization OMP:0007970 An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK). siegele 2020-05-08T13:13:10Z microbial_phenotype OMP:0007971 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Tolerance applies only to microbiocidal antimicrobial agents and not to microbiostatic agents. This is in contrast to resistance which applies to both microbiocidal and microbiostatic agents. tolerance to an antimicrobial agent phenotype OMP:0007971 An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK). DOI:10.1038/nrmicro.2016.34 OMP:das PMID:27080241 An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control. siegele 2020-05-08T13:17:08Z microbial_phenotype OMP:0007972 altered tolerance to an antimicrobial agent phenotype OMP:0007972 An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control. OMP:das An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control. siegele 2020-05-08T13:17:08Z microbial_phenotype OMP:0007973 increased tolerance to an antimicrobial agent OMP:0007973 An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control. OMP:das An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control. siegele 2020-05-08T13:17:08Z microbial_phenotype OMP:0007974 decreased tolerance to an antimicrobial agent OMP:0007974 An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control. OMP:das siegele 2020-07-22T19:20:08Z microbial_phenotype OMP:0007975 altered cell length OMP:0007975 siegele 2020-07-22T19:21:08Z microbial_phenotype OMP:0007976 altered cell length variability OMP:0007976 siegele 2020-07-22T19:22:09Z microbial_phenotype OMP:0007977 altered cell diameter OMP:0007977 siegele 2020-07-22T19:22:31Z microbial_phenotype OMP:0007978 altered cell diameter variability OMP:0007978 siegele 2020-07-22T19:24:06Z microbial_phenotype OMP:0007979 increased cell length variability OMP:0007979 siegele 2020-07-22T19:24:06Z microbial_phenotype OMP:0007980 decreased cell length variability OMP:0007980 siegele 2020-07-22T19:36:15Z microbial_phenotype OMP:0007981 decreased cell diameter variability OMP:0007981 siegele 2020-07-22T19:36:15Z microbial_phenotype OMP:0007982 increased cell diameter variability OMP:0007982 siegele 2020-07-22T20:21:33Z microbial_phenotype OMP:0007983 altered cell area OMP:0007983 siegele 2020-07-22T20:22:13Z microbial_phenotype OMP:0007984 altered cell area variability OMP:0007984 siegele 2020-07-22T20:23:00Z microbial_phenotype OMP:0007985 decreased cell area OMP:0007985 siegele 2020-07-22T20:23:00Z microbial_phenotype OMP:0007986 increased cell area OMP:0007986 siegele 2020-07-22T20:23:10Z microbial_phenotype OMP:0007987 decreased cell area variability OMP:0007987 siegele 2020-07-22T20:23:34Z microbial_phenotype OMP:0007988 increased cell area variability OMP:0007988 siegele 2020-07-22T20:25:24Z microbial_phenotype OMP:0007989 altered cell volume OMP:0007989 siegele 2020-07-22T20:26:40Z microbial_phenotype OMP:0007990 altered cell volume variability OMP:0007990 siegele 2020-07-22T20:27:50Z microbial_phenotype OMP:0007991 decreased cell volume variability OMP:0007991 siegele 2020-07-22T20:27:50Z microbial_phenotype OMP:0007992 increased cell volume variability OMP:0007992 siegele 2020-07-22T20:28:53Z microbial_phenotype OMP:0007993 altered cell surface area OMP:0007993 siegele 2020-07-22T20:29:49Z microbial_phenotype OMP:0007994 decreased cell surface area OMP:0007994 siegele 2020-07-22T20:29:49Z microbial_phenotype OMP:0007995 increased cell surface area OMP:0007995 siegele 2020-07-22T20:29:49Z microbial_phenotype OMP:0007996 altered cell surface area variability OMP:0007996 siegele 2020-07-22T20:31:33Z microbial_phenotype OMP:0007997 decreased cell surface area variability OMP:0007997 siegele 2020-07-22T20:31:33Z microbial_phenotype OMP:0007998 increased cell surface area variability OMP:0007998 siegele 2020-07-22T20:32:47Z microbial_phenotype OMP:0007999 altered cell surface area-to-volume ratio OMP:0007999 A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe. kanderson 2015-06-03T13:12:00Z FAO:0000019 microbial_phenotype OMP:0008000 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. spore morphology phenotype OMP:0008000 A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe. OMP:KDA FAO:0000019 spore An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination. kanderson 2015-06-08T12:07:41Z microbial_phenotype OMP:0008001 endospore germ cell wall phenotype OMP:0008001 An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination. OMP:KDA PMID:3101583 An endospore germ cell wall phenotype where an endospore lacks a germ cell wall. kanderson 2015-06-08T12:10:22Z microbial_phenotype OMP:0008002 absence of an endospore germ cell wall OMP:0008002 An endospore germ cell wall phenotype where an endospore lacks a germ cell wall. OMP:KDA An endospore germ cell wall phenotype where an endospore has a germ cell wall. kanderson 2015-06-08T12:10:22Z microbial_phenotype OMP:0008003 presence of an endospore germ cell wall OMP:0008003 An endospore germ cell wall phenotype where an endospore has a germ cell wall. OMP:KDA An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid. kanderson 2015-06-08T12:14:34Z microbial_phenotype OMP:0008004 endospore core phenotype OMP:0008004 An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid. ISBN:9780073402406 OMP:KDA An endospore core phenotype where an endospore lacks a central core. kanderson 2015-06-08T12:16:08Z microbial_phenotype OMP:0008005 absence of the endospore core OMP:0008005 An endospore core phenotype where an endospore lacks a central core. OMP:KDA An endospore core phenotype where the central core is present in an endospore. kanderson 2015-06-08T12:16:08Z microbial_phenotype OMP:0008006 presence of a core OMP:0008006 An endospore core phenotype where the central core is present in an endospore. OMP:KDA An endospore external encapsulating structure phenotype related to the endospore coat, which is on the exterior of all spores and is composed of many structural proteins that confer additional resistance. kanderson 2015-06-08T12:18:25Z microbial_phenotype OMP:0008007 endospore coat phenotype OMP:0008007 An endospore external encapsulating structure phenotype related to the endospore coat, which is on the exterior of all spores and is composed of many structural proteins that confer additional resistance. OMP:KDA PMID:3101583 An endospore coat phenotype where an endospore lacks a coat layer. kanderson 2015-06-08T12:19:49Z microbial_phenotype OMP:0008008 absence of an endospore coat OMP:0008008 An endospore coat phenotype where an endospore lacks a coat layer. OMP:KDA An endospore coat phenotype where an endospore has a coat layer. kanderson 2015-06-08T12:19:49Z microbial_phenotype OMP:0008009 presence of an endospore coat OMP:0008009 An endospore coat phenotype where an endospore has a coat layer. OMP:KDA An endospore external encapsulating structure phenotype related to the outer endospore membrane, a phospholipid bilayer, derived from the mother cell, located between the endospore cortex and endospore coat. kanderson 2015-06-08T12:21:48Z GO:0043594 microbial_phenotype OMP:0008010 outer endospore membrane phenotype OMP:0008010 An endospore external encapsulating structure phenotype related to the outer endospore membrane, a phospholipid bilayer, derived from the mother cell, located between the endospore cortex and endospore coat. GO:0043594 OMP:KDA PMID:3101583 GO:0043594 outer endospore membrane An outer endospore membrane phenotype where an endospore lacks an outer membrane. kanderson 2015-06-08T12:23:37Z microbial_phenotype OMP:0008011 absence of an outer endospore membrane OMP:0008011 An outer endospore membrane phenotype where an endospore lacks an outer membrane. OMP:KDA An outer endospore membrane phenotype where an endospore has an outer membrane. kanderson 2015-06-08T12:23:37Z microbial_phenotype OMP:0008012 presence of an outer endospore membrane OMP:0008012 An outer endospore membrane phenotype where an endospore has an outer membrane. OMP:KDA An endospore morphology phenotype that relates to the inner membrane or core of an endospore. kanderson 2015-06-08T12:43:22Z microbial_phenotype OMP:0008013 endospore internal structure phenotype OMP:0008013 An endospore morphology phenotype that relates to the inner membrane or core of an endospore. OMP:KDA An endospore internal structure phenotype related to the inner membrane, which surrounds the core. kanderson 2015-06-08T12:45:57Z microbial_phenotype OMP:0008014 inner endospore membrane phenotype OMP:0008014 An endospore internal structure phenotype related to the inner membrane, which surrounds the core. OMP:KDA PMID:3101583 An inner endospore membrane phenotype where an endospore lacks an inner membrane. kanderson 2015-06-08T12:50:07Z microbial_phenotype OMP:0008015 absence of an inner endospore membrane OMP:0008015 An inner endospore membrane phenotype where an endospore lacks an inner membrane. OMP:KDA An inner endospore membrane phenotype where the endospore has an inner membrane. kanderson 2015-06-08T12:50:07Z microbial_phenotype OMP:0008016 presence of an inner endospore membrane OMP:0008016 An inner endospore membrane phenotype where the endospore has an inner membrane. OMP:KDA An interrupted endospore formation phenotype where sporulation is stopped before any visible morphological changes have occurred, and the cell or cells have the appearance of vegetative cells. kanderson 2015-06-08T13:04:15Z microbial_phenotype OMP:0008017 In many bacteria, the first visible morphological change in sporulation is formation of an asymmetric septum that separates the mother cell and forespore compartments. endospore formation stopped at stage 0 OMP:0008017 An interrupted endospore formation phenotype where sporulation is stopped before any visible morphological changes have occurred, and the cell or cells have the appearance of vegetative cells. OMP:KDA PMID:3101583 An altered endospore formation phenotype where development of the endospore is interrupted before the process is complete. kanderson 2015-06-08T13:06:18Z microbial_phenotype OMP:0008018 interrupted endospore formation OMP:0008018 An altered endospore formation phenotype where development of the endospore is interrupted before the process is complete. OMP:KDA An interrupted endospore formation phenotype where sporulation is stopped after formation of the septum, but before engulfment of the forespore by the mother cell. kanderson 2015-06-08T13:07:39Z microbial_phenotype OMP:0008019 endospore formation stopped at stage II OMP:0008019 An interrupted endospore formation phenotype where sporulation is stopped after formation of the septum, but before engulfment of the forespore by the mother cell. OMP:KDA PMID:3101583 An interrupted endospore formation phenotype where sporulation is stopped after engulfment but before production of the endospore cortex and coat. kanderson 2015-06-08T13:08:51Z microbial_phenotype OMP:0008020 endospore formation stopped at stage III OMP:0008020 An interrupted endospore formation phenotype where sporulation is stopped after engulfment but before production of the endospore cortex and coat. OMP:KDA PMID:3101583 An interrupted endospore formation phenotype where sporulation is stopped after deposition of the cortex and germ cell wall, but before formation of the endospore coat. kanderson 2015-06-08T13:09:45Z microbial_phenotype OMP:0008021 endospore formation stopped at stage IV OMP:0008021 An interrupted endospore formation phenotype where sporulation is stopped after deposition of the cortex and germ cell wall, but before formation of the endospore coat. OMP:KDA PMID:3101583 An interrupted endospore formation phenotype where sporulation is stopped after formation of the coat, but before the endospore has developed its characteristic resistance properties. kanderson 2015-06-08T13:10:24Z microbial_phenotype OMP:0008022 endospore formation stopped at stage V OMP:0008022 An interrupted endospore formation phenotype where sporulation is stopped after formation of the coat, but before the endospore has developed its characteristic resistance properties. OMP:KDA PMID:3101583 An interrupted endospore formation phenotype where endospore formation and maturation is complete, but before lysis of the mother cell. kanderson 2015-06-08T13:11:05Z microbial_phenotype OMP:0008023 endospore formation stopped at stage VI OMP:0008023 An interrupted endospore formation phenotype where endospore formation and maturation is complete, but before lysis of the mother cell. OMP:KDA PMID:3101583 An endospore external encapsulating structure phenotype that relates to the endospore cortex, a layer surrounding an endospore that lies between the outer and inner endospore membranes and consists of peptidoglycan which is typically less cross-linked than that found in vegetable cell walls. kanderson 2015-06-08T13:20:48Z GO:0043595 microbial_phenotype OMP:0008024 endospore cortex phenotype OMP:0008024 An endospore external encapsulating structure phenotype that relates to the endospore cortex, a layer surrounding an endospore that lies between the outer and inner endospore membranes and consists of peptidoglycan which is typically less cross-linked than that found in vegetable cell walls. GO:0043595 OMP:KDA GO:0043595 endospore cortex An endospore cortex phenotype where an endospore lacks a cortex. kanderson 2015-06-08T13:22:06Z microbial_phenotype OMP:0008025 absence of an endospore cortex OMP:0008025 An endospore cortex phenotype where an endospore lacks a cortex. OMP:KDA An endospore cortex phenotype where an endospore has a cortex. kanderson 2015-06-08T13:22:06Z microbial_phenotype OMP:0008026 presence of a cortex OMP:0008026 An endospore cortex phenotype where an endospore has a cortex. OMP:KDA An endospore coat phenotype where the endospore coat is altered relative to a designated control. kanderson 2015-06-08T13:24:49Z microbial_phenotype OMP:0008027 altered endospore coat OMP:0008027 An endospore coat phenotype where the endospore coat is altered relative to a designated control. OMP:KDA A genetic material phenotype relating to the ability of microbes to serve as a donor of recipient in the transfer of genetic material. Tianyizhou 2017-10-23T14:35:30Z microbial_phenotype OMP:0008028 This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. genetic transfer phenotype OMP:0008028 An endospore cortex phenotype where the endospore cortex is altered relative to a designated control. kanderson 2015-06-08T13:30:48Z microbial_phenotype OMP:0008029 altered endospore cortex OMP:0008029 An endospore cortex phenotype where the endospore cortex is altered relative to a designated control. OMP:KDA An endospore germ cell wall phenotype where the germ cell wall is altered relative to a designated control. kanderson 2015-06-08T13:31:51Z microbial_phenotype OMP:0008030 altered endospore germ cell wall OMP:0008030 An endospore germ cell wall phenotype where the germ cell wall is altered relative to a designated control. OMP:KDA An endospore exosporium phenotype where the exposporium is altered relative to a designated control. kanderson 2015-06-08T13:32:47Z microbial_phenotype OMP:0008031 altered exosporium OMP:0008031 An endospore exosporium phenotype where the exposporium is altered relative to a designated control. OMP:KDA An outer endospore membrane phenotype where the outer membrane is altered relative to a designated control. kanderson 2015-06-08T13:33:31Z microbial_phenotype OMP:0008032 altered outer membrane OMP:0008032 An outer endospore membrane phenotype where the outer membrane is altered relative to a designated control. OMP:KDA An endospore core phenotype where the core is altered relative to a designated control. kanderson 2015-06-08T13:34:26Z microbial_phenotype OMP:0008033 altered core OMP:0008033 An endospore core phenotype where the core is altered relative to a designated control. OMP:KDA An inner endospore membrane phenotype where the inner membrane is altered relative to a designated control. kanderson 2015-06-08T13:35:10Z microbial_phenotype OMP:0008034 altered inner endospore membrane OMP:0008034 An inner endospore membrane phenotype where the inner membrane is altered relative to a designated control. OMP:KDA A genetic transfer phenotype related to the ability of microbes to take up extracellular DNA from the environment under natural conditions. Tianyizhou 2017-10-23T14:46:29Z microbial_phenotype OMP:0008035 natural competence phenotype OMP:0008035 A genetic transfer phenotype related to the ability of microbes to take up extracellular DNA from the environment under natural conditions. GO: OMP:tz A natural competence phenotype where a microbe lacks the ability to be transformed by taking up extracellular DNA from the environment. Tianyizhou 2017-10-23T14:52:25Z microbial_phenotype OMP:0008036 absence of natural competence OMP:0008036 A natural competence phenotype where a microbe lacks the ability to be transformed by taking up extracellular DNA from the environment. OMP:tz A natural competence phenotype where the rate, frequency, timing, or extent of natural competence is altered relative to a designated control. Tianyizhou 2017-10-23T14:52:29Z microbial_phenotype OMP:0008037 altered natural competence OMP:0008037 A natural competence phenotype where the rate, frequency, timing, or extent of natural competence is altered relative to a designated control. OMP:TZ A natural competence phenotype where a microbe has the ability to be transformed by taking up extracellular DNA from the environment. Tianyizhou 2017-10-23T14:52:33Z microbial_phenotype OMP:0008038 presence of natural competence OMP:0008038 A natural competence phenotype where a microbe has the ability to be transformed by taking up extracellular DNA from the environment. OMP:tz An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is decreased relative to a designated control. Tianyizhou 2017-10-23T15:15:23Z microbial_phenotype OMP:0008039 decreased natural competence OMP:0008039 An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is decreased relative to a designated control. OMP:TZ An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is increased relative to a designated control. Tianyizhou 2017-10-23T15:15:35Z microbial_phenotype OMP:0008040 increased natural competence OMP:0008040 An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is increased relative to a designated control. OMP:TZ A decreased natural competence phenotype where the ability to be transformed by taking up extracellular DNA is abolished. Tianyizhou 2017-10-23T17:55:59Z microbial_phenotype OMP:0008041 abolished natural competence OMP:0008041 A decreased natural competence phenotype where the ability to be transformed by taking up extracellular DNA is abolished. OMP:TZ A bacteriophage plaque morphology phenotype that describe the appearance, size of viral plaques. Tianyizhou 2017-12-12T17:17:11Z microbial_phenotype OMP:0008043 plaque morphology phenotype true OMP:0008043 A bacteriophage plaque morphology phenotype that describe the appearance, size of viral plaques. OMP:TZ A bacteriophage plaque morphology phenotype that describe the size of viral plaques. Tianyizhou 2017-12-12T17:33:04Z microbial_phenotype OMP:0008044 plaque size phenotype true OMP:0008044 A bacteriophage plaque morphology phenotype that describe the size of viral plaques. OMP:TZ A bacteriophage plaque morphology phenotype where the appearance, size of viral plaque is altered relative to a designated control. Tianyizhou 2017-12-12T17:36:55Z microbial_phenotype OMP:0008045 altered plaque morphology phenotype true OMP:0008045 A bacteriophage plaque morphology phenotype where the appearance, size of viral plaque is altered relative to a designated control. OMP:TZ A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control. Tianyizhou 2017-12-12T17:39:30Z microbial_phenotype OMP:0008046 altered plaque size phenotype true OMP:0008046 A bacteriophage plaque morphology phenotype that describe the appearance of viral plaques. Tianyizhou 2017-12-12T17:41:00Z microbial_phenotype OMP:0008047 plaque appearance phenotype true OMP:0008047 A bacteriophage plaque morphology phenotype where the appearance and the size of the plaque is altered to a designated control. Tianyizhou 2017-12-12T17:59:53Z microbial_phenotype OMP:0008048 altered plaque morphology phenotype OMP:0008048 A bacteriophage plaque morphology phenotype where the appearance and the size of the plaque is altered to a designated control. OMP:TZ A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control. Tianyizhou 2017-12-12T18:02:15Z microbial_phenotype OMP:0008049 altered plaque size phenotype OMP:0008049 A bacteriophage plaque morphology phenotype where the size of viral plaque is altered relative to a designated control. OMP:TZ A bacteriophage plaque morphology phenotype that describe the size of viral plaques. Tianyizhou 2017-12-12T18:35:39Z microbial_phenotype OMP:0008050 plaque size phenotype true OMP:0008050 A bacteriophage plaque morphology phenotype where the appearance of viral plaque is altered relative to a designated control. Tianyizhou 2017-12-12T18:37:06Z microbial_phenotype OMP:0008051 altered plaque appearance OMP:0008051 An altered bacteriophage plaque morphology phenotype where the appearance of a viral plaque is more turbid than a designated control. Tianyizhou 2017-12-12T18:38:28Z microbial_phenotype OMP:0008052 more turbid plaque appearance OMP:0008052 An altered bacteriophage plaque morphology phenotype where the appearance of a viral plaque is more turbid than a designated control. OMP:tz An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque is clearer relative to a designated control. Tianyizhou 2017-12-12T18:39:01Z microbial_phenotype OMP:0008053 clearer plaque appearance OMP:0008053 A bacteriophage plaque morphology phenotype where the size of viral plaque is increased relative to a designated control. Tianyizhou 2017-12-12T18:40:37Z microbial_phenotype OMP:0008054 increased plaque size phenotype OMP:0008054 A bacteriophage plaque morphology phenotype where the size of viral plaque is decreased relative to a designated control. Tianyizhou 2017-12-12T18:41:48Z microbial_phenotype OMP:0008055 decreased plaque size phenotype OMP:0008055 A bacteriophage plaque morphology phenotype where the bacteria shows a certain size and appearance of the plaque. Tianyizhou 2018-02-16T16:16:46Z microbial_phenotype OMP:0008057 plaque morphology phenotype OMP:0008057 A bacteriophage plaque morphology phenotype where bacteria shows an appearance of the viral plaque. Tianyizhou 2018-02-16T16:21:31Z microbial_phenotype OMP:0008058 plaque appearance phenotype OMP:0008058 A bacteriophage plaque morphology phenotype where bacteria shows an size of the viral plaque. Tianyizhou 2018-02-16T16:24:07Z microbial_phenotype OMP:0008059 plaque size phenotype OMP:0008059 A bacteriophage plaque morphology phenotype where the viral plaque has a turbid appearance. Tianyizhou 2018-02-16T16:26:00Z microbial_phenotype OMP:0008060 turbid plaque appearance OMP:0008060 A bacteriophage plaque morphology phenotype where the viral plaque has a turbid appearance. OMP:tz A bacteriophage plaque morphology phenotype where the viral plaque appears to be clear. Tianyizhou 2018-02-16T16:26:05Z microbial_phenotype OMP:0008061 clear plaque appearance OMP:0008061 An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque has a high central density of surviving colonies and then a depletion region, followed by a high-colony-density region and then finally an apparently clear zone. Tianyizhou 2018-02-16T16:31:45Z microbial_phenotype OMP:0008062 bull's eye plaque appearance morphology true OMP:0008062 An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque edge becomes fuzzy relative to a designated control. Tianyizhou 2018-02-16T16:32:23Z microbial_phenotype OMP:0008063 Some mutant in phage T4 will cause the edge of the plaque become fuzzy. altered to fuzzy edge plaque appearance OMP:0008063 A bacteriophage plaque morphology phenotype where the appearance of viral plaque has a high central density of surviving colonies and then a depletion region, followed by a high-colony-density region and then finally an apparently clear zone. Tianyizhou 2018-02-16T17:34:00Z microbial_phenotype cocarde bacteriophage plaque phenotype hazy bacteriophage plaque morphology OMP:0008064 T7 will create bull's eye plaque on e.coli Hfr strain. bull's eye plaque appearance OMP:0008064 An altered bacteriophage plaque morphology phenotype where the appearance of viral plaque change from either clear or turbid to bull's eye. Tianyizhou 2018-02-16T17:48:35Z microbial_phenotype cocarde plaque morphology hazy plaque morphology OMP:0008065 altered to bull's eye plaque appearance OMP:0008065 A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities PATO:0000072 trait quality PATO:0000001 quality PATO:0000001 A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities PATOC:GVG A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. quality PATO:0000004 Should be defined using translocation. mobility PATO:0000004 A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. PATOC:GVG A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. concentration quality PATO:0000033 concentration of PATO:0000033 A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. Wikipedia:http://en.wikipedia.org/wiki/concentration A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. quality PATO:0000044 frequency PATO:0000044 A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. Wikipedia:http://en.wikipedia.org/wiki/frequency A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. quality PATO:0000051 morphology PATO:0000051 A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. PATOC:GVG A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). PATO:0001647 relational shape quality quality PATO:0000052 Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. shape PATO:0000052 A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). PATOC:GVG An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. quality nutritional quality PATO:0000056 trophic quality PATO:0000056 An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. Wikipedia:http://en.wikipedia.org/wiki/Trophic_level A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. PATO:0000156 PATO:0000158 temporal incidence quality PATO:0000057 occurrence PATO:0000057 A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. PATOC:GVG A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. PATO:0000132 PATO:0001565 distribution quality pattern PATO:0000060 spatial pattern PATO:0000060 A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. PATOC:GVG quality PATO:0000068 TODO: define this or obsolete it and move children somewhere else. qualitative PATO:0000068 A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. quality PATO:0000069 deviation(from_normal) PATO:0000069 A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. PATOC:GVG The number of entities of this type that are part of the whole organism. PATO:0000053 PATO:0000071 PATO:0001169 PATO:0001226 count presence or absence in organism quantitative quality count in organism number presence PATO:0000070 This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. amount PATO:0000070 The number of entities of this type that are part of the whole organism. PATOC:GVG A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. quality PATO:0000117 size PATO:0000117 A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. WordNet:WordNet A 1-D extent quality which is equal to the distance between two points. quality PATO:0000122 length PATO:0000122 A 1-D extent quality which is equal to the distance between two points. PATOC:GVG A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. PATO:0000137 angular placement quality amount of rotation angle angular magnitude plane angle PATO:0000133 orientation PATO:0000133 A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. PATOC:JE A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. PATO:0001032 PATO:0001631 location placement relational spatial quality quality PATO:0000140 position PATO:0000140 A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. PATOC:GVG A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. PATO:0001452 conformation relational structural quality quality PATO:0000141 structure PATO:0000141 A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. PATOC:GVG conformation VT:1000738 A physical quality of the thermal energy of a system. quality PATO:0000146 temperature PATO:0000146 A physical quality of the thermal energy of a system. PATOC:GVG A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. quality PATO:0000150 texture PATO:0000150 A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. PATOC:GVG A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. quality PATO:0000161 rate PATO:0000161 A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. PATOC:melissa An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. quality PATO:0000169 viability PATO:0000169 An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. PATOC:GVG A quality of a process which ends earlier than the natural end time or reference process. PATO:0001508 abolished quality incomplete PATO:0000297 TODO: the definition is incorrect. See absent. arrested PATO:0000297 A quality of a process which ends earlier than the natural end time or reference process. PATOC:LC A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. quality PATO:0000330 irregular spatial pattern PATO:0000330 A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. PATOC:GVG A branchiness quality inhering in a bearer by virtue of the bearer's having branches. ramified ramiform quality PATO:0000402 branched PATO:0000402 A branchiness quality inhering in a bearer by virtue of the bearer's having branches. WordNet:WordNet A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. bowing quality curled PATO:0000406 curved PATO:0000406 A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. WordNet:WordNet A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. quality round rounded PATO:0000411 circular PATO:0000411 A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. thefreedictionary.com:thefreedictionary.com A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. microbial_phenotype PATO:0000414 unbranched PATO:0000414 A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. PATOC:GVG A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. quality PATO:0000422 auxotrophic PATO:0000422 A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. microbial_phenotype PATO:0000423 prototrophic PATO:0000423 A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. Wikipedia:http://en.wikipedia.org/wiki/Prototrophic A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. microbial_phenotype PATO:0000440 regular spatial pattern PATO:0000440 A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. PATOC:GVG A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. quality aberrant atypia atypical defective PATO:0000460 abnormal PATO:0000460 A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. PATOC:GVG A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. quality average PATO:0000461 normal PATO:0000461 A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. PATOC:GVG A quality denoting the lack of an entity. PATO:0001996 absence absent from organism quality PATO:0000462 Example: [ E=wing Q=absent ] -applies to an organism that lacks wings. Note that this is the reciprocal quality to the relational quality "lacks all parts of type". This means that [E=wing Q=absent] is replaceable with [E=organism Q=lacks_all_parts_of_type E2=Wing]. The latter is preferable as it allows greater precision in stating what is lacking from where. E.g. We can say [E=spermatocyte Q=lacks_all_parts_of_type E2=aster] to describe spermatocytes that have no asters. absent PATO:0000462 A quality denoting the lack of an entity. thefreedictionary.:thefreedictionary. A quality inhering in a bearer by virtue of the bearer's existence. quality present in organism PATO:0000467 present PATO:0000467 A quality inhering in a bearer by virtue of the bearer's existence. PATOC:GVG A duration quality of a process which is relatively high. PATO:0000715 high time increased period increased time quality chronic prolonged period slow time PATO:0000498 increased duration PATO:0000498 A duration quality of a process which is relatively high. PATOC:GVG A duration quality of a process which is relatively low. PATO:0000716 decreased period decreased time low period shortened period quality fast time PATO:0000499 decreased duration PATO:0000499 A duration quality of a process which is relatively low. PATOC:GVG A quality of a process which starts later than the natural start time or the reference process. quality late PATO:0000502 delayed PATO:0000502 A quality of a process which starts later than the natural start time or the reference process. PATOC:LC A length quality which is relatively large. long quality PATO:0000573 increased length PATO:0000573 A length quality which is relatively large. PATOC:GVG A length quality which is relatively small. short quality shortened stubby PATO:0000574 decreased length PATO:0000574 A length quality which is relatively small. PATOC:GVG A size quality which is relatively high. PATO:0001202 quality big enlarged expanded great large PATO:0000586 increased size PATO:0000586 A size quality which is relatively high. PATOC:GVG A size quality which is relatively low. hypoplasia underdeveloped quality reduced small tiny PATO:0000587 decreased size PATO:0000587 A size quality which is relatively low. PATOC:GVG A thickness which is relatively high. high thickness stout thickened quality thick PATO:0000591 increased thickness PATO:0000591 A thickness which is relatively high. PATOC:GVG A thickness which is relatively low. low thickness quality slender thin PATO:0000592 decreased thickness PATO:0000592 A thickness which is relatively low. PATOC:GVG A volume which is relatively high. high volume quality large volume PATO:0000595 increased volume PATO:0000595 A volume which is relatively high. PATOC:GVG A volume which is relatively low. low volume quality small volume PATO:0000596 decreased volume PATO:0000596 A volume which is relatively low. PATOC:GVG A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. quality PATO:0000617 bent PATO:0000617 A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. PATOC:MAH A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. PATO:0000621 ectopic mislocalized quality PATO:0000628 mislocalised PATO:0000628 A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. PATOC:GVG A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. fused fused to quality coalesced joined with merged with PATO:0000642 fused with PATO:0000642 A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. PATOC:GVG A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. unfused microbial_phenotype PATO:0000651 unfused from PATO:0000651 A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. PATOC:nw A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. PATO:0000429 uninterrupted quality PATO:0000689 continuous PATO:0000689 A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. thefreedictionary.com:thefreedictionary.com A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. PATO:0000426 interrupted quality intermittent PATO:0000690 discontinuous PATO:0000690 A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. thefreedictionary.com:thefreedictionary.com A quality of a process which starts earlier than the natural start time or the reference process. PATO:0000691 PATO:0002086 advanced quality early precocious PATO:0000694 premature PATO:0000694 A quality of a process which starts earlier than the natural start time or the reference process. PATO:LC A texture quality inhering in a bearer by virtue of the bearer's irregular surface. PATO:0001616 coarse quality PATO:0000700 rough PATO:0000700 A texture quality inhering in a bearer by virtue of the bearer's irregular surface. PATOC:GVG A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. microbial_phenotype PATO:0000701 smooth PATO:0000701 A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. PATOC:GVG A viability quality inhering in a population by virtue of the bearer's long term survival inability. quality PATO:0000718 lethal (sensu genetics) PATO:0000718 A viability quality inhering in a population by virtue of the bearer's long term survival inability. PATOC:GVG A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. quality PATO:0000719 viable PATO:0000719 A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. PATOC:GVG A rate which is relatively low. slow rate quality PATO:0000911 decreased rate PATO:0000911 A rate which is relatively low. PATO:GVG A rate which is relatively high. fast rate high rate quality PATO:0000912 increased rate PATO:0000912 A rate which is relatively high. PATO:GVG A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. quality PATO:0000915 thickness PATO:0000915 A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. WordNet:WordNet A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. quality PATO:0000918 volume PATO:0000918 A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. PATOC:GVG A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. apiculate quality PATO:0000944 sharpness PATO:0000944 A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. PATOC:GVG A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. ellipse-shaped ellipsoid elliptical quality oval ovoid PATO:0000947 elliptic PATO:0000947 A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. PATOC:GVG A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). quality PATO:0000970 permeability PATO:0000970 A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). Biology-online:Biology-online A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). quality porous PATO:0000982 permeable PATO:0000982 A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). Biology-online:Biology-online A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion). microbial_phenotype PATO:0000983 impermeable PATO:0000983 A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion). Biology-online:Biology-online A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. PATO:0002079 Wikipedia:Physical_property relational physical quality quality PATO:0001018 physical quality PATO:0001018 A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. PATOC:GVG A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. quality PATO:0001159 concentrated PATO:0001159 A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. PATOC:GVG A concentration which is higher relative to the normal or average. high concentration quality PATO:0001162 increased concentration PATO:0001162 A concentration which is higher relative to the normal or average. PATOC:GVG A concentration which is lower relative to the normal or average. low concentration quality PATO:0001163 decreased concentration PATO:0001163 A concentration which is lower relative to the normal or average. PATOC:GVG A quality which inheres in an process. PATO:0001239 PATO:0001240 quality of a process quality of occurrent quality of process relational quality of occurrent quality PATO:0001236 See comments of relational quality of a physical entity. process quality PATO:0001236 A quality which inheres in an process. PATOC:GVG A quality which inheres in a continuant. PATO:0001237 PATO:0001238 snap:Quality monadic quality of a continuant multiply inhering quality of a physical entity quality of a continuant quality of a single physical entity quality of an object quality of continuant monadic quality of an object monadic quality of continuant quality PATO:0001241 Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. physical object quality PATO:0001241 A quality which inheres in a continuant. PATOC:GVG A temperature which is relatively high. PATO:0000678 high temperature hot quality PATO:0001305 increased temperature PATO:0001305 A temperature which is relatively high. PATOC:GVG A temperature which is relatively low. PATO:0000677 cold low temperature quality PATO:0001306 decreased temperature PATO:0001306 A temperature which is relatively low. PATOC:GVG A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. PATO:0000081 period quality time PATO:0001309 duration PATO:0001309 A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. PATOC:mellybelly A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. microbial_phenotype PATO:0001355 convex PATO:0001355 A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. PATOC:GVG A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. quality PATO:0001367 lobate PATO:0001367 A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. PATOC:GVG A monadic quality of continuant that exists at the cellular level of organisation. quality PATO:0001396 cellular quality PATO:0001396 A monadic quality of continuant that exists at the cellular level of organisation. PATOC:GVG A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. quality PATO:0001404 nucleate quality PATO:0001404 A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. PATOC:GVG A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. quality PATO:0001406 binucleate PATO:0001406 A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. Biology-online:Biology-online A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. quality PATO:0001407 mononucleate PATO:0001407 A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. Biology-online:Biology-online A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. quality PATO:0001419 sharp PATO:0001419 A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. PATOC:GVG A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. quality PATO:0001435 attachment quality PATO:0001435 A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. PATOC:GVG A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. quality PATO:0001442 wholeness PATO:0001442 A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. thefreedictionary.com:thefreedictionary.com A broken quality inhering in a bearer by virtue of the bearer's being broken open. PATO:0001443 PATO:0001820 burst fractured fragmented ruptured quality cracked hemorrhaged split torn PATO:0001444 broken PATO:0001444 A broken quality inhering in a bearer by virtue of the bearer's being broken open. PATOC:GVG An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. detached quality PATO:0001453 detached from PATO:0001453 An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. PATOC:GVG A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. sensitivity of occurrent quality PATO:0001457 sensitivity of a process PATO:0001457 A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. PATOC:GVG A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). PATO:0000408 globular quality rotund PATO:0001499 spherical PATO:0001499 A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). WordNet:WordNet A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. quality PATO:0001514 delaminated PATO:0001514 A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. PATOC:cjm A sensitivity of a process which is higher than normal or average. high sensitivity of occurrent increased sensitivity of occurrent quality PATO:0001551 increased sensitivity of a process PATO:0001551 A sensitivity of a process which is higher than normal or average. PATO:GVG A sensitivity of a process which is lower than normal or average. decreased sensitivity of occurrent low sensitivity of occurrent quality PATO:0001552 decreased sensitivity of a process PATO:0001552 A sensitivity of a process which is lower than normal or average. PATO:GVG The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. OBO_REL:has_part extra or missing physical or functional parts has or lacks parts of type mereological quality number of quality cardinality number PATO:0001555 has number of PATO:0001555 The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. PATOC:CJM A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. quality PATO:0001558 lacking processual parts PATO:0001558 A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. PATOC:GVG A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. having supernumerary processual parts quality PATO:0001561 having extra processual parts PATO:0001561 A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. PATOC:GVG A quality of a process inhering in a bearer by virtue of the bearer's processual parts. quality PATO:0001564 extra or missing processual parts PATO:0001564 A quality of a process inhering in a bearer by virtue of the bearer's processual parts. PATOC:GVG A permeability which is relatively high. high permeability quality PATO:0001577 increased permeability PATO:0001577 A permeability which is relatively high. PATO:GVG A permeability which is relatively low. low permeability microbial_phenotype PATO:0001578 decreased permeability PATO:0001578 A permeability which is relatively low. PATO:GVG A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. quality PATO:0001591 curvature PATO:0001591 A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. WordNet:WordNet A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. PATO:0001644 protruding relational protruding quality quality PATO:0001598 protruding PATO:0001598 A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. WordNet:WordNet A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. clumped clustered quality PATO:0001629 aggregated PATO:0001629 A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. WordNet:WordNet A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. quality PATO:0001630 dispersed PATO:0001630 A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. WordNet:WordNet A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. quality PATO:0001643 stubby PATO:0001643 A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. thefreedictionary.com:thefreedictionary.com A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. 1-D size quality PATO:0001708 1-D extent PATO:0001708 A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. PATOC:GVG A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. 3D size quality PATO:0001710 3-D extent PATO:0001710 A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. PATOC:GVG A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. clefted septate quality divided forked PATO:0001786 split PATO:0001786 A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. die.net:die.net A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. quality tightly curled twisted PATO:0001798 kinked PATO:0001798 A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. thefreedictionary.com:thefreedictionary.com A structural quality inhering in a bearer by virtue of the bearer's having no opening. microbial_phenotype PATO:0001821 imperforate PATO:0001821 A structural quality inhering in a bearer by virtue of the bearer's having no opening. thefreedictionary.com:thefreedictionary.com A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. quality PATO:0001846 tangled PATO:0001846 A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. answers.com:answers.com A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. PATO:0001837 stenosis stenotic stricture quality PATO:0001847 constricted PATO:0001847 A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. WordNet:WordNet A shape quality in a bearer by virtue of the bearer's curving inward. quality PATO:0001857 concave PATO:0001857 A shape quality in a bearer by virtue of the bearer's curving inward. WordNet:WordNet A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. PATO:0001864 quality sphericality PATO:0001865 spheroid PATO:0001865 A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. Wikipedia:http://en.wikipedia.org/wiki/Spheroid A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. S-shaped sigmoidal quality PATO:0001878 sigmoid PATO:0001878 A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. PATOC:CJM The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. having physical part quality PATO:0001905 has normal numbers of parts of type PATO:0001905 The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. PATOC:CJM A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. quality PATO:0001908 multinucleate PATO:0001908 A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. PATOC:GVG A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. quality PATO:0001925 This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. surface feature shape PATO:0001925 A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. PATOC:CJM A quality that inheres in an entire organism or part of an organism. quality PATO:0001995 organismal quality PATO:0001995 A quality that inheres in an entire organism or part of an organism. PATOC:CJM The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. loss of quality PATO:0001999 lacks parts or has fewer parts of type PATO:0001999 The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. PATOC:CJM A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. PATO:0001557 OBO_REL:lacks_part lacks all physical parts of type quality PATO:0002000 Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. lacks all parts of type PATO:0002000 A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. PATOC:CJM The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. PATO:0001569 decreased number of has decreased number of has fewer physical parts of type quality PATO:0002001 Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. has fewer parts of type PATO:0002001 The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. PATOC:CJM The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. PATO:0001560 has extra parts of has increased number of having extra physical parts having supernumerary physical parts increased number of quality PATO:0002002 In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q=<this> E2=finger. has extra parts of type PATO:0002002 The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. PATOC:CJM Surface shape that refers to the inward or outward curvature of the surface. quality PATO:0002005 concavity PATO:0002005 Surface shape that refers to the inward or outward curvature of the surface. PATOC:MAH A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. quality 2-D projection cross-sectional PATO:0002006 2-D shape PATO:0002006 A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. PATOC:CJM A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 Use this term or an is_a child of this term when the entire shape of the object is known. convex 3-D shape PATO:0002007 A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. PATOC:CJM A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 concave 3-D shape PATO:0002008 A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. PATOC:CJM A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. quality PATO:0002009 branchiness PATO:0002009 A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. PATOC:MAH A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. quality PATO:0002014 structure, cavities PATO:0002014 A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. PATOC:GVG An occurrence which is relatively high. George Gkoutos 2009-03-26T11:10:11Z increased incidence quality PATO:0002051 increased occurrence PATO:0002051 An occurrence which is relatively high. PATOC:GVG An occurrence which is relatively low. George Gkoutos 2009-03-26T11:12:35Z decreased incidence quality PATO:0002052 decreased occurrence PATO:0002052 An occurrence which is relatively low. PATOC:GVG george 2009-06-05T09:16:46Z quality PATO:0002062 physical quality of a process PATO:0002062 Having extra or fewer parts. George Gkoutos 2009-09-21T10:41:58Z quality PATO:0002083 altered number of PATO:0002083 Having extra or fewer parts. PATOC:GVG A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. george 2009-10-05T03:37:05Z PATO:0000649 quality permeable pierced PATO:0002112 perforate PATO:0002112 A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. answers.com:answers.com A positional quality inhering in a bearer by virtue the bearer's being changed in position. George Gkoutos 2010-03-01T02:56:33Z quality PATO:0002181 displaced PATO:0002181 A positional quality inhering in a bearer by virtue the bearer's being changed in position. PATOC:GVG A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. George Gkoutos 2010-03-10T03:18:15Z PATO:0002061 relational molecular quality quality PATO:0002182 molecular quality PATO:0002182 A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. PATOC:GVG A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. george 2010-07-08T01:47:09Z quality PATO:0002213 obclavate PATO:0002213 A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. PATOC:GVG A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. george 2010-07-23T02:31:11Z drop shaped quality PATO:0002240 teardrop-shaped PATO:0002240 A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. url:wordnetweb.princeton.edu/perl/webwn A shape quality inhering in a bearer by virtue of the bearer's having a point. george 2010-09-08T03:15:16Z quality PATO:0002258 pointed PATO:0002258 A shape quality inhering in a bearer by virtue of the bearer's having a point. PATOC:http://www.merriam-webster.com/dictionary/pointed A shape that inheres in a 3 dimensional entity. george 2010-10-05T12:31:16Z quality PATO:0002266 3-D shape PATO:0002266 A shape that inheres in a 3 dimensional entity. PATOC:OREGON A quality that has a value that is increased compared to normal or average. George Gkoutos 2011-06-16T06:39:43Z quality PATO:0002300 increased quality PATO:0002300 A quality that has a value that is increased compared to normal or average. PATOC:GVG A quality that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:40:15Z quality PATO:0002301 decreased quality PATO:0002301 A quality that has a value that is decreased compared to normal or average. PATOC:GVG A quality of a process that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:50:59Z quality PATO:0002302 decreased process quality PATO:0002302 A quality of a process that has a value that is decreased compared to normal or average. PATOC:GVG A quality of an object that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:51:54Z quality PATO:0002303 decreased object quality PATO:0002303 A quality of an object that has a value that is decreased compared to normal or average. PATOC:GVG A quality of a process that has a value that is increased compared to normal or average. George Gkoutos 2011-06-16T06:53:08Z quality PATO:0002304 increased process quality PATO:0002304 A quality of a process that has a value that is increased compared to normal or average. PATOC:GVG A quality of an object that has a value that is increased compared to normal or average. George Gkoutos 2011-06-16T06:54:01Z quality PATO:0002305 increased object quality PATO:0002305 A quality of an object that has a value that is increased compared to normal or average. PATOC:GVG A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt George Gkoutos 2011-10-12T12:45:16Z Lamé curve quality PATO:0002318 superelliptic PATO:0002318 A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt wiktionary:superellipse A temporal distribution pattern of process occurrences within a regulation/reference process. George Gkoutos 2011-11-22T01:12:28Z quality PATO:0002323 temporal distribution quality PATO:0002323 A temporal distribution pattern of process occurrences within a regulation/reference process. PATOC:LC The temporal relation between the end of the process with respect to a reference process. George Gkoutos 2011-11-23T11:46:00Z quality completeness extent PATO:0002324 offset quality PATO:0002324 The temporal relation between the end of the process with respect to a reference process. PATOC:LC completeness GOC:CJM extent GOC:CJM The temporal relation between the start of the process with respect to a reference process. George Gkoutos 2011-11-23T11:47:34Z quality initiation PATO:0002325 onset quality PATO:0002325 The temporal relation between the start of the process with respect to a reference process. PATOC:LC A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc gkoutos 2012-01-31T03:55:16Z quality PATO:0002345 lemon-shaped PATO:0002345 A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc PATOC:MH A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. gkoutos 2012-01-31T03:58:10Z quality PATO:0002346 snowman-shaped PATO:0002346 A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. PATOC:MH A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. gkoutos 2013-10-21T05:44:34Z quality PATO:0002505 nucleated PATO:0002505 A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. PATOC:GVG A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. wasila.dahdul 2014-09-25T15:11:47Z microbial_phenotype PATO:0005012 complete structure PATO:0005012 A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. PATOC:WD A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. wasila.dahdul 2014-09-25T15:12:35Z quality PATO:0005013 incomplete structure PATO:0005013 A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. PATOC:WD A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. quality PATO:0015019 C-shaped PATO:0015019 A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. github:mah11 https://github.com/pato-ontology/pato/issues/96 A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. quality PATO:0015020 J-shaped PATO:0015020 A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. github:mah11 https://github.com/pato-ontology/pato/issues/96 Inverse of part_of. Used in FYPO to link phenotypes that are collections of features to phenotypes representing the features. BFO:0000051 sequence has_part has_part Example: operon has_part gene. has_part Inverse of part_of. http://precedings.nature.com/documents/3495/version/1 Used in FYPO as described in PATO best practices; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps). RO:0000052 microbial_phenotype inheres_in inheres_in inheres_in RO:0002211 external regulates regulates regulates RO:0002212 external negatively_regulates negatively_regulates negatively regulates Relation binding a relational quality or disposition to the relevant type of entity. Used in FYPO as described in PATO best practices; identifies abolished GO processes; identifies substances affected by phenotypes. RO:0002503 quality towards towards Relation binding a relational quality or disposition to the relevant type of entity. towards OBO-Edit 2.3.1 13:04:2021 14:52 microbial_phenotype 1.2 siegele select is_a closure q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality decreased_in_magnitude_relative_to This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. decreased_in_magnitude_relative_to q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. PATOC:CJM s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. quality has_cross_section Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. has_cross_section s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. PATOC:CJM sequence has_quality The relationship between a feature and an attribute. has_quality q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. quality increased_in_magnitude_relative_to This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. increased_in_magnitude_relative_to q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. PATOC:CJM q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. quality reciprocal_of There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. reciprocal_of q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. PATOC:CJM