To answer the need for a workflow representing a sequence of data transformations, a high-level process ontology was defined, denoted Pipeline Patterns (PP) ontology (see Figure 2). The PP ontology represents high-level terms, that will later on be mapped onto the terms of the PEAO ontology, and the manner in which they can relate. Every concept is generically a Data (class from EDAM), which can be further specified as an Entry (P:00002) or an Exit (P:00009). All Entries can be subjected to an Operation (class from EDAM) producing an Intermediate (P:00010). An Intermediate has a TemporalEntity associated to represent its time of creation. Some Entries are specifically of the type Exit, meaning that they will represent concepts that exit the current category and be passed to the next one on the workflow. Additionally, in order to permit the treatment of a set of objects as a single entity, this high-level ontology considers the concept of List (P:00004) and more specifically an Aggregate (P:00005), containing a set of Data or Entry, respectively. The concept Intermediate is an Entry, allowing for the successive application of an operation to an Element. This is particularly useful in the case of the application of sequential set of operations. definition imported from contains obtainedFrom producedBy timeOfCreation fromExperimentalSubject hasAnatomicalFeature hasDevelopmentalState hasExperimentalCondition hasGrowthEnvironment hasLocation hasProgeny hasTaxonomy refersToSpot hasProteinModification refersToBand hasStructure isCloneOf producedByExpTreatment hasPlantTreatment hasStudyType hasPlantGrowthEnvironment obtainedFromBioSubject producedByExtractionProtocol producedByAnalysisProtocol obtainedFromPhysicalSubject extractedFromBioSubject producedByPhysSampleFractioning extractedFromMaterialEntity producedByDataAcquisitionProtocol hasProteolyticEnzyme hasMassSpecInstrument hasInstrumentModel hasIonizationType hasSoftware hasMassAnalyzerType hasInstrumentType hasAccessionID hasAnnotationDB hasArea hasCalculatedMR hasEValue hasExpectedMR hasFragmentMassTolerance hasGelSpotID hasImageAcquisitionEquipment hasImageAcquisitionMagnification hasIons hasMW hasMaxMissedCleavages hasMiscleavages hasObservedMR hasPI hasPPM hasPeptideMassTolerance FIXME hasPredictedPeptide The bit score of the BLAST match for a set of protein fragments against a protein database hasScore hasVolume hasXcoordinate hasYcoordinate hasRIN hasElectropherogramPlot hasImage hasUserDescription hasLength hasGelBandID observations gelAcrylamidePercent gelHeight gelWidth gelDepth gelVoltage gelpHStrip gelDye Generic address or precise GPS coordenates of a place or location place Data Operation that transforms one intermediate (possibly the point of entry) into another intermediate (possibly the point of exit) Operation oboOther:BFO_0000001 entity oboOther:BFO_0000002 An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. continuant oboOther:BFO_0000005 A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities. dependent continuant EO:0001001 cooperl 2013-04-10T13:21:11Z A plant experimental condition (EO:0007359) or set of conditions describing the application of an abiotic (EO:0007191) or biotic plant treatment (EO:0007357) or the combinatorial application thereof. plant treatment EO:0001003 cooperl 2013-04-10T13:58:52Z A chemical treatment (EO:0007189) involving the application of organic chemical(s). organic chemical treatment EO:0001004 cooperl 2013-04-10T14:03:18Z A chemical treatment (EO:0007189) involving the application of inorganic chemical(s). inorganic chemical treatment EO:0001005 cooperl 2013-04-10T14:35:26Z A mineral treatment (EO:0007044) involving exposure of plant to nickel (ChEBI:28112). nickel treatment EO:0001006 cooperl 2013-04-10T14:54:09Z An inorganic anion treatment (EO:0001009) involving the application of phosphate (CHEBI:18367). phosphate treatment EO:0001007 cooperl 2013-04-10T15:26:58Z A mineral treatment (EO:0007044) involving exposure of the plant(s) to mineral salts (CHEBI:24866). A salt (CHEBI:24866) is defined as an assembly of cations and anions. This is a genral term to include the salts of various minerals. mineral salt treatment EO:0001008 cooperl 2013-04-10T15:29:20Z An inorganic anion treatment (EO:0001009) involving the application of sulfate (CHEBI:35175). sulfate treatment EO:0001009 cooperl 2013-04-11T12:29:25Z An inorganic chemical treatment (EO:0001004) involving the application of an anion or a mixture of anions (CHEBI:22563). An anion (ChEBI:22653) is defined as a monoatomic or polyatomic species having one or more elementary charges of the electron. inorganic anion treatment EO:0001010 moorel 2013-04-11T13:43:22Z An organic chemical treatment (EO:0001003) involving the application of a carbohydrate (CHEBI:16646) or mixture of carbohydrates. Carbohydrate (CHEBI:16646) is defined as the generic term 'carbohydrate' includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. carbohydrate treatment EO:0001011 moorel 2013-04-11T13:49:05Z A carbohydrate treatment (EO:0001010) involving the application of monosaccharide(s)(CHEBI:35381). Monosaccharides (CHEBI:35381) are defined as polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H-[CHOH]n-C(=O)[CHOH]m-H with three or more carbon atoms. The generic term 'monosaccharide' (as opposed to oligosaccharide or polysaccharide) denotes a single unit, without glycosidic connection to other such units. It includes aldoses, dialdoses, aldoketoses, ketoses and diketoses, as well as deoxy sugars, provided that the parent compound has a (potential) carbonyl group. monosaccharide treatment EO:0001012 moorel 2013-04-11T13:55:09Z A monosaccharide treatment (EO:0001011) involving the application of hexose (CHEBI:18133) sugar(s). Hexose (CHEBI:18133) is defined as any six-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldohexose) or a ketone group at position 2 (ketohexose). hexose treatment EO:0001013 moorel 2013-04-11T13:59:21Z A hexose treatment (EO:0001012) involving the application of glucose (CHEBI:17234). glucose treatment EO:0001014 moorel 2013-04-11T14:02:57Z A carbohydrate treatment (EO:0001010) involving the application of disaccharide(s)(CHEBI:36233). Disaccharide (CHEBI:36233) is defined as a compound in which two monosaccharides are joined by a glycosidic bond. disaccharide treatment EO:0001015 moorel 2013-04-11T14:07:07Z A disaccharide treatment (EO:0001014) involving the application of sucrose (CHEBI:17992). Sucrose (CHEBI:17992) is defined as a disaccharide formed by glucose and fructose units joined by an acetal oxygen bridge from hemiacetal of glucose to the hemiketal of the fructose. sucrose treatment EO:0001016 cooperl 2013-04-12T11:42:16Z An inorganic chemical treatment (EO:0001004) involving the application of a cation (CHEBI:36916) or mixture of cations . inorganic cation treatment EO:0001017 cooperl 2013-04-12T11:48:32Z An inorganic cation treatment (EO:0001016) involving the application of ammonium (NH4+) (CHEBI:28938). ammonium treatment EO:0001018 cooperl 2013-04-12T12:14:55Z A mineral treatment (EO:0007044) involving exposure of plant to cadmium (CHEBI:22977). cadmium treatment EO:0001019 cooperl 2013-04-12T12:38:49Z An organic chemical treatment (EO:0001003) involving the application of a gas or mixture of gases. organic gas treatment EO:0001020 cooperl 2013-04-12T12:41:25Z An inorganic gas treatment (EO:0001055) that involves the application of carbon dioxide (CHEBI:16526). carbon dioxide treatment EO:0001021 cooperl 2013-04-12T13:04:10Z An inorganic anion treatment (EO:0001009) involving the application of ozone (CHEBI:29382). ozone treatment EO:0001022 cooperl 2013-04-12T13:05:50Z A radiation quality treatment (EO:0007154) involving the exposure to gamma radiation. gamma rays gamma radiation treatment EO:0001023 cooperl 2013-04-12T18:01:37Z An in vitro solid growth medium (EO:0007262) composed of agar. agar growth medium EO:0001024 cooperl 2013-04-12T18:30:23Z An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation. vertical agar growth medium EO:0001025 cooperl 2013-04-12T19:19:27Z A nitrogen macronutrient regimen (EO:0007284) involving exposure of plant to urea (CHEBI:16199) as the primary or sole source of nitrogen. urea nitrogen regimen EO:0001026 cooperl 2013-04-12T19:23:02Z A nitrogen macronutrient regimen (EO:0007284) involving exposure of plant to 5'-S-methyl-5'-thioadenosine (MTA; CHEBI:17509) as the primary or sole source of nitrogen. MTA nitrogen regimen EO:0001027 cooperl 2013-04-12T19:23:17Z A nitrogen macronutrient regimen (EO:0007284) involving exposure of plant to alanine (CHEBI:16449) as the primary or sole source of nitrogen. alanine nitrogen regimen EO:0001028 cooperl 2013-04-12T19:35:46Z A nitrogen macronutrient regimen (EO:0007284) involving exposure of plant to glutamate (CHEBI:29987) as the primary or sole source of nitrogen. glutamate nitrogen regimen EO:0001029 cooperl 2013-04-12T19:36:14Z A nitrogen macronutrient regimen (EO:0007284) involving exposure of plant to arginine (CHEBI:29016) as the primary or sole source of nitrogen. arginine nitrogen regimen EO:0001030 cooperl 2013-04-12T19:40:51Z A nitrogen macronutrient regimen (EO:0007284) involving exposure of plant to ornithine (CHEBI:18257) as the primary or sole source of nitrogen. ornithine nitrogen regimen EO:0001031 cooperl 2013-04-12T19:41:18Z A nitrogen macronutrient regimen (EO:0007284) involving exposure of plant to glutamine (CHEBI:28300) as the primary or sole source of nitrogen. glutamine nitrogen regimen EO:0001032 cooperl 2013-04-13T08:01:41Z An insect plant treatment (EO:0007333) involving the exposure of a plant to an insect(s) of the Hymenoptera order. Hymenoptera insect plant treatment EO:0001033 cooperl 2013-04-13T13:38:41Z A Hymenoptera insect plant treatment (EO:0001032) that involves exposure to parasitic wasps. Parasitic wasp (or parasitoid wasp) refers to a large evolutionary grade of hymenopteran superfamilies, mainly in the Apocrita (from wikipedia). parasitic wasp insect plant treatment EO:0001034 cooperl 2013-04-13T14:56:13Z A Pseudomonas plant treatment (EO:0007144) involving the exposure to bacteria of the Pseudomonas syringae group. Pseudomonas syringae plant treatment EO:0001035 cooperl 2013-04-25T14:11:44Z A physical treatment (EO:0007316) involving both low temperature and moist conditions to overcome seed dormancy. A stratification process is used to pretreat seeds to simulate natural winter conditions in order to overcome dormancy and allow germination. stratification treatment EO:0001036 moorel 2013-04-16T13:48:41Z A chemical treatment (EO:0007189) that induces stress. chemical stress treatment EO:0001037 moorel 2013-04-16T13:54:16Z A chemical stress treatment (EO:0001036) involving use of oxidative stress-inducing chemicals. oxidative stress treatment EO:0001038 moorel 2013-04-16T14:11:36Z A chemical stress treatment (EO:0001036) involving use of osmotic stress-inducing chemicals. osmotic stress treatment EO:0001039 moorel 2013-04-16T14:19:13Z A radiation treatment (EO:0007151) involving exposure of plant to chemicals or radiation resulting in perturbations to the genome. radiation mutagen treatment EO:0001040 moorel 2013-04-16T14:22:02Z A light intensity regimen (EO:0007224) involving use of light-dependent generations of reactive oxygen species. light-induced photooxidative stress treatment EO:0001041 moorel 2013-04-18T15:08:50Z A zinc nutrient treatment (EO:0007309) involving exposure to limiting amounts or absence of zinc (CHEBI:27363). limited zinc treatment EO:0001042 moorel 2013-04-18T15:16:27Z A boron nutrient regimen (EO:0007273) involving exposure to limiting amounts or absence of boron (CHEBI:27560). limited boron treatment EO:0001043 moorel 2013-04-18T15:21:57Z A glucose treatment (EO:0001013) involving exposure to limiting amounts or the absence of glucose (CHEBI:17234). limited glucose treatment EO:0001044 moorel 2013-04-24T12:22:51Z A carbon nutrient regimen (EO:0007303) involving exposure to limiting amounts or the absence of carbon (CHEBI:27594). limited carbon regimen EO:0001045 moorel 2013-04-24T12:37:29Z A sulfate treatment (EO:0001008) involving exposure to limiting amounts or the absence of sulfate (CHEBI:35175). limited sulfate treatment EO:0001046 moorel 2013-04-24T12:43:48Z A phosphate treatment (EO:0001006) involving exposure to limiting amounts or absence of phosphate (CHEBI:18367). limited phosphate treatment EO:0001047 moorel 2013-04-24T13:10:33Z An iron nutrient regimen (EO:0007242) involving exposure to limiting amounts or the absence of iron (CHEBI:18248). limited iron regimen EO:0001048 moorel 2013-04-24T13:21:03Z A molybdenum nutrient regimen (EO:0007253) involving exposure to limiting amounts or the absence of molybdenum (CHEBI:28685). limited molybdenum regimen EO:0001049 moorel 2013-04-24T13:31:00Z A magnesium nutrient regimen (EO:0007288) involving exposure to limiting amounts or the absence of magnesium (CHEBI:25107). limited magnesium regimen EO:0001050 moorel 2013-04-24T13:45:43Z A nitrogen macronutrient regimen (EO:0007284) involving exposure to limiting amounts or the absence of nitrogen (CHEBI:25555). limited nitrogen regimen EO:0001051 moorel 2013-04-24T13:54:39Z A potassium nutrient regimen (EO:0007293) involving exposure to limiting amounts or the absence of potassium (CHEBI:26216). limited potassium regimen EO:0001052 moorel 2013-04-24T14:06:32Z A sulfur nutrient regimen (EO:0007295) involving exposure to limiting amounts or the absence of sulfur (CHEBI:26833). limited sulfur regimen EO:0001053 moorel 2013-04-24T14:16:15Z A manganese nutrient regimen (EO:0007387) involving exposure to limiting amounts or the absence of manganese (CHEBI:18291). limited manganese regimen EO:0001054 moorel 2013-04-24T14:28:43Z A nitrate regimen (EO:0007406) involving exposure to limiting amounts or the absence of nitrate (CHEBI:17632). limited nitrate regimen EO:0001055 moorel 2013-04-25T13:16:47Z An inorganic chemical treatment (EO:0001004) involving the application of a gas or mixture of gases. inorganic gas treatment EO:0001056 moorel 2013-04-25T13:18:08Z A carbon dioxide treatment (EO:0001020) involving an increased concentration of carbon dioxide (CHEBI:16526). elevated carbon dioxide treatment EO:0001057 cooperl 2013-04-25T14:21:09Z A stratification treatment (EO:0001035) involving the absence of, or non-standard exposure to temperature or moisture conditions utilized in the breaking of seed dormancy. abnormal stratification treatment EO:0001058 moorel 2013-06-20T14:02:46Z A fungal plant treatment (EO:0007233) involving the exposure of plant to the pathogen belonging to Glomeromyetes class. Glomeromycota treatment EO:0001059 moorel 2013-06-20T14:08:36Z A Glomeromycota treatment (EO:0001058) involving the exposure of compatible plants to mutualistic arbuscular mycorrhizal fungi. arbuscular mycorrhizal fungal treatment EO:0007001 The treatment using UV-B light either exclusively or as part of a supplemental electromagnetic radiation in the wavelength range of 315-280nm. UV-B light regimen EO:0007002 The treatment using UV-A light either exclusively or as part of a supplemental electromagnetic radiation in the wavelength range of 380-315nm. UV-A light regimen EO:0007003 Exposure to the regions with a temperate climate, which are usually characterized by having roughly equally long winters and summers. temperate region EO:0007004 loam content EO:0007005 A biotic plant treatment (EO:0007357) involving exposure of a plant to another plant. green plant Suggests the exposure of plant to other plants found in its growth environment. These plants may be growing as a weed or as part of normal farming practices. This treatmnet is part of an assay of any direct or indirect, harmful or beneficial effect of one plant on another through the production of chemical compounds (allelochemicals) that escape in the environment. Viridiplantae include all plants from algae through angiosperms. Viridiplantae plant treatment EO:0007008 The exposure of reference/experimental plant to monocot plant Monochoria vaginalis, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Asian pickerel weed heartshape false pickerelweed Monochoria vaginalis EO:0007009 The exposure of reference/experimental plant to dicot plants found in its growth environment. These plants may be growing as a weed or as part of normal farming practices. Eudicot dicot Eudicotyledon EO:0007010 The exposure of reference/experimental plant to monocot plant Sagittaria montevidensis, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. giant arrowhead Sagittaria montevidensis EO:0007011 The exposure of reference/experimental plant to monocot plant Sagittaria longiloba, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Flecha de Agua longlobe arrowhead narrow-leaf arrowhead Sagittaria longiloba EO:0007012 The exposure of reference/experimental plant to monocot plant Heteranthera limosa, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. blue mud-plantain ducksalad Heteranthera limosa EO:0007013 The exposure of reference/experimental plant to monocot plant Echinodorus berteroi, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. upright burhead Echinodorus berteroi EO:0007014 The exposure of reference/experimental plant to monocot plant Echinodorus cordifolius, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Texas mudbaby creeping burhead Echinodorus cordifolius EO:0007015 The exposure of reference/experimental plant to dicot plant genus Ammannia found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Ammannia spp. EO:0007016 The exposure of reference/experimental plant to dicot plant genus Bacopa found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Bacopa spp. EO:0007017 The exposure of reference/experimental plant to monocot plant Cyperus difformis, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. flatsedge smallflower umbrellaplant Cyperus difformis EO:0007018 The exposure of reference/experimental plant to monocot plant Scirpus fluviatilis, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. river bulrush Scirpus fluviatilis EO:0007019 The exposure of reference/experimental plant to monocot plant Cyperus difformis, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. rice field flatsedge Cyperus iria EO:0007020 The exposure of reference/experimental plant to monocot plant Scirpus mucronatus, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. ricefield bulrush Scirpus mucronatus EO:0007021 The exposure of reference/experimental plant to monocot plant Alisma plantago-aquatica found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. water plantain Alisma plantago-aquatica EO:0007022 The exposure of reference/experimental plant to monocot plants found in its growth environment. These plants may be growing as a weed or as part of normal farming practices. monocot monocotyledon Liliopsida EO:0007023 A physical plant treatment (EO:0007316) involving the application of a gas or a combination of gasses. gaseous treatment EO:0007024 The use of conditions in which gaseous or dissolved oxygen is present to study various types of responses on their extrinsic and/or intrinsic stimulus. aerobic environment EO:0007025 The use of conditions in which gaseous or dissolved oxygen is absent (devoid of dioxygen) to study various types of responses on their extrinsic and/or intrinsic stimulus. anaerobic environment EO:0007026 The exposure of reference/experimental plant to monocot plant Echinochloa glabrescens found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. barnyardgrass Echinochloa glabrescens EO:0007027 A plant treatment (EO:0001001) involving an exposure to a given conditions of regional seasons. seasonal environment EO:0007028 The exposure of reference/experimental plant to monocot plant Echinochloa crus-galli, found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. barnyardgrass cockspur grass Echinochloa crus-galli EO:0007029 The exposure of reference/experimental plant to monocot plant of genus Typha spp found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. cattail Typha spp. EO:0007030 The exposure of reference/experimental plant to monocot plant Leptochloa fascicularis found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. bearded sprangeltop Leptochloa fascicularis EO:0007031 The exposure of plant to the anilmals of higher order that may be resopnsible for damaging the plant due to grazing or feeding practices. mammal Mammalia EO:0007033 The treatment involving an exposure to the crop season (October-March) as practiced in South Asia. rabi season EO:0007034 The treatment involving an exposure to the crop season (May-October) as practised in South Asia. kharif season EO:0007035 The treatment involving an exposure to the winter season. winter season EO:0007036 The treatment involving an exposure to the summer season. summer season EO:0007037 The treatment involving an exposure to the spring season. spring season EO:0007038 The treatment involving an exposure to the autumn season. autumn season EO:0007041 A chemical treatment (EO:0007189) involving the use of antibiotic for selection purposes. antibiotic treatment EO:0007043 Treatment involving the exposure of plant to molecular forms of nutrient as supplement to study various types of responses. non-mineral nutrient regimen EO:0007044 An inorganic chemical treatment (EO:0001004) involving the application of a mineral or a combination of minerals. mineral treatment EO:0007045 A plant macronutrient regimen (EO:0007240) involving the use of the primary plant macronutrients nitrogen (N), phosphorus (P), and potassium (K). These plant macronutrients are required by the plant in greatest quantities for normal growth. primary plant macronutrient regimen EO:0007046 Treatment involving the use of macronutrients (Ca, Mg, S) as supplement to study various types of responses. These macronutrients are used less often as fertilizers than the primary elements. secondary macronutrient EO:0007047 Treatment involving the exposure of plant to elemental forms of nutrient as supplement to study various types of responses. These are not considered essential elements. other nutrient regimen EO:0007048 A salt treatment (EO:0007185) involving the use of sodium chloride salt as supplement to liquid and soil growth media to study various types of responses on its application. NaCl treatment sodium chloride regimen EO:0007049 The treatment involving growing plants and exposing them to soil growth media with varying contents. soil environment EO:0007050 The treatment involving growing plants in varying textures of soil growth media. soil texture EO:0007051 sand content EO:0007052 organic matter content EO:0007053 silt content EO:0007054 clay content EO:0007055 Treatment involving the exposure of plant to the pathogen Cochliobolus spp. Cochliobolus spp. EO:0007058 The treatment involving growing plants in varying pH levels of soil growth media. soil pH environment EO:0007059 The treatment involving an exposure to acidic pH levels of soil growth media. acidic pH soil environment EO:0007060 A plant fungal treatment (EO:0007233) involving the exposure of plant to the pathogen Sphaerulina oryzina. Cercospora janseana Cercospora oryzae Sphaerulina oryzina is a causal agent for rice Narrow Brown Leaf Spot disease. Sphaerulina oryzina treatment EO:0007061 Exposure to the geographical region of the Earth limited in latitude by the two tropics namely, the Tropic of Cancer and the Tropic of Capricorn, and thus centered on the equator. This area lies approximately between 23.5 N latitude and 23.5 S latitude, and includes all the parts of the Earth where the sun reaches a point directly overhead at least once during the solar year (north of the Tropic of Cancer and south of the Tropic of Capricorn the sun never reaches an azimuth of 90 or directly overhead). tropical region EO:0007062 The treatment involving an exposure to basic pH levels of soil growth media. basic pH soil environment EO:0007063 An herbicide treatment (EO:0007183) involving the use of diuron (DCMU). 3-(3,4-dichloro-phenyl)-1,1-dimethylurea dichlorophenyldimethyl urea diuron Diuron blocks the reduction of plastoquinone in the photosynthetic light reaction and keeps the plastoquinone pool oxidized. diuron treatment EO:0007064 A plant treatment (EO:0001001) involving exposure to the various factors that comprise a geographical/regional location. ecological environment EO:0007065 Treatment involving the exposure of plant to the pathogen Entyloma oryzae. It is a causal agent for rice Leaf Smut disease. Entyloma dactylidis Entyloma lineatum Entyloma oryzae EO:0007066 A growth hormone treatment (EO:0007165) involving the use of cytokinin (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. 6-benzylaminopurine N-benzyl-adenine verdan senescence cytokinin treatment EO:0007067 The treatment suggesting the use of liquid growth media for growing the plants. soilless pant culture media hydroponic plant culture media EO:0007068 A growth hormone treatment (EO:0007165) involving the use of ethylene (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. ethylene treatment EO:0007069 A growth hormone treatment (EO:0007165) involving the use of GA (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. GA regimen gibberellic acid treatment EO:0007070 An auxin treatment (EO:0007074) involving the use of IAA (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. IAA regimen indole acetic acid treatment EO:0007071 The treatment suggesting the use of liquid growth medium for cell cultured samples. suspension cell culture medium EO:0007072 Treatment involving the exposure of plant to the pathogen Microdochium oryzae. It is a causal agent for rice various forms of Leaf scald disease such as Brown Leaf Blight Disease , Leaf Sheath Browning Disease, Leaf Tip Blight Disease and Leaf Tip Dying Disease. Rhynchosporium oryzae Microdochium oryzae EO:0007073 A fungal plant treatment (EO:0007233) involving the exposure of plant to the pathogen belonging to Basidiomycetes class. basidiomycetes Basidiomycota treatment EO:0007074 A growth hormone treatment (EO:0007165) involving the use of auxin (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. auxin treatment EO:0007075 high light intensity regimen EO:0007076 moderate light intensity regimen EO:0007077 Treatment involving the exposure of plant to the pathogen Tilletia barclayana. It is a causal agent for rice Kernel Smut disease. Neovossia horrida Tilletia barclayana EO:0007078 In biological experiments often it refer to the length of the exposure time. The treatment also includes the quantity of light falling on a per unit area. This may be expressed either in terms of hours for which teh radiation was available or in the units of luminous flux or the lumens. photoperiod regimen light quantity regimen EO:0007079 Treatment involving the use of sulfate fertilizer and its components as supplements to study various types of responses. sulfate fertilizer regimen EO:0007080 A growth hormone treatment (EO:0007165) involving the use of JA (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. JA regimen jasmonic acid treatment EO:0007081 river bank region EO:0007082 sea coast region EO:0007083 Treatment involving the exposure of plant to the pathogen Phoma sorghina. It is a causal agent for rice Glume Blight Disease. Phoma sorghina EO:0007084 Treatment involving the exposure of plant to the pests that do not falll under the well known classes of birds, mammals, insects, nematode and molluscs. other animals EO:0007085 A plant nutrient treatment (EO:0007241) involving the use of a fertilizer, a combination of plant nutrients. fertilizer regimen EO:0007086 Treatment involving the use of inorganic fertilizer and its components as supplements to study various types of responses. chemical fertilizer regimen EO:0007087 Treatment involving the use of organic fertilizer and its component as supplements to study various types of responses. organic fertilizer regimen natural fertilizer regimen EO:0007088 Treatment involving the exposure of plant to the pathogen Ceratobasidium oryzae-sativae. It is a causal agent for rice Aggregate Sheath Spot disease, which is also known as Brown Sclerotial disease. Ceratobasidium oryzae-sativae Ceratobasidium sativae Rhizoctonia oryzae-sativae Ceratobasidium oryzae-sativae EO:0007089 bone meal regimen EO:0007090 Treatment involving the use of ammonium nitrate supplement to study various types of responses. ammonium nitrate regimen EO:0007091 seaweed extract regimen EO:0007092 wood ash regimen EO:0007093 fish meal regimen EO:0007094 Treatment involving the use of sodium nitrate supplement to study various types of responses. sodium nitrate regimen EO:0007095 Treatment involving the use of calcium nitrate supplement to study various types of responses. calcium nitrate regimen EO:0007096 Treatment involving the use of potassiumium nitrate supplement to study various types of responses. potassium nitrate regimen EO:0007097 Treatment involving the use of ammonium sulfate supplement to study various types of responses. ammonium sulfate regimen EO:0007098 Treatment involving the use of ferrous sulfate supplement to study various types of responses. ferrous sulfate regimen EO:0007099 Treatment involving the use of potassium sulfate supplement to study various types of responses. potassium sulfate regimen EO:0007100 Treatment involving the use of super phosphate supplement to study various types of responses. superphosphate regimen EO:0007101 Treatment involving the use of urea as source of nitrogen supplement to study various types of responses. urea regimen EO:0007102 Treatment involving the use of nitrogen fertilizer and its components as supplements to study various types of responses. nitrogen fertilizer regimen EO:0007103 Treatment involving the use of phosphate fertilizer and its components as supplements to study various types of responses. phosphate fertilizer regimen EO:0007104 Treatment involving the use of nitrogen, phosphorus and potassium supplements to study various types of responses. NPK fertilizer regimen EO:0007105 A growth hormone treatment (EO:0007165) involving the use of abscisic acid (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. ABA regimen abscisic acid treatment EO:0007106 Treatment involving the exposure of plant to the Stramenopiles (heterokonts) present in the growth environment. chromophyta heterokont Stramenopiles EO:0007107 A fungal plant treatment (EO:0007233) involving the exposure of plant to the pathogen belonging to Ascomycetes class. ascomycetes Ascomycota treatment EO:0007109 Treatment involving the exposure of plant to the pathogenic single strand RNA positive stand virus. ssRNA positive-strand virus with no DNA stage EO:0007110 Treatment involving the exposure of plant to the pathogenic double stranded RNA virus. dsRNA nonenveloped viruses dsRNA virus EO:0007111 Treatment involving the exposure of plant to the pathogenic single strand RNA negative stand virus. ssRNA negative-strand virus EO:0007112 Treatment involving the exposure of plant to the pathogenic retroid virus. retroid virus EO:0007113 Treatment involving the exposure of plant to the rice necrosis mosaic virus. It is a causal agent for rice necrosis mosaic disease. RNMV rice necrosis mosaic virus rice necrosis mosaic virus EO:0007114 Treatment involving the exposure of plant to the pest of lepidoptera class. butterfly moth Lepidoptera EO:0007115 Treatment involving the exposure of plant to the pest Spodoptera spp. Spodoptera spp. EO:0007116 An insect plant treatment (EO:0007333) involving the exposure of a plant to an insect(s) of the Hemiptera order. bug Insects of the Hemiptera order include aphids, planthoppers, bugsnwhiteflies, scale insects, psyllids and jumping plant lice. Hemiptera insect plant treatment EO:0007117 Treatment involving the exposure of plant to the pest rice army worm. armyworm Pseudaletia spp. EO:0007118 Treatment involving the exposure of plant to the pathogen Gibberella spp. Gibberella spp. EO:0007119 An insect plant treatment (EO:0007333) involving the exposure of a plant to an insect(s) of the Diptera order. fly Dipteran insect plant treatment EO:0007120 Treatment involving the exposure of plant to the pest commonly called as beetles or Coleoptera. beetle Coleoptera EO:0007121 Treatment involving the exposure of plant to the pest of Thysanoptera class. thrips Thysanoptera EO:0007122 Treatment involving the exposure of plant to the pest Chilo. stalk borer stemborer Chilo EO:0007123 Treatment involving the exposure of plant to the pest rice spotting bug. rice spotting bug Eysarcoris trimaculatus EO:0007126 Treatment involving the exposure of plant to the pest Hirschmaniella spp. It is a causal agent for rice root nematode disease. Hirschmaniella spp. EO:0007127 Treatment involving the exposure of plant to the pest Meloidogyne spp. It is a causal agent for rice root knot nematode disease. root-knot nematode Meloidogyne spp. EO:0007128 In biological experiments it refer to the intermittent exposure of plant to the cycles of light and dark or one light Vs the another type of light. intermittent light regimen EO:0007129 The treatment using UV-C light either exclusively or as part of a supplemental electromagnetic radiation in the wavelength range of 280-10nm. UV-C light regimen EO:0007130 The treatment using infra-red light either exclusively or as part of a supplemental light of near IR band that contains energy in the range of wavelengths 750-1300nm, which is closest to the visible light. near IR light regimen near infra-red light regimen EO:0007131 The treatment using middle infra-red light either exclusively or as part of a supplemental light treatment involving middle IR band that contains energy in the range of wavelengths 1300-3000nm. middle infra-red light regimen EO:0007132 The treatment using far infra-red light either exclusively or as part of a supplemental light treatment involving far IR band that contains energy in the range of wavelengths 3000-14000nm. far infra-red light regimen EO:0007133 The treatment involving an exposure to basic pH levels of the growth media. basic pH environment basic pH growth media environment EO:0007134 The treatment involving an exposure to acidic pH levels of the growth media. acidic pH environment acidic pH growth media environment EO:0007135 The treatment involving an exposure of plant to the pathogen Magnaporthe spp. Magnaporthe spp. EO:0007136 The treatment involving an exposure of plant to the Achlya spp. Achlya spp. EO:0007137 The treatment involving an exposure of reference/experimental plant to monocot plant genus Echinochloa found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Echinochloa spp. EO:0007138 The treatment involving an exposure of reference/experimental plant to monocot plant genus Echinodorus found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. burhead Echinodorus spp. EO:0007139 The treatment involving an exposure of reference/experimental plant to monocot plant genus Sagittaria found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. arrowhead Sagittaria spp. EO:0007140 The treatment involving an exposure of reference/experimental plant to monocot plant genus Scirpus found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Scirpus spp. EO:0007141 The treatment involving an exposure of reference/experimental plant to monocot plant genus Cyperus found in its growth environment. This plant may be growing as a weed or as part of normal farming practices. Cyperus spp. EO:0007142 The treatment involving an exposure of plant to the pest Scirpophaga spp. Scirpophaga spp. EO:0007143 A bacterial plant treatment (EO:0007246) involving the exposure to bacteria of the genus Erwinia. Erwinia plant treatment EO:0007144 A bacterial plant treatment (EO:0007246) involving the exposure to bacteria of the genus Pseudomonas. Pseudomonas plant treatment EO:0007145 A bacterial plant treatment (EO:0007246) involving the exposure to bacteria of the genus Xanthomonas. Xanthomonas plant treatment EO:0007146 The treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity. gravity EO:0007147 An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples. plant growth medium EO:0007148 The treatment involving an exposure of plant to the pathogen Xanthomonas oryzae. It is a causal agent for rice bacterial blight disease. Pseudomonas oryzae Xanthomonas oryzae EO:0007149 A chemical treatment (EO:0007189) involving use of mutagen for the mutagenesis process. chemical mutagen treatment EO:0007151 A physical plant treatment (EO:0007316) involving an exposure with a radiation type, intensity or quantity. light regimen EMR is classified according to the frequency of its wave. The electromagnetic spectrum, in order of increasing frequency and decreasing wavelength, consists of radio waves, microwaves, infrared radiation, visible light, ultraviolet radiation, X-rays and gamma rays. (from Wikipedia). radiation treatment EO:0007152 The treatment involving amount of energy of any radiation incident upon (or flowing through) unit area, perpendicular to the radiation source, in unit time. radiation intensity regimen EO:0007153 In biological experiments it refer to the treatment involving radiation in terms of length of the exposure time. It also includes the quantity of radiation falling on a per unit area. This is expressed in the units of luminous flux or the lumens. radiation quantity regimen EO:0007154 The treatment involving an exposure to a given type of radiation. Often it is in the form of electromagnetic and ionizing radiation such as light (infrared, visible or ultraviolet), x-rays, gamma rays, etc. radiation quality treatment EO:0007155 The treatment involving growing plants in different types of soil growth media. soil type EO:0007156 clay soil EO:0007157 loam soil EO:0007158 sandy soil EO:0007159 sandy loam soil EO:0007160 The treatment involving an exposure to water with varying degree of temperature, which may depend on regional environment. water temperature regimen EO:0007161 The treatment involving an exposure to wind with varying degree of temperature, which may depend on the study type or the regional environment. air temperature regimen EO:0007162 The treatment involving continuous exposure of light to the plant. continuous light regimen EO:0007163 The treatment involving an exposure of plant to the scheduled or natural exposure of day light and night cycles to the plant. day light regimen EO:0007164 The treatment involving an exposure to standing water during whole life span of the plant. This also results in anaerobic soil conditions for a long period. standing deep water EO:0007165 A chemical treatment (EO:0007189) involving the use of growth hormones to study various types of responses on their extrinsic and/or intrinsic application. growth hormone treatment EO:0007166 The treatment involving an exposure of plant to the Pythium spinosum. It is a causal agent for rice seedling blight (fungal) or feeder root necrosis or water mold dieases. Water mold diease is also called as seed rot or seedling damping-off disease. Pythium spinosum EO:0007167 A chemical treatment (EO:0007189) involving the application of a pesticide; a chemical entity or mixture of chemical entities. pesticide treatment EO:0007168 An antibiotic treatment (EO:0007041) involving use of hygromycin B antibiotic for selection purposes. Antibiotic A-396-II hygromycin B regimen hygromycin treatment EO:0007171 The treatment involving exposure of plants to varying levels of pH of the growth media. pH regimen EO:0007172 The treatment involving an exposure to standing water from flash floods for a small part of plant's life span. This also results in anaerobic soil conditions for a short period. flood water EO:0007173 The treatment involving an exposure to above optimal temperature, which may depend on the study type or the regional environment. warm/hot temperature regimen EO:0007174 The treatment involving an exposure to cold or sub-optimal temperature, which may depend on the study type or the regional environment. cold temperature regimen EO:0007175 A physical plant treatment (EO:0007316) involving an exposure to varying degree of temperature, which may depend on regional environment. temperature environment EO:0007176 The treatment involving an exposure to a given elevation/height above sea level. altitute EO:0007177 Suggests the exposure of plant to the Pythium myriotylum. It is a causal agent for rice feeder root necrosis disease. Pythium myriotylum EO:0007178 The treatment involving an exposure to a given pressure of the atmosphere at a given point. Its measurement can be expressed in several ways. One is in millibars. Another is in inches or millimeters of mercury (Hg). barometric pressure atmospheric pressure EO:0007179 The treatment involving exposure of plant to the Pythium irregulare. It is a causal agent for rice feeder root necrosis disease. Pythium irregulare EO:0007180 An auxin treatment (EO:0007074) involving use of 2,4-D growth hormone/herbicide to study various types of responses on its extrinsic and/or intrinsic application. 2,4-D regimen Amidox B-Selektonon Crotilin Decamine Dicopur U-5043 Weed Tox Weedar 64A Weedone-2,4-DP 2,4-dichlorophenoxyacetic acid treatment EO:0007181 The treatment involving an exposure to a given amount of rainfall. rainfall EO:0007182 The treatment involving exposure of plant to the Pythium graminicola. It is a causal agent for rice feeder root necrosis disease. Pythium graminicola EO:0007183 A pesticide treatment (EO:0007167) involving the application of a herbicide; a chemical entity or mixture of chemical entities. herbicide treatment EO:0007184 The treatment involving exposure of plant to the Pythium dissotocum. It is a causal agent for rice seedling blight (fungal) or water mold dieases. Water mold diease is also called as seed rot or seedling damping-off disease. Pythium dissotocum EO:0007185 A chemical treatment (EO:0007189) involving use of salts as supplement to liquid and soil growth media to study various types of responses on their application. This treatment may be used to simulate the growth conditions of sea coast regions and saline/sodic soils. salt treatment EO:0007186 The treatment involving exposure of plant to the Pythium catenulatum. It is a causal agent for rice feeder root necrosis disease. Pythium catenulatum EO:0007187 An organic chemical treatment (EO:0001003) involving the application of salicylic acid (CHEBI:16914). An organic chemical treatment (EO:0001003) invloving the application of salicylic acid (CHEBI:16914). salicylic acid treatment EO:0007188 The treatment involving exposure of plant to the Pythium arrhenomanes. It is a causal agent for rice feeder root necrosis disease. Pythium arrhenomanes EO:0007189 An abiotic plant treatment (EO:0007191) involving the application of chemical(s). other chemical regimen chemical treatment EO:0007190 The treatment involving exposure of plant to the pathogen Ustilaginoidea virens. It is a causal agent for rice False Smut Disease also called as Green Smut disease. Ustilaginoidea virens EO:0007191 A plant treatment (EO:0001001) involving the application of chemical or non-biological factors. abiotic plant treatment EO:0007192 The treatment involving exposure of plant to the pathogen Drechslera gigantea. It is a causal agent for rice Eyespot disease. Drechslera gigantea EO:0007193 day light intensity EO:0007194 The treatment involving exposure of plant to the pathogen Sclerophthora macrospora. It is a causal agent for rice Downy Mildew disease. Sclerophthora macrospora Sclerospora macrospora EO:0007195 The treatment involving exposure of plant to the rice ragged stunt virus. It is a causal agent for rice ragged stunt disease. RRSV rice ragged stunt oryzavirus rice ragged stunt virus rice ragged stunt virus EO:0007196 The treatment involving day light as the light of the sun or the artificial light in a growth chamber. artificial daylight artificial light day light natural light sun light A type of light used in a commercial light box to simulate natural daylight. For experiments carried out in growth chambers, the daylight is a light source providing a color temperature of 6500+/-200 K at an illumination of 90 to 120 ft/candles. This source is typically provided by fluorescent, tungsten or halogen lamps. light regimen EO:0007197 The treatment involving an exposure to varying degree of humidity, which may depend on regional environment. humidity regimen EO:0007198 A physical plant treatment (EO:0007316) involving an exposure of varying amounts of water and watering frequencies, which may depend on regional environment. water environment EO:0007199 The treatment involving exposure of plant to long day light duration followed by a short night cycle. long day length regimen EO:0007200 The treatment involving exposure of plant to short day light duration followed by a long night cycle. short day length regimen EO:0007202 The treatment using infra red (IR) light either exclusively or as part of a supplemental light treatment involving IR light in the wavelength range of 700nm-1mm. IR light regimen EO:0007203 The treatment using far red light either exclusively or as part of a supplemental light treatment involving red color light in the wavelength range of 800-700 nM. Pfr light far red light regimen EO:0007204 "An auxin treatment (EO:0007074) involving use of 1-naphthaleneacetic acid growth hormone/herbicide to study various types of responses on its extrinsic and/or intrinsic application." [CAS:[68-87-3\], GR:pj] NAA Naphthylacetic acid 1-naphthaleneacetic acid treatment EO:0007205 The treatment involving exposure of plant to the rice grassy stunt 2 virus. It is a causal agent for rice grassy stunt disease. RGSV-2 rice grassy stunt 2 virus EO:0007206 The treatment involving exposure of plant to the pathogen Gaeumannomyces graminis. It is a causal agent for rice Crown Sheath Rot Disease also called as Arkansas Foot Rot Disease, Black Sheath Rot Disease and Brown Sheath Rot Disease. Gaeumannomyces graminis EO:0007207 The treatment using red light either exclusively or as part of a supplemental light treatment involving red color light in the wavelength range of 780-622 nM. Pr light red light regimen EO:0007208 The treatment involving exposure of plant to the rice grassy stunt 1 virus. It is a causal agent for rice grassy stunt disease. RGSV-1 rice grassy stunt 1 virus EO:0007209 The treatment involving exposure of plant to the pathogen Phomopsis oryzae-sativae. It is a causal agent for rice Collar Rot Disease. Phomopsis oryzae-sativae EO:0007210 A biotic plant treatment (EO:0007357) involving exposure of a plant to a virus or a combination of two or more viruses. virus plant treatment EO:0007211 The treatment involving exposure of plant to the pathogen Cochliobolus miyabeanus. It is a causal agent for rice Brown Spot diseaseand/or Seedling Blight (Fungal) disease. Bipolaris oryzae Dreschlera oryzae Helminthosporium oryzae Cochliobolus miyabeanus EO:0007212 The treatment involving exposure of plant to the mycoplasma pest. Mycoplasma EO:0007214 The treatment involving exposure of plant to the pathogenic Alternaria sp. Alternaria spp. EO:0007215 The treatment using orange light either exclusively or as part of a supplemental light treatment involving orange color light in the wavelength range of 622-597 nM. orange light regimen EO:0007216 The treatment using yellow light either exclusively or as part of a supplemental light treatment involving yellow color light in the wavelength range of 597-577 nM. yellow light regimen EO:0007217 The treatment using green light either exclusively or as part of a supplemental light treatment involving green color light in the wavelength range of 577-492 nM. green light regimen EO:0007218 The treatment using blue light either exclusively or as part of a supplemental light treatment involving blue color light in the wavelength range of 492-455 nM. blue light regimen EO:0007219 The treatment using indigo light either exclusively or as part of a supplemental light treatment involving indigo color light in the wavelength range of 450-440 nM. indigo light regimen EO:0007220 The treatment using violet light either exclusively or as part of a supplemental light treatment involving violet color light in the wavelength range of 455-390 nM. violet light regimen EO:0007221 The treatment using visible light in the wavelength range of 380-780 nM. Visible light is the portion of the electromagnetic spectrum that is visible to the human eye. The optical spectrum is a composite, or mixture, of the various colors. visible light regimen EO:0007222 The treatment using UV-B light either exclusively or as part of a supplemental light involving electromagnetic radiation in the wavelength range of 315-10nm. UV light regimen EO:0007223 A cadmium treatment (EO:0001018) involving use of CdCl2 (CHEBI:35456). CdCl2 Can be used to assess plant response to cadmium, a heavy metal. cadmium chloride treatment EO:0007224 The treatment involving exposure of plant or a plant part to the amount of light energy incident upon (or flowing through) unit area, perpendicular to the radiation source, in unit time. light intensity regimen EO:0007225 The treatment involving exposure of plant to fluorine as supplement to study various types of responses. fluorine nutrient regimen EO:0007226 The treatment involving exposure of plant to the pathogen Magnaporthe grisea. It is a causal agent for rice various forms of Blast diseases such as Collar Blast, Leaf Blast, Neck Blast, Panicle Blast and Nodal Blast disease. Piricularia grisea Pyricularia grisea Pyricularia oryzae rice blast fungus Magnaporthe grisea EO:0007227 The treatment involving exposure of plant to the pathogen Cochliobolus lunatus. Cochliobolus lunatus EO:0007228 The treatment involving exposure of plant to chromium as supplement to study various types of responses. chromium nutrient regimen EO:0007229 The treatment involving exposure of plant to the pathogen Gibberella fujikuroi. Fusarium fujikuroi Fusarium moniliforme It is a causal agent for rice Bakanae disease and also for a form of rice Seedling Blight (Fungal) Disease. Gibberella fujikuroi EO:0007230 The treatment involving exposure of plant to iodine as supplement to study various types of responses. iodine nutrient regimen EO:0007231 A plant experimental condition (EO:0007359) or set of conditions describing what kind of plant growth facility was used for the experiment. study type EO:0007232 The treatment involving exposure of plant to selenium as supplement to study various types of responses. selenium nutrient regimen EO:0007233 A biotic plant treatment (EO:0007357) involving exposure of a plant to a fungus or a combination of fungi. fungal plant treatment EO:0007234 The treatment involving exposure of plant to the pathogen Pseudomonas fuscovaginae. It is a causal agent for rice Sheath Brown Rot disease. Pseudomonas fuscivaginae Pseudomonas fuscovaginae EO:0007235 The treatment involving exposure of plant to silicon as supplement to study various types of responses. silicon nutrient regimen EO:0007236 The treatment involving exposure of plant to the pathogen Pseudomonas plantarii. It is a causal agent for rice Seedling Blight (Bacterial) disease. Burkholderia plantarii Burkholderia vandii Pseudomonas plantarii EO:0007239 The treatment involving exposure of plant to elements that are required in tiny quantities for growth, as supplement to study various types of responses. trace element regimen micronutrient regimen EO:0007240 A plant nutrient treatment (EO:0007241) involving the use of a plant macronutrient or combination of plant macronutrients. The macronutrients comprise the elements required by the plant in relatively large quantities for normal growth. plant macronutrient regimen EO:0007241 A plant chemical treatment (EO:0007189) involving a plant nutrient or a combination of plant nutrients. fertilizer regimen plant nutrient treatment EO:0007242 The treatment involving exposure of plant to micronutrient iron as supplement to study various types of responses. iron nutrient regimen EO:0007243 The treatment involving exposure of plant to the pathogen Pseudomonas glumae. It is a causal agent for rice Grain Rot disease. Burkholderia glumae Pseudomonas glumae EO:0007244 The treatment involving exposure of plant to micronutrient chlorine as supplement to study various types of responses. chlorine nutrient regimen EO:0007245 The treatment involving exposure of plant to the pathogen Erwinia chrysanthemi. It is a causal agent for rice Foot Rot disease. Erwinia chrysanthemi EO:0007246 A biotic plant treatment (EO:0007357) involving exposure of a plant to bacteria. eubacteria bacterial plant treatment EO:0007247 The treatment involving exposure of plant to the pathogen Erwinia herbicola. The susceptible plants suffer from Bacterial Palea Browning disease. Pantoea agglomerans Erwinia herbicola EO:0007248 The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions. green house study EO:0007249 The treatment involving exposure of plant to the pathogen Xanthomonas oryzae pv. oryzicola. It is a causal agent for rice bacterial blight disease. Xanthomonas campestris pv. oryzicola Xanthomonas oryzae pv. oryzicola EO:0007250 The treatment involving exposure of plant to the pest zigzag leafhopper. zigzag leafhopper Recilia dorsalis EO:0007251 The treatment involving exposure of plant to the pathogen Pseudomonas syringae pathovar panici. It is a causal agent for rice Bacterial Brown Stripe disease. Pseudomonas syringae pv. panici EO:0007252 The treatment involving exposure of plant to the pest white-backed planthopper. white-backed planthopper Sogatella furcifera EO:0007253 The treatment involving exposure of plant to micronutrient molybdenum as supplement to study various types of responses. molybdenum nutrient regimen EO:0007254 The treatment involving exposure of plant to the pathogen Pseudomonas avenae. It is a causal agent for rice Bacterial Brown Stripe disease. Acidovorax avenae Pseudomonas avenae EO:0007255 The treatment where the plants were grown under laboratory / open room conditions, with very few controlled parameters. This may involve supplemental treatments in addition to any naturally occurring conditions. laboratory study EO:0007256 The treatment where the plants were grown under field conditions. This may involve supplemental treatments in addition to any naturally occurring conditions. open field study field study EO:0007257 The treatment involving exposure of plant to the pathogen Xanthomonas oryzae pv. oryzae. It is a causal agent for rice bacterial blight disease. Xanthomonas campestris pv. oryza Xanthomonas oryzae pv. oryzae EO:0007258 The treatment involving exposure of plant to the pest rice stink bug. rice stink bug Oebalus pugnax EO:0007259 The treatment involving an exposure to varying amounts of water in soil growth media. soil water content EO:0007260 The treatment involving exposure of plant to the pest commonly calles as rice stem borer. rice stem borer stalked-eyed fly Diopsis macrophthalma EO:0007261 The treatment involving exposure of plant to micronutrient copper as supplement to study various types of responses. copper nutrient regimen EO:0007262 An in vitro growth medium (EO:0007266) involving use of a solid growth medium as a substrate. in vitro solid growth medium EO:0007263 The treatment involving exposure of plant to the pest white rice borer. African white stemborer African whiteheads white rice borer Maliarpha separatella EO:0007264 The treatment involving exposure of plant to the pest purple stem borer. pink stem borer purple borer purple stem borer Sesamia inferens EO:0007265 An in vitro growth medium (EO:0007265) involving use of liquid culture media as a substrate. in vitro liquid growth medium EO:0007266 A growth medium environment (EO:0007147) for in vitro culture, involving use of a solid or liquid substrate and which may include nutrients and other amendments. in vitro growth medium EO:0007267 A fungicide treatment (EO:0007268) involving use of benzothiadiazole to study various types of responses on its application. benzothiadiazole treatment EO:0007268 A pesticide treatment (EO:0007167) involving the application of a fungicide; a chemical entity or mixture of chemical entities. fungicide treatment EO:0007269 The treatment involving study type in which plants were grown in growth chambers. growth chamber study EO:0007270 The treatment involving continuous exposure to darkness (no light) to the plant. continuous night regimen continuous dark (no light) regimen EO:0007271 low light intensity regimen EO:0007272 The treatment involving exposure of plant to the pest Scirpophaga innotata. Tipanaea sericea white rice stemborer white stemborer Scirpophaga innotata EO:0007273 The treatment involving exposure of plant to micronutrient boron as supplement to study various types of responses. boron nutrient regimen EO:0007274 The treatment involving exposure of plant to the pest Scirpophaga incertulas. yellow stem borer Scirpophaga incertulas EO:0007275 The treatment involving exposure of plant to the pest rice stemborer, Rupela albinella. rice stemborer Rupela albinella EO:0007276 The treatment involving exposure of plant to cobalt as supplement to study various types of responses. cobalt nutrient regimen EO:0007277 The treatment involving exposure of plant to the pest dark-headed stemborer. dark-headed stemborer Chilo polychrysus EO:0007278 The treatment involving exposure of plant to oxygen to study various types of responses. oxygen regimen EO:0007279 The treatment involving exposure of plant to the pest rice striped stemborer. Asiatic rice borer striped stemborer Chilo suppressalis EO:0007280 The treatment involving study type where nothing is known in the reported literature/study about the kind of growth facilities used. unknown study type EO:0007282 The treatment involving an exposure to standing water during a plant's life span. This also results in anaerobic soil conditions for a either long or short periods. standing water EO:0007283 The treatment involving exposure of plant to the pest commonly called as oriental rice thrips. oriental rice thrips rice thrips Stenchaetothrips biformis EO:0007284 A primary plant macronutrient regimen (EO:0007045) involving the application of nitrogen. nitrogen macronutrient regimen EO:0007285 The treatment involving an exposure to the wet or the rainy season. monsoon season wet season rainy season EO:0007286 The treatment involving an exposure to the dry season. dry season EO:0007287 An herbicide treatment (EO:0007183) involving the use of dibromothymoquinone (DBMIB). 2,5-dibromo -6-isopropyl-3-methyl-1,4-benzoquinone DBMIB blocks the oxidation of plastoquinol in the photosynthetic light reaction and keeps the plastoquinone pool reduced. dibromothymoquinone treatment EO:0007288 The treatment involving exposure of plant to macronutrient magnesium as supplement to study various types of responses. magnesium nutrient regimen EO:0007289 The treatment involving exposure of plant to the pest rice whorl maggot. rice whorl maggot Hydrellia philippina EO:0007290 A cytokinin treatment (EO:0007066) involving use of kinetin, a cytokinin homolog to study various types of responses on its extrinsic and/or intrinsic application. kinetin treatment EO:0007291 "A cytokinin treatment (EO:0007066) involving use of benzyladenine a cytokinin homolog to study various types of responses on its extrinsic and/or intrinsic application." [CAS:[1214-39-7\], GR:pj, web:http\://en.wikipedia.org/wiki/6-Benzylaminopurine] 6-benzylaminopurine BAP Benzylaminopurine N-(Phenylmethyl)-1H-purin-6-amine N-benzyl-adenine verdan senescence inhibitor It is a first-generation synthetic cytokinin which elicits plant growth and development responses, setting blossoms and stimulating fruit richness by stimulating cell division. It is an inhibitor of respiratory kinase in plants, and increases post-harvest life of green vegetables. benzyladenine treatment EO:0007292 An herbicide treatment (EO:0007183) involving the use of ethylphosphine (CCP). carbonyl cyanide phenylhydrazone carbonylcyanide-m-chlorophenylhydrazone ethylphosphine treatment EO:0007293 The treatment involving exposure of plant to macronutrient potassium as supplement to study various types of responses. potassium nutrient regimen EO:0007294 The treatment involving exposure of plant to the pest Pelopidas mathias. black branded swift lesser millet skipper small branded swift Pelopidas mathias EO:0007295 The treatment involving exposure of plant to macronutrient sulfur as supplement to study various types of responses. sulfur nutrient regimen EO:0007296 The treatment involving exposure of plant to the pest Dicladispa armigera. rice hispa Dicladispa armigera EO:0007297 The treatment involving exposure of plant to macronutrient calcium as supplement to study various types of responses. calcium nutrient regimen EO:0007298 The treatment involving exposure of plant to the pest rice delpahcid. Tagosodes orizicolus rice delpahcid Sogatodes oryzicola EO:0007300 The treatment involving exposure of plant to the pest paddy bug. paddy bug rice bug Leptocorisa oratorius EO:0007302 The treatment involving use of T-DNA in the flanking regions of a DNA insert for mutagenesis process. T-DNA insert EO:0007303 The treatment involving exposure of plant to carbon source as supplement to study various types of responses. carbon nutrient regimen EO:0007304 The treatment involving exposure of plant to the pest Marasmia patnalis . leaffolder Marasmia patnalis EO:0007305 The treatment involving exposure of plant to the pest Cnaphalocrocis medinalis. defloiator leaffolder rice leaffolder Cnaphalocrocis medinalis EO:0007306 The treatment involving exposure of plant to aluminium as supplement to study various types of responses. aluminum nutrient regimen EO:0007307 The treatment involving use of transposable element as an insert for mutagenesis process. TE insert transposable element insert EO:0007308 The treatment involving exposure of plant to the pest green leaf hopper. green leafhopper Nephotettix spp EO:0007309 The treatment involving exposure of plant to micronutrient zinc as supplement to study various types of responses. zinc nutrient regimen EO:0007310 The treatment involving use of Ac/Ds transposable system for mutagenesis process. Ac/Ds transposable element EO:0007311 The treatment involving exposure of plant to the pest rice gall midge. Asian rice gall midge gall midge Orseolia oryzae EO:0007312 The use of Tos-17 transposable element for mutagenesis process. Tos-17 transposable element EO:0007313 The treatment involving exposure of plant to the pest Pseudaletia separata. armyworm Pseudaletia separata EO:0007314 The treatment involving exposure of plant to the pest rice caseworm. caseworm rice caseworm Nymphula depunctalis EO:0007315 The treatment involving use of gravity factor to study various types of responses in the absence of gravity or space like conditions. zero gravity EO:0007316 An abiotic plant treatment (EO:0007191) involving the application of a physical factor such as temperature, moisture, gravity, wind, radiation, etc. or a combination thereof. physical plant treatment EO:0007317 The treatment involving exposure of plant to the pest brown planthopper. brown planthopper Nilaparvata lugens EO:0007318 The treatment involving exposure of plant to the rice yellow mottle virus. It is a causal agent for rice yellow mottle disease. RYMV rice yellow mottle virus EO:0007319 The treatment involving an exposure to above optimal air temperature, which may depend on the study type or the regional environment. warm/hot air temperature regimen EO:0007320 The treatment involving exposure of plant to the pest Meloidogyne oryzae. It is a causal agent for rice root knot nematode disease. Meloidogyne arenaria EO:0007321 The treatment involving exposure of plant to the pest Hirschmaniella spinicaudata. It is a causal agent for rice root nematode disease. Hirschmaniella spinicaudata EO:0007322 The treatment involving exposure of plant to the pest Hirschmaniella oryzae. It is a causal agent for rice root nematode disease. Hirschmaniella oryzae EO:0007323 The treatment involving exposure of plant to the pest Hirschmaniella mucronata. It is a causal agent for rice root nematode disease. Hirschmaniella mucronata EO:0007324 The treatment involving exposure of plant to the pest Hirschmaniella imamuri. It is a causal agent for rice root nematode disease. rice root nematode Hirschmaniella imamuri EO:0007325 The treatment involving exposure of plant to the pest Hirschmaniella imamuri. It is a causal agent for rice root nematode disease. Hirschmaniella caudacrena EO:0007326 The treatment involving exposure of plant to the pest mycoplasma like organism. MLO mycoplasma like organism EO:0007327 The treatment involving exposure of plant to the pathogen Mycovellosiella oryzae. It is a causal agent for rice White Leaf Streak Disease. Ramularia oryzae Mycovellosiella oryzae EO:0007328 The treatment involving exposure of plant to the heterokont Pythium. Pythium spp. EO:0007329 The treatment involving exposure of plant to the pest commonly called as western yellowstriped armyworm. western yellowstriped armyworm Spodoptera praefica EO:0007330 The treatment involving exposure of plant to the pest commonly calles as lawn armyworm. Prodenia acronyctoides lawn armyworm Spodoptera mauritia EO:0007331 The treatment involving exposure of plant to the pest Pseudaletia unipuncta. armyworm Pseudaletia unipuncta EO:0007332 The treatment involving an exposure to cold or sub-optimal air temperature, which may depend on the study type or the regional environment. cold air temperature regimen EO:0007333 A metazoan plant treatment (EO:0007349) involving exposure of a plant to an insect or a mixture of insects. insect true insects insect plant treatment EO:0007334 The treatment involving exposure of plant to the pest Pomacea canaliculata. apple snail golden apple snail Pomacea canaliculata EO:0007335 The treatment involving exposure of plant to the pest molluscs. mollusc mollusk Mollusca EO:0007336 The treatment involving exposure of plant to the pest Ditylenchus angustus. It is a causal agent for rice Ufra disease. rice stem nematode ufra nematode Ditylenchus angustus EO:0007337 The treatment involving exposure of plant to the nematode pests. round worm roundworm Nematoda EO:0007338 The treatment involving an exposure to cold or sub-optimal water temperature, which may depend on the study type or the regional environment. cold water temperature regimen EO:0007339 The treatment involving exposure of plant to the rice tungro spherical virus. It is a causal agent for rice tungro disease, which is also called as Mentek or Waika diease. RTSV rice leaf yellowing virus rice penyakit mentek virus rice tungro spherical waikavirus rice waika virus rice yellow leaf virus tungro virus rice tungro spherical virus EO:0007340 The treatment involving exposure of plant to the heterokont Achlya conspicua. It is a causal agent for rice water mold diease which is also called as seed rot or seedling damping-off disease. Achlya conspicua EO:0007341 The treatment involving exposure of plant to the pathogenic Fusarium spp. It is a causal agent for rice Water Mold disease also called as Seed Rot Disease or Seedling Damping-off Disease. Fusarium spp. Fusarium EO:0007342 The treatment involving exposure of plant to the heterokont Achlya klebsiana. It is a causal agent for rice water mold diease which is also called as seed rot or seedling damping-off disease. Achlya klebsiana EO:0007343 The treatment involving exposure of plant to the cattle. cattle Bovinae EO:0007344 The treatment involving exposure of plant to the rice tungro bacilliform virus. It is a causal agent for rice tungra disease which is also called as Mentek or Waika disease. RTBV rice yellow orange leaf virus rice tungro bacilliform virus EO:0007345 The treatment involving exposure of plant to the pest rats and mouse. mouse rat rodent Rodentia EO:0007346 The treatment involving exposure of plant to the rice yellow stunt virus. It is a causal agent for rice transitory yellowing disease. RTYV RYSV rice transitory yellowing virus rice yellow stunt rhabdovirus rice yellow stunt virus EO:0007347 The treatment involving exposure of plants to the birds. bird Aves EO:0007348 The treatment involving exposure of plant to the rice stripe necrosis virus. It is a causal agent for rice stripe necrosis disease. RSNV rice stripe necrosis virus EO:0007349 A biotic plant treatment (EO:0007357) involving exposure of a plant to a metazoan organism (animal). Animalia metazoan plant treatment EO:0007350 The treatment involving exposure of plant to the rice stripe virus. It is a causal agent for rice stripe disease. RSV rice stripe virus EO:0007356 The treatment involving exposure of plant to the rice hoja blanca virus. It is a causal agent for rice hoja blanca disease. hoja blanca rice hoja blanca tenuivirus rice hoja blanca virus EO:0007357 A plant treatment (EO:0001001) involving the application of a biotic or biological factor such as a microbe, insect, animal, or plant or a combination thereof. biotic plant treatment EO:0007358 The treatment involving exposure of plant to the rice grassy stunt virus. It is a causal agent for rice grassy stunt disease. RGSV rice grassy stunt virus EO:0007359 A plant treatment (EO:0001001) and/or study type (EO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response. plant treatment ontology treatment ontology The Plant Environment Ontology describes the treatments,growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in vitronplant structures (PO:0000004). A plant treatment is the most specific,and may be a component of a plant growing condition, and the plant study type. The broadest classes are the plant study types where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own and it may also involve instances of biotic and abiotic treatments and different growing conditions. plant experimental condition EO:0007360 The treatment involving exposure of plant to the barley yellow dwarf virus. It is a causal agent for rice Giallume disease. BYDV barley yellow dwarf virus EO:0007361 The treatment involving exposure of plant to the rice gall dwarf virus. It is a causal agent for rice gall dwarf disease. RGDV rice gall dwarf virus RGDV rice gall dwarf virus EO:0007362 The treatment involving exposure of plant to the pathogen Balansia oryzae-sativae. It is a causal agent for rice Udbatta diesase which is also called as Black Choke Disease, False Ergot Disease, Incense Rod Disease. Ephelis japonica Ephelis oryzae Balansia oryzae-sativae EO:0007363 The treatment involving exposure of plant to the pathogen Magnaporthe salvinii. It is a causal agent for rice stem rot disease and Seedling Blight (Fungal) Disease. Helminthosporium sigmoideum Helminthosporium sigmoideum var.irregulare. Leptosphaeria salvinii Nakataea sigmoidae Sclerotium oryzae Magnaporthe salvinii EO:0007364 The treatment involving exposure of plant to the pathogen Rhizoctonia oryzae. It is a causal agent for rice Sheath Spot disease such as Bordered Sheath Spot Disease, Red Sclerotial Disease and Rhizoctonia Sheath Spot Disease. Rhizoctonia zeae Waitea circinata Rhizoctonia oryzae EO:0007365 The treatment involving exposure of plant to the pathogen rice dwarf virus. It is a causal agent for rice dwarf phytoreo virus disease. RDV rice dwarf phytoreovirus rice dwarf phytoreovirus RDV rice dwarf virus EO:0007366 The treatment involving exposure of plant to the pathogen rice black streak dwarf virus. It is a causal agent for rice blast steak dwarf disease. RBSDV Rice black streak virus Rice black-streaked dwarf virus rice black-streaked dwarf fijivirus rice black-streaked dwarf virus RBSDV rice black streak dwarf virus EO:0007367 The treatment involving exposure of plant to the pest Aphelenchoides besseyi. It is a causal agent for rice white tip nematode disease. rice white-tip nematode Aphelenchoides besseyi EO:0007368 The treatment involving an exposure to above optimal water temperature, which may depend on the study type or the regional environment. warm/hot water temperature regimen EO:0007369 The treatment involving exposure of plant to the pest Meloidogyne salasi. It is a causal agent for rice root knot nematode disease. Meloidogyne salasi EO:0007370 The treatment involving exposure of plant to the pest Meloidogyne oryzae. It is a causal agent for rice root knot nematode disease. Meloidogyne oryzae EO:0007371 The treatment involving exposure of plant to the pest Meloidogyne oryzae. It is a causal agent for rice root knot nematode disease. root-knot nematode Meloidogyne javanica EO:0007372 The treatment involving exposure of plant to the pest Meloidogyne oryzae. It is a causal agent for rice root knot nematode disease. southern root-knot nematode Meloidogyne incognita EO:0007373 wound wound treatment wounding mechanical damage EO:0007374 The treatment involving exposure of plant to the pathogen Cylindrocladium scoparium. It is a causal agent for rice Sheath Net Blotch Disease. Calonectria morganii Cylindrocladium scoparium EO:0007375 The treatment involving exposure of plant to the pest Meloidogyne oryzae. It is a causal agent for rice root knot nematode disease. Meloidogyne graminicola EO:0007376 The treatment involving exposure of plant to the pathogen Pyrenochaeta oryzae. It is a causal agent for rice Sheath Blotch Disease. Pyrenochaeta oryzae EO:0007377 The treatment involving exposure of plant to the pathogen Athelia rolfsii. It is a causal agent for rice Seedling Blight (Fungal) disease. Sclerotium rolfsii Athelia rolfsii EO:0007378 A plant fungal treatment (EO:0007233) involving exposure of plant to the pathogen Sarocladium oryzae. It is a causal agent for rice Seedling Blight (Fungal) disease and/or Sheath Rot disease. Acrocylindrium oryzae Sarocladium oryzae treatment EO:0007379 The treatment involving exposure of plant to the pathogen Thanatephorus cucumeris. Rhizoctonia praticola Rhizoctonia solani Thanatephorus praticola black scurf of potato It is a causal agent for rice Sheath Blight diseases such as Brown-bordered Leaf and Sheath Spot disease and/or Oriental Leaf and Sheath Blight disease. Thanatephorus cucumeris EO:0007382 The treatment involving an exposure to wind, which may depend on regional environment. wind environment EO:0007383 The treatment involving an exposure to watering frequencies. watering regimen EO:0007384 The treatment involving an exposure to frost or freezing air temperature, which may depend on the study type or the regional environment. This temperature is either below or around 4C. freezing air temperature regimen EO:0007385 The treatment to plants or the populations grown in the regions where the land is leveled, may have bunded fields with water control, shallow. For rice flooded with anaoerobic soil during crop growth. irrigated land region EO:0007386 The treatment involving exposure of plant to the pathogen Gerlachia oryzae. It is a causal agent for a form of rice Seedling Blight (Fungal) disease. Monographella albescens rice leaf scald Gerlachia oryzae EO:0007387 The treatment involving exposure of plant to micronutrient manganese as supplement to study various types of responses. manganese nutrient regimen EO:0007388 The treatment involving exposure of plant to the pathogen Alternaria padwickii. It is a causal agent for rice seedling blight (fungal) disease and/or stackburn disease also called as Alternaria Leaf Spot Disease. Trichoconis padwickii Alternaria padwickii EO:0007389 The treatment involving exposure of plant to the pathogen Gibberella zeae. It is a causal agent for rice Scab disease. Fusarium graminearum Gibberella zeae EO:0007391 The treatment involving the plant or the populations grown in regions where the land level is slightly steep, noncontinuous flooding of variable depth and duration. Alternatingconditions of aerobic to anaerobic soil. rainfed lowland region lowland region EO:0007392 The treatment involving the plant or the populations grown in regions where the land level is steep, rarely flodded and has aerobic soil. upland region EO:0007394 The treatment involving an exposure to the conditions found in a type of biome characterized by low moisture levels and infrequent and unpredictable precipitation of rainfall. desert like region EO:0007395 river delta region EO:0007396 A treatment in terms of plant's exposure to the regional conditions found in the vicinity of the water bodies like, sea, river, lake etc. Growth conditions may include aerobic to anaerobic soil, salinity or toxicity in tidal areas. Treatment may include standing or flash flooding. deep water flooding flood prone region EO:0007397 The treatment involving exposure of plant to macronutrient phosphorus as supplement to study various types of responses. phosphorus nutrient regimen EO:0007398 The treatment involving the plant or the populations grown in regions that are adjacent to the tropics, usually roughly defined as the ranges 25-40 N and 25-40 S latitude. These areas typically have hot tropical summers, but non-tropical winters. sub-tropical region EO:0007399 The treatment involving an exposure to frost or freezing water temperature, which may depend on the study type or the regional environment. This temperature is either below or around 4C. freezing water temperature regimen EO:0007400 The treatment involving the plant or the populations grown in regions where the land is excessively dry and receives insufficient rainfall to support agriculture. arid region EO:0007401 The treatment involving the plant or the populations grown in regions where the total annual rainfall received in the range of 25-50cm (10-20 inches). semiarid region EO:0007402 A chemical treatment (EO:0007189) that involves the use of a fungal elicitor to study various types of plant responses. fungal elicitor treatment EO:0007403 A plant treatment (EO:0001001) where there is a lack of information describing the experimental conditions. In some cases, only the study type ((EO:0007231) is known, without any additional information about the treatments. unknown treatment EO:0007404 drought environment EO:0007405 Hoagland solution EO:0007406 nitrate regimen EO:0007407 An organic chemical treatment (EO:0001003) involving the application of methyl jasmonate (MeJa; CHEBI:15929). methyl jasmonate treatment EO:0007408 An organic chemical treatment (EO:0001003) involving the application of the tryptophan (Trp) analog 5-methyltryptophan (5MT; CHEBI: 52446). 5-methyltryptophan treatment EO:0007409 A growth hormone treatment (EO:0007165) involving the use of brassinosteroid (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application. brassinosteroid treatment EO:0007410 A fungal elicitor treatment (EO:0007402) that involves the use of a cerebroside elicitor to study various types of plant responses. cerebroside elicitor treatment EO:0007411 A Pseudomonas plant treatment (EO:0007144) involving the exposure to bacteria of the Pseudomonas fluorescens group. Bacillus fluorescens Bacillus fluorescens liquefaciens Bacterium fluorescen Liquidomonas fluorescens Pseudomonas fluorescens EO:0007412 The treatment involving exposure of plant to micronutrient zinc by adding ZnSO4 as supplement to study various types of responses. ZnSO4 zinc sulphate regimen EO:0007413 The treatment involving exposure of plant to micronutrient manganese by adding MnSO4 supplement to study various types of responses. MnSO4 manganese sulfate regimen EO:0007414 A chemical treatment (EO:0007189) involving exposure of plant to a peroxide to study various types of oxidative stress responses. peroxide treatment EO:0007415 A peroxide treatment (EO:0007414) involving exposure of plant to H2O2 to study various types of oxidative stress responses. hydrogen peroxide treatment EO:0007503 "The treatment involving use of 1,2-dibromoethane for mutagenesis process." [CAS:[106-93-4\], GR:pj] DBE 1,2-dibromoethane EO:0007504 "The treatment involving use of 1,2-dichloroethane for mutagenesis process." [CAS:[107-06-2\], GR:pj] DCE 1,2-dichloroethane EO:0007505 "The treatment involving use of 1,2:5,6-dibenzanthracene for mutagenesis process." [CAS:[53-70-3\], GR:pj] 1,2:5,6-dibenzanthracene EO:0007506 "The treatment involving use of 1,4-dimethanesulfonoxy-1:4-dimethylbutane for mutagenesis process." [CAS:[2514-83-2\], GR:pj] CB2348 1,4-dimethanesulfonoxy-1:4-dimethylbutane EO:0007507 "The treatment involving use of 1,4-dimethanesulfonoxybut-2-yne for mutagenesis process." [CAS:[2917-96-6\], GR:pj] CB2058 1,4-dimethanesulfonoxybut-2-yne EO:0007508 "The treatment involving use of 1,4-dimethanesulfonoxybutane for mutagenesis process." [CAS:[55-98-1\], GR:pj] CB2041 busulfan 1,4-dimethanesulfonoxybutane EO:0007509 "The treatment involving use of 1,6-dimethylsulfonoxy D-mannitol for mutagenesis process." [CAS:[1187-00-4\], GR:pj] CB2511 1,6-dimethylsulfonoxy D-mannitol EO:0007510 "The treatment involving use of 1,6-dimethylsulfonoxy L-mannitol for mutagenesis process." [CAS:[2514-83-2\], GR:pj] CB2628 1,6-dimethylsulfonoxy L-mannitol EO:0007511 "The treatment involving use of 1-amino-2-naphthol-4-sulfonic acid for mutagenesis process." [CAS:[116-63-2\], GR:pj] 1-amino-2-naphthol-4-sulfonic acid EO:0007512 "The treatment involving use of 1-bromo-2-chloroethane for mutagenesis process." [CAS:[107-04-0\], GR:pj] BCE 1-bromo-2-chloroethane EO:0007513 "The treatment involving use of 1-diethylaminoethylethylamino-4-methyl-thioxanthenone for mutagenesis process." [CAS:[479-50-5\], GR:pj] 1-diethylaminoethylethylamino-4-methyl-thioxanthenone EO:0007514 "The treatment involving use of 2,5,-bisethylene-imine-1,4-benzoquinone for mutagenesis process." [CAS:[526-62-5\], GR:pj] 2,5,-bisethylene-imine-1,4-benzoquinone EO:0007515 "The treatment involving use of 2-chloroethyl methanesulfonate for mutagenesis process." [CAS:[3570-58-9\], GR:pj] CB1506 2-chloroethyl methanesulfonate EO:0007516 "The treatment involving use of 2-fluoroethyl methanesulfonate for mutagenesis process." [CAS:[461-31-4\], GR:pj] CB1522 2-fluoroethyl methanesulfonate EO:0007517 "The treatment involving use of 2-methoxyethanol for mutagenesis process." [CAS:[109-86-4\], GR:pj] 2-methoxyethanol EO:0007518 "The treatment involving use of 5-bromouracil for mutagenesis process." [CAS:[51-20-7\], GR:pj] 5-bromouracil EO:0007519 "The treatment involving use of 5-bromouridine for mutagenesis process." [CAS:[957-75-5\], GR:pj] 5-bromouridine EO:0007520 "The treatment involving use of 7-bromomethyl 12 methyl benz or agr/anthracine for mutagenesis process." [CAS:[16238-56-5\], GR:pj] 7-bromomethyl 12 methyl benz or agr/anthracine EO:0007521 "An antibiotic treatment (EO:0007041) involving use of actinomycin D for mutagenesis process." [CAS:[50-76-0\], GR:pj, TO:moorel] actinomycin D treatment EO:0007522 "The treatment involving use of aminopterin for mutagenesis process." [CAS:[54-62-6\], GR:pj] aminopterin EO:0007523 "The treatment involving use of benzo (or agr)pyrene for mutagenesis process." [CAS:[50-32-8\], GR:pj] benzo (or agr)pyrene EO:0007524 "The treatment involving use of caffeine for mutagenesis process." [CAS:[58-08-2\], GR:pj] caffeine EO:0007525 "The treatment involving use of cisplatin for mutagenesis process." [CAS:[15663-27-1\], GR:pj] cis-dichlorodiammineplatinum(II) cisplatin EO:0007526 "The treatment involving use of colchicine for mutagenesis process." [CAS:[64-86-8\], GR:pj] colchicine EO:0007527 "The treatment involving use of cupric sulfate for mutagenesis process." [CAS:[7758-98-7\], GR:pj] cupric sulfate EO:0007528 "The treatment involving use of diepoxybutane for mutagenesis process." [CAS:[1464-53-5\], GR:pj] DEB erythritol anhydride diepoxybutane EO:0007529 "The treatment involving use of diepoxyoctane for mutagenesis process." [CAS:[2426-07-5\], GR:pj] diepoxyoctane EO:0007530 "The treatment involving use of diethyl sulfate for mutagenesis process." [CAS:[64-67-5\], GR:pj] DES diethyl sulfate EO:0007531 "The treatment involving use of dimthyl sulfate for mutagenesis process." [CAS:[67-68-5\], GR:pj] dimethyl sulfoxide EO:0007532 "The treatment involving use of DNA fragment insertion or deletion as part of mutagenesis." [CAS:[9007-49-2\], GR:pj] DNA EO:0007533 "The treatment involving use of ethyl ether for mutagenesis process." [CAS:[60-29-7\], GR:pj] ethyl ether EO:0007534 "The treatment involving use of EMS as a mutagen by damaging DNA and is used experimentally for that effect." [CAS:[62-50-0\], GR:pj] CB1528 EMS Methanesulfonic acid ethyl ester ethyl methanesulfonate EO:0007535 "The treatment involving use of ethyl nitrosourea for mutagenesis process." [CAS:[759-73-9\], GR:pj] ENU ethyl nitrosourea EO:0007536 The treatment involving use of ethylene oxide for mutagenesis process. ethylene oxide EO:0007537 "The treatment involving use of ethylenimine for mutagenesis process." [CAS:[151-56-4\], GR:pj] EI ethylenimine EO:0007538 The treatment involving use of fagaronine for mutagenesis process. fagaronine EO:0007539 "The treatment involving use of formaldehyde for mutagenesis process." [CAS:[50-00-0\], GR:pj] formaldehyde EO:0007540 The treatment involving use of boric acid for mutagenesis process. H3BO3 boric acid EO:0007541 "The treatment involving use of hesperidine for mutagenesis process." [CAS:[520-26-3\], GR:pj] hesperidine EO:0007542 "The treatment involving use of hexamethylmelamine for mutagenesis process." [CAS:[645-05-6\], GR:pj] HMM altretamine hexamethylmelamine EO:0007543 "The treatment involving use of hexamethylphosphoramide for mutagenesis process." [CAS:[680-31-9\], GR:pj] HMPA hexamethylphosphoramide EO:0007544 "The treatment involving use of hycanthon methanesulfonate for mutagenesis process." [CAS:[23255-93-8\], GR:pj] HMS hycanthon methanesulfonate EO:0007545 "The treatment involving use of ICR 100 for mutagenesis process." [CAS:[4213-45-0\], GR:pj] 2-methoxy-6-[3-(ethyl-2-chloroethyl)aminopropylamino]acridine quinacrine mustard ICR 100 EO:0007546 "The treatment involving use of ICR 170 for mutagenesis process." [CAS:[146-59-8\], GR:pj] 2-methoxy-6-dichloro-9-(3-ethyl-2-chloroethyl-aminopropylamino)acridine-dihydrochloride ICR 170 EO:0007547 "The treatment involving use of iodine for mutagenesis process." [CAS:[7553-56-2\], GR:pj] iodine EO:0007548 "The treatment involving use of Janus green B for mutagenesis process." [CAS:[2869-83-2\], GR:pj] Janus green B EO:0007549 The treatment involving use of methoxy diethylnitrosamine for mutagenesis process. methoxy diethylnitrosamine EO:0007550 "The treatment involving use of methyl methanesulfonate for mutagenesis process." [CAS:[66-27-3\], GR:pj] CB1540 MMS methyl methanesulfonate EO:0007551 "An antibiotic treatment (EO:0007551) involving use of mitomycin C for mutagenesis process." [CAS:[50-07-7\], GR:pj, TO:moorel] mitomycin C treatment EO:0007552 "The treatment involving use of mustard gas for mutagenesis process." [CAS:[505-60-2\], GR:pj] 1,1'-thiobis[2-chloroethane mustard gas EO:0007553 "The treatment involving use of N-methyl-N'-nitro-N-nitrosoguanidine for mutagenesis process." [CAS:[70-25-7\], GR:pj] MNNG NNG N-methyl-N'-nitro-N-nitrosoguanidine EO:0007554 "The treatment involving use of N-nitrosodimethylamine for mutagenesis process." [CAS:[62-75-9\], GR:pj] DMN N-nitrosodimethylamine EO:0007555 The treatment involving use of natural gas for mutagenesis process. natural gas EO:0007556 "The treatment involving use of nitrogen mustard for mutagenesis process." [CAS:[51-75-2\], GR:pj] 2-chloro-N-(2-chloroethyl)-N-methylethanamine CB1414 HN2 mechlorethamine nitrogen mustard EO:0007557 "The treatment involving use of nitrosomethyl urea for mutagenesis process." [CAS:[684-93-5\], GR:pj] MNU N-methyl-N-nitrosourea nitrosomethyl urea EO:0007558 "The treatment involving use of p-N,N-di(2-chloroethyl)aminophenylvaleric acid for mutagenesis process." [CAS:[64508-90-3\], GR:pj] CB1356 p-N,N-di(2-chloroethyl)aminophenylvaleric acid EO:0007559 "The treatment involving use of p-N,N-di-(2-chloroethyl)amino-D-phenylalanine for mutagenesis process." [CAS:[13045-94-8\], GR:pj] CB3026 p-N,N-di-(2-chloroethyl)amino-D-phenylalanine EO:0007560 "The treatment involving use of p-N,N-di-(2-chloroethyl)amino-DL-phenylalanine for mutagenesis process." [CAS:[148-82-3\], GR:pj] CB3007 melphalan p-N,N-di-(2-chloroethyl)amino-DL-phenylalanine EO:0007561 The treatment involving use of p-N,N-di-(2-chloroethyl)amino-L-phenylalanine for mutagenesis process. CB3025 p-N,N-di-(2-chloroethyl)amino-L-phenylalanine EO:0007562 "The treatment involving use of p-N,N-di-(2-chloroethyl)aminophenylbutyric acid for mutagenesis process." [CAS:[305-03-3\], GR:pj] CB1348 chlorambucil p-N,N-di-(2-chloroethyl)aminophenylbutyric acid EO:0007563 "The treatment involving use of p-N,N-di-(2-chloroethyl)aminophenylethylamine for mutagenesis process." [CAS:[58880-18-5\], GR:pj] CB3034 p-N,N-di-(2-chloroethyl)aminophenylethylamine EO:0007564 "The treatment involving use of p-p'-N,N-di(2-chloroethyl)aminophenoxyphenylalanine for mutagenesis process." [CAS:[857-95-4\], GR:pj] CB3051 p-p'-N,N-di(2-chloroethyl)aminophenoxyphenylalanine EO:0007565 "The treatment involving use of quinhydrone for mutagenesis process." [CAS:[106-34-3\], GR:pj] quinhydrone EO:0007566 "The treatment involving use of S-2-chloroethylcysteine for mutagenesis process." [CAS:[28361-96-8\], GR:pj] CB1592 S-2-chloroethylcysteine EO:0007567 "The treatment involving use of sodium bisulfite for mutagenesis process." [CAS:[7631-90-5\], GR:pj] sodium bisulfite EO:0007568 "The treatment involving use of sodium fluoride for mutagenesis process." [CAS:[7681-49-4\], GR:pj] sodium fluoride EO:0007569 The treatment involving use of styryl quinoline for mutagenesis process. CB3086 styryl quinoline EO:0007570 "The treatment involving use of sulfur mustard for mutagenesis process." [CAS:[505-60-2\], GR:pj] CB1735 sulfur mustard EO:0007571 "The treatment involving use of triaziquone for mutagenesis process." [CAS:[68-76-8\], GR:pj] triaziquone EO:0007572 "The treatment involving use of triethylenemelamine for mutagenesis process." [CAS:[51-18-3\], GR:pj] CB1246 TEM triethylenemelamine EO:0007573 "The treatment involving use of urethane for mutagenesis process." [CAS:[51-79-6\], GR:pj] urethane EO:0007574 "The treatment involving use of vinyl carbamate for mutagenesis process." [CAS:[15805-73-9\], GR:pj] vinyl carbamate EO:0007610 tritium 3-H EO:0007611 3-H-deoxycytidine EO:0007612 3-H-thymidine EO:0007613 32-P EO:0007614 agr ray EO:0007615 Bevatron irradiation EO:0007616 deuteron irradiation EO:0007617 ggr ray EO:0007618 137-Cs or ggr ray EO:0007619 radium 226-Ra or agr ray EO:0007620 60-Co or ggr ray EO:0007621 magnetic field EO:0007622 neutrons EO:0007623 252-Cf fission neutrons EO:0007624 radio wave EO:0007625 stratosphere exposure EO:0007626 supersonic-treatment EO:0007628 The treatment using X-ray either exclusively or as part of a supplemental electromagnetic radiation in the wavelength range of 5pm-10nm. X-ray EO:0007629 The treatment involving exposure of plant to molecular or ionic forms of hydrogen to study various types of responses. hydrogen regimen EO:0007630 The treatment involving exposure of plant to the pathogenic Sclerospora sp. Sclerospora spp. EO:0007631 The treatment involving exposure of plant to the pathogen Sclerophthora graminicola. It is a causal agent for downy mildew disease. Sclerospora graminicola EO:0007632 A pesticide treatment (EO:0007167) involving the application of an insecticide; a chemical entity or mixture of chemical entities. insecticide treatment EO:0007633 An herbicide treatment (EO:0007183) involving the use of an imidazolinone herbicide. This type of herbicides are taken up by plant root and leaf tissue and transported to the meristems via both phloem and xylem. The herbicide stops the activity of the enzyme, acetolactate synthase (ALS), which is involved in branch chain amino acid (valine, leucine and isoleucine) synthesis. imidazolinone treatment EO:0007634 The treatment involving exposure of plant to the pest commonly calles as cutworm. Spodoptera litura MS:1000008 ionization type MS:1000031 instrument model MS:1000070 atmospheric pressure chemical ionization MS:1000071 chemical ionization MS:1000073 electrospray ionization MS:1000074 fast atom bombardment ionization MS:1000075 matrix-assisted laser desorption ionization MS:1000078 axial ejection linear ion trap MS:1000079 fourier transform ion cyclotron resonance mass spectrometer MS:1000080 magnetic sector MS:1000081 quadrupole MS:1000082 quadrupole ion trap MS:1000083 radial ejection linear ion trap MS:1000084 time-of-flight MS:1000121 AB SCIEX instrument model MS:1000122 Bruker Daltonics instrument model MS:1000123 IonSpec instrument model MS:1000124 Shimadzu instrument model MS:1000125 Thermo Finnigan instrument model MS:1000126 Waters instrument model MS:1000139 4000 QTRAP MS:1000140 4700 Proteomics Analyzer MS:1000141 apex IV MS:1000142 apex Q MS:1000143 API 150EX MS:1000144 API 150EX Prep MS:1000145 API 2000 MS:1000146 API 3000 MS:1000147 API 4000 MS:1000148 autoflex II MS:1000149 autoflex TOF/TOF MS:1000150 Auto Spec Ultima NT MS:1000151 BioTOF II MS:1000152 BioTOF-Q MS:1000153 DELTA plusAdvantage MS:1000154 DELTAplusXP MS:1000156 esquire 4000 MS:1000157 esquire 6000 MS:1000158 explorer MS:1000159 GCT MS:1000160 HCT MS:1000161 HCTplus MS:1000162 HiRes ESI MS:1000163 HiRes MALDI MS:1000164 IsoPrime MS:1000165 IsoProbe MS:1000166 IsoProbe T MS:1000167 LCQ Advantage MS:1000168 LCQ Classic MS:1000169 LCQ Deca XP Plus MS:1000170 M@LDI L MS:1000171 M@LDI LR MS:1000172 MAT253 MS:1000173 MAT900XP MS:1000174 MAT900XP Trap MS:1000175 MAT95XP MS:1000176 MAT95XP Trap MS:1000177 microflex MS:1000178 microTOF LC MS:1000179 neptune MS:1000180 NG-5400 MS:1000181 OMEGA MS:1000182 OMEGA-2001 MS:1000183 OmniFlex MS:1000184 Platform ICP MS:1000185 PolarisQ MS:1000186 proteomics solution 1 MS:1000187 Q TRAP MS:1000188 Q-Tof micro MS:1000189 Q-Tof ultima MS:1000190 QSTAR MS:1000191 quattro micro MS:1000192 Quattro UItima MS:1000193 Surveyor MSQ MS:1000194 SymBiot I MS:1000195 SymBiot XVI MS:1000196 TEMPUS TOF MS:1000197 TRACE DSQ MS:1000198 TRITON MS:1000199 TSQ Quantum MS:1000200 ultima MS:1000201 ultraflex MS:1000202 ultraflex TOF/TOF MS:1000203 Voyager-DE PRO MS:1000204 Voyager-DE STR MS:1000227 multiphoton ionization MS:1000239 atmospheric pressure matrix-assisted laser desorption ionization MS:1000240 atmospheric pressure ionization MS:1000247 desorption ionization MS:1000254 electrostatic energy analyzer MS:1000255 flowing afterglow MS:1000257 field desorption MS:1000258 field ionization MS:1000259 glow discharge ionization MS:1000264 ion trap MS:1000271 Negative Ion chemical ionization MS:1000272 neutralization reionization mass spectrometry MS:1000273 photoionization MS:1000274 pyrolysis mass spectrometry MS:1000276 resonance enhanced multiphoton ionization MS:1000278 surface enhanced laser desorption ionization MS:1000279 surface enhanced neat desorption MS:1000284 stored waveform inverse fourier transform MS:1000288 cyclotron MS:1000291 linear ion trap MS:1000380 adiabatic ionization MS:1000381 associative ionization MS:1000382 atmospheric pressure photoionization MS:1000383 autodetachment MS:1000384 autoionization MS:1000385 charge exchange ionization MS:1000386 chemi-ionization MS:1000387 desorption/ionization on silicon MS:1000388 dissociative ionization MS:1000389 electron ionization MS:1000393 laser desorption ionization MS:1000395 liquid secondary ionization MS:1000397 microelectrospray MS:1000398 nanoelectrospray MS:1000399 penning ionization MS:1000400 plasma desorption ionization MS:1000402 secondary ionization MS:1000403 soft ionization MS:1000404 spark ionization MS:1000405 surface-assisted laser desorption ionization MS:1000406 surface ionization MS:1000407 thermal ionization MS:1000408 vertical ionization MS:1000443 mass analyzer type MS:1000446 fast ion bombardment MS:1000447 LTQ MS:1000448 LTQ FT MS:1000449 LTQ Orbitrap MS:1000450 LXQ MS:1000467 1200 series LC/MSD SL MS:1000468 6110 Quadrupole LC/MS MS:1000469 6120 Quadrupole LC/MS MS:1000470 6130 Quadrupole LC/MS MS:1000471 6140 Quadrupole LC/MS MS:1000472 6210 Time-of-Flight LC/MS MS:1000473 6310 Ion Trap LC/MS MS:1000474 6320 Ion Trap LC/MS MS:1000475 6330 Ion Trap LC/MS MS:1000476 6340 Ion Trap LC/MS MS:1000477 6410 Triple Quadrupole LC/MS MS:1000478 1200 series LC/MSD VL MS:1000483 Thermo Fisher Scientific instrument model MS:1000484 orbitrap MS:1000488 Hitachi instrument model MS:1000489 Varian instrument model MS:1000490 Agilent instrument model MS:1000491 Dionex instrument model MS:1000492 Thermo Electron instrument model MS:1000493 Finnigan MAT instrument model MS:1000494 Thermo Scientific instrument model MS:1000495 Applied Biosystems instrument model MS:1000531 software MS:1000532 Xcalibur MS:1000533 Bioworks MS:1000534 MassLynx MS:1000535 FlexAnalysis MS:1000536 Data Explorer MS:1000537 4700 Explorer MS:1000538 massWolf MS:1000539 Voyager Biospectrometry Workstation System MS:1000540 FlexControl MS:1000541 ReAdW MS:1000542 MzStar MS:1000551 Analyst MS:1000553 Trapper MS:1000554 LCQ Deca MS:1000555 LTQ Orbitrap Discovery MS:1000556 LTQ Orbitrap XL MS:1000557 LTQ FT Ultra MS:1000558 GC Quantum MS:1000578 LCQ Fleet MS:1000591 MzWiff MS:1000600 Proteios MS:1000601 ProteinLynx Global Server MS:1000602 Shimadzu Biotech instrument model MS:1000603 Shimadzu Scientific Instruments instrument model MS:1000604 LCMS-IT-TOF MS:1000605 LCMS-2010EV MS:1000606 LCMS-2010A MS:1000607 AXIMA CFR MALDI-TOF MS:1000608 AXIMA-QIT MS:1000609 AXIMA-CFR plus MS:1000610 AXIMA Performance MALDI-TOF/TOF MS:1000611 AXIMA Confidence MALDI-TOF MS:1000612 AXIMA Assurance Linear MALDI-TOF MS:1000615 ProteoWizard MS:1000622 Surveyor PDA MS:1000623 Accela PDA MS:1000632 Q-Tof Premier MS:1000634 DSQ MS:1000635 ITQ 700 MS:1000636 ITQ 900 MS:1000637 ITQ 1100 MS:1000638 LTQ XL ETD MS:1000639 LTQ Orbitrap XL ETD MS:1000640 DFS MS:1000641 DSQ II MS:1000642 MALDI LTQ XL MS:1000643 MALDI LTQ Orbitrap MS:1000644 TSQ Quantum Access MS:1000645 Element XR MS:1000646 Element 2 MS:1000647 Element GD MS:1000648 GC IsoLink MS:1000649 Exactive MS:1000650 Proteome Discoverer MS:1000651 3200 QTRAP MS:1000652 4800 Plus MALDI TOF/TOF MS:1000653 API 3200 MS:1000654 API 5000 MS:1000655 QSTAR Elite MS:1000656 QSTAR Pulsar MS:1000657 QSTAR XL MS:1000658 4800 Proteomics Analyzer MS:1000659 4000 Series Explorer Software MS:1000661 GPS Explorer MS:1000662 LightSight Software MS:1000663 ProteinPilot Software MS:1000664 TissueView Software MS:1000665 MarkerView Software MS:1000666 MRMPilot Software MS:1000667 BioAnalyst MS:1000668 Pro ID MS:1000669 Pro ICAT MS:1000670 Pro Quant MS:1000671 Pro BLAST MS:1000672 Cliquid MS:1000673 MIDAS Workflow Designer MS:1000674 MultiQuant MS:1000675 6220 Time-of-Flight LC/MS MS:1000676 6510 Quadrupole Time-of-Flight LC/MS MS:1000677 6520 Quadrupole Time-of-Flight LC/MS MS:1000678 MassHunter Data Acquisition MS:1000679 MassHunter Easy Access MS:1000680 MassHunter Qualitative Analysis MS:1000681 MassHunter Quantitative Analysis MS:1000682 MassHunter Metabolite ID MS:1000683 MassHunter BioConfirm MS:1000684 Genespring MS MS:1000685 MassHunter Mass Profiler MS:1000686 METLIN MS:1000687 Spectrum Mill for MassHunter Workstation MS:1000688 6300 Series Ion Trap Data Analysis Software MS:1000689 Agilent software MS:1000690 AB SCIEX software MS:1000691 Applied Biosystems software MS:1000692 Bruker software MS:1000693 Thermo Finnigan software MS:1000694 Waters software MS:1000695 apex ultra MS:1000696 autoflex III smartbeam MS:1000697 Bruker Daltonics HCT Series MS:1000698 HCTultra MS:1000699 HCTultra PTM MS:1000700 HCTultra ETD II MS:1000701 microflex LT MS:1000702 micrOTOF MS:1000703 micrOTOF-Q MS:1000704 micrOTOF-Q II MS:1000705 ultraflex III TOF/TOF MS:1000706 apexControl MS:1000707 BioTools MS:1000708 CLINPROT MS:1000709 CLINPROT micro MS:1000710 CLINPROT robot MS:1000711 ClinProTools MS:1000712 Compass MS:1000713 Compass for HCT/esquire MS:1000714 Compass for micrOTOF MS:1000715 Compass OpenAccess MS:1000716 Compass Security Pack MS:1000717 CompassXport MS:1000718 CompassXtract MS:1000719 DataAnalysis MS:1000720 dpControl MS:1000721 esquireControl MS:1000722 flexImaging MS:1000723 GENOLINK MS:1000724 GenoTools MS:1000725 HCTcontrol MS:1000726 micrOTOFcontrol MS:1000727 PolyTools MS:1000728 ProfileAnalysis MS:1000729 PROTEINEER MS:1000730 PROTEINEER dp MS:1000731 PROTEINEER fc MS:1000732 PROTEINEER spII MS:1000733 PROTEINEER-LC MS:1000734 ProteinScape MS:1000735 PureDisk MS:1000736 QuantAnalysis MS:1000737 spControl MS:1000738 TargetAnalysis MS:1000739 WARP-LC MS:1000743 TSQ Quantum Ultra AM MS:1000748 SSQ 7000 MS:1000749 TSQ 7000 MS:1000750 TSQ MS:1000751 TSQ Quantum Ultra MS:1000752 TOPP software MS:1000753 BaselineFilter MS:1000754 DBExporter MS:1000755 DBImporter MS:1000756 FileConverter MS:1000757 FileFilter MS:1000758 FileMerger MS:1000759 InternalCalibration MS:1000760 MapAligner MS:1000761 MapNormalizer MS:1000762 NoiseFilter MS:1000763 PeakPicker MS:1000764 Resampler MS:1000765 SpectraFilter MS:1000766 TOFCalibration MS:1000799 custom unreleased software tool MS:1000817 HyStar MS:1000818 Acquity UPLC PDA MS:1000819 Acquity UPLC FLR MS:1000854 LTQ XL MS:1000855 LTQ Velos MS:1000856 LTQ Velos ETD MS:1000870 4000 QTRAP MS:1000871 SRM software MS:1000872 MaRiMba MS:1000873 peptide attribute calculation software MS:1000874 SSRCalc MS:1000922 Skyline MS:1000923 TIQAM MS:1000925 ATAQS MS:1000931 QTRAP 5500 MS:1000932 TripleTOF 5600 MS:1001139 quantitation software name MS:1001207 Mascot MS:1001208 Sequest MS:1001209 Phenyx MS:1001455 acquisition software MS:1001456 analysis software MS:1001457 data processing software MS:1001461 greylag MS:1001475 OMSSA MS:1001476 X!Tandem MS:1001477 SpectraST MS:1001478 Mascot Parser MS:1001482 TOF/TOF 5800 MS:1001483 AB SCIEX TOF/TOF Series Explorer Software MS:1001487 ProteinExtractor MS:1001488 Mascot Distiller MS:1001489 Mascot Integra MS:1001490 Percolator MS:1001510 TSQ Vantage MS:1001533 Bruker Daltonics esquire series MS:1001534 Bruker Daltonics flex series MS:1001535 Bruker Daltonics BioTOF series MS:1001536 Bruker Daltonics micrOTOF series MS:1001537 BioTOF MS:1001538 BioTOF III MS:1001539 UltroTOF-Q MS:1001540 micrOTOF II MS:1001541 maXis MS:1001542 amaZon ETD MS:1001543 microflex LRF MS:1001544 ultrafleXtreme MS:1001545 Bruker Daltonics amaZon series MS:1001546 amaZon X MS:1001547 Bruker Daltonics maXis series MS:1001548 Bruker Daltonics solarix series MS:1001549 solariX MS:1001550 microflex II MS:1001553 autoflex II TOF/TOF MS:1001554 autoflex III TOF/TOF smartbeam MS:1001555 autoflex MS:1001556 Bruker Daltonics apex series MS:1001557 Shimadzu Biotech software MS:1001558 MALDI Solutions MS:1001561 Scaffold MS:1001582 XCMS MS:1001583 MaxQuant MS:1001585 MyriMatch MS:1001586 DirecTag MS:1001587 TagRecon MS:1001588 Pepitome MS:1001742 LTQ Orbitrap Velos MS:1001761 ACQUITY UPLC MS:1001762 ACQUITY UPLC H-Class MS:1001763 ACQUITY UPLC H-Class Bio MS:1001764 ACQUITY UPLC I-Class MS:1001765 ACQUITY UPLC Systems with 2D Technology MS:1001766 nanoACQUITY UPLC MS:1001767 nanoACQUITY UPLC System with Technology MS:1001768 nanoACQUITY UPLC with HDX Technology MS:1001769 TRIZAIC UPLC nanoTile MS:1001770 GCT Premier MS:1001771 MALDI Synapt G2 HDMS MS:1001772 MALDI Synapt G2 MS MS:1001773 MALDI Synapt G2-S HDMS MS:1001774 MALDI Synapt G2-S MS MS:1001775 MALDI Synapt HDMS MS:1001776 MALDI Synapt MS MS:1001777 Synapt G2 HDMS MS:1001778 Synapt G2 MS MS:1001779 Synapt G2-S HDMS MS:1001780 Synapt G2-S MS MS:1001781 Synapt HDMS MS:1001782 Synapt MS MS:1001783 Xevo G2 Q-Tof MS:1001784 Xevo G2 Tof MS:1001785 Xevo Q-Tof MS:1001786 3100 MS:1001787 Acquity SQD MS:1001788 Acquity TQD MS:1001789 Quattro micro GC MS:1001790 Xevo TQ MS MS:1001791 Xevo TQD MS:1001792 Xevo TQ-S MS:1001795 Empower MS:1001796 Unify MS:1001798 LECO software MS:1001799 ChromaTOF software MS:1001800 LECO instrument model MS:1001801 Pegasus HRT MS:1001802 Citius HRT MS:1001803 Pegasus MS:1001804 TruTOF MS:1001830 Progenesis LC-MS MS:1001831 SILACAnalyzer MS:1001877 ChromaTOF HRT software MS:1001878 MALDI Solutions Microbial Identification MS:1001886 SQID MS:1001908 ISQ MS:1001909 Velos Plus MS:1001910 LTQ Orbitrap Elite MS:1001911 Q Exactive MS:1001912 PinPoint PO:0000001 embryo proper PO:0000002 anther wall PO:0000003 whole plant PO:0000004 in vitro plant structure PO:0000005 cultured plant cell PO:0000006 plant protoplast PO:0000007 leaf-derived cultured plant cell PO:0000008 root-derived cultured plant cell PO:0000009 cultured plant callus PO:0000010 cultured plant embryo PO:0000011 cultured somatic plant embryo PO:0000012 apical hook PO:0000013 cauline leaf PO:0000014 rosette leaf PO:0000015 cotyledon primordium PO:0000016 lateral root primordium PO:0000017 vascular leaf primordium PO:0000018 ovule primordium PO:0000019 gynoecium primordium PO:0000021 petal primordium PO:0000025 root tip PO:0000026 primary root tip PO:0000027 lateral root tip PO:0000030 septum PO:0000031 lenticel PO:0000032 tetrad of microspores PO:0000033 fruit valve PO:0000034 vascular system PO:0000035 cotyledon vascular system PO:0000036 leaf vascular system PO:0000037 shoot apex PO:0000038 primary endosperm cell PO:0000039 shoot axis vascular system PO:0000040 adventitious root nodule PO:0000041 epidermal cork cell PO:0000042 shoot-borne root PO:0000043 crown root PO:0000044 prop root PO:0000045 embryo root PO:0000046 seminal root PO:0000047 leaf lamina epidermis PO:0000048 leaf lamina vascular system PO:0000049 leaf lamina abaxial epidermis PO:0000050 leaf lamina adaxial epidermis PO:0000051 petiole epidermis PO:0000052 petiole vascular system PO:0000053 petiole cortex PO:0000054 petal vascular system PO:0000055 bud PO:0000056 flower bud PO:0000057 inflorescence bud PO:0000058 vegetative bud PO:0000059 root initial cell PO:0000060 root cortex-endodermis initial cell PO:0000061 lateral root-cap epidermal initial cell PO:0000062 stomatal initial cell PO:0000063 leaf procambial cell PO:0000064 xylem pole pericycle cell PO:0000065 phloem pole pericycle cell PO:0000066 epithem cell PO:0000071 companion cell PO:0000074 parenchyma cell PO:0000075 collenchyma cell PO:0000076 chlorenchyma cell PO:0000077 sclerenchyma cell PO:0000078 transfer cell PO:0000079 fusiform initial cell PO:0000082 ray initial cell PO:0000084 plant sperm cell PO:0000112 shoot axis epidermis PO:0000115 socket cell PO:0000146 abscission zone PO:0000191 synergid PO:0000198 free nuclear endosperm PO:0000199 cellular endosperm PO:0000200 micropylar endosperm PO:0000201 chalazal cyst PO:0000207 nectary epidermis PO:0000223 shoot axis cortex PO:0000224 central zone PO:0000225 peripheral zone PO:0000226 rib zone PO:0000229 flower meristem PO:0000230 inflorescence meristem PO:0000232 axillary bud meristem PO:0000244 functional megaspore PO:0000245 degenerate megaspore PO:0000252 endodermis PO:0000256 root hair cell PO:0000258 root cortex PO:0000262 trichoblast PO:0000263 non-hair root epidermal cell PO:0000272 protoxylem PO:0000274 xylem fiber cell PO:0000282 trichome PO:0000283 idioblast PO:0000284 subsidiary cell PO:0000289 sieve tube element PO:0000290 tracheary element PO:0000293 guard cell PO:0000295 cambial initial cell PO:0000301 tracheid PO:0000309 nectary parenchyma PO:0000332 epidermal pavement cell PO:0000349 epidermal initial cell PO:0000351 guard mother cell PO:0000352 myrosin cell PO:0000353 passage cell PO:0000355 fiber tracheid PO:0000372 metaxylem PO:0000400 phloem mother cell PO:0000423 plant zygote PO:0000431 megasporocyte PO:0002000 stomatal complex PO:0002002 embryo basal cell PO:0002003 xylem vessel member PO:0002004 silk scar PO:0003000 transition zone PO:0003005 nodal root PO:0003011 root vascular system PO:0003015 primary root differentiation zone PO:0003016 lateral root differentiation zone PO:0003017 root cap of primary root PO:0003018 root cap of lateral root PO:0003019 central root cap of lateral root PO:0003020 lateral root cap of lateral root PO:0003021 central root cap of primary root PO:0003022 lateral root cap of primary root PO:0003023 root nodule PO:0003024 stolon PO:0004001 bulliform cell PO:0004003 phellem PO:0004006 mesophyll cell PO:0004009 silica cell PO:0004010 meristematic cell PO:0004011 initial cell PO:0004013 epidermal cell PO:0004509 glandular trichome PO:0004511 seed trichome PO:0004512 heartwood PO:0004513 sapwood PO:0004514 growth ring PO:0004515 early wood PO:0004516 late wood PO:0004517 growth ring boundary PO:0004518 bark PO:0004519 phloem fiber cell PO:0004520 libriform fiber cell PO:0004521 septate fiber cell PO:0004522 outer vascular cambium PO:0004523 included vascular cambium PO:0004524 included phloem PO:0004525 secondary xylem parenchyma cell PO:0004526 axial secondary xylem parenchyma cell PO:0004527 ray secondary xylem parenchyma cell PO:0004528 upright ray secondary xylem parenchyma cell PO:0004529 procumbent ray secondary xylem parenchyma cell PO:0004530 tile cell PO:0004531 sheath cell PO:0004532 secondary xylem parenchyma PO:0004533 axial secondary xylem parenchyma PO:0004534 ray secondary xylem parenchyma PO:0004535 fruit placenta PO:0004536 fruit pedicel PO:0004537 nucellar plant embryo PO:0004538 indeterminate nodule PO:0004539 determinate nodule PO:0004540 fruit columella PO:0004542 rhizome PO:0004543 shoot axis tuber PO:0004544 root-borne shoot system PO:0004545 shoot-borne shoot system PO:0004546 epicormic shoot system PO:0004547 subterranean tuber PO:0004548 aerial tuber PO:0004700 anther wall middle layer PO:0004701 short shoot PO:0004702 long shoot PO:0004703 carpel primordium PO:0004704 sepal primordium PO:0004705 stamen primordium PO:0004707 fruit dehiscence zone PO:0004708 scutellar node PO:0004709 axillary bud PO:0004710 axillary flower bud PO:0004711 axillary inflorescence bud PO:0004712 axillary vegetative bud PO:0004713 terminal bud PO:0004714 terminal flower bud PO:0004715 terminal inflorescence bud PO:0004716 terminal vegetative bud PO:0004717 long cell PO:0004718 short cell PO:0004721 paraclade cortex PO:0004722 pedicel cortex PO:0004723 sepal vascular system PO:0004724 hypocotyl-root junction PO:0004725 abaxial side of leaf primordium PO:0004726 adaxial side of leaf primordium PO:0005001 basal axillary shoot system PO:0005002 cauline axillary shoot PO:0005003 shoot axis trichome PO:0005004 shoot node PO:0005005 shoot internode PO:0005006 articulated laticifer PO:0005010 anther septum PO:0005011 anther dehiscence zone PO:0005012 pedicel vascular system PO:0005013 hypocotyl epidermis PO:0005014 embryo cortex PO:0005015 embryo endodermis PO:0005017 flower vascular system PO:0005018 stamen vascular system PO:0005019 carpel vascular system PO:0005020 vascular bundle PO:0005021 sepal margin PO:0005022 ovary wall PO:0005023 abaxial epidermis of ovary PO:0005024 adaxial epidermis of ovary PO:0005025 middle layer of ovary wall PO:0005026 root giant cell PO:0005027 root syncytium cell PO:0005028 inflorescence vascular system PO:0005029 root primordium PO:0005039 primary thickening meristem PO:0005040 root pith PO:0005041 shoot axis pith PO:0005043 secondary phloem PO:0005046 periderm PO:0005047 root periderm PO:0005048 shoot axis periderm PO:0005050 phelloderm PO:0005051 hypodermis PO:0005052 plant callus PO:0005057 shoot axis hypodermis PO:0005058 shoot axis endodermis PO:0005059 root endodermis PO:0005060 leaf endodermis PO:0005352 xylem PO:0005360 aleurone layer PO:0005415 endosperm parenchyma PO:0005417 phloem PO:0005421 parenchyma PO:0005423 collenchyma PO:0005426 chlorenchyma PO:0005427 sclerenchyma PO:0005597 cambium PO:0005598 vascular cambium PO:0005599 cork cambium PO:0005645 leaf mesophyll PO:0005647 spongy mesophyll PO:0005648 palisade mesophyll PO:0005656 portion of secretory tissue PO:0005660 hydathode PO:0005661 salt gland PO:0005665 resin canal PO:0005669 oil gland PO:0005679 epidermis PO:0005702 aerenchyma PO:0005708 cortex PO:0005772 exodermis PO:0005848 secondary xylem PO:0005849 primary xylem PO:0006000 caryopsis hull PO:0006001 phyllome PO:0006002 lower glume PO:0006003 scale leaf PO:0006004 upper glume PO:0006005 carpel anlagen PO:0006006 anther wall primary parietal cell layer PO:0006007 anther wall secondary parietal cell layer PO:0006008 anther wall inner secondary parietal cell layer PO:0006009 anther wall outer secondary parietal cell layer PO:0006010 primary parietal cell PO:0006011 lateral leaf vein PO:0006012 leaf collar PO:0006013 juice sac PO:0006014 male archesporial cell PO:0006015 female archesporial cell PO:0006016 leaf epidermis PO:0006017 helobial endosperm PO:0006018 leaf adaxial epidermis PO:0006019 leaf abaxial epidermis PO:0006020 lateral root apical meristem PO:0006021 adventitious root apical meristem PO:0006022 bundle sheath extension PO:0006023 bundle sheath PO:0006024 parenchyma sheath PO:0006025 mestome sheath PO:0006032 lemma awn PO:0006033 paleal apiculus PO:0006034 leaflet margin PO:0006035 shoot epidermis PO:0006036 root epidermis PO:0006039 adventitious root epidermis PO:0006040 sepal epidermis PO:0006041 petal epidermis PO:0006042 velamen PO:0006043 integument epidermis PO:0006044 inner integument epidermis PO:0006045 outer integument epidermis PO:0006048 seed coat epidermis PO:0006049 scutellum epidermis PO:0006050 exotesta PO:0006051 endotesta PO:0006052 petal abaxial epidermis PO:0006053 petal adaxial epidermis PO:0006054 sepal abaxial epidermis PO:0006055 sepal adaxial epidermis PO:0006056 cotyledon epidermis PO:0006057 cotyledon abaxial epidermis PO:0006058 cotyledon adaxial epidermis PO:0006060 filament epidermis PO:0006061 stigma epidermis PO:0006062 style epidermis PO:0006063 ovary epidermis PO:0006065 hypocotyl endodermis PO:0006066 petiole parenchyma PO:0006068 sepal parenchyma PO:0006069 petal parenchyma PO:0006070 mesophyll PO:0006071 petal mesophyll PO:0006072 sepal mesophyll PO:0006073 intercalary meristem PO:0006075 primary phloem PO:0006076 metaphloem PO:0006077 protophloem PO:0006079 shoot meristem PO:0006081 primary root apical meristem PO:0006082 abaxial protoderm PO:0006083 adaxial protoderm PO:0006084 portion of transfusion tissue PO:0006085 root meristem PO:0006088 primary sporogenous cell PO:0006089 anther primordium PO:0006090 organogenic callus PO:0006091 embryogenic callus PO:0006109 pith PO:0006200 fascicular cambium PO:0006201 interfascicular cambium PO:0006202 interfascicular region PO:0006203 pericycle PO:0006204 sporocyte PO:0006205 spongy mesophyll cell PO:0006206 palisade mesophyll cell PO:0006207 exodermal passage cell PO:0006208 endodermal passage cell PO:0006210 protoderm PO:0006211 separation layer PO:0006212 protective layer PO:0006213 root aerenchyma PO:0006214 stem aerenchyma PO:0006215 leaf aerenchyma PO:0006216 internal phloem PO:0006218 exotegmen PO:0006219 endotegmen PO:0006220 central endosperm PO:0006221 articulated laticifer cell PO:0006222 non-articulated laticifer cell PO:0006307 root procambium PO:0006308 root lateral meristem PO:0006309 tassel spikelet PO:0006310 tassel floret PO:0006311 tassel sessile spikelet PO:0006312 tassel pedicellate spikelet PO:0006313 lower floret of pedicellate spikelet of tassel PO:0006314 upper floret of pedicellate spikelet of tassel PO:0006315 lower floret of sessile spikelet of tassel PO:0006316 upper floret of sessile spikelet of tassel PO:0006319 spikelet pedicel PO:0006320 ear spikelet PO:0006321 primary inflorescence branch PO:0006322 second order inflorescence branch PO:0006323 tassel inflorescence branch PO:0006324 central spike of tassel inflorescence PO:0006325 inflorescence node PO:0006326 inflorescence internode PO:0006327 spikelet meristem PO:0006328 spikelet pair meristem PO:0006330 gynophore PO:0006331 seed raphe PO:0006332 seed funicle PO:0006333 seed chalaza PO:0006336 seed obturator PO:0006338 embryo leaf PO:0006339 juvenile vascular leaf PO:0006340 adult vascular leaf PO:0006341 primary shoot system PO:0006342 infructescence PO:0006343 axillary shoot system PO:0006344 shoot lateral meristem PO:0006346 leaf intercalary meristem PO:0006347 stem intercalary meristem PO:0006348 ear pedicellate spikelet PO:0006349 ear sessile spikelet PO:0006350 upper floret of pedicellate spikelet of ear PO:0006351 lower floret of sessile spikelet of ear PO:0006352 upper floret of sessile spikelet of ear PO:0006353 lower floret of pedicellate spikelet of ear PO:0006354 ear floret PO:0006358 tassel spikelet pair meristem PO:0006360 ear spikelet pair meristem PO:0006362 embryo shoot apical meristem PO:0006367 glume of ear spikelet PO:0006368 glume of tassel spikelet PO:0006369 lower glume of ear spikelet PO:0006370 upper glume of tassel spikelet PO:0006371 upper glume of ear spikelet PO:0006372 lower glume of tassel spikelet PO:0006375 ear apical meristem PO:0006376 tassel apical meristem PO:0006377 tassel spikelet meristem PO:0006378 ear spikelet meristem PO:0006379 tassel spikelet rachilla PO:0006380 ear spikelet rachilla PO:0006385 lower glume of pedicellate spikelet of tassel PO:0006386 lower glume of sessile spikelet of tassel PO:0006387 upper glume of sessile spikelet of tassel PO:0006388 upper glume of pedicellate spikelet of tassel PO:0006389 rachilla of sessile spikelet of tassel PO:0006390 rachilla of pedicellate spikelet of tassel PO:0006415 pedicel of ear spikelet PO:0006416 pedicel of tassel spikelet PO:0006417 tassel peduncle PO:0006418 ear peduncle PO:0006435 rachilla of pedicellate spikelet of ear PO:0006436 rachilla of sessile spikelet of ear PO:0006437 lower glume of pedicellate spikelet of ear PO:0006438 lower glume of sessile spikelet of ear PO:0006439 upper glume of pedicellate spikelet of ear PO:0006440 upper glume of sessile spikelet of ear PO:0006501 leaf abscission zone PO:0006502 flower abscission zone PO:0006503 fruit abscission zone PO:0006504 leaf trichome PO:0006505 central spike of ear inflorescence PO:0008001 fruit distal end PO:0008002 fruit proximal end PO:0008003 fruit vascular system PO:0008005 fruit nucellus PO:0008006 nucellar epidermis PO:0008007 nucellar projection PO:0008008 modified aleurone PO:0008009 abaxial nucellar projection PO:0008010 adaxial nucellar projection PO:0008011 embryo vascular system PO:0008012 stigma vascular system PO:0008013 anther vascular system PO:0008014 filament vascular system PO:0008015 hypocotyl vascular system PO:0008016 vegetative shoot apical meristem PO:0008017 leaf sheath pulvinus PO:0008018 transition vascular leaf PO:0008019 leaf lamina base PO:0008020 central zone of the leaf lamina PO:0008021 tertiary leaf vein PO:0008022 quaternary leaf vein PO:0008023 higher order leaf vein PO:0008024 petiole proximal end PO:0008025 central zone of the petiole PO:0008026 petiole distal end PO:0008027 petiole adaxial epidermis PO:0008028 reproductive shoot apical meristem PO:0008029 petiole abaxial epidermis PO:0008030 trichome cell PO:0008035 plerome PO:0008036 periblem PO:0008039 stem base PO:0008040 lodicule primordium PO:0008041 stem internode elongation zone PO:0008042 stem internode differentiation zone PO:0008047 scutellar vascular system PO:0008048 scutellar epithelium PO:0009000 pulvinus PO:0009001 fruit PO:0009002 plant cell PO:0009005 root PO:0009006 shoot system PO:0009007 portion of plant tissue PO:0009008 plant organ PO:0009009 plant embryo PO:0009010 seed PO:0009011 plant structure PO:0009013 portion of meristem tissue PO:0009015 portion of vascular tissue PO:0009017 inflorescence branch pulvinus PO:0009018 basal endosperm transfer cell PO:0009020 meristem L1 PO:0009021 meristem L2 PO:0009022 meristem L3 PO:0009025 vascular leaf PO:0009026 sporophyll PO:0009027 megasporophyll PO:0009028 microsporophyll PO:0009029 stamen PO:0009030 carpel PO:0009031 sepal PO:0009032 petal PO:0009033 tepal PO:0009034 flower bract PO:0009035 nectary PO:0009036 lodicule PO:0009037 lemma PO:0009038 palea PO:0009039 glume PO:0009040 sterile lemma PO:0009041 fertile lemma PO:0009042 prophyll PO:0009043 bracteole PO:0009044 perigynium PO:0009045 involucral bract PO:0009046 flower PO:0009047 stem PO:0009049 inflorescence PO:0009051 spikelet PO:0009052 pedicel PO:0009053 peduncle PO:0009054 inflorescence bract PO:0009055 bract PO:0009056 flower nectary PO:0009057 extrafloral nectary PO:0009058 perianth PO:0009059 corolla PO:0009060 calyx PO:0009061 androecium PO:0009062 gynoecium PO:0009063 epicalyx PO:0009064 receptacle PO:0009065 hypanthium PO:0009066 anther PO:0009067 filament PO:0009068 connective PO:0009069 anther theca PO:0009071 anther wall tapetum PO:0009072 plant ovary PO:0009073 stigma PO:0009074 style PO:0009077 staminode PO:0009078 pistillode PO:0009080 spikelet rachilla PO:0009081 inflorescence branch PO:0009082 spikelet floret PO:0009084 pericarp PO:0009085 exocarp PO:0009086 endocarp PO:0009087 mesocarp PO:0009088 seed coat PO:0009089 endosperm PO:0009090 aril PO:0009100 involucre PO:0009101 long lateral tassel branch PO:0009102 short tassel branch PO:0009103 short tassel branch meristem PO:0009104 long lateral tassel branch meristem PO:0009105 inflorescence branch meristem PO:0009106 tassel meristem PO:0009107 tassel inflorescence branch meristem PO:0009108 inflorescence apical meristem PO:0009109 ear meristem PO:0009110 ear inflorescence branch meristem PO:0009111 petiole pulvinus PO:0019018 plant embryo axis PO:0019022 arilloid PO:0019023 strophiole PO:0019024 seed operculum PO:0019026 tracheid bar PO:0020001 ovary placenta PO:0020002 anther wall endothecium PO:0020003 plant ovule PO:0020004 anther wall exothecium PO:0020005 placentoid PO:0020006 funicle PO:0020019 megaspore PO:0020020 nucellus PO:0020021 integument PO:0020022 inner integument PO:0020023 outer integument PO:0020024 endothelium PO:0020026 chalaza PO:0020027 raphe PO:0020028 antiraphe PO:0020029 obturator PO:0020030 cotyledon PO:0020031 radicle PO:0020032 plumule PO:0020033 coleoptile PO:0020034 coleorhiza PO:0020035 epicotyl PO:0020036 epiblast PO:0020037 mesocotyl PO:0020038 petiole PO:0020039 leaf lamina PO:0020040 leaf base PO:0020041 stipule PO:0020042 simple leaf PO:0020043 compound leaf PO:0020044 hyperphyll PO:0020045 pinnate leaf PO:0020046 palmate leaf PO:0020047 microsporocyte PO:0020048 microspore PO:0020049 leaflet PO:0020050 petiolule PO:0020051 stipel PO:0020054 bud scale leaf PO:0020055 leaf rachis PO:0020056 tegmen PO:0020057 testa PO:0020058 perisperm PO:0020060 caruncle PO:0020061 coma PO:0020062 elaiosome PO:0020063 hilum PO:0020090 embryo sac central cell PO:0020093 antipodal cell PO:0020094 plant egg cell PO:0020096 egg apparatus PO:0020097 generative cell PO:0020099 vegetative cell PO:0020100 hypocotyl PO:0020102 portion of transmitting tissue PO:0020103 flag leaf PO:0020104 leaf sheath PO:0020105 ligule PO:0020106 leaf sheath auricle PO:0020108 suspensor PO:0020109 embryo hypophysis PO:0020110 scutellum PO:0020121 lateral root PO:0020122 inflorescence axis PO:0020123 root cap PO:0020124 root stele PO:0020126 tassel inflorescence PO:0020127 primary root PO:0020128 leaf margin PO:0020130 central root cap PO:0020131 lateral root cap PO:0020132 columella root cap cell PO:0020133 columella root cap initial cell PO:0020135 root differentiation zone PO:0020136 ear inflorescence PO:0020137 leaf apex PO:0020138 leaf lamina vein PO:0020139 leaf midvein PO:0020140 secondary leaf vein PO:0020141 stem node PO:0020142 stem internode PO:0020144 apical meristem PO:0020145 lateral meristem PO:0020147 root apical meristem PO:0020148 shoot apical meristem PO:0020149 quiescent center PO:0025001 cardinal organ part PO:0025002 basal root PO:0025003 tuber axillary shoot PO:0025004 plant axis PO:0025005 organ margin PO:0025006 gamete PO:0025007 collective plant organ structure PO:0025008 petal margin PO:0025009 leaf lamina margin PO:0025010 petiole margin PO:0025011 bract margin PO:0025012 cotyledon margin PO:0025013 prophyll margin PO:0025014 scale leaf margin PO:0025015 tepal margin PO:0025016 sporophyll margin PO:0025017 plant spore PO:0025018 phyllome margin PO:0025019 carpel margin PO:0025020 stamen margin PO:0025021 collective tepal structure PO:0025022 collective leaf structure PO:0025023 collective phyllome structure PO:0025024 branch node PO:0025025 root system PO:0025026 embryo sac cell PO:0025028 embryo plant cell PO:0025029 shoot axis PO:0025030 ground tissue cell PO:0025031 laticifer cell PO:0025032 hydroid PO:0025033 leptoid PO:0025034 leaf PO:0025035 storage parenchyma PO:0025036 tuber storage parenchyma PO:0025037 fruit storage parenchyma PO:0025038 subterranean tuber storage parenchyma PO:0025039 aerial tuber storage parenchyma PO:0025040 shoot axis tuber axillary vegetative bud PO:0025041 aerial tuber axillary vegetative bud PO:0025042 subterranean tuber axillary vegetative bud PO:0025043 shoot axis tuber periderm PO:0025044 aerial tuber periderm PO:0025045 subterranean tuber periderm PO:0025046 shoot axis tuber epidermis PO:0025047 aerial tuber epidermis PO:0025048 subterranean tuber epidermis PO:0025049 subterranean tuber interfascicular region PO:0025050 tuber interfascicular region PO:0025051 aerial tuber interfascicular region PO:0025052 tuber pith PO:0025053 subterranean tuber pith PO:0025054 aerial tuber pith PO:0025055 tuber cortex PO:0025056 aerial tuber cortex PO:0025057 subterranean tuber cortex PO:0025058 perimedullary zone PO:0025059 portion of ground tissue PO:0025060 lamina PO:0025061 tuber perimedullary zone PO:0025062 aerial tuber perimedullary zone PO:0025063 subterranean tuber perimedullary zone PO:0025064 shoot axis perimedullary zone PO:0025065 root perimedullary zone PO:0025066 stalk PO:0025067 seed storage parenchyma PO:0025068 shoot axis tuber axillary bud meristem PO:0025069 aerial tuber axillary bud meristem PO:0025070 subterranean tuber axillary bud meristem PO:0025071 terminal reproductive bud PO:0025072 axillary reproductive bud PO:0025073 branch PO:0025074 embryo sac PO:0025075 non-vascular leaf PO:0025076 axillary strobilus bud PO:0025077 terminal strobilus bud PO:0025078 placenta PO:0025079 aerial tuber axillary shoot PO:0025080 branch internode PO:0025081 subterranean tuber axillary shoot PO:0025082 reproductive shoot system PO:0025083 strobilus PO:0025084 reproductive bud PO:0025085 strobilus bud PO:0025088 gynoecium ridge PO:0025092 dehiscence zone PO:0025093 spore capsule annulus PO:0025094 sporangium PO:0025095 root parenchyma PO:0025096 carpel epidermis PO:0025097 stamen epidermis PO:0025098 bract trichome PO:0025099 embryo plant structure PO:0025100 shoot internode elongation zone PO:0025101 branch internode elongation zone PO:0025102 shoot internode differentiation zone PO:0025103 branch internode differentiation zone PO:0025104 first order inflorescence axis PO:0025105 third order inflorescence branch PO:0025106 fourth order inflorescence branch PO:0025107 fifth order inflorescence branch PO:0025108 sixth order inflorescence branch PO:0025109 seventh order inflorescence branch PO:0025110 eighth order inflorescence branch PO:0025111 ninth or higher order inflorescence branch PO:0025112 primary infructescence branch PO:0025113 second order infructescence branch PO:0025114 third order infructescence branch PO:0025115 fourth order infructescence branch PO:0025116 fifth order infructescence branch PO:0025119 plant axis differentiation zone PO:0025120 antheridium sperm cell PO:0025121 pollen sperm cell PO:0025122 archegonium egg cell PO:0025123 embryo sac egg cell PO:0025124 multicellular plant gametangium PO:0025125 antheridium PO:0025126 archegonium PO:0025127 primordium PO:0025128 phyllome primordium PO:0025129 petiole lamina PO:0025130 cigar leaf PO:0025131 plant anatomical entity PO:0025134 inflorescence branch crown PO:0025135 cigar leaf lamina abaxial epidermis PO:0025136 free tepal PO:0025137 fused tepal PO:0025138 fused collective tepal structure PO:0025139 phyllome apex PO:0025140 phyllome base PO:0025141 phyllome tip PO:0025142 leaf tip PO:0025143 tepal apex PO:0025144 petal apex PO:0025145 sepal apex PO:0025146 petal base PO:0025147 sepal base PO:0025148 tepal base PO:0025149 petal tip PO:0025150 sepal tip PO:0025151 tepal tip PO:0025152 peduncle epidermis PO:0025153 peduncle trichome PO:0025154 bract apex PO:0025155 bract base PO:0025156 bract tip PO:0025157 phyllome epidermis PO:0025158 bract epidermis PO:0025159 bract abaxial epidermis PO:0025160 bract adaxial epidermis PO:0025162 multicellular trichome PO:0025163 multicellular trichome branch cell PO:0025164 root epidermal cell PO:0025165 shoot epidermal cell PO:0025166 papilla cell PO:0025167 leaf papilla cell PO:0025168 stigma papilla cell PO:0025169 prickle PO:0025170 root prickle PO:0025171 shoot axis prickle PO:0025172 thorn PO:0025173 spine leaf PO:0025174 spine stipule PO:0025175 leaf prickle PO:0025176 stem trichome PO:0025177 branch trichome PO:0025178 stem epidermis PO:0025179 branch epidermis PO:0025180 plant axis elongation zone PO:0025181 root elongation zone PO:0025182 sepal trichome PO:0025183 leaf stomatal complex PO:0025184 tepal epidermis PO:0025185 leaf lamina stomatal complex PO:0025186 phyllome trichome PO:0025187 petal trichome PO:0025188 tepal trichome PO:0025189 petiole stomatal complex PO:0025190 leaf abaxial stomatal complex PO:0025191 leaf adaxial stomatal complex PO:0025192 tepal abaxial epidermis PO:0025193 tepal adaxial epidermis PO:0025194 root nodule meristem PO:0025195 pollen tube cell PO:0025196 basal endosperm transfer layer PO:0025197 stele PO:0025198 shoot axis stele PO:0025199 branch stele PO:0025200 stem stele PO:0025201 megasporangium PO:0025202 microsporangium PO:0025203 pericarp vascular bundle PO:0025204 rhizome internode PO:0025205 shoot system vascular system PO:0025206 phyllome vascular system PO:0025207 tepal vascular system PO:0025208 carpel trichome PO:0025209 stamen trichome PO:0025210 leaf abaxial trichome PO:0025211 leaf adaxial trichome PO:0025212 leaf pavement cell PO:0025213 leaf abaxial pavement cell PO:0025214 leaf adaxial pavement cell PO:0025215 phyllome stomatal complex PO:0025216 bract stomatal complex PO:0025217 carpel stomatal complex PO:0025218 petal stomatal complex PO:0025219 sepal stomatal complex PO:0025220 stamen stomatal complex PO:0025221 tepal stomatal complex PO:0025222 reproductive shoot apex PO:0025223 vegetative shoot apex PO:0025227 tetrad of megaspores PO:0025228 valve PO:0025229 spore capsule valve PO:0025230 columella PO:0025231 spore capsule columella PO:0025233 portion of embryo plant tissue PO:0025236 phyllome guard cell PO:0025237 leaf guard cell PO:0025240 second order inflorescence PO:0025241 second order infructescence PO:0025242 infructescence axis PO:0025243 infructescence branch PO:0025244 first order infructescence axis PO:0025245 persistent sepal PO:0025246 persistent tepal PO:0025247 persistent stamen PO:0025248 pseudostem PO:0025249 leaf sheath epidermis PO:0025250 leaf sheath abaxial epidermis PO:0025251 leaf sheath adaxial epidermis PO:0025252 sixth order infructescence branch PO:0025253 seventh order infructescence branch PO:0025254 eighth order infructescence branch PO:0025255 ninth or higher order infructescence branch PO:0025256 lateral root elongation zone PO:0025257 primary root elongation zone PO:0025258 procambial cell PO:0025259 leaf procambium PO:0025260 shoot axis procambium PO:0025261 pericycle cell PO:0025262 ovary septum PO:0025267 fruit replum PO:0025268 fruit septum PO:0025269 collective organ part structure PO:0025272 ovary replum PO:0025273 stem procambium PO:0025274 branch procambium PO:0025275 procambium PO:0025276 shoot procambium PO:0025277 pollen sac PO:0025278 rhizome scale leaf PO:0025279 megagametophyte PO:0025280 microgametophyte PO:0025281 pollen PO:0025282 archegonium megagametophyte PO:0025283 antheridium microgametophyte PO:0025284 embryo apical cell PO:0025285 callus parenchyma cell PO:0025286 embryo coleoptile PO:0025287 seedling coleoptile PO:0025288 embryo coleorhiza PO:0025289 seedling coleorhiza PO:0025290 embryo hypocotyl PO:0025291 seedling hypocotyl PO:0025292 embryo epicotyl PO:0025293 seedling epicotyl PO:0025294 embryo mesocotyl PO:0025295 seedling mesocotyl PO:0025296 embryo radicle PO:0025297 seedling radicle PO:0025298 fruit operculum PO:0025300 embryo hypocotyl-root junction PO:0025301 seedling hypocotyl-root junction PO:0025302 somatic plant embryo PO:0025303 zygotic plant embryo PO:0025304 cultured zygote-derived plant embryo PO:0025305 microspore-derived cultured plant embryo PO:0025306 sporangium wall PO:0025307 microsporangium wall PO:0025308 megasporangium wall PO:0025309 microsporangium endothecium PO:0025310 megasporangium endothecium PO:0025311 microsporangium exothecium PO:0025312 megasporangium exothecium PO:0025313 tapetum PO:0025314 microsporangium tapetum PO:0025315 megasporangium tapetum PO:0025316 axillary hair PO:0025317 axillary hair terminal cell PO:0025318 axillary hair base PO:0025319 axillary hair basal cell PO:0025320 cotyledonary node rhizoid PO:0025321 cotyledonary node PO:0025323 flower fascicle PO:0025324 banner petal PO:0025325 wing petal PO:0025326 keel petal PO:0025327 keel PO:0025328 unifacial vascular leaf PO:0025329 calyptra calyx PO:0025330 calyptra corolla PO:0025331 ray flower PO:0025332 disk flower PO:0025333 ensiform vascular leaf PO:0025334 terete vascular leaf PO:0025335 phyllode leaf PO:0025336 transition phyllode leaf PO:0025348 phyllome lamina vein PO:0025349 awn PO:0025350 palea awn PO:0025351 glume awn PO:0025352 tubercle PO:0025353 areole bud PO:0025354 cladode PO:0025355 corm PO:0025356 bulb PO:0025357 pneumatophore PO:0025358 pneumatorhiza PO:0025359 sorus PO:0025360 ceonosorus PO:0025361 leaf tendril PO:0025362 leaflet tendril PO:0025363 leaf apex tendril PO:0025364 branch tendril PO:0025365 stem apex tendril PO:0025366 leaf rachis tendril PO:0025367 prophyll tendril PO:0025378 arillode PO:0025390 free ending veinlet PO:0025391 phyllome lamina areole PO:0025392 leaf lamina areole PO:0025393 pappus PO:0025394 pappus element PO:0025395 floral organ PO:0025396 phyllome lamina PO:0025400 phyllome adaxial meristem PO:0025401 leaf adaxial meristem PO:0025402 phyllome abaxial meristem PO:0025403 leaf abaxial meristem PO:0025404 phyllome marginal meristem PO:0025405 leaf marginal meristem PO:0025406 sieve element PO:0025407 plant fiber cell PO:0025408 primary vascular tissue PO:0025409 secondary vascular tissue PO:0025410 axial system PO:0025411 ray system PO:0025412 albuminous cell PO:0025413 primary leaf vein PO:0025414 secondary thickening meristem PO:0025415 sieve cell PO:0025416 sieve tube PO:0025417 xylem vessel PO:0025418 sclerid cell PO:0025419 septate fiber tracheid PO:0025420 septate libriform fiber cell PO:0025421 septate phloem fiber cell PO:0025422 gelatinous fiber cell PO:0025428 phyllome plate meristem PO:0025429 leaf plate meristem PO:0025430 phyllome anlagen PO:0025431 vascular leaf anlagen PO:0025432 cotyledon anlagen PO:0025433 root anlagen PO:0025434 petiole vascular bundle PO:0025435 shoot axis cork cambium PO:0025436 root cork cambium PO:0025437 shoot axis vascular cambium PO:0025438 root vascular cambium PO:0025439 cambial zone PO:0025440 shoot axis cambial zone PO:0025441 root cambial zone PO:0025442 stem secondary thickening meristem PO:0025443 root secondary thickening meristem PO:0025444 primary xylem tracheary element PO:0025445 secondary xylem tracheary element PO:0025446 primary xylem tracheid PO:0025447 secondary xylem tracheid PO:0025448 primary xylem vessel member PO:0025449 secondary xylem vessel member PO:0025450 primary xylem vessel PO:0025451 secondary xylem vessel PO:0025452 primary phloem sieve element PO:0025453 secondary phloem sieve element PO:0025454 primary phloem sieve cell PO:0025455 primary phloem sieve tube element PO:0025456 secondary phloem sieve cell PO:0025457 secondary phloem sieve tube element PO:0025458 transfer companion cell PO:0025459 ordinary companion cell PO:0025460 intermediary companion cell PO:0025461 early wood tracheary element PO:0025462 late wood tracheary element PO:0025470 embryo cotyledon PO:0025471 seedling cotyledon PO:0025472 reaction wood PO:0025473 compression wood PO:0025474 tension wood PO:0025476 tuberous root tuber PO:0025477 floral organ primordium PO:0025478 androecium primordium PO:0025479 basal root primordium PO:0025480 shoot-borne root primordium PO:0025481 leaflet primordium PO:0025482 bract anlagen PO:0025483 lodicule anlagen PO:0025484 petal anlagen PO:0025485 sepal anlagen PO:0025486 stamen anlagen PO:0025487 bract primordium PO:0025488 flower bract primordium PO:0025489 inflorescence bract primordium PO:0025490 plant ovary ovule PO:0025491 ovuliferous scale ovule PO:0025492 pericyclic lateral root primordium PO:0025493 non-pericyclic lateral root primordium PO:0025494 pericyclic lateral root PO:0025495 non-pericyclic lateral root PO:0025496 multi-tissue plant structure PO:0025497 collective plant structure PO:0025498 cardinal part of multi-tissue plant structure PO:0025499 sepal epidermis giant cell PO:0025509 archegonium central cell PO:0025510 archegonium initial cell PO:0025511 petal spur PO:0025512 corolla spur PO:0025513 organ lamina PO:0025514 phyllome lamina lobe PO:0025515 phyllome lamina tooth PO:0025516 phyllome lamina crena PO:0025517 leaf lamina lobe PO:0025518 leaf lamina tooth PO:0025519 leaf lamina crena PO:0025520 leaf lamina intramarginal vein PO:0025521 unicellular plant gametangium PO:0025522 tuber PO:0025523 tuberous root PO:0025524 ventral canal cell PO:0025525 spermatogenous cell PO:0025526 body cell PO:0025533 prothallial cell PO:0025534 adventitious shoot axis PO:0025535 multicellular trichome tip PO:0025537 unicellular trichome PO:0025541 bundle sheath cell PO:0025542 bundle sheath chlorenchyma cell PO:0025543 tapetum cell PO:0025544 microsporangium tapetum cell PO:0025545 anther wall tapetum cell PO:0025546 accessory paraclade PO:0025547 cauline paraclade PO:0025548 rosette paraclade PO:0025549 trichome tip PO:0025550 trichome apex PO:0025551 multicellular trichome apex PO:0025552 centarch protoxylem PO:0025553 mesarch protoxylem PO:0025554 exarch protoxylem PO:0025555 root system exarch protoxylem PO:0025556 shoot system exarch protoxylem PO:0025557 endarch protoxylem PO:0025558 monarch protoxylem PO:0025559 diarch protoxylem PO:0025560 triarch protoxylem PO:0025561 tetrarch protoxylem PO:0025562 pentarch protoxylem PO:0025563 polyarch protoxylem PO:0025564 megasporangium tapetum cell PO:0025569 free petal PO:0025575 protoxylem tracheary element PO:0025576 metaxylem tracheary element PO:0025577 epicalyx bract PO:0025580 fused perianth PO:0025581 fused corolla PO:0025582 fused calyx PO:0025583 fused petal PO:0025584 fused sepal PO:0025587 free sepal PO:0030001 chloronema cell PO:0030002 caulonema cell PO:0030003 protonema PO:0030004 chloronema PO:0030005 caulonema PO:0030007 meristematic apical cell PO:0030008 root meristematic apical cell PO:0030009 shoot meristematic apical cell PO:0030010 shoot axis meristematic apical cell PO:0030011 leaf meristematic apical cell PO:0030012 vascular leaf meristematic apical cell PO:0030013 non-vascular leaf meristematic apical cell PO:0030014 gametophyte meristematic apical cell PO:0030015 sporophyte meristematic apical cell PO:0030016 seta meristematic apical cell PO:0030018 gametophore PO:0030019 gametophore meristematic apical cell PO:0030020 gametophore axis PO:0030021 gametophore branch PO:0030022 gametophore stem PO:0030023 gametophore axis meristematic apical cell PO:0030024 vascular shoot axis meristematic apical cell PO:0030025 thallus meristematic apical cell PO:0030026 gametophore bud PO:0030027 thallus PO:0030028 perigonial bract PO:0030029 sporophyte foot PO:0030030 perichaetal bract PO:0030031 gametophyte perianth PO:0030032 seta PO:0030033 antheridiophore PO:0030034 archegoniophore PO:0030035 antheridium stalk PO:0030036 archegonium stalk PO:0030037 spore capsule calyptra PO:0030038 venter PO:0030039 archegonium neck PO:0030040 sporangium base PO:0030041 sporangium theca PO:0030042 peristome PO:0030043 peristome tooth PO:0030044 spore capsule operculum PO:0030045 stereid PO:0030046 protonema meristematic apical cell PO:0030047 hydrome PO:0030048 leptome PO:0030049 sporangium wall endothecium PO:0030050 stereome PO:0030051 central strand PO:0030052 antheridium jacket layer cell PO:0030053 antheridium jacket layer PO:0030054 epiphragm PO:0030055 pseudopodium PO:0030056 archesporial cell PO:0030057 alar cell PO:0030058 brachycyte PO:0030059 tmema cell PO:0030060 gametophore axillary hair PO:0030061 tmema PO:0030062 gametophore axillary hair terminal cell PO:0030063 gametophore axillary hair base PO:0030064 gametophore axillary hair basal cell PO:0030065 archegonium neck canal cell PO:0030067 protonema side branch initial cell PO:0030068 epidermal rhizoid initial cell PO:0030069 paraphyllium PO:0030070 paraphysis PO:0030071 epidermal rhizoid PO:0030072 costa PO:0030073 exothecium PO:0030074 archesporium PO:0030075 antheridium head PO:0030076 archegonium head PO:0030077 protonemal side branch rhizoid initial cell PO:0030078 rhizoid PO:0030079 protonemal rhizoid PO:0030080 rhizoid meristematic apical cell PO:0030081 caulonema meristematic apical cell PO:0030082 chloronema meristematic apical cell PO:0030083 gametophore bud initial cell PO:0030084 amphithecium PO:0030085 protosporangium endothecium PO:0030086 protonema sub-apical initial cell PO:0030087 non-vascular leaf initial cell Species classification and nomenclature of a plant in the physiological tree. An element of a taxonomy for classifying life forms. oboInOwl:ObsoleteClass owl:Thing Point of entry in recursive pipeline Entry A List of Data objects from EDAM. List 1 An aggregation of intermediate pipeline elements Aggregate Point of exit in recursive pipeline Exit 1 1 Intermediate result in recursive pipeline Intermediate 1 1 2DE gel images with labeled spots GelDataForSpots Description of the used protocol to analyse the Element AnalysisProtocol 1 Aggregate of molecular material (ex: pool of spots picked from different gels; pool of protein extracted from different samples) BioAggregate 1 1 1 A sample of biological material obtained by performing an Operation over a BioSubject BioSample Living material that can be subject to experimental manipulations Biosubjects may be submitted to an experimental treatment which may have a certain duration (e.g. whole plant growing in a particular location, cells in a particular growth medium, organelles) or are produced by the fractioning of another experimental subject (e.g. extraction of particular tissues, organelles), BioSubject Data concerning cytologic measures such as the estimated number of cells of a certain type CytologyData DNAExtraction A protocol to produce data from a MaterialEntity. DataAcquisitionProtocol 1 aggregate of data belonging to the same experiment DataAggregate DataProcessing 1 Data obtained for a sample. DataAnnotation Data which can be subject to data processing steps DataSubject age, maturation (ex: adult tree when produces fruits), leaves (ex: totaly expanded leaves) DevelopmentalStage detailed electrphoresis protocol Should specify the type of gel, the buffer used, strip size, enzymatic activities, etc Electrophoresis detailed enzymatic activity protocol (buffer, substract, detection, temperature) Should specify enzyme and protocol/method EnzimaticActivity GrowthEnvironment 1 1 Non-living material obtained from an experimental subject via an extraction protocol Non-living material obtained from living material (e.g. nucleic acids, metabolites) ExtractedSample ExtractionProtocol FractioningProtocol 1 1 A single spot from a 2D gel electrophoresis GelSpot ImageAcquisitionProtocol Pictures, fotos or images of any kind used to obtained information ImageData Segment of a structured image data characterized by the coordinates of an image region ImageSegment 1 1 Protein annotation from the analysis of mass spectrometry data and cross-referencing with external databases MSAnnotation MSDataAnnotationProcessing 1 1 1 Mass Spectrometry information of a polypeptidic fragment MSProteinData 1 1 1 MassSpectrometry A PhysicalSubject or a BioSubject object from which information can be extracted through a DataAcquisitionProtocol. MaterialEntity MechanicalFractioning non-induced protein modification considered for protein identifation NaturalProteinModification detailed PCR protocol (buffer, enzyme, temperature) PCR PhenomicAcquisitionProtocol PhenomicData 1 Aggregate of different physical entities (ex: pool of leaves from different clones) PhysicalAggregate 1 1 A material sample obtained from an physical subject through an analysis protocol Physical samples are obtained from a physical subject (e,g, living organisms, cultured cells, electrophoresis gels) by using an analysis protocol (e.g. PCR, enzimatic activity, electrophoresis) PhysicalSample PhysicalSampleFractioning Material that can be subject to an AnalysisProtocol PhysicalSubject 1 1 Primary data (in digital format) obtained from a physical subject through a data acquisition protocol. It consists of an instantaneous observation of measurable quantities about the physical subject. PrimaryData ProteinAcquisitionProtocol 1 ProteinData ProteinExtraction A polypeptidic fragment identified in the context of MassSpectrometry, and resulting from the digestion of a larger polypeptide by a known protease ProteinFragment protein modification considered for protein identification ProteinModification RNAExtraction 1 A physical sample which is secondarily obtained from a PhysicalSample through the application of a PhysicalSampleFractioning e.g. an individual spot from a 2D gel SecondaryPhysicalSample BandExtraction 1 1 An individual pertaining to a species. Specimen SpotExtraction 1 Image segment corresponding to a spot of a 2D electrophoresis gel SpotSegment 1 1 Pictures or images of any kind used to organized and labeled to produce information StructuredImageData induced protein modification considered for protein identifation SyntheticProteinModification FixationProtocol BioAnalyzerProtocol The result of an Electropherogram analysis containing a RNA Integrety Number (RIN) and the corresponding profile image. ElectropherogramData Information refering the bioanalyzer analysis BioAnalyzerData RNALabChip SequencingProtocol 1 SequenceData 1 1 SangerData 1 1 NGSData NGSProtocol SangerProtocol hiSeqProtocol NGSDataAnnotationProcessing CellCountingProtocol 1 ProteinModificationList 1 1 NGSDataAnnotation 1 1 DataSample DataAnnotationProcessing 1 1 SangerDataAnnotation SangerDataAnnotationProcessing 1 ProteinSample 1 RNASample 1 DNASample 1 1 GelDataForBands BandSegment 1 1 GelBand ExperimentalTreatment 1 EnvironmentalChange 1 1 PCRResult 1 1 1 1 1 1 1 1 Gel 1 1 EnzymaticActivityResult 1 GelForSpots GelForBands ProteolyticEnzyme MassSpectrometryInstrument InstrumentType part of the exact date (year/month/day/hour/minute/second) of any event can be annotated duration of an event in (year/month/day/hour/minute/second) To answer the need for a workflow representing a sequence of data transformations, a high-level process ontology was defined, denoted Pipeline Patterns (PP) ontology (see Figure 2). The PP ontology represents high-level terms, that will later on be mapped onto the terms of the PEAO ontology, and the manner in which they can relate. Every concept is generically a Data (class from EDAM), which can be further specified as an Entry (P:00002) or an Exit (P:00009). All Entries can be subjected to an Operation (class from EDAM) producing an Intermediate (P:00010). An Intermediate has a TemporalEntity associated to represent its time of creation. Some Entries are specifically of the type Exit, meaning that they will represent concepts that exit the current category and be passed to the next one on the workflow. Additionally, in order to permit the treatment of a set of objects as a single entity, this high-level ontology considers the concept of List (P:00004) and more specifically an Aggregate (P:00005), containing a set of Data or Entry, respectively. The concept Intermediate is an Entry, allowing for the successive application of an operation to an Element. This is particularly useful in the case of the application of sequential set of operations.