<?xml version="1.0"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:xml="http://www.w3.org/XML/1998/namespace"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:metadata="http://data.bioontology.org/metadata/">
    <Ontology/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://data.bioontology.org/metadata/prefixIRI -->

    <AnnotationProperty rdf:about="http://data.bioontology.org/metadata/prefixIRI"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://bioontology.org/ontologies/tma-minimal#affixed_to_slide -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#affixed_to_slide">
        <inverseOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide_includes_core"/>
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_on_slide"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:comment>This property describes the relationship between a core and the slide it has been affixed to.</rdfs:comment>
        <rdfs:label>affixedToSlide</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#block_includes_core -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#block_includes_core">
        <inverseOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#included_in_block"/>
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:comment>This property describes the relationship between a block and the cores it contains.</rdfs:comment>
        <rdfs:label>blockIncludesCore</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#cut_from_block -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#cut_from_block">
        <inverseOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#includes_slide"/>
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:comment>This property describes refer from a slide to the block it was cut from.</rdfs:comment>
        <rdfs:label>cutFromBlock</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#derived_from_core -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#derived_from_core">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_on_slide"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:comment>This property describes the relationship between a core section on a slide and the core it is derived from.</rdfs:comment>
        <rdfs:label>derivedFromCore</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#donor_block -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#donor_block">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:label>donorBlock</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#included_in_block -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#included_in_block">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:comment>This property describes the relationship between a core and the block containing the core.</rdfs:comment>
        <rdfs:label>includedInBlock</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#included_in_tma -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#included_in_tma">
        <inverseOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#includes_block"/>
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#tma"/>
        <rdfs:comment>This property is used to refer from a block to the TMA that includes it.</rdfs:comment>
        <rdfs:label>includedInTMA</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#includes_block -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#includes_block">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#tma"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:comment>This property describes the relationship between a TMA and the blocks it contains.</rdfs:comment>
        <rdfs:label>includesBlock</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#includes_slide -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#includes_slide">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:comment>This property describes the relationship between a block and the slides that are derived from it.</rdfs:comment>
        <rdfs:label>includesSlide</rdfs:label>
    </ObjectProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#slide_includes_core -->

    <ObjectProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#slide_includes_core">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:range rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_on_slide"/>
        <rdfs:comment>This property describes the relationship between a slide and the core sections it contains.</rdfs:comment>
        <rdfs:label>slideIncludesCore</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Data properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://bioontology.org/ontologies/tma-minimal#assay -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#assay">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
        <rdfs:comment>The type of special study applied to this slide, e.g. FISH, Immunohistochemistry, in situ PCR, BLOT, regular stain, other.</rdfs:comment>
        <rdfs:label>assay</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#clinical_annotation -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#clinical_annotation">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
        <rdfs:comment>The clinical information of the patient from which the core was taken.</rdfs:comment>
        <rdfs:label>clinicalAnnotation</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#control -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#control">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
        <rdfs:comment>the quality control review of the test performed on the slide. adequate/not adequate/no QA</rdfs:comment>
        <rdfs:label>control</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#core_spacing -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#core_spacing">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
        <rdfs:comment>the spacings between cores in the TMA block expressed in millimeters (mm); this may be a single value or a series of numbers, each should be expressed as a decimal number with one decimal place, e.g. 3.5</rdfs:comment>
        <rdfs:label>coreSpacing</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#diagnosis -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#diagnosis">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
        <rdfs:comment>Use this property to describe pathalogical diagnosis of original source or drill site.</rdfs:comment>
        <rdfs:label>diagnosis</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#drill_site -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#drill_site">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
        <rdfs:comment>The location in the donor block from which the core was taken. (Coordinates or description)</rdfs:comment>
        <rdfs:label>drillSite</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#level -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#level">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#integer"/>
        <rdfs:comment>the level of the block for this slide, e.g. 25</rdfs:comment>
        <rdfs:label>slideLevel</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#location -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#location">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
        <rdfs:comment>Please note that the domain of this property is core_in_block.  Therefore, this property
		can apply to instances of either core_in_block or core_on_slide (since core_on_slide is a subclass
		of core_in_block).</rdfs:comment>
        <rdfs:label>location</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#protocol -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#protocol">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#experimental_component"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
        <rdfs:label>Can be a character string or a URI</rdfs:label>
        <rdfs:label>protocol</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#report_link -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#report_link">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
        <rdfs:comment>This is the identifier used by an instance of class Block to link to a unique report.  This will be the report accession number or some derivation of the report accession number.</rdfs:comment>
        <rdfs:label>reportLink</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#repository -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#repository">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#repository_product"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
        <rdfs:comment>Name of the institution providing the core.  Should use unique identifier specified by HL7.</rdfs:comment>
        <rdfs:label>repository</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#result -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#result">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_on_slide"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
        <rdfs:comment>the result of a test procedure</rdfs:comment>
        <rdfs:label>result</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#size -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#size">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
        <rdfs:comment>the diameter of a core or tissue, measured in millimeters</rdfs:comment>
        <rdfs:label>diameter</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#status -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#status">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#block"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
        <rdfs:comment>the current status if known for the block; Production, Retired, Exhausted, or Unknown</rdfs:comment>
        <rdfs:label>blockStatus</rdfs:label>
    </DatatypeProperty>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#thickness -->

    <DatatypeProperty rdf:about="http://bioontology.org/ontologies/tma-minimal#thickness">
        <rdfs:domain rdf:resource="http://bioontology.org/ontologies/tma-minimal#slide"/>
        <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
        <rdfs:comment>the thickness of the section expressed as a real number in microns</rdfs:comment>
        <rdfs:label>sectionThickness</rdfs:label>
    </DatatypeProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://bioontology.org/ontologies/tma-minimal#block -->

    <Class rdf:about="http://bioontology.org/ontologies/tma-minimal#block">
        <rdfs:subClassOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#experimental_component"/>
        <rdfs:subClassOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#repository_product"/>
        <metadata:prefixIRI rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tma:block</metadata:prefixIRI>
        <rdfs:label>block</rdfs:label>
    </Class>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#core_in_block -->

    <Class rdf:about="http://bioontology.org/ontologies/tma-minimal#core_in_block">
        <rdfs:subClassOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#experimental_component"/>
        <rdfs:subClassOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#repository_product"/>
        <metadata:prefixIRI rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tma:core_in_block</metadata:prefixIRI>
        <rdfs:label>coreInBlock</rdfs:label>
    </Class>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#core_on_slide -->

    <Class rdf:about="http://bioontology.org/ontologies/tma-minimal#core_on_slide">
        <rdfs:subClassOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#core_in_block"/>
        <metadata:prefixIRI rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tma:core_on_slide</metadata:prefixIRI>
        <rdfs:label>coreOnSlide</rdfs:label>
    </Class>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#experimental_component -->

    <Class rdf:about="http://bioontology.org/ontologies/tma-minimal#experimental_component">
        <rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
        <metadata:prefixIRI rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tma:experimental_component</metadata:prefixIRI>
        <rdfs:comment>This is an abstract parent class.  This class includes items that can be used in an experiment.</rdfs:comment>
        <rdfs:label>experimentalComponent</rdfs:label>
    </Class>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#repository_product -->

    <Class rdf:about="http://bioontology.org/ontologies/tma-minimal#repository_product">
        <rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
        <metadata:prefixIRI rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tma:repository_product</metadata:prefixIRI>
        <rdfs:comment>This is an abstract parent class.  This class represents any item that is produced by a repository.</rdfs:comment>
        <rdfs:label>repositoryProduct</rdfs:label>
    </Class>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#slide -->

    <Class rdf:about="http://bioontology.org/ontologies/tma-minimal#slide">
        <rdfs:subClassOf rdf:resource="http://bioontology.org/ontologies/tma-minimal#experimental_component"/>
        <metadata:prefixIRI rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tma:slide</metadata:prefixIRI>
        <rdfs:label>slide</rdfs:label>
    </Class>
    


    <!-- http://bioontology.org/ontologies/tma-minimal#tma -->

    <Class rdf:about="http://bioontology.org/ontologies/tma-minimal#tma">
        <rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
        <metadata:prefixIRI rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tma:tma</metadata:prefixIRI>
        <rdfs:comment>This class collects the blocks used to create a TMA.</rdfs:comment>
        <rdfs:label>tma</rdfs:label>
    </Class>
</rdf:RDF>



<!-- Generated by the OWL API (version 4.5.18) https://github.com/owlcs/owlapi -->

