14:01:2019 13:00 WC 1.4 Jonathan Karr <karr@mssm.edu> distributed under the MIT License (https://github.com/KarrLab/wc_lang/blob/master/LICENSE) definition database_cross_reference has_exact_synonym has_obo_format_version has_obo_namespace Clusters of Orthologous Groups WC WC:COG Clusters of orthologous groups WC:COG CTCF Binding Site WC WC:CTCFBindingSite CTCF Binding Site WC:CTCFBindingSite DNA SBO:0000251 WC WC:DNA DNA WC:DNA DNAABox WC WC:DNAABox DNAABox WC:DNAABox DNA binding Type WC WC:DNABinding DNA binding Type WC:DNABinding DNA Binding Site WC WC:DNABindingSite DNA Binding Site WC:DNABindingSite DNA BindingSite Lon WC WC:DNABindingSiteLon DNA BindingSite Lon WC:DNABindingSiteLon DNA Cleavage WC WC:DNACleavage DNA Cleavage WC:DNACleavage DNA damage reaction WC WC:DNADamage DNA damage reaction WC:DNADamage DNA Ligation WC WC:DNALigation DNA Ligation WC:DNALigation DNA Methylation WC WC:DNAMethylation DNA Methylation WC:DNAMethylation DNA Methylation site WC WC:DNAMethylationSite DNA Methylation site WC:DNAMethylationSite DNA Polymerization WC WC:DNAPolymerization DNA Polymerization WC:DNAPolymerization DNA repair reaction WC WC:DNARepairreaction DNA repair reaction WC:DNARepairreaction DNA Restriction Modification WC WC:DNARestrictionModification DNA Restriction Modification WC:DNARestrictionModification Ion WC WC:Ion Ion WC:Ion RNA SBO:0000250 WC WC:RNA RNA WC:RNA RNA processing WC WC:RNAprocessing RNA processing WC:RNAprocessing TF Binding Site WC WC:TFBindingSite TF Binding Site WC:TFBindingSite TRNAAminoacylation reaction WC WC:TRNAAminoacylationReaction tRNA aminoacylation reaction WC:TRNAAminoacylationReaction TRNASynthClassI WC WC:TRNASynthClassI TRNASynthClassI WC:TRNASynthClassI TRNASynthClassIB WC WC:TRNASynthClassIB TRNASynthClassIB WC:TRNASynthClassIB TRNASynthClassII WC WC:TRNASynthClassII TRNASynthClassII WC:TRNASynthClassII TRNASynthClassII WC WC:TRNASynthClassIIComplex TRNASynthClassII WC:TRNASynthClassIIComplex TRNA Transfer reaction WC WC:TRNATransferReaction tRRNA transfer reaction WC:TRNATransferReaction Active WC WC:active Active WC:active activity level WC WC:activityLevel activity level WC:activityLevel Protein Modification Adduction WC WC:adduction protein Modification Adduction WC:adduction Amino Acid WC WC:aminoAcid Amino Acid WC:aminoAcid Amino Acid Metabolism and Transport WC WC:aminoAcidMetabolismTransport Amino Acid Metabolism and Transport WC:aminoAcidMetabolismTransport Approximation WC WC:approximation approximation WC:approximation Article BRO:JouRNAl_Article IAO:0000013 WC WC:article article WC:article anti-sense RNA WC WC:asRNA anti-sense RNA WC:asRNA Assumption WC WC:assumption assumption WC:assumption Author foaf:Person WC WC:author author WC:author DNA Damage Base Alkylation WC WC:baseAlkylation DNA Damage Base Alkylation WC:baseAlkylation DNA Damage Base Amination WC WC:baseAmination DNA Damage Base Amination WC:baseAmination DNA Damage Base Ethylation WC WC:baseEthylation DNA Damage Base Ethylation WC:baseEthylation Base Excision Repair WC WC:baseExcisionRepair Base Excision Repair WC:baseExcisionRepair DNA Damage Base Glucosyl Transfer WC WC:baseGlucosylTransfer DNA Damage Base Glucosyl Transfer WC:baseGlucosylTransfer DNA Damage Base Methylation WC WC:baseMethylation DNA Damage Base Methylation WC:baseMethylation DNA Damage Base Reduction WC WC:baseReduction DNA Damage Base Reduction WC:baseReduction Book BRO:Book WC WC:book book WC:book boolean WC WC:boolean boolean WC:boolean Carbohydrate Metabolism and Transport WC WC:carbohydrateMetabolismTransport Carbohydrate Metabolism and Transport WC:carbohydrateMetabolismTransport Carbohydrate Sugar WC WC:carbohydrateSugar Carbohydrate Sugar WC:carbohydrateSugar Carbohydrate Sugar Phosphate WC WC:carbohydrateSugarPhosphate Carbohydrate Sugar Phosphate WC:carbohydrateSugarPhosphate Carboxy Acid WC WC:carboxyAcid Carboxy Acid WC:carboxyAcid Cell Cycle Control and Mitosis WC WC:cellCycleControlMitosis Cell Cycle Control and Mitosis WC:cellCycleControlMitosis Cell Motility WC WC:cellMotility Cell Motility WC:cellMotility Cell Wall Membrane Envelope Biogenesis WC WC:cellWallMembraneEnvelopBiogenesis Cell Wall Membrane Envelope Biogenesis WC:cellWallMembraneEnvelopBiogenesis Change change COMODI:Change WC WC:change change WC:change Chemical reaction WC WC:chemicalReaction Chemical reaction WC:chemicalReaction Chromatin Structure Dynamics WC WC:chromatinStructureDynamics Chromatin Structure Dynamics WC:chromatinStructureDynamics Chromosome Condensation WC WC:chromosomeCondensation Chromosome Condensation WC:chromosomeCondensation chromosomeFeature Type WC WC:chromosomeFeature chromosomeFeature WC:chromosomeFeature Coenzyme Metabolites WC WC:coenzymeMetabolites Coenzyme Metabolites WC:coenzymeMetabolites compartment SBO:0000289 WC WC:compartment compartment WC:compartment complexes WC WC:complex complexes WC:complex Complex Formation Type WC WC:complexFormation complexFormation WC:complexFormation Computation WC WC:computation computation WC:computation Conclusion SEPIO:0000000 SEPIO:0000001 WC WC:conclusion conclusion WC:conclusion Copy WC WC:copy copy WC:copy Cytoskeleton WC WC:cytoskeleton Cytoskeleton WC:cytoskeleton dFBA objective WC WC:dFBA dFBA terms WC:dFBA Decision WC WC:decision decision WC:decision Dephosphorylation Activating Protein Modification WC WC:dephosphorylationActivating dephosphorylation Activating Protein Modification WC:dephosphorylationActivating Dipeptide WC WC:dipeptide Dipeptide WC:dipeptide Distal WC WC:distal Distal WC:distal double Strand DNA Binding Type WC WC:dsDNA double Strand DNA Binding Type WC:dsDNA Energy Production and Conversion WC WC:energyProductionConversion Energy Production and Conversion WC:energyProductionConversion Enhancer WC WC:enhancer Enhancer WC:enhancer environment WC WC:environment environment WC:environment Evidence SEPIO:0000002 WC WC:evidence evidence WC:evidence FattyAcylAcp WC WC:fattyAcylAcpComplex FattyAcylAcp WC:fattyAcylAcpComplex float WC WC:float float WC:float FtsZ Polymerization WC WC:ftsZPolymerization FtsZ Polymerization WC:ftsZPolymerization Function SBO:0000064 WC WC:function function WC:function FunctionalDNAABox WC WC:functionalDNAABox FunctionalDNAABox WC:functionalDNAABox gene WC WC:gene gene WC:gene geneWiz Prediction WC WC:geneWizPrediction geneWiz Prediction WC:geneWizPrediction Glycation Inactivating Protein Modification WC WC:glycationInactivating glycation Inactivating Protein Modification WC:glycationInactivating Homologous Recombination WC WC:homologousRecombination Homologous Recombinationon WC:homologousRecombination Phosphorylation Inactivating Protein Modification WC WC:inactivating phosphorylation Inactivating Protein Modification WC:inactivating Inactive WC WC:inactive Inactive WC:inactive Inorganic Ion Transport WC WC:inorganicIonTransport Inorganic Ion Transport WC:inorganicIonTransport Insertion COMODI:Insertion WC WC:insertion insertion WC:insertion integer WC WC:integer integer WC:integer intergenic RNA WC WC:intergenic intergenic RNA WC:intergenic Intracellular Trafficing Secretion WC WC:intracellularTrafficingSecretion Intracellular Trafficing Secretion WC:intracellularTrafficingSecretion Ion transport reaction WC WC:ionTransportReaction Ion transport reaction WC:ionTransportReaction Protein Modification Ligation WC WC:ligation protein Modification Ligation WC:ligation Lipid Metabolism WC WC:lipidMetabolism Lipid Metabolism WC:lipidMetabolism lipo Protein Signal Sequence Type WC WC:lipoProtein lipo Protein Signal Sequence WC:lipoProtein loci WC WC:loci loci WC:loci Long Structural Region WC WC:longStructuralRegion Long Structural Region WC:longStructuralRegion messenger RNA WC WC:mRNA messenger RNA WC:mRNA Macromolecular Complexation WC WC:macromolecularComplexation Macromolecular Complexation WC:macromolecularComplexation Merge WC WC:merge merge WC:merge Metabolism WC WC:metabolism Metabolism WC:metabolism Metabolite SBO:0000299 WC WC:metabolite metabolite WC:metabolite mixed RNA WC WC:mixed mixed RNA WC:mixed model WC WC:model model WC:model Modified base transport reaction WC WC:modifiedBaseTransportReaction Modified base transport reaction WC:modifiedBaseTransportReaction Modified Nucleobase WC WC:modifiedNucleobase Modified Nucleobase WC:modifiedNucleobase Move COMODI:Move WC WC:move move WC:move non-coding RNA WC WC:ncRNA non-coding RNA WC:ncRNA Nuclear Structure WC WC:nuclearStructure Nuclear Structure WC:nuclearStructure Nucleobase WC WC:nucleobase Nucleobase WC:nucleobase Nucleotide Excision Repair WC WC:nucleotideExcisionRepair Nucleotide Excision Repair WC:nucleotideExcisionRepair Nucleotide Metabolism and Transport WC WC:nucleotideMetabolismTransport Nucleotide Metabolism and Transport WC:nucleotideMetabolismTransport observable WC WC:observable observable WC:observable observation IAO:0000111 SEPIO:0000149 WC WC:observation observation WC:observation Open Chromatin Region WC WC:openChromatinRegion Open Chromatin Region WC:openChromatinRegion oxidation Inactivating Protein Modification WC WC:oxidationInactivating oxidation Inactivating Protein Modification WC:oxidationInactivating parameters SBO:0000002 WC WC:parameter parameters WC:parameter DNA Damage Photooxidation WC WC:photoOxidation DNA Damage Photooxidation WC:photoOxidation Poised WC WC:poised Poised WC:poised Post Translational Modification WC WC:postTranslationalModification Post Translational Modification WC:postTranslationalModification preprint WC WC:preprint preprint WC:preprint Proceedings BRO:Conference_Proceeding WC WC:proceedings proceedings WC:proceedings process BFO:0000015 WC WC:process process WC:process Promoter WC WC:promoter Promoter WC:promoter Promoter Flanking Region WC WC:promoterFlankingRegion Promoter Flanking Region WC:promoterFlankingRegion protein WC WC:protein protein WC:protein proteinModification WC WC:proteinModification Protein Modification WC:proteinModification protein modification reaction WC WC:proteinModificationReaction protein modification reaction WC:proteinModificationReaction provenance terms SEPIO:0000058 WC WC:provenance provenance WC:provenance Proximal WC WC:proximal Proximal WC:proximal pseudogene WC WC:pseudogene pseudogene WC:pseudogene ribosomal RNA WC WC:rRNA ribosomal RNA WC:rRNA DNA Damage Radiation Induced Base Oxidation WC WC:radiationInducedBaseOxidation DNA Damage Radiation Induced Base Oxidation WC:radiationInducedBaseOxidation reaction WC WC:reaction reaction WC:reaction Reactive Oxygen Species WC WC:reactiveOxygenSpecies reactive oxygen species WC:reactiveOxygenSpecies reference BRO:Information_Resource WC WC:reference reference WC:reference regulationType WC WC:regulationType regulationType WC:regulationType regulatory element Type WC WC:regulatoryElement regulatory element Type WC:regulatoryElement Replication WC WC:replication Replication WC:replication Replication Initiation WC WC:replicationInitiation Replication Initiation WC:replicationInitiation Replication Repair WC WC:replicationRepair Replication Repair WC:replicationRepair Repressed WC WC:repressed Repressed WC:repressed Revert WC WC:revert revert WC:revert Ribonucleotide Biphosphate WC WC:ribonucleotideBiphosphate Ribonucleotide Biphosphate WC:ribonucleotideBiphosphate Ribonucleotide Monophosphate WC WC:ribonucleotideMonophosphate Ribonucleotide Monophosphate WC:ribonucleotideMonophosphate Ribonucleotide Triphosphate WC WC:ribonucleotideTriphosphate Ribonucleotide Triphosphate WC:ribonucleotideTriphosphate Ribosome Assembly WC WC:ribosomeAssembly Ribosome Assembly WC:ribosomeAssembly small RNA WC WC:sRNA small RNA WC:sRNA Secondary Structure WC WC:secondaryStructure Secondary Structure WC:secondaryStructure secretory Signal Sequence Type WC WC:secretory secretory Signal Sequence Type WC:secretory signal Sequence Type WC WC:signalSequence signal Sequence Type WC:signalSequence signal sequence type WC WC:signalSequenceType signal sequence type WC:signalSequenceType Signal Transduction WC WC:signalTransduction Signal Transduction WC:signalTransduction species WC WC:species species WC:species DNA Damage Spontaneous Base Deamination WC WC:spontaneousBaseDeamination DNA Damage Spontaneous Base Deamination WC:spontaneousBaseDeamination DNA Damage Spontaneous Base Loss WC WC:spontaneousBaseLoss DNA Damage Spontaneous Base Loss WC:spontaneousBaseLoss single Strand DNA Binding Type WC WC:ssDNA single Strand DNA Binding Type WC:ssDNA DNA Damage Strand Break WC WC:strandBreak DNA Damage Strand Break WC:strandBreak string WC WC:string string WC:string submodel WC WC:submodel submodel WC:submodel transport RNA WC WC:tRNA transport RNA WC:tRNA taxon WC WC:taxon taxon WC:taxon Thesis BRO:Thesis WC WC:thesis thesis WC:thesis Tranlsation WC WC:tranlsation Tranlsation WC:tranlsation transcription WC WC:transcription transcription WC:transcription transcription WC WC:transcriptionComplexFormation transcription WC:transcriptionComplexFormation transcription unit WC WC:transcriptionUnit transcription unit WC:transcriptionUnit Translation WC WC:translationComplexFormation Translation WC:translationComplexFormation Transport reaction WC WC:transportReaction Transport reaction WC:transportReaction Update COMODI:Update WC WC:update update WC:update DNA Damage UvB Photodimerization WC WC:uvbPhotodimerization DNA Damage UvB Photodimerization WC:uvbPhotodimerization python class of ValueType WC WC:valueType value type WC:valueType Vitamin WC WC:vitamin Vitamin WC:vitamin website BRO:Website WC WC:website website WC:website Representation of an entity used in whole-cell modeling WC WC Whole-cell modeling entities WC 3D compartment WC WC:3D_compartment 3D compartment :3D:compartment Dirichlet distribution WC WC:Dirichlet_distribution Dirichlet distribution :Dirichlet:distribution Gumbel distribution WC WC:Gumbel_distribution Gumbel distribution :Gumbel:distribution K_i SBO:0000261 WC WC:K_i K_i :K:i K_m SBO:0000027 WC WC:K_m K_m :K:m Laplace distribution WC WC:Laplace_distribution Laplace distribution :Laplace:distribution Michaelis-Menten rate law SBO:0000029 WC WC:Michaelis_Menten_rate_law Michaelis-Menten rate law :Michaelis:Menten:rate:law Pareto distribution WC WC:Pareto_distribution Pareto distribution :Pareto:distribution Poisson distribution WC WC:Poisson_distribution Poisson distribution :Poisson:distribution Rayleigh distribution WC WC:Rayleigh_distribution Rayleigh distribution :Rayleigh:distribution Vonmises distribution WC WC:Vonmises_distribution Vonmises distribution :Vonmises:distribution Wald distribution WC WC:Wald_distribution Wald distribution :Wald:distribution Weibull distribution WC WC:Weibull_distribution Weibull distribution :Weibull:distribution Zipf distribution WC WC:Zipf_distribution Zipf distribution :Zipf:distribution Compartment that doesn't contain physical matter with properties like density = mass/volume; the volume is fixed WC WC:abstract_compartment abstract compartment :abstract:compartment Add metadata to facilitate comprehension COMODI:modelCuration WC WC:add_metadata_reason_provenance add metadata :add:metadata:reason:provenance beta distribution WC WC:beta_distribution beta distribution :beta:distribution binomial distribution WC WC:binomial_distribution binomial distribution :binomial:distribution Biological compartment WC WC:biological_compartment biological compartment :biological:compartment Cellular compartment sao1337158144 WC WC:cellular_compartment cellular compartment :cellular:compartment Chi square distribution WC WC:chi_square_distribution chi square distribution :chi:square:distribution Computational observation WC WC:computational_observation computational observation :computational:observation Correct COMODI:Correction WC WC:correct_intention_provenance correct :correct:intention:provenance Data analysis process SEPIO:0000003 SEPIO:0000037 WC WC:data_analysis_process data analysis process :data:analysis:process Data generation process WC WC:data_generation_process data generation process :data:generation:process Data set IAO:0000100 WC WC:data_set data set :data:set Data WC WC:data_target_provenance data :data:target:provenance deletion COMODI:Deletion WC WC:deletion_change_provenance deletion :deletion:change:provenance deterministic simulation algorithm SBO:0000295 kisao:KISAO_0000241 DSA WC WC:deterministic_simulation_algorithm deterministic simulation algorithm :deterministic:simulation:algorithm dFBA objective WC WC:dfba_objective dFBA objective :dfba:objective dFBA reaction WC WC:dfba_reaction dFBA reaction :dfba:reaction dFBA species WC WC:dfba_species dFBA species :dfba:species Disputing evidence SEPIO:0000404 WC WC:disputing_evidence disputing evidence :disputing:evidence Dynamic flux balance analysis SBO:0000624 kisao:KISAO_0000499 dFBA WC WC:dynamic_flux_balance_analysis dynamic flux balance analysis :dynamic:flux:balance:analysis Add more detail COMODI:Elaboration WC WC:elaborate_intention_provenance elaborate :elaborate:intention:provenance Encoding (e.g. a different or revised file format) COMODI:modelEncoding WC WC:encoding_target_provenance encoding :encoding:target:provenance Expand the scope COMODI:Expansion WC WC:expand_intention_provenance expand :expand:intention:provenance Experimental observation WC WC:experimental_observation experimental observation :experimental:observation Exponential distribution WC WC:exponential_distribution exponential distribution :exponential:distribution Extracellular compartment WC WC:extracellular_compartment extracellular compartment :extracellular:compartment F distribution WC WC:f_distribution f distribution :f:distribution Fluid compartment WC WC:fluid_compartment fluid compartment :fluid:compartment Gamma distribution WC WC:gamma_distribution gamma distribution :gamma:distribution Geometric compartment WC WC:geometric_compartment geometric compartment :geometric:compartment Geometric distribution WC WC:geometric_distribution geometric distribution :geometric:distribution Hill rate law SBO:0000192 WC WC:hill_rate_law Hill rate law :hill:rate:law Hypergeometric distribution WC WC:hypergeometric_distribution hypergeometric distribution :hypergeometric:distribution Implementation error such as a typo COMODI:Typo WC WC:implementation_error_reason_provenance implementation error :implementation:error:reason:provenance Inconclusive evidence SEPIO:0000405 WC WC:inconclusive_evidence inconclusive evidence :inconclusive:evidence Incorrect interpretation of existing knowledge COMODI:MismatchWithPublication WC WC:incorrect_interpretation_reason_provenance incorrect interpretation of existing knowledge :incorrect:interpretation:reason:provenance Intention COMODI:Intention WC WC:intention_provenance intention :intention:provenance k_cat SBO:0000025 WC WC:k_cat k_cat :k:cat Kinetic constant SBO:0000009 WC WC:kinetic_constant kinetic constant :kinetic:constant Log normal distribution WC WC:log_normal_distribution log normal distribution :log:normal:distribution Log series distribution WC WC:log_series_distribution log series distribution :log:series:distribution Logisitic distribution WC WC:logisitic_distribution logisitic distribution :logisitic:distribution Mass-action rate law SBO:0000012 WC WC:mass_action_rate_law Mass-action rate law :mass:action:rate:law Membrane compartment WC WC:membrane_compartment membrane compartment :membrane:compartment Metadata COMODI:modelAnnotation WC WC:metadata_target_provenance metadata :metadata:target:provenance Migrate object to another version of a specification COMODI:ChangedSpecification WC WC:migrate_version_reason_provenance migrate to another version :migrate:version:reason:provenance Dynamics WC WC:model_dynamics_target_provenance dynamics :model:dynamics:target:provenance model element WC WC:model_element model element :model:element Initial conditions WC WC:model_initial_conditions_target_provenance initial conditions :model:initial:conditions:target:provenance model COMODI:modelDefinition WC WC:model_target_provenance model :model:target:provenance modeling framework kisao:KISAO_0000000 WC WC:modeling_framework modeling framework :modeling:framework Modular rate law SBO:0000527 WC WC:modular_rate_law Modular rate law :modular:rate:law Multinomial distribution WC WC:multinomial_distribution multinomial distribution :multinomial:distribution Multivariate-normal distribution WC WC:multivariate_normal_distribution multivariate-normal distribution :multivariate:normal:distribution Negative-binomial distribution WC WC:negative_binomial_distribution negative-binomial distribution :negative:binomial:distribution New goal for a project. For example, a new phenotype that a model should predict or a new molecular mechanism that a model should account for WC WC:new_goal_reason_provenance new goal for a project :new:goal:reason:provenance New knowledge COMODI:KnowledgeGain WC WC:new_knowledge_reason_provenance new knowledge :new:knowledge:reason:provenance next reaction method SBO:0000295 kisao:KISAO_0000241 NRM WC WC:next_reaction_method next reaction method :next:reaction:method Noncentral-chi square distribution WC WC:noncentral-chi_square_distribution noncentral-chi square distribution :noncentral-chi:square:distribution Noncentral-f distribution WC WC:noncentral-f_distribution noncentral-f distribution :noncentral-f:distribution Normal distribution WC WC:normal_distribution normal distribution :normal:distribution Ordinary differential equations SBO:0000062 ODEs WC WC:ordinary_differential_equations ordinary differential equations :ordinary:differential:equations Physical compartment SBO:0000290 WC WC:physical_compartment physical compartment :physical:compartment Power distribution WC WC:power_distribution power distribution :power:distribution Pseudo-species WC WC:pseudo_species pseudo species :pseudo:species random distribution WC WC:random_distribution random distribution :random:distribution rate law SBO:0000001 WC WC:rate_law rate law :rate:law Reason COMODI:Reason WC WC:reason_provenance reason :reason:provenance Simplify COMODI:Simplification WC WC:simplify_intention_provenance simplify :simplify:intention:provenance Type of species MATR:Compound WC WC:species_type species_type :species:type Standard-Cauchy distribution WC WC:standard-Cauchy_distribution standard-Cauchy distribution :standard-Cauchy:distribution Standard-exponential distribution WC WC:standard-exponential_distribution standard-exponential distribution :standard-exponential:distribution Standard-gamma distribution WC WC:standard-gamma_distribution standard-gamma distribution :standard-gamma:distribution Standard-normal distribution WC WC:standard-normal_distribution standard-normal distribution :standard-normal:distribution Standard-t distribution WC WC:standard-t_distribution standard-t distribution :standard-t:distribution stochastic simulation algorithm SBO:0000295 kisao:KISAO_0000241 SSA WC WC:stochastic_simulation_algorithm stochastic simulation algorithm :stochastic:simulation:algorithm stop condition WC WC:stop_condition stop condition :stop:condition supplementary_material WC WC:supplementary_material supplementary material :supplementary:material Supporting evidence SEPIO:0000403 WC WC:supporting_evidence supporting evidence :supporting:evidence Target COMODI:Target WC WC:target_provenance target :target:provenance Theoretical observation WC WC:theoretical_observation theoretical observation :theoretical:observation Triangular distribution WC WC:triangular_distribution triangular distribution :triangular:distribution Uniform distribution WC WC:uniform_distribution uniform distribution :uniform:distribution v_max SBO:0000186 WC WC:v_max v_max :v:max 0.0.1 14:01:2019 13:00 WC 1.4 Jonathan Karr <karr@mssm.edu> distributed under the MIT License (https://github.com/KarrLab/wc_lang/blob/master/LICENSE)