Alexander Pico Andra Waagmeester Anwesha Bohler Egon Willighagen Martina Kutmon Ryan Miller Susan Coort WikiPathways WP Ontology A variable URL to the ChEBI data source. BridgeDb ChEBI link A variable URL to the Chemspider data source. BridgeDb ChemSpider link A variable URL to the Ensembl data source. BridgeDb Ensembl link A variable URL to the NCBI Gene data source. BridgeDb Entrez Gene link A variable URL to the HUGO Gene Nomenclature Committee (HGNC) data source. BridgeDb HGNC link A variable URL to the Human Metabolome Database (HMDB) data source. BridgeDb HMDB link A variable URL to the PubChem data source (Compound identifiers). BridgeDb PubChem link A variable URL to the Rhea data source. BridgeDb Rhea link A variable URL to the UniProt data source. BridgeDb UniProt link A variable URL to the Wikidata data source. BridgeDb Wikidata link It is the link between the biological entity and the gpml entity. Used in cases of interactions, complexes and groups. is about Latin name of the organsm in which this pathway takes place. organism name void:Pathway wp:Binding A binding interaction between two physical entities resulting in the formation of an explicit complex that is reversible without an external factor (e.g. protein complexes). Binding wp:Catalysis A process where a chemical reaction is enhanced by the action of a catalyst. Catalysis wp:Complex A physically bound combination of two or more biological entities. Complex wp:ComplexBinding A binding interaction that specifically leads to the formation of a complex. ComplexBinding wp:Conversion A process in which a biological entity gets converted into another entity. This could be a metabolic conversion where compound gets chemical modified. Conversion wp:DataNode Superclass; deprecated; do not use. DataNode wp:DirectedInteraction Defines a biochemical relationship from a source biological entity to a target biological entity. DirectedInteraction wp:GeneProduct An entity representing any product of a given gene, including DNA, RNA and Protein. This is the most generic representation of a gene-based biomolecule and is useful when more than one representation might be useful in the given context. GeneProduct wp:Inhibition A process in which one biological entity restrains, blocks, or suppresses another biological entity or interaction. Inhibition wp:Interaction Defines the biochemical relationship between biological entities. Interaction wp:Metabolite Any chemical compound taking part in a pathway. Unlike true metabolites, this node is also used for chemical compounds which are not the product or substrate of a metabolic conversion. Metabolite wp:Pathway A biological process representing a set of interactions and relationships among genes, proteins, metabolites, and other factors in the context of cellular compartments, tissues and organisms. Pathway wp:Protein A biomolecular polymer of amino acids, translated from mRNA. Protein wp:PublicationReference A reference to a published article, book or other citable material. Most commonly a primary literature reference that is indexed by PubMed. PublicationReference wp:Rna A biomolecular polymer of ribonucleic acids, transcibed from DNA. Rna wp:Stimulation An interaction in which the source entity enhances the rate or extent of another reaction or entity. Stimulation wp:TranscriptionTranslation An interaction in which the source entity regulates or influences in the transcription or translation of a target entity. Also referred to as a Template Reaction. Transcription Translation wp:Translocation A process in which a biological entity moves from one cellular location to another. Translocation biopax:Dna biopax:Gene biopax:Protein biopax:Rna rdfs:Class rdfs:Resource skos:ConceptScheme WikiPathways WP Ontology text/html;charset=UTF-8 IE=edge width=device-width, initial-scale=1 wp:celltypeOntologyTag A term from the Cell Type ontology available on the NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/CL). cell type ontology tag wp:diseaseOntologyTag A term from the Human Disease Ontology available on the NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/DOID). disease ontology tag wp:ontologyTag A term from an ontology or controlled vocabulary. ontology tag The scientific name (e.g., Homo sapiens) of the species being described by the pathway. organism wp:participants participants wp:pathwayOntologyTag A term from the Pathway Ontology ontology available at NCBO's BioPortal (http://bioportal.bioontology.org/ontologies/PW). pathway ontology tag wp:source The beginning terminus of an interaction. source wp:target The ending terminus of an interaction. target Alexander Pico Andra Waagmeester Anwesha Bohler Egon Willighagen Martina Kutmon Ryan Miller Susan Coort WikiPathways WP Ontology text/turtle RDF Turtle