ZFA description. Zebrafish Anatomy Ontology (ZFA) OBO-Edit 2.3.1 28:01:2025 12:26 zebrafish_anatomical_ontology 1.2 ybrad CARO part_of NCBITaxon:7955 CL part_of NCBITaxon:7955 TAO part_of NCBITaxon:7955 VSAO part_of NCBITaxon:7955 2025-01-28 definition term replaced by plural form cell_slim subset_property synonym_type_property consider has_alternative_id has_broad_synonym database_cross_reference has_exact_synonym has_narrow_synonym has_obo_format_version has_obo_namespace has_related_synonym has_synonym_type in_subset shorthand treat-xrefs-as-genus-differentia BFO:0000050 zebrafish_anatomical_ontology part_of part_of part of BFO:0000051 zebrafish_anatomical_ontology has_part has_part has_part X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X). BFO:0000062 zebrafish_anatomical_ontology preceded_by preceded_by preceded_by X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X). goc:cjm RO:0002202 zebrafish_anatomical_ontology develops_from develops_from develops from The visible division between epiblast and hypoblast in the gastrula. TAO:0000000 zebrafish_anatomy ZFA:0000000 Brachet's cleft ZFA:0000000 The visible division between epiblast and hypoblast in the gastrula. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kupffer's vesicle has been compared to the mouse embryonic node. TAO:0000001 ciliated organ of asymmetry zebrafish_anatomy ZFA:0000001 Kupffer's vesicle ZFA:0000001 Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kupffer's vesicle has been compared to the mouse embryonic node. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-050328-4 ZFIN:ZDB-PUB-961014-576 ciliated organ of asymmetry ZFIN:ZDB-PUB-050221-4 true ZFA:0000002 Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm. CL:0007016 TAO:0000003 adaxial cells zebrafish_anatomy ZFA:0000003 adaxial cell ZFA:0000003 Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm. PMID:8951054 adaxial cells Anterior portion of the axial hypoblast. TAO:0000004 pre-polster zebrafish_anatomy ZFA:0000004 anterior axial hypoblast ZFA:0000004 Anterior portion of the axial hypoblast. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 pre-polster ZFIN:ZDB-PUB-051019-5 Blood vessels that carry blood away from the heart. TAO:0000005 zebrafish_anatomy arterial system ZFA:0000005 artery ZFA:0000005 Blood vessels that carry blood away from the heart. GOC:cvs ORCiD:0000-0002-2244-7917 The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. TAO:0000006 yolk ball zebrafish_anatomy ZFA:0000006 ball ZFA:0000006 The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. ZFIN:ZDB-PUB-961014-576 yolk ball ZFIN:ZDB-PUB-961014-576 A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. TAO:0000007 zebrafish_anatomy ZFA:0000007 blood ZFA:0000007 A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. GOC:cvs ORCiD:0000-0002-2244-7917 Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system. ZFA:0001661 TAO:0000008 zebrafish_anatomy brain structure ZFA:0000008 brain ZFA:0000008 Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system. GOC:mh ORCiD:0000-0001-9114-8737 Cavitated compound organ that receives blood flow from the atrium and delivers blood to the body via the aorta. Valves are present to direct flow. There are only two chambers present in the fish heart. TAO:0000009 ventricle zebrafish_anatomy ZFA:0000009 cardiac ventricle ZFA:0000009 Cavitated compound organ that receives blood flow from the atrium and delivers blood to the body via the aorta. Valves are present to direct flow. There are only two chambers present in the fish heart. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-020122-4 Anatomical system that functions in circulation and has as its parts the heart and vasculature. The lymphatic system is considered part of the cardiovascular system. TAO:0000010 zebrafish_anatomy ZFA:0000010 cardiovascular system ZFA:0000010 Anatomical system that functions in circulation and has as its parts the heart and vasculature. The lymphatic system is considered part of the cardiovascular system. GOC:cvs ORCiD:0000-0002-2244-7917 Extension of the dorsal aorta in the post-vent region. TAO:0000011 CA zebrafish_anatomy ZFA:0000011 caudal artery ZFA:0000011 Extension of the dorsal aorta in the post-vent region. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 The brain and spinal cord. TAO:0000012 cns zebrafish_anatomy ZFA:0000012 central nervous system ZFA:0000012 The brain and spinal cord. ZFIN:ZDB-PUB-961014-576 Ganglion which is located in the head. TAO:0000013 cranial ganglia zebrafish_anatomy presumptive cranial ganglia ZFA:0000013 cranial ganglion ZFA:0000013 Ganglion which is located in the head. GOC:mh ORCiD:0000-0001-9114-8737 cranial ganglia Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery. TAO:0000014 DA dorsal aortic root zebrafish_anatomy ZFA:0000014 dorsal aorta ZFA:0000014 Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 ZFA:0001512 zebrafish_anatomy ZFA:0000015 anatomical set true ZFA:0000015 The outer layer of the embryo derived from the epiblast. The definitive ectoderm will give rise to such tissues as epidermis, the central nervous system, neural crest, and sensory placode. TAO:0000016 zebrafish_anatomy ZFA:0000016 ectoderm ZFA:0000016 The outer layer of the embryo derived from the epiblast. The definitive ectoderm will give rise to such tissues as epidermis, the central nervous system, neural crest, and sensory placode. http://zfin.org/zf_info/zfbook/stages/gast.html TAO:0000017 zebrafish_anatomy ZFA:0000017 endoderm ZFA:0000017 The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. TAO:0000018 zebrafish_anatomy ZFA:0000018 epiblast ZFA:0000018 The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. ZFIN:ZDB-PUB-961014-576 A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. It is located directly rostral to the posterior commissure and dorsal to the habenular commissure. TAO:0000019 corpus pineale pineal gland pineal organ zebrafish_anatomy ZFA:0000019 epiphysis ZFA:0000019 A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. It is located directly rostral to the posterior commissure and dorsal to the habenular commissure. GOC:cvs GOC:mh ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1268 ZFIN:ZDB-PUB-961014-576 Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. CARO:0000042 TAO:0000020 extraembryonic structures zebrafish_anatomy ZFA:0000020 extraembryonic structure ZFA:0000020 Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. GOC:mh ORCiD:0000-0001-9114-8737 extraembryonic structures true ZFA:0000021 Multi-tissue structure that is the ventral-most aspect of the developing neural tube. The floor plate is a specialized glial structure with secretory function that spans the rostral-caudal axis from the midbrain to the tail regions. The floor plate is one of first structures that differentiate in the developing nervous system. TAO:0000022 floorplate fp zebrafish_anatomy ZFA:0000022 The floor plate cells are a row of cells along the a-p axis ~3 cells wide that make up the ventral floor of the early spinal cord. Floor plate cells are prominent rectangular cells with a triangular cross section with one cell in the middle that straddles the ventral midline and usually one cell lateral to the middle cell on both sides. 14hpf. floor plate ZFA:0000022 Multi-tissue structure that is the ventral-most aspect of the developing neural tube. The floor plate is a specialized glial structure with secretory function that spans the rostral-caudal axis from the midbrain to the tail regions. The floor plate is one of first structures that differentiate in the developing nervous system. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-980205-16 A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle. TAO:0000023 DFCs dorsal forerunner cells forerunner cells zebrafish_anatomy ZFA:0000023 forerunner cell group ZFA:0000023 A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle. ZFIN:ZDB-PUB-970107-2 DFCs dorsal forerunner cells forerunner cells Layer of the retina that contains the ganglion cell bodies. TAO:0000024 ganglion cell layer zebrafish_anatomy ZFA:0000024 retinal ganglion cell layer ZFA:0000024 Layer of the retina that contains the ganglion cell bodies. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0000025 A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. TAO:0000026 hgg zebrafish_anatomy ZFA:0000026 hatching gland ZFA:0000026 A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 Skeletal system of paired fins. TAO:0000027 appendicular skeleton zebrafish_anatomy ZFA:0000027 paired fin skeleton ZFA:0000027 Skeletal system of paired fins. GOC:mh ORCiD:0000-0001-9114-8737 Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardial precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. TAO:0000028 cardiac field heart primordia zebrafish_anatomy ZFA:0000028 heart primordium ZFA:0000028 Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardial precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. ZFIN:ZDB-PUB-010219-2 heart primordia The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. From Neuroanatomy of the Zebrafish Brain. TAO:0000029 rhombencephalon zebrafish_anatomy ZFA:0000029 hindbrain ZFA:0000029 The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula utricle senses linear acceleration and gravity. The macula utricle covers most of the floor of the utricle. TAO:0000030 maculae utricle zebrafish_anatomy ZFA:0000030 macula utricle ZFA:0000030 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula utricle senses linear acceleration and gravity. The macula utricle covers most of the floor of the utricle. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-7 maculae utricle Portion of tissue that arises from the arise from the lateral edges of the shield and is located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived. TAO:0000031 zebrafish_anatomy ZFA:0000031 hypochord ZFA:0000031 Portion of tissue that arises from the arise from the lateral edges of the shield and is located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived. ZFIN:ZDB-PUB-000621-3 ZFIN:ZDB-PUB-060807-3 Multi-tissue structure which is the largest portion of diencephalon and is ventrally located. The hypothalamus arises near the end of the segmentation period and the embryonic hypothalamic region gives rise to the neurohypophysis and other diencephalic nuclei. TAO:0000032 zebrafish_anatomy ZFA:0000032 hypothalamus ZFA:0000032 Multi-tissue structure which is the largest portion of diencephalon and is ventrally located. The hypothalamus arises near the end of the segmentation period and the embryonic hypothalamic region gives rise to the neurohypophysis and other diencephalic nuclei. ZFIN:ZDB-PUB-961014-576 TAO:0000033 ICM intermediate cell mass of Oellacher posterior intermediate cell mass zebrafish_anatomy ZFA:0000033 intermediate cell mass of mesoderm ZFA:0000033 A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000034 ll zebrafish_anatomy ZFA:0000034 lateral line system ZFA:0000034 A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 Portion of tissue that is a transparent, biconvex structure located in the eye through which light is focused. TAO:0000035 lenses zebrafish_anatomy ZFA:0000035 lens ZFA:0000035 Portion of tissue that is a transparent, biconvex structure located in the eye through which light is focused. GOC:mh ORCiD:0000-0001-9114-8737 http://encyclopedia.thefreedictionary.com/Lens+(anatomy lenses System responsible for the production and movement of bile. TAO:0000036 zebrafish_anatomy ZFA:0000036 liver and biliary system ZFA:0000036 System responsible for the production and movement of bile. GOC:cvs ORCiD:0000-0002-2244-7917 Zebrafish anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. CARO:0000003 TAO:0000037 anatomical structures zebrafish_anatomy ZFA:0000037 anatomical structure ZFA:0000037 Zebrafish anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. GOC:mh ORCiD:0000-0001-9114-8737 anatomical structures Embryonic structure, the edge of the blastoderm. TAO:0000038 zebrafish_anatomy ZFA:0000038 margin ZFA:0000038 Embryonic structure, the edge of the blastoderm. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 TAO:0000039 zebrafish_anatomy ZFA:0000039 median axial vein ZFA:0000039 Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent. TAO:0000040 zebrafish_anatomy median fin ZFA:0000040 median fin fold ZFA:0000040 Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0000041 zebrafish_anatomy ZFA:0000041 mesoderm ZFA:0000041 The boundary between the mesencephalon and the rhombencephalon. TAO:0000042 isthmus mhb midbrain-hindbrain boundary zebrafish_anatomy ZFA:0000042 midbrain hindbrain boundary ZFA:0000042 The boundary between the mesencephalon and the rhombencephalon. GOC:cvs ORCiD:0000-0002-2244-7917 Muscle pioneer cell part of somite 1. TAO:0000043 muscle pioneers somite 1 zebrafish_anatomy ZFA:0000043 muscle pioneer somite 1 ZFA:0000043 Muscle pioneer cell part of somite 1. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 1 Portion of somite 14 that gives rise to body wall muscle masses. TAO:0000044 zebrafish_anatomy ZFA:0000044 myotome somite 14 ZFA:0000044 Portion of somite 14 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. TAO:0000045 zebrafish_anatomy ZFA:0000045 neural crest ZFA:0000045 A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. ZFIN:ZDB-PUB-961014-576 Portion of retina composed of all the neural tissues in the retina. TAO:0000046 neural retina neuroretina zebrafish_anatomy ZFA:0000046 retinal neural layer ZFA:0000046 Portion of retina composed of all the neural tissues in the retina. GOC:mh ORCiD:0000-0001-9114-8737 Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired. TAO:0000047 nasal sac zebrafish_anatomy nose ZFA:0000047 peripheral olfactory organ ZFA:0000047 Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired. GOC:cvs ORCiD:0000-0002-2244-7917 Neurogenic placode that gives rise to the olfactory neurons that which convey odor information to the CNS. TAO:0000048 olfactory placodes zebrafish_anatomy ZFA:0000048 olfactory placode ZFA:0000048 Neurogenic placode that gives rise to the olfactory neurons that which convey odor information to the CNS. GOC:mh ORCiD:0000-0001-9114-8737 olfactory placodes Lumen of optic stalk. TAO:0000049 optic recesses zebrafish_anatomy ZFA:0000049 optic recess ZFA:0000049 Lumen of optic stalk. ZFIN:ZDB-PUB-101008-1 optic recesses Portion of tissue that is comprised of neuroepithelium which has pinched off from the anterior neural keel and will form the optic cup. TAO:0000050 optic vesicles zebrafish_anatomy ZFA:0000050 optic vesicle ZFA:0000050 Portion of tissue that is comprised of neuroepithelium which has pinched off from the anterior neural keel and will form the optic cup. GOC:mh ORCiD:0000-0001-9114-8737 optic vesicles Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.) TAO:0000051 otocyst ov zebrafish_anatomy otic capsule ZFA:0000051 otic vesicle ZFA:0000051 Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.) GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 Actinotrichium which is part of the dorsal fin fold. TAO:0000052 dorsal actinotrichia zebrafish_anatomy ZFA:0000052 dorsal actinotrichium ZFA:0000052 Actinotrichium which is part of the dorsal fin fold. GOC:cvs ORCiD:0000-0002-2244-7917 dorsal actinotrichia Embryonic structure part of the mesoderm fated to become segmental plate. TAO:0000053 presumptive segmental plates zebrafish_anatomy ZFA:0000053 presumptive segmental plate ZFA:0000053 Embryonic structure part of the mesoderm fated to become segmental plate. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 presumptive segmental plates Serous membrane that surrounds the heart. TAO:0000054 pericardial sac zebrafish_anatomy ZFA:0000054 pericardium ZFA:0000054 Serous membrane that surrounds the heart. GOC:cvs ORCiD:0000-0002-2244-7917 true ZFA:0000055 Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. TAO:0000056 zebrafish_anatomy ZFA:0000056 pharynx ZFA:0000056 Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. ZFIN:ZDB-PUB-961014-576 true ZFA:0000057 The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. TAO:0000058 pillow zebrafish_anatomy ZFA:0000058 polster ZFA:0000058 The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 pillow ZFIN:ZDB-PUB-961014-576 TAO:0000059 POC post optic commissure post-optic commissure zebrafish_anatomy ZFA:0000059 postoptic commissure ZFA:0000059 Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. TAO:0000060 zebrafish_anatomy ZFA:0000060 prechordal plate ZFA:0000060 Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. ZFIN:ZDB-PUB-961014-576 true ZFA:0000061 Embryonic structure that gives rise to the forebrain. TAO:0000062 presumptive prosencephalon zebrafish_anatomy ZFA:0000062 presumptive forebrain ZFA:0000062 Embryonic structure that gives rise to the forebrain. GOC:mh ORCiD:0000-0001-9114-8737 Region of the gastrula which gives rise to the neural plate. ZFA:0000061 TAO:0000063 presumptive central nervous system prospective neuroectoderm prospective vegetal ectoderm zebrafish_anatomy neurectoderm ZFA:0000063 presumptive neural plate ZFA:0000063 Region of the gastrula which gives rise to the neural plate. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium. TAO:0000064 outer layer optic cup presumptive pigmented epithelia zebrafish_anatomy ZFA:0000064 presumptive retinal pigmented epithelium ZFA:0000064 Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium. GOC:mh ORCiD:0000-0001-9114-8737 presumptive pigmented epithelia true ZFA:0000065 An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage. TAO:0000066 zebrafish_anatomy anus ZFA:0000066 proctodeum ZFA:0000066 An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage. GOC:mh ORCiD:0000-0001-9114-8737 Intermediate mesoderm that is located beneath the anterior somites and gives rise to the pronephros and pronephric duct. TAO:0000067 pronephric primordium zebrafish_anatomy ZFA:0000067 pronephric mesoderm ZFA:0000067 Intermediate mesoderm that is located beneath the anterior somites and gives rise to the pronephros and pronephric duct. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000606-4 pronephric primordium ZFIN:ZDB-PUB-000606-4 Cluster of cells in the neural plate that have the potential to become neuroblast. TAO:0000068 proneural clusters zebrafish_anatomy ZFA:0000068 proneural cluster ZFA:0000068 Cluster of cells in the neural plate that have the potential to become neuroblast. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-990921-1 proneural clusters Hindbrain segment or neuromere posterior to rhombomere 5. TAO:0000069 r6 zebrafish_anatomy ZFA:0000069 rhombomere 6 ZFA:0000069 Hindbrain segment or neuromere posterior to rhombomere 5. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 TAO:0000070 zebrafish_anatomy ZFA:0000070 Consider post-composing term ZFA:0009053 sensory neuron with GO:0030424 axon sensory axons peripheral true ZFA:0000070 Embryonic structure that is a local accumulation of cells along the germ ring. The shield marks the dorsal side of the embryo. TAO:0000071 Spemann Mangold organizer Spemann's organizer dorsal organizer organizer zebrafish_anatomy ZFA:0000071 shield ZFA:0000071 Embryonic structure that is a local accumulation of cells along the germ ring. The shield marks the dorsal side of the embryo. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 Anteriormost undifferentiated mesodermal component of early trunk segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000072 zebrafish_anatomy ZFA:0000072 somite 1 ZFA:0000072 Anteriormost undifferentiated mesodermal component of early trunk segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 5 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000073 zebrafish_anatomy ZFA:0000073 somite 5 ZFA:0000073 Undifferentiated mesodermal component of early trunk segment 5 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 26 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000074 zebrafish_anatomy ZFA:0000074 somite 26 ZFA:0000074 Undifferentiated mesodermal component of early tail segment 26 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFA:0001664 TAO:0000075 medulla spinalis zebrafish_anatomy spinal cord structure ZFA:0000075 spinal cord ZFA:0000075 medulla spinalis ZFIN:ZDB-PUB-961014-1280 The swim bladder is a double-chambered organ located in the coelom and used to maintain buoyancy and may function as an acoustic resonator. The zebrafish does not appear to have a gas gland, but it is not yet clear if there are gas producing cells distributed more widely. TAO:0000076 gas bladder zebrafish_anatomy ZFA:0000076 swim bladder ZFA:0000076 The swim bladder is a double-chambered organ located in the coelom and used to maintain buoyancy and may function as an acoustic resonator. The zebrafish does not appear to have a gas gland, but it is not yet clear if there are gas producing cells distributed more widely. ZFIN:ZDB-PUB-060306-11 TAO:0000077 tailbud zebrafish_anatomy tail bud mesenchyme ZFA:0000077 tail bud ZFA:0000077 Actinotrichium which is part of the ventral fin fold. TAO:0000078 ventral actinotrichia zebrafish_anatomy ZFA:0000078 ventral actinotrichium ZFA:0000078 Actinotrichium which is part of the ventral fin fold. GOC:mh ORCiD:0000-0001-9114-8737 ventral actinotrichia The anterior and dorsal forebrain neuromere. In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. From Neuroanatomy of the Zebrafish Brain. TAO:0000079 zebrafish_anatomy ZFA:0000079 telencephalon ZFA:0000079 The anterior and dorsal forebrain neuromere. In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Cranial neural crest which gives rise to the trigeminal ganglion. TAO:0000080 zebrafish_anatomy ZFA:0000080 trigeminal neural crest ZFA:0000080 Cranial neural crest which gives rise to the trigeminal ganglion. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0000081 zebrafish_anatomy ZFA:0000081 trunk mesenchyme ZFA:0000081 Vessels that carry blood to the heart. TAO:0000082 zebrafish_anatomy venous system ZFA:0000082 vein ZFA:0000082 Vessels that carry blood to the heart. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0000083 zebrafish_anatomy ZFA:0000083 ventral mesoderm ZFA:0000083 Giant syncytial uncleaved cell containing nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. ZFA:0009197 CL:0000428 TAO:0000084 yolk cell zebrafish_anatomy ZFA:0000084 yolk ZFA:0000084 Giant syncytial uncleaved cell containing nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 Apical ectodermal ridge that is part of the pectoral fin bud. ZFA:0000736 TAO:0000085 TAO:0000736 AER pectoral fin apical ectodermal ridge pectoral fin apical ectodermal ridge pectoral fin buds apical ectodermal ridge pectoral fins apical fold pectoral fin zebrafish_anatomy ZFA:0000085 apical ectodermal ridge pectoral fin bud ZFA:0000085 Apical ectodermal ridge that is part of the pectoral fin bud. GOC:mh ORCiD:0000-0001-9114-8737 apical ectodermal ridge pectoral fin buds Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm. TAO:0000086 enveloping layer zebrafish_anatomy ZFA:0000086 EVL ZFA:0000086 Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm. ZFIN:ZDB-PUB-961014-576 enveloping layer ZFIN:ZDB-PUB-961014-576 true ZFA:0000087 Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. TAO:0000088 YSL periblast zebrafish_anatomy yolk sac ZFA:0000088 yolk syncytial layer ZFA:0000088 Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. ZFIN:ZDB-PUB-961014-576 YSL ZFIN:ZDB-PUB-961014-576 periblast ZFIN:ZDB-PUB-961014-576 Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine. TAO:0000089 fin fold actinotrichia median fin fold actinotrichium zebrafish_anatomy ZFA:0000089 fin fold actinotrichium ZFA:0000089 Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine. http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm fin fold actinotrichia Apical ectodermal ridge that is part of the dorsal fin. TAO:0000090 zebrafish_anatomy ZFA:0000090 apical ectodermal ridge dorsal fin ZFA:0000090 Apical ectodermal ridge that is part of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Notochord rudiment. ZFA:0001219 TAO:0000091 TAO:0001219 chorda mesoderm chordamesoderm presumptive notochord zebrafish_anatomy ZFA:0000091 axial chorda mesoderm ZFA:0000091 Notochord rudiment. ZFIN:ZDB-PUB-961014-576 Organism subdivision running along the rostral-caudal axis of the early embryo. TAO:0000092 midline zebrafish_anatomy ZFA:0000092 axis ZFA:0000092 Organism subdivision running along the rostral-caudal axis of the early embryo. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula. TAO:0000093 blastomeres zebrafish_anatomy ZFA:0000093 blastomere ZFA:0000093 Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula. ZFIN:ZDB-PUB-961014-576 blastomeres Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. TAO:0000094 blood islands posterior ICM zebrafish_anatomy caudal hematopoietic tissue posterior blood island ZFA:0000094 blood island ZFA:0000094 Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. ZFIN:ZDB-PUB-961014-576 blood islands Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. TAO:0000095 branchial arch skeleton gill arches 1-5 skeleton zebrafish_anatomy ZFA:0000095 pharyngeal arch 3-7 skeleton ZFA:0000095 Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. ZFIN:ZDB-PUB-961014-576 Blood vasculature comprised of the cardinal veins. TAO:0000096 zebrafish_anatomy ZFA:0000096 cardinal system ZFA:0000096 Blood vasculature comprised of the cardinal veins. GOC:cvs ORCiD:0000-0002-2244-7917 Artery originating at the junction of the first two aortic arches and supplying the anterior brain. TAO:0000097 zebrafish_anatomy ZFA:0000097 carotid artery ZFA:0000097 Artery originating at the junction of the first two aortic arches and supplying the anterior brain. ZFIN:ZDB-PUB-961014-576 Anatomical cluster which consists of rapidly dividing cells. TAO:0000098 zebrafish_anatomy cell cycle cell division proliferation ZFA:0000098 proliferative region ZFA:0000098 Anatomical cluster which consists of rapidly dividing cells. GOC:mh ORCiD:0000-0001-9114-8737 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the brain. TAO:0000099 zebrafish_anatomy ZFA:0000099 brain vasculature ZFA:0000099 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the brain. GOC:cvs ORCiD:0000-0002-2244-7917 Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. TAO:0000100 zebrafish_anatomy ZFA:0000100 cerebellum ZFA:0000100 Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished here. ISBN:3764351209 ZFIN:ZDB-PUB-961014-1280 The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). TAO:0000101 zebrafish_anatomy ZFA:0000101 diencephalon ZFA:0000101 The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). ZFIN:ZDB-PUB-961014-576 Region of the median fin fold that develops into the dorsal fin. TAO:0000102 zebrafish_anatomy ZFA:0000102 dorsal fin fold ZFA:0000102 Region of the median fin fold that develops into the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFS:0000002 ZFS:0000003 ZFS:0000004 ZFS:0000005 ZFS:0000006 ZFS:0000007 ZFS:0000008 ZFS:0000009 ZFS:0000010 ZFS:0000011 ZFS:0000012 ZFS:0000013 ZFS:0000014 ZFS:0000015 ZFS:0000016 ZFS:0000017 ZFS:0000018 ZFS:0000019 ZFS:0000020 ZFS:0000021 ZFS:0000022 ZFS:0000023 ZFS:0000024 ZFS:0000025 ZFS:0000026 ZFS:0000027 ZFS:0000028 ZFS:0000029 ZFS:0000030 ZFS:0000031 ZFS:0000032 zebrafish_anatomy ZFA:0000103 embryo true ZFA:0000103 zebrafish_anatomy ZFA:0000104 lateral cells true ZFA:0000104 A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. TAO:0000105 zebrafish_anatomy ZFA:0000105 epidermis ZFA:0000105 A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. ZFIN:ZDB-PUB-040726-12 The posterior elongated region of the yolk cell that forms during the segmentation period. TAO:0000106 yolk extension zebrafish_anatomy ZFA:0000106 extension ZFA:0000106 The posterior elongated region of the yolk cell that forms during the segmentation period. ZFIN:ZDB-PUB-961014-576 yolk extension ZFIN:ZDB-PUB-961014-576 Cavitated compound organ that consists of the neural retina, lens, cornea and iris and is the sensory apparatus of the visual system. TAO:0000107 eyes zebrafish_anatomy ZFA:0000107 eye ZFA:0000107 Cavitated compound organ that consists of the neural retina, lens, cornea and iris and is the sensory apparatus of the visual system. GOC:mh ORCiD:0000-0001-9114-8737 eyes Surface structure involved in locomotion. TAO:0000108 fins zebrafish_anatomy ZFA:0000108 fin ZFA:0000108 Surface structure involved in locomotion. TAO:WD fins The most anterior region the brain including both the telencephalon and diencephalon. TAO:0000109 prosencephalon zebrafish_anatomy ZFA:0000109 forebrain ZFA:0000109 The most anterior region the brain including both the telencephalon and diencephalon. ZFIN:ZDB-PUB-961014-576 Fluid-filled brain cavity. Most posterior brain ventricle. TAO:0000110 4th ventricle hindbrain ventricle rhombencephalic ventricle rhombencephalic vesicle ventricle IV ventriculus rhombencephali zebrafish_anatomy ZFA:0000110 fourth ventricle ZFA:0000110 Fluid-filled brain cavity. Most posterior brain ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 ventriculus rhombencephali ZFIN:ZDB-PUB-961014-1280 Embryonic structure that forms as a thickened annulus at the blastoderm rim. The germ ring is thickened because it is the involuting margin of the blastoderm. TAO:0000111 zebrafish_anatomy ZFA:0000111 germ ring ZFA:0000111 Embryonic structure that forms as a thickened annulus at the blastoderm rim. The germ ring is thickened because it is the involuting margin of the blastoderm. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The alimentary or digestive tract, and associated organs. TAO:0000112 alimentary canal enteric tract gut tube zebrafish_anatomy ZFA:0000112 gut ZFA:0000112 The alimentary or digestive tract, and associated organs. GOC:mh ORCiD:0000-0001-9114-8737 Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. TAO:0000113 zebrafish_anatomy ZFA:0000113 head mesenchyme ZFA:0000113 Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. http://www.Biology-Text.com Blood pumping organ composed of four components: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus. TAO:0000114 zebrafish_anatomy ZFA:0000114 heart ZFA:0000114 Blood pumping organ composed of four components: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus. GOC:cvs ORCiD:0000-0002-2244-7917 The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5 hpf and 22 hpf, and eventually telescope out into the primitive heart tube at 24hpf. TAO:0000115 heart cone rudimentary heart zebrafish_anatomy ZFA:0000115 heart rudiment ZFA:0000115 The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5 hpf and 22 hpf, and eventually telescope out into the primitive heart tube at 24hpf. ZFIN:ZDB-PUB-010219-2 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena. TAO:0000116 maculae lagena zebrafish_anatomy ZFA:0000116 macula lagena ZFA:0000116 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-7 ZFIN:ZDB-PUB-020403-4 maculae lagena The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. TAO:0000117 mesendoderm zebrafish_anatomy ZFA:0000117 hypoblast ZFA:0000117 The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. ZFIN:ZDB-PUB-961014-576 mesendoderm ZFIN:ZDB-PUB-961014-576 A compound organ which is an endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non-neuroectodermal origin. TAO:0000118 pituitary zebrafish_anatomy ZFA:0000118 hypophysis ZFA:0000118 A compound organ which is an endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non-neuroectodermal origin. GOC:cvs ORCiD:0000-0002-2244-7917 Retinal layer that contains the interneurons, the horizontal, bipolar and amacrine cells. TAO:0000119 inner nuclear layer intermediate cell layer zebrafish_anatomy ZFA:0000119 retinal inner nuclear layer ZFA:0000119 Retinal layer that contains the interneurons, the horizontal, bipolar and amacrine cells. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-970602-3 inner nuclear layer Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line. TAO:0000120 lateral line ganglia llg zebrafish_anatomy ZFA:0000120 lateral line ganglion ZFA:0000120 Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line. GOC:ymb ORCiD:0000-0002-9900-7880 lateral line ganglia TAO:0000121 LPM lateral plate zebrafish_anatomy ZFA:0000121 lateral plate mesoderm ZFA:0000121 Ectodermal primordium of the lens of the eye. TAO:0000122 lens placodes zebrafish_anatomy ZFA:0000122 lens placode ZFA:0000122 Ectodermal primordium of the lens of the eye. ZFIN:ZDB-PUB-961014-576 lens placodes Solid compound organ with three lobes that has many functions including bile production, blood detoxification, the production of critical plasma proteins and clotting factors, complement proteins and the storage of many substances, such as lipids, amino acids, iron, and glycogen. Female fish produce vitellogenins in the liver. TAO:0000123 zebrafish_anatomy ZFA:0000123 liver ZFA:0000123 Solid compound organ with three lobes that has many functions including bile production, blood detoxification, the production of critical plasma proteins and clotting factors, complement proteins and the storage of many substances, such as lipids, amino acids, iron, and glycogen. Female fish produce vitellogenins in the liver. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-030115-26 ZFIN:ZDB-PUB-090407-7 ZFIN:ZDB-PUB-100730-19 Embryonic primordium that develops into the liver. TAO:0000124 liver bud zebrafish_anatomy ZFA:0000124 liver primordium ZFA:0000124 Embryonic primordium that develops into the liver. GOC:cvs ORCiD:0000-0002-2244-7917 Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000125 neuromast mandibular neuromasts mandibular zebrafish_anatomy ZFA:0000125 mandibular lateral line neuromast ZFA:0000125 Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts mandibular Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999). TAO:0000126 autocentrum zebrafish_anatomy ZFA:0000126 centrum ZFA:0000126 Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999). GOC:mh ORCiD:0000-0001-9114-8737 zebrafish_anatomy ZFA:0000127 mesenchyme condensations true ZFA:0000127 The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. TAO:0000128 mesencephalon zebrafish_anatomy ZFA:0000128 midbrain ZFA:0000128 The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. ZFIN:ZDB-PUB-961014-576 mesencephalon ZFIN:ZDB-PUB-961014-576 true ZFA:0000129 TAO:0000130 nasal canal nasal cavity nasal pit olfactory cavity zebrafish_anatomy ZFA:0000130 olfactory pit ZFA:0000130 An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. TAO:0000131 zebrafish_anatomy presumptive central nervous system ZFA:0000131 neural keel ZFA:0000131 An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. ZFIN:ZDB-PUB-961014-576 Portion of tissue that is the earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. TAO:0000132 zebrafish_anatomy presumptive central nervous system ZFA:0000132 neural plate ZFA:0000132 Portion of tissue that is the earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. ZFIN:ZDB-PUB-961014-576 An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. TAO:0000133 zebrafish_anatomy presumptive central nervous system ZFA:0000133 neural rod ZFA:0000133 An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. ZFIN:ZDB-PUB-961014-576 true ZFA:0000134 Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms. TAO:0000135 notocord zebrafish_anatomy ZFA:0000135 notochord ZFA:0000135 Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms. ZFIN:ZDB-PUB-961014-576 Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000136 neuromast otic neuromasts otic zebrafish_anatomy ZFA:0000136 otic lateral line neuromast ZFA:0000136 Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts otic Portion of tissue that provides a pathway for axon migration from the retina. The cells of the optic stalk later differentiate into glial cells of the optic nerve. TAO:0000137 optic stalks zebrafish_anatomy ZFA:0000137 optic stalk ZFA:0000137 Portion of tissue that provides a pathway for axon migration from the retina. The cells of the optic stalk later differentiate into glial cells of the optic nerve. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-030210-6 ZFIN:ZDB-PUB-101201-28 optic stalks Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the mid-segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.) TAO:0000138 zebrafish_anatomy ZFA:0000138 otic placode ZFA:0000138 Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the mid-segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.) GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 true ZFA:0000139 The pancreas is an organ composed of endocrine and exocrine glandular tissue that produce hormones and digestive enzymes. Unlike in other studied vertebrates the pancreas in zebrafish develops from two buds, one anterior and one posterior. In adult fish the main pancreas is located on the right side attached to the lateral aspect of the intestine by the pancreatic duct. Typically, one large islet and 3-6 smaller islets occupy the main pancreas. The tail of the pancreas is embedded with single beta cells or clusters of small islets and extends caudally along the right side of the intestine. TAO:0000140 zebrafish_anatomy ZFA:0000140 pancreas ZFA:0000140 The pancreas is an organ composed of endocrine and exocrine glandular tissue that produce hormones and digestive enzymes. Unlike in other studied vertebrates the pancreas in zebrafish develops from two buds, one anterior and one posterior. In adult fish the main pancreas is located on the right side attached to the lateral aspect of the intestine by the pancreatic duct. Typically, one large islet and 3-6 smaller islets occupy the main pancreas. The tail of the pancreas is embedded with single beta cells or clusters of small islets and extends caudally along the right side of the intestine. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-030902-16 ZFIN:ZDB-PUB-090616-17 Fin bud that develops into the pectoral fin. TAO:0000141 pectoral fin buds zebrafish_anatomy ZFA:0000141 pectoral fin bud ZFA:0000141 Fin bud that develops into the pectoral fin. GOC:mh ORCiD:0000-0001-9114-8737 pectoral fin buds Nervous structures including ganglia outside of the central nervous system. TAO:0000142 pns zebrafish_anatomy ZFA:0000142 peripheral nervous system ZFA:0000142 Nervous structures including ganglia outside of the central nervous system. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 The layer within the retina where the photoreceptor cell receptor segments reside. This layer is closest to the sclera. TAO:0000143 retinal photoreceptor layers zebrafish_anatomy ZFA:0000143 retinal photoreceptor layer ZFA:0000143 The layer within the retina where the photoreceptor cell receptor segments reside. This layer is closest to the sclera. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-677 retinal photoreceptor layers A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. TAO:0000144 PRE RPE pigmented epithelium pigmented retina pigmented retinal epithelium zebrafish_anatomy ZFA:0000144 retinal pigmented epithelium ZFA:0000144 A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 true ZFA:0000145 Embryonic structure that gives rise to the brain. TAO:0000146 brain rudiment zebrafish_anatomy ZFA:0000146 presumptive brain ZFA:0000146 Embryonic structure that gives rise to the brain. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0000147 Embryonic structure that gives rise to the midbrain. TAO:0000148 presumptive mesencephalon zebrafish_anatomy ZFA:0000148 presumptive midbrain ZFA:0000148 Embryonic structure that gives rise to the midbrain. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure that arises from the heart rudiment and will become the heart tube. TAO:0000149 zebrafish_anatomy ZFA:0000149 primitive heart tube ZFA:0000149 Multi-tissue structure that arises from the heart rudiment and will become the heart tube. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010219-2 Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Wingert et al. have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons. TAO:0000150 pronephric ducts zebrafish_anatomy ZFA:0000150 pronephric duct ZFA:0000150 Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Wingert et al. have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-071029-9 ZFIN:ZDB-PUB-961014-576 pronephric ducts The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion. TAO:0000151 embryonic kidney pronephric nephron zebrafish_anatomy ZFA:0000151 pronephros ZFA:0000151 The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion. GOC:cvs GOC:mh ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 embryonic kidney ZFIN:ZDB-PUB-961014-576 Multi-tissue structure that contains the retinal neural layer and the retinal pigmented epithelium, and develops from the optic cup. TAO:0000152 retinas zebrafish_anatomy ZFA:0000152 retina ZFA:0000152 Multi-tissue structure that contains the retinal neural layer and the retinal pigmented epithelium, and develops from the optic cup. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 retinas Posteriormost hindbrain segment or neuromere. TAO:0000153 r8 zebrafish_anatomy ZFA:0000153 rhombomere 8 ZFA:0000153 Posteriormost hindbrain segment or neuromere. ZFIN:ZDB-PUB-961014-576 Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract. TAO:0000154 inflow tract zebrafish_anatomy ZFA:0000154 sinus venosus ZFA:0000154 Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. TAO:0000155 zebrafish_anatomy somitic mesoderm ZFA:0000155 somite ZFA:0000155 Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk or tail segment 20 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000156 zebrafish_anatomy ZFA:0000156 somite 20 ZFA:0000156 Undifferentiated mesodermal component of early trunk or tail segment 20 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Posteriormost undifferentiated mesodermal component of early tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000157 zebrafish_anatomy ZFA:0000157 somite 30 ZFA:0000157 Posteriormost undifferentiated mesodermal component of early tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Develops from the fused preural centrum 1+ ural centrum 1. TAO:0000158 compound centrum last vertebra ultimate vertebra zebrafish_anatomy ZFA:0000158 urostyle ZFA:0000158 This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Develops from the fused preural centrum 1+ ural centrum 1. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-011008-1 TAO:0000159 cerebral aqueduct medial tectal ventricle mesencephalic ventricle mesencephalic vesicle midbrain ventricle ventriculus mesencephali zebrafish_anatomy ZFA:0000159 tectal ventricle ZFA:0000159 ventriculus mesencephali ZFIN:ZDB-PUB-961014-1280 Multi-tissue structure that is the ventral part of the midbrain and develops from the basal plate. The tegmentum is bordered rostrally by the synencephalon, dorsal thalamus and posterior tuberculum, ventrally by the hypothalamus, and dorsolaterally by the torus semicircularis; caudally the tegmentum is continuous with the medulla oblongata. ZFA:0001354 TAO:0000160 mesencephalic tegmentum midbrain tegmentum zebrafish_anatomy ZFA:0000160 tegmentum ZFA:0000160 Multi-tissue structure that is the ventral part of the midbrain and develops from the basal plate. The tegmentum is bordered rostrally by the synencephalon, dorsal thalamus and posterior tuberculum, ventrally by the hypothalamus, and dorsolaterally by the torus semicircularis; caudally the tegmentum is continuous with the medulla oblongata. GOC:mh ORCiD:0000-0001-9114-8737 Fluid-filled brain cavity. TAO:0000161 3rd ventricle diencephalic ventricle diencephalic vesicle ventriculus diencephali zebrafish_anatomy ZFA:0000161 third ventricle ZFA:0000161 Fluid-filled brain cavity. ZFIN:ZDB-PUB-961014-576 ventriculus diencephali ZFIN:ZDB-PUB-961014-1280 The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. TAO:0000162 trigeminal placodes zebrafish_anatomy ZFA:0000162 trigeminal placode ZFA:0000162 The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 trigeminal placodes System that removes and collects metabolic waste from the blood while maintaining ion homeostasis. TAO:0000163 zebrafish_anatomy urinary system ZFA:0000163 renal system ZFA:0000163 System that removes and collects metabolic waste from the blood while maintaining ion homeostasis. ZFIN:ZDB-PUB-071029-9 TAO:0000164 zebrafish_anatomy ZFA:0000164 ventral mesenchyme ZFA:0000164 Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone. TAO:0000165 inferior lobe of hypothalamus inferior lobes lateral lobe of hypothalamus lobus inferior hypothalami zebrafish_anatomy ZFA:0000165 inferior lobe ZFA:0000165 Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 inferior lobe of hypothalamus ZFIN:ZDB-PUB-961014-1280 inferior lobes lobus inferior hypothalami ZFIN:ZDB-PUB-961014-1280 Patch of thickened, pseudostratified epithelium that is associated with the lateral semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The lateral crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) ZFA:0000378 TAO:0000166 lateral crista ampullaris lateral cristae lateral semicircular canal sensory patch lateral semicircular canal sensory patches lc zebrafish_anatomy medial crista ZFA:0000166 lateral crista ZFA:0000166 Patch of thickened, pseudostratified epithelium that is associated with the lateral semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The lateral crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 lateral cristae lateral semicircular canal sensory patches medial crista ZFIN:ZDB-PUB-051116-3 Median fin skeleton that is located posterior to the anus. TAO:0000167 zebrafish_anatomy ZFA:0000167 anal fin skeleton ZFA:0000167 Median fin skeleton that is located posterior to the anus. TAO:curator Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) TAO:0000168 am anterior sensory patch zebrafish_anatomy ZFA:0000168 anterior macula ZFA:0000168 Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 http://zfin.org/zf_info/anatomy/dict/sens/sens.html ZFA:0001410 zebrafish_anatomy ZFA:0000169 antorbital true ZFA:0000169 Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials. TAO:0000170 basibranchials zebrafish_anatomy ZFA:0000170 basibranchial ZFA:0000170 Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials. GOC:ymb ORCiD:0000-0002-9900-7880 basibranchials zebrafish_anatomy ZFA:0000171 A basisphenoid is absent in Danio rerio; its absence is a shared derived feature of all ostariophysan fishes (Fink and Fink, '81). from ZDB-PUB-961014-192 basisphenoid true ZFA:0000171 Muscle that is part of pharyngeal arches 3-7 which are also known as the branchial arches. TAO:0000172 branchial muscles zebrafish_anatomy ZFA:0000172 branchial muscle ZFA:0000172 Muscle that is part of pharyngeal arches 3-7 which are also known as the branchial arches. GOC:CVS ORCiD:0000-0002-2244-7917 branchial muscles Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. TAO:0000173 cardiac outflow tract outflow tract truncus zebrafish_anatomy ZFA:0000173 bulbus arteriosus ZFA:0000173 Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. ZFIN:ZDB-PUB-001026-2 Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex. TAO:0000174 caudal cerebellar tract caudal cerebellar tracts cerebellovestibular tracts zebrafish_anatomy ZFA:0000174 cerebellovestibular tract ZFA:0000174 Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-090422-9 caudal cerebellar tracts cerebellovestibular tracts Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines. TAO:0000175 caudal lateral line nerve zebrafish_anatomy ZFA:0000175 posterior lateral line nerve ZFA:0000175 Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines. ZFIN:ZDB-PUB-000523-3 ZFIN:ZDB-PUB-961014-763 Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain. TAO:0002204 area ventralis telencephali, nucleus lateralis zebrafish_anatomy ZFA:0000176 lateral nucleus of ventral telencephalon ZFA:0000176 Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000177 caudal obliques zebrafish_anatomy ZFA:0000177 caudal oblique ZFA:0000177 caudal obliques Portion of the fish's body that is posterior to the vent and anterior to the caudal fin. TAO:0000178 zebrafish_anatomy ZFA:0000178 caudal peduncle ZFA:0000178 Portion of the fish's body that is posterior to the vent and anterior to the caudal fin. GOC:mh ORCiD:0000-0001-9114-8737 Cranial nerve root which is part of the abducens nerve (CN-VI) and is located at the level of the intermediate reticular formation. Fuses with the rostral root of the abducens nerve and courses rostrally once outside the brain stem. From Neuroanatomy of the Zebrafish Brain. TAO:0000179 radix caudalis nervi abducentis zebrafish_anatomy ZFA:0000179 caudal root of abducens nerve ZFA:0000179 Cranial nerve root which is part of the abducens nerve (CN-VI) and is located at the level of the intermediate reticular formation. Fuses with the rostral root of the abducens nerve and courses rostrally once outside the brain stem. From Neuroanatomy of the Zebrafish Brain. ISBN:3764351209 Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterior cardinal vein in the posterior trunk. TAO:0000180 CV zebrafish_anatomy ZFA:0000180 caudal vein ZFA:0000180 Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterior cardinal vein in the posterior trunk. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 Telencephalic nucleus which is the most caudally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000181 Dp area dorsalis telencephali, zona posterior caudal zone of D posterior zone of dorsal telencephalic area zebrafish_anatomy ZFA:0000181 caudal zone of dorsal telencephalon ZFA:0000181 Telencephalic nucleus which is the most caudally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Dp ZFIN:ZDB-PUB-150226-6 Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, ventral to the dorsal caudal thalamic nucleus. TAO:0000182 central posterior thalamic nucleus nucleus centralis posterior thalami zebrafish_anatomy ZFA:0000182 central caudal thalamic nucleus ZFA:0000182 Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, ventral to the dorsal caudal thalamic nucleus. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure that is the central part of the pretectum. TAO:0000183 zebrafish_anatomy ZFA:0000183 central pretectum ZFA:0000183 Multi-tissue structure that is the central part of the pretectum. GOC:mh ORCiD:0000-0001-9114-8737 Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis. TAO:0000184 cleithra zebrafish_anatomy ZFA:0000184 cleithrum ZFA:0000184 Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 cleithra Anterior commissure which abuts the preoptic region dorsally. From Neuroanatomy of the Zebrafish Brain. TAO:0000185 commissura anterior, pars ventralis zebrafish_anatomy ZFA:0000185 commissura rostral, pars ventralis ZFA:0000185 Anterior commissure which abuts the preoptic region dorsally. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. TAO:0000186 duct of Cuvier zebrafish_anatomy ZFA:0000186 common cardinal vein ZFA:0000186 Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-576 true ZFA:0000187 Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain. TAO:0000188 cerebellar corpus corpus cerebelli granular layer corpus cerebellum zebrafish_anatomy ZFA:0000188 corpus cerebelli ZFA:0000188 Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 corpus cerebelli granular layer ZFIN:ZDB-PUB-961014-1280 corpus cerebellum Anatomical cluster of skeletal elements that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system. TAO:0000189 zebrafish_anatomy cranial vault ZFA:0000189 otic region ZFA:0000189 Anatomical cluster of skeletal elements that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system. GOC:ymb ORCiD:0000-0002-9900-7880 Structures containing a collection of nerve cell bodies. TAO:0000190 ganglia zebrafish_anatomy ZFA:0000190 ganglion ZFA:0000190 Structures containing a collection of nerve cell bodies. GOC:mh ORCiD:0000-0001-9114-8737 ganglia Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans. TAO:0000191 dentary bone zebrafish_anatomy ZFA:0000191 dentary ZFA:0000191 Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans. GOC:ymb ORCiD:0000-0002-9900-7880 The bundle of the sensory root of the trigeminal nerve that descends in the medulla oblongata providing somatosensory input to the nucleus of the descending trigeminal root and to the medial funicular nucleus. TAO:0000192 radix descendens nervi trigemini zebrafish_anatomy ZFA:0000192 descending trigeminal root ZFA:0000192 The bundle of the sensory root of the trigeminal nerve that descends in the medulla oblongata providing somatosensory input to the nucleus of the descending trigeminal root and to the medial funicular nucleus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1280 Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain. TAO:0000193 DIL diffuse nuclei zebrafish_anatomy ZFA:0000193 diffuse nucleus inferior lobe ZFA:0000193 Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 diffuse nuclei Diencephalic nucleus that is part of the central pretectum and is ventral to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000194 nucleus opticus accessorius dorsalis zebrafish_anatomy ZFA:0000194 dorsal accessory optic nucleus ZFA:0000194 Diencephalic nucleus that is part of the central pretectum and is ventral to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Dorsal fin muscle that moves individual rays the dorsal fin into a lowered position. The dorsal depressors extend from either the right or left base of a dorsal fin ray to the posterior edge of a proximal pterygophore in the median septum. Antagonistic to dorsal erector muscle. There is one dorsal depressor for each dorsal fin lepidotrichium. TAO:0000195 depressor dorsalis dorsal depressors zebrafish_anatomy ZFA:0000195 dorsal depressor ZFA:0000195 Dorsal fin muscle that moves individual rays the dorsal fin into a lowered position. The dorsal depressors extend from either the right or left base of a dorsal fin ray to the posterior edge of a proximal pterygophore in the median septum. Antagonistic to dorsal erector muscle. There is one dorsal depressor for each dorsal fin lepidotrichium. GOC:cvs ORCiD:0000-0002-2244-7917 dorsal depressors The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm). TAO:0000196 dorsal hypohyals zebrafish_anatomy ZFA:0000196 dorsal hypohyal bone ZFA:0000196 The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm). GOC:mh ORCiD:0000-0001-9114-8737 dorsal hypohyals Habenular nucleus where the efferent projections innervate the interpeduncular nucleus. The dorsal habenula is structurally homologous to the mammalian medial habenula. TAO:0000197 dorsal habenular nuclei dorsal nuclei zebrafish_anatomy ZFA:0000197 dorsal habenular nucleus ZFA:0000197 Habenular nucleus where the efferent projections innervate the interpeduncular nucleus. The dorsal habenula is structurally homologous to the mammalian medial habenula. ZFIN:ZDB-PUB-100202-7 dorsal habenular nuclei dorsal nuclei true ZFA:0000198 Diencephalic nucleus which is part of the dorsal hypothalamic zone and is located periventricularly. From Neuroanatomy of the Zebrafish Brain. TAO:0000199 zebrafish_anatomy ZFA:0000199 dorsal periventricular hypothalamus ZFA:0000199 Diencephalic nucleus which is part of the dorsal hypothalamic zone and is located periventricularly. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves. TAO:0000200 DRG dorsal root ganglia zebrafish_anatomy ZFA:0000200 dorsal root ganglion ZFA:0000200 Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves. GOC:mh ORCiD:0000-0001-9114-8737 dorsal root ganglia TAO:0000201 zebrafish_anatomy ZFA:0000201 dorsal transverse ZFA:0000201 Artery that carries blood leaving the gill. This is on the side of the aortic arch proximal to the lateral dorsal aorta. TAO:0000202 EBA zebrafish_anatomy ZFA:0000202 efferent branchial artery ZFA:0000202 Artery that carries blood leaving the gill. This is on the side of the aortic arch proximal to the lateral dorsal aorta. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 zebrafish_anatomy ZFA:0000203 Epicentrals are not present in D. rerio.ZDB-PUB-031103-13 epicentrals true ZFA:0000203 Esophagus part of the gut that develops from endodermal precursors at the rostral end of the digestive tract. The esophagus develops independently from the intestine. TAO:0000204 oesophagus zebrafish_anatomy ZFA:0000204 esophagus ZFA:0000204 Esophagus part of the gut that develops from endodermal precursors at the rostral end of the digestive tract. The esophagus develops independently from the intestine. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-030312-8 Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the ventral tip of the caudal fin. TAO:0000205 lateralis superficialis ventralis zebrafish_anatomy LSV external ventral flexor ZFA:0000205 external lateral ventral muscle ZFA:0000205 Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the ventral tip of the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 TAO:0000206 facial motor nucleus motor nucleus VII nVII nucleus motorius nervi facialis zebrafish_anatomy ZFA:0000206 facial nerve motor nucleus ZFA:0000206 Musculature part of fin. TAO:0000207 zebrafish_anatomy ZFA:0000207 fin musculature ZFA:0000207 Musculature part of fin. GOC:mh ORCiD:0000-0001-9114-8737 The compound organ that stores bile. TAO:0000208 zebrafish_anatomy ZFA:0000208 gall bladder ZFA:0000208 The compound organ that stores bile. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. TAO:0000209 lateral preglomerular nuclei zebrafish_anatomy ZFA:0000209 lateral preglomerular nucleus ZFA:0000209 Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 lateral preglomerular nuclei Portion of tissue that is the caudal gigantocellular portion of the magnocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000210 nucleus praeopticus magnocellularis, pars gigantocellularis zebrafish_anatomy ZFA:0000210 gigantocellular part of magnocellular preoptic nucleus ZFA:0000210 Portion of tissue that is the caudal gigantocellular portion of the magnocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion. TAO:0000211 gill lamellae zebrafish_anatomy ZFA:0000211 gill lamella ZFA:0000211 Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion. GOC:cvs ORCiD:0000-0002-2244-7917 http://www.briancoad.com/Dictionary/G.htm gill lamellae Brain structure which is paired and part of the vestibulolateralis lobe of the cerebellum and extends fibers into the cerebellar crest. From Neuroanatomy of the Zebrafish Brain. ZFA:0000187 TAO:0000212 eminentia granularis lateral granular eminence zebrafish_anatomy EG ZFA:0000212 granular eminence ZFA:0000212 Brain structure which is paired and part of the vestibulolateralis lobe of the cerebellum and extends fibers into the cerebellar crest. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus. TAO:0000213 habenulae habenular nucleus zebrafish_anatomy ZFA:0000213 habenula ZFA:0000213 The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus. GOC:mh ORCiD:0000-0001-9114-8737 habenulae ZFA:0000673 TAO:0000214 hypobranchial vessels zebrafish_anatomy ZFA:0000214 May be the same as hypobranchial artery and may need to be merged. hypobranchial vessel true ZFA:0000214 hypobranchial vessels Hindbrain nucleus where climbing fibers originate. The neurons in the inferior olive are capable of prolonged oscillatory activity. The inferior olive is called a precerebellar nucleus since virtually all of the efferent axons terminate in the cerebellum. TAO:0000215 zebrafish_anatomy ZFA:0000215 inferior olive ZFA:0000215 Hindbrain nucleus where climbing fibers originate. The neurons in the inferior olive are capable of prolonged oscillatory activity. The inferior olive is called a precerebellar nucleus since virtually all of the efferent axons terminate in the cerebellum. GOC:mh ISBN:0471888893 ORCiD:0000-0001-9114-8737 TAO:0000216 zebrafish_anatomy ZFA:0000216 This may need to be treated as a waypoint in the development of the various muscles or as a group of muscles. infracarinalis ZFA:0000216 The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.) TAO:0000217 ear zebrafish_anatomy otic capsule otocyst ZFA:0000217 inner ear ZFA:0000217 The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/ear/ear.html'>ear</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 true ZFA:0000218 TAO:0000219 intermediate reticular formations zebrafish_anatomy ZFA:0000219 intermediate reticular formation ZFA:0000219 intermediate reticular formations One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The lateral semicircular canal is associated with the lateral crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) ZFA:0000361 TAO:0000220 horizontal semicircular canal lateral semicircular canals lateral semicircular duct zebrafish_anatomy ZFA:0000220 lateral semicircular canal ZFA:0000220 One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The lateral semicircular canal is associated with the lateral crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 lateral semicircular canals TAO:0000221 internal levators zebrafish_anatomy ZFA:0000221 internal levator ZFA:0000221 internal levators Sensory trigeminal nucleus located in the most rostral position. It lies immediately caudal to the secondary gustatory nucleus. TAO:0000222 isthmic primary nuclei isthmic primary sensory trigeminal nucleus zebrafish_anatomy ZFA:0000222 isthmic primary nucleus ZFA:0000222 Sensory trigeminal nucleus located in the most rostral position. It lies immediately caudal to the secondary gustatory nucleus. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-1280 isthmic primary nuclei isthmic primary sensory trigeminal nucleus ZFIN:ZDB-PUB-961014-1280 Dermal bone that covers the region between the anterior margin of the eye and the upper jaw. Infraorbital 1 (the lachrymal) is the first and largest bone in the infraorbital series. Bears the anterior most part of the infraorbital canal. TAO:0000223 lachrymal bone lacrimal lacrymal bone zebrafish_anatomy ZFA:0000223 infraorbital 1 ZFA:0000223 Dermal bone that covers the region between the anterior margin of the eye and the upper jaw. Infraorbital 1 (the lachrymal) is the first and largest bone in the infraorbital series. Bears the anterior most part of the infraorbital canal. GOC:ymb ORCiD:0000-0002-9900-7880 ZFS:0000035 ZFS:0000036 ZFS:0000037 ZFS:0000038 ZFS:0000039 ZFS:0000040 ZFS:0000041 zebrafish_anatomy ZFA:0000224 obsolete larva true ZFA:0000224 Is an otic epithelium that will mature into the lateral crista. TAO:0000225 lateral crista primordia zebrafish_anatomy ZFA:0000225 lateral crista primordium ZFA:0000225 Is an otic epithelium that will mature into the lateral crista. GOC:ymb ORCiD:0000-0002-9900-7880 lateral crista primordia Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales. TAO:0000226 lateral ethmoids zebrafish_anatomy ZFA:0000226 lateral ethmoid ZFA:0000226 Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales. GOC:mh ORCiD:0000-0001-9114-8737 lateral ethmoids Diencephalic nucleus which is the lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain. TAO:0000227 lateral hypothalamic nuclei lateral tuberal nucleus zebrafish_anatomy arcuate nucleus ZFA:0000227 lateral hypothalamic nucleus ZFA:0000227 Diencephalic nucleus which is the lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 lateral hypothalamic nuclei Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts. TAO:0000228 lateral line primordia llp zebrafish_anatomy ZFA:0000228 lateral line primordium ZFA:0000228 Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts. GOC:ymb ORCiD:0000-0002-9900-7880 lateral line primordia Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. TAO:0000229 tractus olfactorius lateralis zebrafish_anatomy ZFA:0000229 lateral olfactory tract ZFA:0000229 Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Muscle that attaches to the parhypurpophyses. The muscle inserts on the upper three to five caudal fin rays. TAO:0000230 hypochordal longitudinalis zebrafish_anatomy ZFA:0000230 longitudinal hypochordal ZFA:0000230 Muscle that attaches to the parhypurpophyses. The muscle inserts on the upper three to five caudal fin rays. GOC:cvs ISBN:0080585272 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals that forms the lateral protrusion of the third ventricle. See also Di Dario (2004). ZFA:0005493 TAO:0000231 TAO:0001799 lateral recess of diencephalic ventricle lateral recesses recessus lateralis zebrafish_anatomy ZFA:0000231 lateral recess ZFA:0000231 Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals that forms the lateral protrusion of the third ventricle. See also Di Dario (2004). GOC:cvs GOC:mh ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 lateral recess of diencephalic ventricle ZFIN:ZDB-PUB-091221-27 lateral recesses recessus lateralis ZFIN:ZDB-PUB-961014-1280 Otic vesicle protrusion that is initially laterally located and then bifurcates and fuses anteriorly with the anterior protrusion, and posteriorly with the posterior protrusion. TAO:0000232 zebrafish_anatomy lateral semicircular canal primordia lateral semicircular canal primordium ZFA:0000232 otic vesicle lateral protrusion ZFA:0000232 Otic vesicle protrusion that is initially laterally located and then bifurcates and fuses anteriorly with the anterior protrusion, and posteriorly with the posterior protrusion. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-090330-11 lateral semicircular canal primordia Portion of tissue, located on the lower jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration. TAO:0000233 lower internal lip lower semilunar valve mandibular valve zebrafish_anatomy breathing valve buccal valve ZFA:0000233 lower oral valve ZFA:0000233 Portion of tissue, located on the lower jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-060921-12 lower internal lip ZFIN:ZDB-PUB-060921-12 lower semilunar valve ZFIN:ZDB-PUB-060921-12 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus. TAO:0000234 maculae neglecta zebrafish_anatomy ZFA:0000234 macula neglecta ZFA:0000234 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-7 ZFIN:ZDB-PUB-020403-4 maculae neglecta Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000235 magnocellular superficial pretectal nuclei zebrafish_anatomy ZFA:0000235 magnocellular superficial pretectal nucleus ZFA:0000235 Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 magnocellular superficial pretectal nuclei Muscle that are part of the mandibular arch (pharyngeal arch 1). TAO:0000236 mandibular muscles zebrafish_anatomy ZFA:0000236 mandibular muscle ZFA:0000236 Muscle that are part of the mandibular arch (pharyngeal arch 1). GOC:cvs ORCiD:0000-0002-2244-7917 mandibular muscles TAO:0000237 medial forebrain bundles diencephalon zebrafish_anatomy ZFA:0000237 medial forebrain bundle diencephalon ZFA:0000237 medial forebrain bundles diencephalon Telencephalic white matter which extends between the olfactory bulb and the ipsilateral ventral telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. TAO:0000238 tractus olfactorius medialis zebrafish_anatomy ZFA:0000238 medial olfactory tract ZFA:0000238 Telencephalic white matter which extends between the olfactory bulb and the ipsilateral ventral telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired. TAO:0000239 mesocoracoid bones zebrafish_anatomy ZFA:0000239 mesocoracoid bone ZFA:0000239 Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired. TAO:WD mesocoracoid bones The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit. TAO:0000240 metapterygoids zebrafish_anatomy ZFA:0000240 metapterygoid ZFA:0000240 The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit. GOC:ymb ORCiD:0000-0002-9900-7880 metapterygoids TAO:0000241 zebrafish_anatomy ZFA:0000241 midline column ZFA:0000241 Gonochoristic organism that can produce male gametes. CARO:0000027 TAO:0000242 zebrafish_anatomy ZFA:0000242 male organism ZFA:0000242 Gonochoristic organism that can produce male gametes. GOC:mh ORCiD:0000-0001-9114-8737 Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000243 lateral line neuromast lateral line organ neuromasts zebrafish_anatomy ZFA:0000243 neuromast ZFA:0000243 Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) ZFIN:ZDB-PUB-961014-576 neuromasts TAO:0000244 Edinger-Westphal nucleus zebrafish_anatomy ZFA:0000244 nucleus Edinger-Westphal ZFA:0000244 Sensory trigeminal nucleus that lies at the mediodorsal edge of the descending trigeminal root (DV). This nucleus is not clearly delineated. TAO:0000245 sensory nucleus of the descending trigeminal root zebrafish_anatomy ZFA:0000245 nucleus of the descending root ZFA:0000245 Sensory trigeminal nucleus that lies at the mediodorsal edge of the descending trigeminal root (DV). This nucleus is not clearly delineated. ZFIN:ZDB-PUB-961014-1280 sensory nucleus of the descending trigeminal root ZFIN:ZDB-PUB-961014-1280 Telencephalic nucleus which is located immediately ventral to the caudal zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000246 zebrafish_anatomy ZFA:0000246 nucleus taeniae ZFA:0000246 Telencephalic nucleus which is located immediately ventral to the caudal zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000247 CN-VIII auditory nerve octaval nerve statoacoustic nerve zebrafish_anatomy cochleovestibular nerve ZFA:0000247 cranial nerve VIII ZFA:0000247 cochleovestibular nerve ZFIN:ZDB-PUB-190924-19 Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000248 magnocellular preoptic nuclei zebrafish_anatomy ZFA:0000248 magnocellular preoptic nucleus ZFA:0000248 Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 magnocellular preoptic nuclei TAO:0000249 CN-I olfactory nerve zebrafish_anatomy ZFA:0000249 cranial nerve I ZFA:0000249 Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series. It is derived from the neural crest and is located in 2nd pharyngeal arch. TAO:0000250 opercles zebrafish_anatomy ZFA:0000250 opercle ZFA:0000250 Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series. It is derived from the neural crest and is located in 2nd pharyngeal arch. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-120529-44 opercles ZFA:0000863 zebrafish_anatomy ZFA:0000251 ZFIN not using series organization if at all possible. opercular-branchiostegal series true ZFA:0000251 Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm. TAO:0000252 optic tracts tractus opticus zebrafish_anatomy ZFA:0000252 optic tract ZFA:0000252 Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm. GOC:mh ORCiD:0000-0001-9114-8737 optic tracts tractus opticus ZFIN:ZDB-PUB-961014-1280 Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anteriolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone. TAO:0000253 orbitosphenoids zebrafish_anatomy ZFA:0000253 orbitosphenoid ZFA:0000253 Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anteriolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone. GOC:mh ORCiD:0000-0001-9114-8737 orbitosphenoids Embryonic structure that develops into the pancreatic bud. TAO:0000254 pancreatic anlage zebrafish_anatomy ZFA:0000254 During normal development, the exocrine anlage arises from bilateral sets of progenitors within the blastoderm margin that migrate to the midline use and differentiate prior to joining the rostral intestine. ZDB-PUB-050623-3. pancreas primordium ZFA:0000254 Embryonic structure that develops into the pancreatic bud. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 pancreatic anlage ZFIN:ZDB-PUB-050623-3 Mesoderm which is lateral to the neural tube on both sides. ZFA:0000942 TAO:0000255 zebrafish_anatomy paraxial mesenchyme ZFA:0000255 paraxial mesoderm ZFA:0000255 Mesoderm which is lateral to the neural tube on both sides. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0000256 pars subcommissuralis of V zebrafish_anatomy ZFA:0000256 pars subcommissuralis of ventral telencephalon ZFA:0000256 Cartilage which is part of the pectoral fin. TAO:0000257 pectoral fin cartilages zebrafish_anatomy ZFA:0000257 pectoral fin cartilage ZFA:0000257 Cartilage which is part of the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 pectoral fin cartilages Musculature that is part of the pelvic fin. TAO:0000258 zebrafish_anatomy ZFA:0000258 pelvic fin musculature ZFA:0000258 Musculature that is part of the pelvic fin. GOC:mh ORCiD:0000-0001-9114-8737 One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast. One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000259 mandibular lateral lines mandibular line zebrafish_anatomy ZFA:0000259 mandibular lateral line ZFA:0000259 One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast. One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 mandibular lateral lines mandibular line ZFIN:ZDB-PUB-000523-3 Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain. TAO:0000260 periventricular nuclei ventral zone of periventricular hypothalamus zebrafish_anatomy ZFA:0000260 periventricular nucleus ZFA:0000260 Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 periventricular nuclei TAO:0000261 zebrafish_anatomy ZFA:0000261 pharyngohyoid ZFA:0000261 One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The posterior semicircular canal is associated with the posterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) ZFA:0000483 TAO:0000262 caudal vertical semicircular canal posterior semicircular canals posterior semicircular duct zebrafish_anatomy ZFA:0000262 posterior semicircular canal ZFA:0000262 One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The posterior semicircular canal is associated with the posterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 posterior semicircular canals Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. TAO:0000263 precaudal vertebrae zebrafish_anatomy abdominal vertebra trunk vertebra ZFA:0000263 precaudal vertebra ZFA:0000263 Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-031103-13 precaudal vertebrae Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle. TAO:0000264 preopercles zebrafish_anatomy ZFA:0000264 preopercle ZFA:0000264 Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle. GOC:mh ORCiD:0000-0001-9114-8737 preopercles Portion of presumptive mesoderm fated to become dorsal mesoderm. Determined by fate mapping. TAO:0000265 zebrafish_anatomy ZFA:0000265 presumptive dorsal mesoderm ZFA:0000265 Portion of presumptive mesoderm fated to become dorsal mesoderm. Determined by fate mapping. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0000266 pretecto mammillary tract pretecto-mamillary tract pretectomamillary tract zebrafish_anatomy TPp ZFA:0000266 pretecto-mammillary tract ZFA:0000266 Portion of tissue which is the most peripheral layer and present only in the rostroventral olfactory bulb. From Neuroanatomy of the Zebrafish Brain. TAO:0000267 olfactory nerve layer stratum nervosum bulbi olfactorii zebrafish_anatomy ZFA:0000267 primary olfactory fiber layer ZFA:0000267 Portion of tissue which is the most peripheral layer and present only in the rostroventral olfactory bulb. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 olfactory nerve layer ZFIN:ZDB-PUB-050523-2 Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials. TAO:0000268 anal fin proximal radials zebrafish_anatomy ZFA:0000268 anal fin proximal radial ZFA:0000268 Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials. GOC:cvs ORCiD:0000-0002-2244-7917 anal fin proximal radials Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays. TAO:0000269 flexor caudalis ventralis inferioris inferior ventral flexor zebrafish_anatomy CVI ZFA:0000269 inferior caudal ventral flexor ZFA:0000269 Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae. TAO:0000270 maxillae zebrafish_anatomy ZFA:0000270 maxilla ZFA:0000270 The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae. GOC:ymb ORCiD:0000-0002-9900-7880 maxillae The internal skeletal supports of the median and paired fins. TAO:0000271 radials zebrafish_anatomy ZFA:0000271 radial ZFA:0000271 The internal skeletal supports of the median and paired fins. TAO:curator radials System responsible for the exchange of gases across the gill membranes. TAO:0000272 zebrafish_anatomy ZFA:0000272 respiratory system ZFA:0000272 System responsible for the exchange of gases across the gill membranes. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0000273 Octaval sensory nucleus located rostral to the magnocellular octaval nucleus and arches dorsally around the descending trigeminal root. Receives some vestibular information and is part of the vestibulo-ocular reflex circuitry and projects to abducens and oculomotor nuclei and descends to the spinal cord. From Neuroanatomy of the Zebrafish Brain. TAO:0000274 anterior octaval nucleus nucleus octavus anterior zebrafish_anatomy ZFA:0000274 rostral octaval nucleus ZFA:0000274 Octaval sensory nucleus located rostral to the magnocellular octaval nucleus and arches dorsally around the descending trigeminal root. Receives some vestibular information and is part of the vestibulo-ocular reflex circuitry and projects to abducens and oculomotor nuclei and descends to the spinal cord. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000275 zebrafish_anatomy ZFA:0000275 rostral tegmental nucleus ZFA:0000275 TAO:0000276 zebrafish_anatomy ZFA:0000276 rostrolateral thalamic nucleus of Butler & Saidel ZFA:0000276 Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins. TAO:0000277 scales zebrafish_anatomy ZFA:0000277 scale ZFA:0000277 Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins. TAO:WD scales TAO:0000278 zebrafish_anatomy ZFA:0000278 secondary gustatory nucleus medulla oblongata ZFA:0000278 Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. TAO:0000279 PSM presomitic mesoderm zebrafish_anatomy ZFA:0000279 segmental plate ZFA:0000279 Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 Medial division of the valvula cerebelli. TAO:0000280 medial division valvula cerebelli, pars medialis zebrafish_anatomy ZFA:0000280 medial valvula cerebelli ZFA:0000280 Medial division of the valvula cerebelli. GOC:mh ORCiD:0000-0001-9114-8737 Specialized neuronal receptor cells of the posterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.) TAO:0000281 sensory hair cells posterior macula zebrafish_anatomy ZFA:0000281 hair cell posterior macula ZFA:0000281 Specialized neuronal receptor cells of the posterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.) ZFIN:ZDB-PUB-961014-576 sensory hair cells posterior macula Nervous system responsible for transmitting sensory stimuli. TAO:0000282 sensory systems zebrafish_anatomy ZFA:0000282 sensory system ZFA:0000282 Nervous system responsible for transmitting sensory stimuli. GOC:mh ORCiD:0000-0001-9114-8737 sensory systems true ZFA:0000283 Dermal bone lying below the opercle. The subopercle is a paired bone. TAO:0000284 subopercles zebrafish_anatomy ZFA:0000284 subopercle ZFA:0000284 Dermal bone lying below the opercle. The subopercle is a paired bone. GOC:mh ORCiD:0000-0001-9114-8737 subopercles Pectoral fin muscle that develops from the primitive pectoral fin adductor. The adductor superficialis originates at the cleithrum and inserts on all fins rays except the first. Insertion of the adductor superficialis on fin rays is distal to the fin ray bases. TAO:0000285 adductor superficialis superficial adductors zebrafish_anatomy ZFA:0000285 superficial adductor ZFA:0000285 Pectoral fin muscle that develops from the primitive pectoral fin adductor. The adductor superficialis originates at the cleithrum and inserts on all fins rays except the first. Insertion of the adductor superficialis on fin rays is distal to the fin ray bases. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 adductor superficialis ZFIN:ZDB-PUB-050920-7 superficial adductors Slow twitch muscle derived from the lateral wedge-shaped strip of slow muscle cells originally positioned at the lateral end of the horizontal myoseptum. In the adult it is a thin band of muscle positioned mediolaterally above the epaxial-hypaxial junction, posteriorly the superficial lateralis elaborates into the superficial lateralis dorsalis and superficial lateralis ventralis. TAO:0000286 lateralis superficialis zebrafish_anatomy lateral superficial muscle ZFA:0000286 superficial lateralis ZFA:0000286 Slow twitch muscle derived from the lateral wedge-shaped strip of slow muscle cells originally positioned at the lateral end of the horizontal myoseptum. In the adult it is a thin band of muscle positioned mediolaterally above the epaxial-hypaxial junction, posteriorly the superficial lateralis elaborates into the superficial lateralis dorsalis and superficial lateralis ventralis. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-080519-4 ZFIN:ZDB-PUB-171118-8 ZFIN:ZDB-PUB-961219-12 Paired, deep caudal fin muscles that originate from the 30th vertebra and extend toward the dorsal base of the caudal fin where they insert broadly on fin rays. TAO:0000287 flexor caudalis dorsalis superioris superior dorsal flexor zebrafish_anatomy CDS ZFA:0000287 superior caudal dorsal flexor ZFA:0000287 Paired, deep caudal fin muscles that originate from the 30th vertebra and extend toward the dorsal base of the caudal fin where they insert broadly on fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 TAO:0000288 zebrafish_anatomy ZFA:0000288 supracarinalis ZFA:0000288 zebrafish_anatomy ZFA:0000289 Supramaxillary bones are absent from D. rerio, as in other ostariophysans (Fink and Fink, '81) supramaxillae true ZFA:0000289 Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium. TAO:0000290 zebrafish_anatomy ZFA:0000290 sphenoid region ZFA:0000290 Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium. GOC:mh ORCiD:0000-0001-9114-8737 Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line. TAO:0000291 intermediate octavolateral nucleus medial octavolateralis nuclei zebrafish_anatomy MON ZFA:0000291 medial octavolateralis nucleus ZFA:0000291 Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line. GOC:ymb ORCiD:0000-0002-9900-7880 medial octavolateralis nuclei Organism subdivision which is the collection of anatomical structures on the body surface. TAO:0000292 surface structures zebrafish_anatomy ZFA:0000292 surface structure ZFA:0000292 Organism subdivision which is the collection of anatomical structures on the body surface. GOC:mh ORCiD:0000-0001-9114-8737 surface structures Multi-tissue structure that is located between the dorsal diencephalon and the mesencephalon and contains the caudal commissure. From Neuroanatomy of the Zebrafish Brain. TAO:0000293 zebrafish_anatomy ZFA:0000293 synencephalon ZFA:0000293 Multi-tissue structure that is located between the dorsal diencephalon and the mesencephalon and contains the caudal commissure. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is part of the caudal tuberculum. In goldfish the lateral torus is exclusively involved with gustatory and general visceral systems. TAO:0000294 lateral torus zebrafish_anatomy ZFA:0000294 torus lateralis ZFA:0000294 Diencephalic nucleus which is part of the caudal tuberculum. In goldfish the lateral torus is exclusively involved with gustatory and general visceral systems. GOC:cvs GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 PMID:9552123 A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. TAO:0000295 5th ganglion fifth ganglion gV trigeminal ganglia zebrafish_anatomy ZFA:0000295 trigeminal ganglion ZFA:0000295 A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 trigeminal ganglia TAO:0000296 zebrafish_anatomy ZFA:0000296 uncrossed tecto-bulbar tract ZFA:0000296 The multi-tissue, vagal lobe is a large, paired brain stem structure flanking the unpaired facial lobe laterally. The vagal lobe contains motor and gustatory neurons. While some degree of histological segregation is apparent within the vagal lobe, a clear lamination, as seen in goldfish or carp is absent. LX zebrafish_anatomy ZFA:0000297 vagal lobe ZFA:0000297 The multi-tissue, vagal lobe is a large, paired brain stem structure flanking the unpaired facial lobe laterally. The vagal lobe contains motor and gustatory neurons. While some degree of histological segregation is apparent within the vagal lobe, a clear lamination, as seen in goldfish or carp is absent. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-1280 LX ZFIN:ZDB-PUB-961014-1280 Is a surface structure and is the external opening of the cloaca. TAO:0000298 cloacal opening cloacal vent zebrafish_anatomy ZFA:0000298 vent ZFA:0000298 Is a surface structure and is the external opening of the cloaca. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 cloacal opening ZFIN:ZDB-PUB-110602-26 Peripheral nucleus of the ventral telencephalon that is a band of tightly packed cells starting at the level of the anterior commissure and extends into the telencephalo-diencephalic boundary region. From Neuroanatomy of the Zebrafish Brain. TAO:0000299 ENv endopeduncular nucleus, ventral part entopeduncular nucleus, ventral part nucleus entopeduncularis, pars ventralis ventral entopeduncular nucleus V zebrafish_anatomy ZFA:0000299 The GAD67-positive (dorsal) entopeduncular nucleus (EN= former ENd) appears to be anatomically separate from the GAD67-negative bed nucleus of the stria medullaris (BNSM), which was formerly called the ventral part of the entopeduncular nucleus (ENv). ZDB-PUB-090814-14. ventral entopeduncular nucleus of ventral telencephalon ZFA:0000299 Peripheral nucleus of the ventral telencephalon that is a band of tightly packed cells starting at the level of the anterior commissure and extends into the telencephalo-diencephalic boundary region. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm). TAO:0000300 lower hypohyal ventrohyal zebrafish_anatomy ZFA:0000300 ventral hypohyal bone ZFA:0000300 The ventral hypohyal ossifies first along the anteroventral tip of the ceratohyal cartilage at the insertion of the tendon from the sternohyoideus (5.7 mm). GOC:mh ORCiD:0000-0001-9114-8737 Extraocular muscle that runs parallel to the long axis of the fish and inserts on the anterior side of the eye at the sclera-corneal (SC) junction. The medial rectus lies in the same anatomical plane as the lateral rectus. The medial rectus is innervated by the oculomotor nerve. TAO:0000301 medial recti zebrafish_anatomy ZFA:0000301 Mature form at Hatching:Long-pec. medial rectus ZFA:0000301 Extraocular muscle that runs parallel to the long axis of the fish and inserts on the anterior side of the eye at the sclera-corneal (SC) junction. The medial rectus lies in the same anatomical plane as the lateral rectus. The medial rectus is innervated by the oculomotor nerve. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111205-9 medial recti Habenular nucleus positioned ventromedially to the dorsal habenular nuclei. The ventral habenular nuclei are paired and symmetrical, each have a conical shape defined by a wide rostral end, occupying the entire anterior region of the habenula, and a narrow caudal end. The axons of the ventral habenular nucleus passed laterally through the interpeduncular nucleus and projected to the ventral part of the median raphe. The ventral habenular nucleus is homolog mammalian lateral habenular nucleus. TAO:0000302 zebrafish_anatomy ZFA:0000302 ventral habenular nucleus ZFA:0000302 Habenular nucleus positioned ventromedially to the dorsal habenular nuclei. The ventral habenular nuclei are paired and symmetrical, each have a conical shape defined by a wide rostral end, occupying the entire anterior region of the habenula, and a narrow caudal end. The axons of the ventral habenular nucleus passed laterally through the interpeduncular nucleus and projected to the ventral part of the median raphe. The ventral habenular nucleus is homolog mammalian lateral habenular nucleus. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-100202-7 ZFIN:ZDB-PUB-120709-5 Gonochoristic organism that can produce female gametes. CARO:0000028 TAO:0000303 zebrafish_anatomy ZFA:0000303 female organism ZFA:0000303 Gonochoristic organism that can produce female gametes. GOC:mh ORCiD:0000-0001-9114-8737 Brain structure which is the ventral part of the telencephalon and is consists of periventricular nuclei surrounding the unpaired median ventricle and those which have migrated away from the ependyma. From Neuroanatomy of the Zebrafish Brain. TAO:0000304 area ventralis telencephali subpallium zebrafish_anatomy ZFA:0000304 ventral telencephalon ZFA:0000304 Brain structure which is the ventral part of the telencephalon and is consists of periventricular nuclei surrounding the unpaired median ventricle and those which have migrated away from the ependyma. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Groove that separates the paired inferior (or lateral) lobes of the hypothalamus from the tuberal hypothalamus. TAO:0000305 zebrafish_anatomy hypothalamic sulcus ZFA:0000305 ventral sulcus ZFA:0000305 Groove that separates the paired inferior (or lateral) lobes of the hypothalamus from the tuberal hypothalamus. GOC:mh ORCiD:0000-0001-9114-8737 http://en.wikipedia.org/wiki/Hypothalamic_sulcus TAO:0000306 zebrafish_anatomy ZFA:0000306 ventrolateral thalamic nucleus ZFA:0000306 Brain structure which is part of the cerebellum consists of the paired granular eminentia and the medial caudal lobe. From Neuroanatomy of the Zebrafish Brain. TAO:0000307 zebrafish_anatomy ZFA:0000307 vestibulolateralis lobe ZFA:0000307 Brain structure which is part of the cerebellum consists of the paired granular eminentia and the medial caudal lobe. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 A thin medial unpaired dermal bone that is kite or paddle-shape. Underlying the ethmoid, and slightly overlapping the parasphenoid posteriorly, the prevomer bears an anterolateral projection that terminates in a concave depression in which the preethmoids sit. TAO:0000308 vomer zebrafish_anatomy ZFA:0000308 prevomer ZFA:0000308 A thin medial unpaired dermal bone that is kite or paddle-shape. Underlying the ethmoid, and slightly overlapping the parasphenoid posteriorly, the prevomer bears an anterolateral projection that terminates in a concave depression in which the preethmoids sit. GOC:mh ORCiD:0000-0001-9114-8737 vomer ZFIN:ZDB-PUB-961014-192 The portion of the YSL that is outside of the blastoderm margin during epiboly. TAO:0000309 E-YSL zebrafish_anatomy ZFA:0000309 external yolk syncytial layer ZFA:0000309 The portion of the YSL that is outside of the blastoderm margin during epiboly. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 E-YSL ZFIN:ZDB-PUB-961014-576 Cranial nerve which exits the medulla oblongata and controls the lateral movement of the eye. The caudal and rostral roots fuse together and course rostrally once they are outside the brainstem. The abducens nerve innervates the lateral rectus extraocular muscle. TAO:0000310 CN-VI abducens nerve nervus abducens zebrafish_anatomy ZFA:0000310 cranial nerve VI ZFA:0000310 Cranial nerve which exits the medulla oblongata and controls the lateral movement of the eye. The caudal and rostral roots fuse together and course rostrally once they are outside the brainstem. The abducens nerve innervates the lateral rectus extraocular muscle. GOC:mh GOC:ymb ISBN:3764351209 ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-131119-12 Is a mandibular muscle that consists of three subdivisions A1, A2, and A3. All three originate on the hyomandibula and suspensorium but each has a distinct insertion. A1 inserts on the maxilla, A2 inserts along the caudal margin of the articular and A3 inserts on the medial surface of the articular. TAO:0000311 zebrafish_anatomy ZFA:0000311 adductor mandibulae complex ZFA:0000311 Is a mandibular muscle that consists of three subdivisions A1, A2, and A3. All three originate on the hyomandibula and suspensorium but each has a distinct insertion. A1 inserts on the maxilla, A2 inserts along the caudal margin of the articular and A3 inserts on the medial surface of the articular. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070330-4 Sensory trigeminal nucleus located at the tectal ventricle near the synencephalon and optic tectum that contains large pyriform neurons. The sensory fibers of the large pyriform neurons that run peripherally in the trigeminal nerve. TAO:0000312 mesencephalic nuclei of trigeminal nerves zebrafish_anatomy ZFA:0000312 mesencephalic nucleus of trigeminal nerve ZFA:0000312 Sensory trigeminal nucleus located at the tectal ventricle near the synencephalon and optic tectum that contains large pyriform neurons. The sensory fibers of the large pyriform neurons that run peripherally in the trigeminal nerve. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-1280 mesencephalic nuclei of trigeminal nerves Series of paired muscles that have a distal attachment at the lateral base of each ray and a proximal attachment to the hypaxialis. The left and right inclinators attach the integument and trunk muscles to the base of each ray. TAO:0000313 anal inclinators inclinatores anales zebrafish_anatomy ZFA:0000313 anal inclinator ZFA:0000313 Series of paired muscles that have a distal attachment at the lateral base of each ray and a proximal attachment to the hypaxialis. The left and right inclinators attach the integument and trunk muscles to the base of each ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 anal inclinators inclinatores anales ZFIN:ZDB-PUB-171118-8 One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The anterior semicircular canal is associated with the anterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) ZFA:0000675 TAO:0000314 anterior semicircular canals anterior semicircular duct rostral vertical semicircular canal zebrafish_anatomy ZFA:0000314 anterior semicircular canal ZFA:0000314 One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The anterior semicircular canal is associated with the anterior crista. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 anterior semicircular canals Otolith part of lagena. TAO:0000315 lagenar otolith lagenolith zebrafish_anatomy ZFA:0000315 asteriscus ZFA:0000315 Otolith part of lagena. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020403-4 Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch, the 'tongue' of the a fish. Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals. TAO:0000316 basihyoid glossohyal zebrafish_anatomy basihyal ZFA:0000316 basihyal bone ZFA:0000316 Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch, the 'tongue' of the a fish. Ossification of the cartilaginous basihyal is first visible at the posterior end of the club-shaped basihyal cartilage (6.0 mm). Ossification spreads throughout the cartilage, except for the anterior tip, which remains cartilaginous. The posteroventral tip extends between the left and right dorsal hypohyals. GOC:cvs ORCiD:0000-0002-2244-7917 The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins. TAO:0000317 axial skeleton zebrafish_anatomy ZFA:0000317 postcranial axial skeleton ZFA:0000317 The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins. GOC:mh ORCiD:0000-0001-9114-8737 CNS white matter that is part of the brain stem or spinal cord. TAO:0000318 brain stem and spinal tract/commissure brain stem/spinal tracts and commissures zebrafish_anatomy ZFA:0000318 brainstem and spinal white matter ZFA:0000318 CNS white matter that is part of the brain stem or spinal cord. GOC:mh ORCiD:0000-0001-9114-8737 brain stem/spinal tracts and commissures The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber. TAO:0000319 branchiostegal membranes zebrafish_anatomy ZFA:0000319 branchiostegal membrane ZFA:0000319 The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber. http://www.fishbase.org/glossary/Glossary.php?q=branchiostegal+membrane branchiostegal membranes Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain. TAO:0000320 posterior commissure zebrafish_anatomy PC ZFA:0000320 caudal commissure ZFA:0000320 Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000321 caudal levators zebrafish_anatomy ZFA:0000321 caudal levator ZFA:0000321 caudal levators TAO:0000322 caudal octaval nuclei zebrafish_anatomy ZFA:0000322 caudal octaval nucleus ZFA:0000322 caudal octaval nuclei Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesethmoid meets the preethmoids in synchondroses. TAO:0000323 ethmoid bone zebrafish_anatomy ZFA:0000323 mesethmoid bone ZFA:0000323 Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesethmoid meets the preethmoids in synchondroses. GOC:mh ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is part of the caudal hypothalamus and surrounds the paired posterior ventricular recesses of the third ventricle. From Neuroanatomy of the Zebrafish Brain. TAO:0000324 caudal zone of periventricular hypothalamus nucleus periventricularis hypothalami, zona caudalis zebrafish_anatomy ZFA:0000324 caudal periventricular hypothalamus ZFA:0000324 Diencephalic nucleus which is part of the caudal hypothalamus and surrounds the paired posterior ventricular recesses of the third ventricle. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is part of the caudal tuberculum. It is targeted by ascending fibers originating from the secondary gustatory/ visceral complex. TAO:0000325 posterior thalamic nucleus zebrafish_anatomy ZFA:0000325 caudal thalamic nucleus ZFA:0000325 Diencephalic nucleus which is part of the caudal tuberculum. It is targeted by ascending fibers originating from the secondary gustatory/ visceral complex. GOC:cvs GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-160628-14 Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae. TAO:0000326 caudal vertebrae mid caudal vertebra zebrafish_anatomy ZFA:0000326 caudal vertebra ZFA:0000326 Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae. GOC:mh ORCiD:0000-0001-9114-8737 caudal vertebrae TAO:0000327 zebrafish_anatomy ZFA:0000327 central zone of the optic tectum ZFA:0000327 Musculature system of the pharyngeal and head regions. TAO:0000328 zebrafish_anatomy head muscles ZFA:0000328 cephalic musculature ZFA:0000328 Musculature system of the pharyngeal and head regions. GOC:cvs ORCiD:0000-0002-2244-7917 The egg shell. TAO:0000329 zebrafish_anatomy ZFA:0000329 chorion ZFA:0000329 The egg shell. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 Space proximal to the urogenital pore where the pronephric duct, intestine and the oviduct or sperm duct empties. TAO:0000330 cloaca lumen zebrafish_anatomy ZFA:0000330 cloacal chamber ZFA:0000330 Space proximal to the urogenital pore where the pronephric duct, intestine and the oviduct or sperm duct empties. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0000331 commissura infima Halleri commissura infima of Haller zebrafish_anatomy ZFA:0000331 commissure infima of Haller ZFA:0000331 Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired. TAO:0000332 coracoids zebrafish_anatomy scapulocoracoid ZFA:0000332 coracoid ZFA:0000332 Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired. TAO:GA_TG coracoids TAO:0000333 zebrafish_anatomy ZFA:0000333 mesovarium ZFA:0000333 Brain structure which is located ventrolaterally to the caudal preglomerular nucleus and in the dorsomedial aspect of the caudal protrusion of the inferior lobe of the hypothalamus. From Neuroanatomy of the Zebrafish Brain. TAO:0000334 mammillary body zebrafish_anatomy ZFA:0000334 corpus mamillare ZFA:0000334 Brain structure which is located ventrolaterally to the caudal preglomerular nucleus and in the dorsomedial aspect of the caudal protrusion of the inferior lobe of the hypothalamus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000335 tractus tectobulbaris cruciatus zebrafish_anatomy ZFA:0000335 crossed tecto-bulbar tract ZFA:0000335 ZFA:0000364 zebrafish_anatomy ZFA:0000336 hypural arches true ZFA:0000336 zebrafish_anatomy ZFA:0000337 Doesn't seem to exist in zebrafish. dermopalatine true ZFA:0000337 CNS white matter that is part of the diencephalon. TAO:0000338 diencephalic tract/commissure zebrafish_anatomy ZFA:0000338 diencephalic white matter ZFA:0000338 CNS white matter that is part of the diencephalon. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical system that processes ingested substances. TAO:0000339 zebrafish_anatomy ZFA:0000339 digestive system ZFA:0000339 Anatomical system that processes ingested substances. GOC:mh ORCiD:0000-0001-9114-8737 Peripheral nucleus of the ventral telencephalon which is a band of tightly packed cells starting at the level of the anterior commissure and disappearing more rostrally. May be homologous to the intermediate nucleus of the area ventralis of other species. From Neuroanatomy of the Zebrafish Brain. TAO:0000340 ENd endopeduncular nucleus, dorsal part entopeduncular nucleus, dorsal part nucleus entopeduncularis, pars dorsalis zebrafish_anatomy ZFA:0000340 dorsal entopeduncular nucleus of ventral telencephalon ZFA:0000340 Peripheral nucleus of the ventral telencephalon which is a band of tightly packed cells starting at the level of the anterior commissure and disappearing more rostrally. May be homologous to the intermediate nucleus of the area ventralis of other species. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae, then extend toward the dorsal base of the caudal fin where they insert broadly on fin rays. TAO:0000341 dorsal flexors flexor caudalis dorsalis inferioris zebrafish_anatomy CDI dorsal flexor ZFA:0000341 inferior caudal dorsal flexor ZFA:0000341 Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae, then extend toward the dorsal base of the caudal fin where they insert broadly on fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 dorsal flexors Muscle of the dorsal fin that are thin, arise from the lateral edge of fin bases, and attach to the skin just above the epaxial muscle. The inclinator muscles bend the fin sideways. There is one dorsal inclinator for each dorsal fin lepidotrichium. TAO:0000342 dorsal inclinators inclinator dorsalis zebrafish_anatomy ZFA:0000342 dorsal inclinator ZFA:0000342 Muscle of the dorsal fin that are thin, arise from the lateral edge of fin bases, and attach to the skin just above the epaxial muscle. The inclinator muscles bend the fin sideways. There is one dorsal inclinator for each dorsal fin lepidotrichium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 dorsal inclinators Periventricular nucleus which lies rostral to the anterior commissure and is contiguous caudally with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000343 area ventralis telencephali, nucleus dorsalis dorsal nucleus of V zebrafish_anatomy Vd dorsal division of ventral telencephalic area ZFA:0000343 dorsal nucleus of ventral telencephalon ZFA:0000343 Periventricular nucleus which lies rostral to the anterior commissure and is contiguous caudally with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Vd ZFIN:ZDB-PUB-961014-1280 One of eight distinct lateral lines in the 4-day larva positioned posterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000344 middle lateral lines zebrafish_anatomy ZFA:0000344 middle lateral line ZFA:0000344 One of eight distinct lateral lines in the 4-day larva positioned posterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 middle lateral lines Extraocular muscle that inserts at the scleral corneal junction on the dorsal side of the eye. The dorsal rectus is innervated by the oculomotor nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions in the adult eye though they have distinct insertion sites in 5dpf fish. TAO:0000345 dorsal recti superior rectus zebrafish_anatomy ZFA:0000345 Mature form at Larval:Protruding-mouth. dorsal rectus ZFA:0000345 Extraocular muscle that inserts at the scleral corneal junction on the dorsal side of the eye. The dorsal rectus is innervated by the oculomotor nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions in the adult eye though they have distinct insertion sites in 5dpf fish. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111205-9 dorsal recti superior rectus ZFIN:ZDB-PUB-110512-18 Tegmental nucleus that is immediately adjacent to the nucleus lateralis valvulae (NLV). This nucleus is sometimes considered part of the NLV but the cells are more densely packed. The nucleus extends rostrally into the mesencephalon. TAO:0000346 nucleus tegmentalis dorsalis zebrafish_anatomy DTN ZFA:0000346 dorsal tegmental nucleus ZFA:0000346 Tegmental nucleus that is immediately adjacent to the nucleus lateralis valvulae (NLV). This nucleus is sometimes considered part of the NLV but the cells are more densely packed. The nucleus extends rostrally into the mesencephalon. ZFIN:ZDB-PUB-961014-1280 Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain. TAO:0000347 zebrafish_anatomy ZFA:0000347 dorsal hypothalamic zone ZFA:0000347 Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 zebrafish_anatomy ZFA:0000348 duodenum true ZFA:0000348 Skeletal muscle that is the dorsal-most component of the body musculature. The anterior region attaches to the back of the cranial vault and the dorsal region of the pectoral girdle. The epaxialis is bound to the skin by fibrous connective tissue and internally it inserts over the dorsal portion of the vertebral centra and fin pterygiophores and the neural spines. Posteriorly the epaxialis overlies the modified muscle of the caudal fin and inserts onto the dorsal ray bases of the fin. The anterior epaxial plays a role in feeding and the posterior region is central to locomotion. TAO:0000349 zebrafish_anatomy ZFA:0000349 epaxialis ZFA:0000349 Skeletal muscle that is the dorsal-most component of the body musculature. The anterior region attaches to the back of the cranial vault and the dorsal region of the pectoral girdle. The epaxialis is bound to the skin by fibrous connective tissue and internally it inserts over the dorsal portion of the vertebral centra and fin pterygiophores and the neural spines. Posteriorly the epaxialis overlies the modified muscle of the caudal fin and inserts onto the dorsal ray bases of the fin. The anterior epaxial plays a role in feeding and the posterior region is central to locomotion. GOC:cvs ISBN:0125296509 ORCiD:0000-0002-2244-7917 Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally. TAO:0000350 epipleurals zebrafish_anatomy ZFA:0000350 epipleural ZFA:0000350 Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally. GOC:mh ORCiD:0000-0001-9114-8737 epipleurals Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ. TAO:0000351 ethmoid region zebrafish_anatomy ZFA:0000351 olfactory region ZFA:0000351 Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue which is located between the glomerular layer and internal cellular layer of the olfactory bulb, and contains large mitral cells whose efferent axons form most of the lateral and medial olfactory tracts. From Neuroanatomy of the Zebrafish Brain. TAO:0000352 stratum cellulare externum bulbi olfactorii zebrafish_anatomy ZFA:0000352 external cellular layer ZFA:0000352 Portion of tissue which is located between the glomerular layer and internal cellular layer of the olfactory bulb, and contains large mitral cells whose efferent axons form most of the lateral and medial olfactory tracts. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Paired fasciculus that connects the habenula to the interpeduncular nucleus. In zebrafish the fascicles seem to gather under the raphe nucleus and don't extend to the medulla. TAO:0000353 fasciculus retroflexi habenulo-interpeduncular tract habenulointerpeduncular tract tractus habenulo-interpeduncularis zebrafish_anatomy ZFA:0000353 fasciculus retroflexus ZFA:0000353 Paired fasciculus that connects the habenula to the interpeduncular nucleus. In zebrafish the fascicles seem to gather under the raphe nucleus and don't extend to the medulla. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-010601-11 fasciculus retroflexi Compound organ that consists of gill filaments, gill lamellae, gill rakers and pharyngeal arches 3-7. The gills are responsible for primary gas exchange between the blood and the surrounding water. TAO:0000354 gills zebrafish_anatomy ZFA:0000354 gill ZFA:0000354 Compound organ that consists of gill filaments, gill lamellae, gill rakers and pharyngeal arches 3-7. The gills are responsible for primary gas exchange between the blood and the surrounding water. http:http://www.briancoad.com/Dictionary/DicPics/gill.htm gills Roof plate that is part of the midbrain. TAO:0000355 zebrafish_anatomy ZFA:0000355 roof plate midbrain region ZFA:0000355 Roof plate that is part of the midbrain. GOC:CVS GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7. They support the gills. The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth. TAO:0000356 gill rakers zebrafish_anatomy ZFA:0000356 gill raker ZFA:0000356 Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7. They support the gills. The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth. ZFIN:ZDB-PUB-081008-12 http://www.briancoad.com/Dictionary/G.htm gill rakers Multi-tissue structure which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain. TAO:0000357 stratum glomerulosum bulbi olfactorii zebrafish_anatomy ZFA:0000357 glomerular layer ZFA:0000357 Multi-tissue structure which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Portion of tissue which is the innermost layer of the corpus cerebelli and consists of small granule cells and larger Golgi cells. The granule cell receive excitatory input from the mossy fibers, and send parallel fibers to the molecular layer where they synapse with Purkinje cell dendrites. TAO:0000358 zebrafish_anatomy ZFA:0000358 granular layer corpus cerebelli ZFA:0000358 Portion of tissue which is the innermost layer of the corpus cerebelli and consists of small granule cells and larger Golgi cells. The granule cell receive excitatory input from the mossy fibers, and send parallel fibers to the molecular layer where they synapse with Purkinje cell dendrites. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0000359 commissura habenularum zebrafish_anatomy ZFA:0000359 habenular commissure ZFA:0000359 Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation. TAO:0000360 zebrafish_anatomy ZFA:0000360 heart tube ZFA:0000360 Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation. ZFIN:ZDB-PUB-010219-2 true ZFA:0000361 The hypaxialis consists of that part of the body musculature lying ventral to the midlateral horizontal septum. TAO:0000362 zebrafish_anatomy ZFA:0000362 hypaxialis ZFA:0000362 The hypaxialis consists of that part of the body musculature lying ventral to the midlateral horizontal septum. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-151106-17 Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials. TAO:0000363 hypobranchial bones zebrafish_anatomy ZFA:0000363 hypobranchial bone ZFA:0000363 Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials. GOC:mh ORCiD:0000-0001-9114-8737 hypobranchial bones Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length). TAO:0000364 hyp hypuralia hypurals zebrafish_anatomy ZFA:0000364 hypural ZFA:0000364 Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length). ZFIN:ZDB-PUB-011008-1 hypurals Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish. TAO:0000365 nasal bones zebrafish_anatomy ZFA:0000365 nasal bone ZFA:0000365 Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish. ZFIN:ZDB-PUB-961014-192 nasal bones Hindbrain nucleus that provides descending innervation to the brainstem and spinal cord. Early in development the inferior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections inferior raphe nucleus are restricted to posterior. TAO:0000366 posterior raphe nucleus zebrafish_anatomy ZFA:0000366 inferior raphe nucleus ZFA:0000366 Hindbrain nucleus that provides descending innervation to the brainstem and spinal cord. Early in development the inferior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections inferior raphe nucleus are restricted to posterior. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-081114-19 ZFA:0001410 zebrafish_anatomy ZFA:0000367 infraorbital bridge true ZFA:0000367 The outer protective barrier that separates the animal from its aquatic environment. TAO:0000368 skin zebrafish_anatomy ZFA:0000368 integument ZFA:0000368 The outer protective barrier that separates the animal from its aquatic environment. ZFIN:ZDB-PUB-040726-12 Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles. TAO:0000369 zebrafish_anatomy intermandibular muscle ZFA:0000369 intermandibularis ZFA:0000369 Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles. GOC:ymb ORCiD:0000-0002-9900-7880 intermandibular muscle ZFIN:ZDB-PUB-060921-12 TAO:0000370 intermediate thalamic nuclei zebrafish_anatomy ZFA:0000370 intermediate thalamic nucleus ZFA:0000370 intermediate thalamic nuclei TAO:0000371 internal pharyngoclavicularae zebrafish_anatomy ZFA:0000371 internal pharyngoclavicularis ZFA:0000371 internal pharyngoclavicularae TAO:0000372 zebrafish_anatomy ZFA:0000372 interpeduncular nucleus medulla oblongata ZFA:0000372 ZFS:0000042 ZFS:0000043 zebrafish_anatomy ZFA:0000373 obsolete juvenile true ZFA:0000373 Otolith organ comprised of the macula lagena and asteriscus. The lagena is part of the pars inferior. The lagena functions in the detection of sound. TAO:0000374 lagenas zebrafish_anatomy ZFA:0000374 lagena ZFA:0000374 Otolith organ comprised of the macula lagena and asteriscus. The lagena is part of the pars inferior. The lagena functions in the detection of sound. GOC:ymb ORCiD:0000-0002-9900-7880 lagenas ZFA:0000557 ZFA:0000586 ZFA:0001583 zebrafish_anatomy ZFA:0000375 last preural centrum true ZFA:0000375 Dermal bone that is situated under or posterior to the eye and associated with the infraorbital sensory canal. ZFA:0000489 TAO:0000376 zebrafish_anatomy ZFA:0000376 infraorbital ZFA:0000376 Dermal bone that is situated under or posterior to the eye and associated with the infraorbital sensory canal. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0000377 true ZFA:0000378 Portion of the lateral forebrain bundle that lies in the diencephalon. TAO:0000379 lateral forebrain bundles diencephalon zebrafish_anatomy ZFA:0000379 lateral forebrain bundle diencephalon ZFA:0000379 Portion of the lateral forebrain bundle that lies in the diencephalon. GOC:cvs ORCiD:0000-0002-2244-7917 lateral forebrain bundles diencephalon TAO:0000380 lateral lemniscus nuclei zebrafish_anatomy ZFA:0000380 lateral lemniscus nucleus ZFA:0000380 lateral lemniscus nuclei TAO:0000381 lateral line sensory nuclei zebrafish_anatomy ZFA:0000381 lateral line sensory nucleus ZFA:0000381 lateral line sensory nuclei Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. CARO:0000040 TAO:0000382 acellular anatomical structures zebrafish_anatomy ZFA:0000382 acellular anatomical structure ZFA:0000382 Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. GOC:mh ORCiD:0000-0001-9114-8737 acellular anatomical structures Extraocular muscle that runs parallel to the long axis of the fish and inserts on the caudal side of the eye at the sclera-corneal . The lateral rectus muscles originate substantially posterior to the other rectus muscles. The lateral rectus is innervated by the abducens nerve. The unsegmented paraxial head mesoderm contributes to the lateral rectus. TAO:0000383 lateral recti posterior rectus zebrafish_anatomy ZFA:0000383 Mature form at Hatching:Pec-fin. lateral rectus ZFA:0000383 Extraocular muscle that runs parallel to the long axis of the fish and inserts on the caudal side of the eye at the sclera-corneal . The lateral rectus muscles originate substantially posterior to the other rectus muscles. The lateral rectus is innervated by the abducens nerve. The unsegmented paraxial head mesoderm contributes to the lateral rectus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111205-9 lateral recti posterior rectus ZFIN:ZDB-PUB-970121-6 Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics. TAO:0000384 levators arcus palatini zebrafish_anatomy ZFA:0000384 levator arcus palatini ZFA:0000384 Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 levators arcus palatini The lymphatic system consists of blind-ended vessels, fluid and macromolecules collected from interstitial tissue space that serve as a conduit for the development and transport of lymphoid cells. TAO:0000385 zebrafish_anatomy ZFA:0000385 lymphatic system ZFA:0000385 The lymphatic system consists of blind-ended vessels, fluid and macromolecules collected from interstitial tissue space that serve as a conduit for the development and transport of lymphoid cells. ZFIN:ZDB-PUB-130322-28 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) TAO:0000386 maculae sensory macula sensory patch zebrafish_anatomy ZFA:0000386 macula ZFA:0000386 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 maculae motor nucleus X motor nucleus of X nX nucleus motorius of nervi vagi zebrafish_anatomy vagal lobe ZFA:0000387 This term split from vagal lobe. Merged before 1996. motor nucleus of vagal nerve ZFA:0000387 Brain structure which is part of the vestibulolateralis lobe of the cerebellum. The medial caudal lobe receives primary octaval (presumably vestibular) as well as lateral line projections. From Neuroanatomy of the Zebrafish Brain. TAO:0000388 caudal lobe of cerebellum lobus caudalis cerebelli zebrafish_anatomy ZFA:0000388 medial caudal lobe ZFA:0000388 Brain structure which is part of the vestibulolateralis lobe of the cerebellum. The medial caudal lobe receives primary octaval (presumably vestibular) as well as lateral line projections. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000389 zebrafish_anatomy ZFA:0000389 medial funicular nucleus medulla oblongata ZFA:0000389 Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. TAO:0000390 medial preglomerular nuclei zebrafish_anatomy ZFA:0000390 medial preglomerular nucleus ZFA:0000390 Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 medial preglomerular nuclei Telencephalic nucleus which is medially located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000391 Dm area dorsalis telencephali, zona medialis medial zone of D medial zone of dorsal telencephalic area zebrafish_anatomy ZFA:0000391 medial zone of dorsal telencephalon ZFA:0000391 Telencephalic nucleus which is medially located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Dm ZFIN:ZDB-PUB-150226-6 Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain. TAO:0000392 zebrafish_anatomy ZFA:0000392 median tuberal portion ZFA:0000392 Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 A mesh-like cell arrangement, less compact than an epithelium. TAO:0000393 zebrafish_anatomy ZFA:0000393 mesenchyme ZFA:0000393 A mesh-like cell arrangement, less compact than an epithelium. ZFIN:ZDB-PUB-961014-576 Portion of tissue which is the outermost layer of the corpus cerebelli and consists largely of axons and dendrites. Other cell types such as stellate and basket neurons are also found in the molecular layer. TAO:0000394 zebrafish_anatomy ZFA:0000394 molecular layer corpus cerebelli ZFA:0000394 Portion of tissue which is the outermost layer of the corpus cerebelli and consists largely of axons and dendrites. Other cell types such as stellate and basket neurons are also found in the molecular layer. GOC:mh ORCiD:0000-0001-9114-8737 Muscle pioneer cell part of somite 2. TAO:0000395 muscle pioneers somite 2 zebrafish_anatomy ZFA:0000395 muscle pioneer somite 2 ZFA:0000395 Muscle pioneer cell part of somite 2. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 2 A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). TAO:0000396 zebrafish_anatomy ZFA:0000396 nervous system ZFA:0000396 A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). GOC:mh ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is part of the caudal tuberculum. In trout the nucleus subglomerulosis receives gustatory information. TAO:0000397 zebrafish_anatomy ZFA:0000397 nucleus subglomerulosis ZFA:0000397 Diencephalic nucleus which is part of the caudal tuberculum. In trout the nucleus subglomerulosis receives gustatory information. GOC:cvs GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 PMID:11923003 The nucleus isthmi is a hindbrain nucleus located in the tegmentum of rhombomere 1 close to the secondary gustatory nucleus. It projects to and receives excitatory visual input from the ipsilateral optic tectum and the parvocellular and/or magnocellular superficial pretectal nucleus. TAO:0000398 zebrafish_anatomy ZFA:0000398 nucleus isthmi ZFA:0000398 The nucleus isthmi is a hindbrain nucleus located in the tegmentum of rhombomere 1 close to the secondary gustatory nucleus. It projects to and receives excitatory visual input from the ipsilateral optic tectum and the parvocellular and/or magnocellular superficial pretectal nucleus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-100601-20 Nucleus that lies rostral to the isthmic primary nucleus. TAO:0000399 secondary gustatory nucleus trigeminal nuclei zebrafish_anatomy ZFA:0000399 secondary gustatory nucleus trigeminal nucleus ZFA:0000399 Nucleus that lies rostral to the isthmic primary nucleus. ZFIN:ZDB-PUB-961014-1280 secondary gustatory nucleus trigeminal nuclei One of eight distinct lateral lines in the 4-day larva positioned dorsal to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000400 supratemporal lateral line zebrafish_anatomy ZFA:0000400 occipital lateral line ZFA:0000400 One of eight distinct lateral lines in the 4-day larva positioned dorsal to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 TAO:0000401 cranial nerve VIII sensory nucleus octaval nerve sensory nuclei zebrafish_anatomy ZFA:0000401 octaval nerve sensory nucleus ZFA:0000401 octaval nerve sensory nuclei Brain structure which is the paired anteriormost part of the telencephalon and are connected to the telencephalon by two tracts carrying secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. The olfactory bulb is a paired structure. TAO:0000402 bulbus olfactorius olfactory lobe zebrafish_anatomy ZFA:0000402 olfactory bulb ZFA:0000402 Brain structure which is the paired anteriormost part of the telencephalon and are connected to the telencephalon by two tracts carrying secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain. The olfactory bulb is a paired structure. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 bulbus olfactorius ZFIN:ZDB-PUB-961014-1280 Female reproductive organ. The ovary is a bilobed cavitated organ located ventral to the swim bladder. TAO:0000403 ovaries zebrafish_anatomy ZFA:0000403 ovary ZFA:0000403 Female reproductive organ. The ovary is a bilobed cavitated organ located ventral to the swim bladder. GOC:cvs GOC:mh ISBN:0199638098 ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ovaries Diencephalic nucleus that is part of the synencephalon and is located adjacent to the caudal commissure. From Neuroanatomy of the Zebrafish Brain. TAO:0000404 zebrafish_anatomy ZFA:0000404 paracommissural nucleus ZFA:0000404 Diencephalic nucleus that is part of the synencephalon and is located adjacent to the caudal commissure. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Cranial nerve which innervates muscles of the ocular motor system. The oculomotor nerve innervates the inferior oblique, inferior rectus, medial rectus and superior rectus extraocular muscles. TAO:0000405 CN-III occulomotor oculomotor nerve zebrafish_anatomy ZFA:0000405 cranial nerve III ZFA:0000405 Cranial nerve which innervates muscles of the ocular motor system. The oculomotor nerve innervates the inferior oblique, inferior rectus, medial rectus and superior rectus extraocular muscles. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-131119-12 Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain. TAO:0000406 parvocellular superficial pretectal nuclei zebrafish_anatomy ZFA:0000406 parvocellular superficial pretectal nucleus ZFA:0000406 Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 parvocellular superficial pretectal nuclei Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones. TAO:0000407 pectoral girdles zebrafish_anatomy ZFA:0000407 pectoral girdle ZFA:0000407 Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones. TAO:WD pectoral girdles Diencephalic nucleus which is located between the ventral thalamus and the hypothalamus. From Neuroanatomy of the Zebrafish Brain. TAO:0000408 periventricular nucleus of posterior tuberculum zebrafish_anatomy TPp ZFA:0000408 periventricular nucleus of caudal tuberculum ZFA:0000408 Diencephalic nucleus which is located between the ventral thalamus and the hypothalamus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 true ZFA:0000409 Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts. TAO:0000410 postcleithra zebrafish_anatomy ZFA:0000410 postcleithrum ZFA:0000410 Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts. GOC:cvs ORCiD:0000-0002-2244-7917 postcleithra Is an otic epithelium that will mature into the posterior crista. TAO:0000411 posterior crista primordia zebrafish_anatomy ZFA:0000411 posterior crista primordium ZFA:0000411 Is an otic epithelium that will mature into the posterior crista. GOC:ymb ORCiD:0000-0002-9900-7880 posterior crista primordia Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the posterior semicircular canal. TAO:0000412 zebrafish_anatomy posterior semicircular canal primordia posterior semicircular canal primordium ZFA:0000412 otic vesicle posterior protrusion ZFA:0000412 Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the posterior semicircular canal. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-090330-11 posterior semicircular canal primordia The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis). TAO:0000413 gonads zebrafish_anatomy mature gonad ZFA:0000413 gonad ZFA:0000413 The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis). GOC:mh ORCiD:0000-0001-9114-8737 gonads Embryonic structure that is fated to become cephalic mesoderm. TAO:0000414 zebrafish_anatomy ZFA:0000414 presumptive cephalic mesoderm ZFA:0000414 Embryonic structure that is fated to become cephalic mesoderm. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Sphincter at the junction of the esophagus and pneumatic duct. TAO:0000415 oesophagial sphincter zebrafish_anatomy ZFA:0000415 esophageal sphincter ZFA:0000415 Sphincter at the junction of the esophagus and pneumatic duct. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Presumptive structure fated to become endoderm. Determined by fate mapping. TAO:0000416 zebrafish_anatomy ZFA:0000416 presumptive endoderm ZFA:0000416 Presumptive structure fated to become endoderm. Determined by fate mapping. ZFIN:ZDB-PUB-961014-608 Embryonic structure part of the posterior presumptive neural plate that is fated to become the spinal cord. TAO:0000417 presumptive spinal cord neural keel presumptive spinal cord neural plate presumptive spinal cord neural rod zebrafish_anatomy ZFA:0000417 presumptive spinal cord ZFA:0000417 Embryonic structure part of the posterior presumptive neural plate that is fated to become the spinal cord. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure that is the dorsal part of the diencephalon, caudal to the telencephalon, rostral to the midbrain optic tectum; the major sensory input to the pretectum is visual. From The Laboratory Fish. TAO:0000418 zebrafish_anatomy ZFA:0000418 pretectum ZFA:0000418 Multi-tissue structure that is the dorsal part of the diencephalon, caudal to the telencephalon, rostral to the midbrain optic tectum; the major sensory input to the pretectum is visual. From The Laboratory Fish. GOC:mh ISBN:0125296509 ORCiD:0000-0001-9114-8737 Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. TAO:0000419 pterosphenoids zebrafish_anatomy ZFA:0000419 pterosphenoid ZFA:0000419 Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. GOC:mh ORCiD:0000-0001-9114-8737 pterosphenoids TAO:0000420 renal arteries zebrafish_anatomy ZFA:0000420 renal artery ZFA:0000420 renal arteries Reticular formation is a complex network of neurons and diffuse nuclei that extends from the spinal cord centrally along the length of the brain to the mesencephalon. It s a dense, almost impenetrable network of seemingly random scattered nerve cells. The reticular formation integrates sensory inputs. TAO:0000421 zebrafish_anatomy ZFA:0000421 reticular formation ZFA:0000421 Reticular formation is a complex network of neurons and diffuse nuclei that extends from the spinal cord centrally along the length of the brain to the mesencephalon. It s a dense, almost impenetrable network of seemingly random scattered nerve cells. The reticular formation integrates sensory inputs. ISBN:0865777101 The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly. TAO:0000422 retroarticulars zebrafish_anatomy ZFA:0000422 retroarticular ZFA:0000422 The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly. GOC:ymb ORCiD:0000-0002-9900-7880 retroarticulars Vein that joins with the posterior cardinal vein to form the common cardinal vein. The anterior cardinal vein (ACV) connects to the primordial hindbrain channel at early stages. At later stages the posterior cerebral vein (PCeV) and the pectoral vein (PV) drain into ACV. The rostral portion of the ACV connects to the primary head sinus (PHS) at 2.5dpf, the PHS is sometimes considered an extension of the ACV. TAO:0000423 ACV rostral cardinal vein zebrafish_anatomy ZFA:0000423 anterior cardinal vein ZFA:0000423 Vein that joins with the posterior cardinal vein to form the common cardinal vein. The anterior cardinal vein (ACV) connects to the primordial hindbrain channel at early stages. At later stages the posterior cerebral vein (PCeV) and the pectoral vein (PV) drain into ACV. The rostral portion of the ACV connects to the primary head sinus (PHS) at 2.5dpf, the PHS is sometimes considered an extension of the ACV. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000424 opercular lateral lines zebrafish_anatomy ZFA:0000424 opercular lateral line ZFA:0000424 One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 opercular lateral lines Cranial nerve which enters the brain between cranial nerves VI and VII and projects to a dorsal medullary area between cerebellum and vagal lobe. Contains afferents and sensory efferents to the anterior lateral line ganglia. From Neuroanatomy of the Zebrafish Brain. TAO:0000425 ALLn nervi lineae lateralis anterioris rostral lateral line nerve zebrafish_anatomy ZFA:0000425 anterior lateral line nerve ZFA:0000425 Cranial nerve which enters the brain between cranial nerves VI and VII and projects to a dorsal medullary area between cerebellum and vagal lobe. Contains afferents and sensory efferents to the anterior lateral line ganglia. From Neuroanatomy of the Zebrafish Brain. GOC:ymb ISBN:3764351209 ORCiD:0000-0002-9900-7880 Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000426 anterior parvocellular preoptic nucleus rostral parvocellular preoptic nuclei zebrafish_anatomy ZFA:0000426 rostral parvocellular preoptic nucleus ZFA:0000426 Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 rostral parvocellular preoptic nuclei Diencephalic nucleus which is located in the anterior portion of the dorsal thalamus. TAO:0000427 anterior thalamic nucleus nucleus anterior thalami zebrafish_anatomy ZFA:0000427 rostral thalamic nucleus ZFA:0000427 Diencephalic nucleus which is located in the anterior portion of the dorsal thalamus. GOC:mh ORCiD:0000-0001-9114-8737 Otolith organ comprised of the macula saccule and sagitta. The lagena is part of the pars inferior. The saccule functions in the detection of sound and movement. TAO:0000428 sacculus zebrafish_anatomy ZFA:0000428 saccule ZFA:0000428 Otolith organ comprised of the macula saccule and sagitta. The lagena is part of the pars inferior. The saccule functions in the detection of sound and movement. GOC:ymb ORCiD:0000-0002-9900-7880 The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process. TAO:0000429 zebrafish_anatomy ZFA:0000429 scaphium ZFA:0000429 The scaphium is a modification of NA 1 in which the neural arch is reduced and fused to a cup-shaped ossification of membrane bone, the concha. The second Weberian ossicle, consisting of three parts: the concha, the ascending process, and the articulating process. GOC:mh ORCiD:0000-0001-9114-8737 White matter connecting the primary gustatory nuclei to the secondary gustatory nucleus in the isthmus. TAO:0000430 zebrafish_anatomy ZFA:0000430 secondary gustatory tract ZFA:0000430 White matter connecting the primary gustatory nuclei to the secondary gustatory nucleus in the isthmus. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-1280 Fluid-filled semicircular tubes, arranged orthogonally to each other in the inner ear. Each canal is associated with a crista that detects angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) TAO:0000431 scc semicircular canals semicircular duct zebrafish_anatomy ZFA:0000431 semicircular canal ZFA:0000431 Fluid-filled semicircular tubes, arranged orthogonally to each other in the inner ear. Each canal is associated with a crista that detects angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 semicircular canals true ZFA:0000432 TAO:0000433 sensory trigeminal nuclei zebrafish_anatomy NVs ZFA:0000433 sensory trigeminal nucleus ZFA:0000433 sensory trigeminal nuclei TAO:0000434 zebrafish_anatomy ZFA:0000434 skeletal system ZFA:0000434 Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which the axons cross the midline and after which the structure is termed the optic tract. TAO:0000435 CN-II optic optic nerve zebrafish_anatomy ZFA:0000435 cranial nerve II ZFA:0000435 Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which the axons cross the midline and after which the structure is termed the optic tract. GOC:mh ORCiD:0000-0001-9114-8737 Organ that filters the blood removing defective blood cells. The spleen is a dark red organ, located in the peritoneal cavity, adjacent to one of the liver lobes. The spleen consists of red pulp composed of erythrocytes and thrombocytes and white pulp, composed of macrophages, reticular cells and reticulin fibers. TAO:0000436 zebrafish_anatomy ZFA:0000436 spleen ZFA:0000436 Organ that filters the blood removing defective blood cells. The spleen is a dark red organ, located in the peritoneal cavity, adjacent to one of the liver lobes. The spleen consists of red pulp composed of erythrocytes and thrombocytes and white pulp, composed of macrophages, reticular cells and reticulin fibers. ZFIN:ZDB-PUB-110609-55 ZFA:0001076 TAO:0002121 zebrafish_anatomy ZFA:0000437 stomach true ZFA:0000437 Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the dorsal aorta passes. ZFA:0000562 TAO:0000438 parhyural phy zebrafish_anatomy ZFA:0000438 parhypural ZFA:0000438 Hemal arch and spine of preural centrum 1. The parhypural is defined as the most posterior hemal arch with an open canal through which the dorsal aorta passes. ZFIN:ZDB-PUB-011008-1 Ventral, superficial, paired muscle that originates from the posterior part of the protractor ishii tendon and the midline. At the midline the paired muscles contact each other. These are short muscles that attach to all pelvic fin rays except ray 1 and ray 2. TAO:0000439 abductor superficialis pelvicus superficial pelvic abductors zebrafish_anatomy ZFA:0000439 superficial pelvic abductor ZFA:0000439 Ventral, superficial, paired muscle that originates from the posterior part of the protractor ishii tendon and the midline. At the midline the paired muscles contact each other. These are short muscles that attach to all pelvic fin rays except ray 1 and ray 2. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 abductor superficialis pelvicus ZFIN:ZDB-PUB-171118-8 superficial pelvic abductors Hindbrain nucleus that is located in ventral rhombomeres 1-3 and gives rise to ascending fibers innervating most areas of the brain. Early in development, both the superior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections of superior raphe nucleus restricted to anterior. TAO:0000440 anterior raphe nucleus zebrafish_anatomy dorsal raphe nucleus ZFA:0000440 May be homologous to the dorsal raphe nucleus of human mouse and rat. ZDB-PUB-081008-18. superior raphe nucleus ZFA:0000440 Hindbrain nucleus that is located in ventral rhombomeres 1-3 and gives rise to ascending fibers innervating most areas of the brain. Early in development, both the superior raphe nucleus emits rostrally and caudally directed projections. However, in the adult, the long projections of superior raphe nucleus restricted to anterior. ZFIN:ZDB-PUB-081114-19 Diencephalic nucleus that is part of the preoptic area and is ventrolateral to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000441 zebrafish_anatomy ZFA:0000441 suprachiasmatic nucleus ZFA:0000441 Diencephalic nucleus that is part of the preoptic area and is ventrolateral to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001). TAO:0000442 sn zebrafish_anatomy ZFA:0000442 supraneural ZFA:0000442 Supraneurals independent, median, elongate, rod-like cartilages or bones in the dorsal skeletogenous septum between the cranium and the dorsal fin. In actinopterygians, supraneurals develop from cartilages that are independent of the neural spine (Arratia et al., 2001). GOC:mh ORCiD:0000-0001-9114-8737 One of eight distinct lateral lines in the 4-day larva consisting of three neuromast positioned superior to the eye. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000443 supraorbital lateral lines supraorbital line zebrafish_anatomy ZFA:0000443 supraorbital lateral line ZFA:0000443 One of eight distinct lateral lines in the 4-day larva consisting of three neuromast positioned superior to the eye. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 supraorbital lateral lines supraorbital line ZFIN:ZDB-PUB-000523-3 TAO:0000444 hyopalatine suspensoria zebrafish_anatomy ZFA:0000444 suspensorium ZFA:0000444 Multi-tissue structure that is the dorsal part of the midbrain and develops from the alar plate and is the most complex layered structure in the zebrafish brain. ZFA:0001353 TAO:0000445 dorsal midbrain mesencephalic tectum tectal lobe tectum tectum opticum zebrafish_anatomy ZFA:0000445 optic tectum ZFA:0000445 Multi-tissue structure that is the dorsal part of the midbrain and develops from the alar plate and is the most complex layered structure in the zebrafish brain. GOC:mh ORCiD:0000-0001-9114-8737 tectum ZFIN:ZDB-PUB-961014-576 tectum opticum ZFIN:ZDB-PUB-961014-1280 TAO:0000446 zebrafish_anatomy ZFA:0000446 tecto-bulbar tract ZFA:0000446 Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus. TAO:0000447 zebrafish_anatomy tela choroidea ZFA:0000447 tela chorioidea ZFA:0000447 Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus. ISBN:0030223695 ISBN:0683014617 Diencephalic nucleus which is located ventral to the medial preglomerular nucleus in the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. TAO:0000448 zebrafish_anatomy ZFA:0000448 tertiary gustatory nucleus ZFA:0000448 Diencephalic nucleus which is located ventral to the medial preglomerular nucleus in the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes. TAO:0000449 longitudinal torus tori longitudinalis zebrafish_anatomy ZFA:0000449 torus longitudinalis ZFA:0000449 Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes. GOC:mh ORCiD:0000-0001-9114-8737 tori longitudinalis TAO:0000450 motor nucleus IV nIV zebrafish_anatomy ZFA:0000450 trochlear motor nucleus ZFA:0000450 Portion of tissue, located on the upper jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration. TAO:0000451 maxillary valve upper semilunar valve zebrafish_anatomy breathing valve buccal valve upper internal lip ZFA:0000451 upper oral valve ZFA:0000451 Portion of tissue, located on the upper jaw that defines the caudal extent of the labial cavity. The oral valves control the flow of water into the mouth during routine respiration. ZFIN:ZDB-PUB-060921-12 upper semilunar valve ZFIN:ZDB-PUB-060921-12 upper internal lip ZFIN:ZDB-PUB-060921-12 The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990). TAO:0000452 zebrafish_anatomy ZFA:0000452 urohyal ZFA:0000452 The urohyal is a median dermal bone that ossifies in the membrane between the paired sternohyoideus muscles ventral to the anterior end of copula 1. It is an unpaired ossification of the tendon of the sternohyoideos muscles in basal teleosts, and it is paired in catfishes (Arratia and Schultze, 1990). GOC:mh ORCiD:0000-0001-9114-8737 Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons. The root is typically found at either rhombomere 7 or rhombomere 8. TAO:0000453 CN-X vagal nerve vagus nerve zebrafish_anatomy ZFA:0000453 cranial nerve X ZFA:0000453 Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons. The root is typically found at either rhombomere 7 or rhombomere 8. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040109-20 ZFIN:ZDB-PUB-110727-5 Diencephalic nucleus that is part of the central pretectum and is ventromedial to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. The ventral accessory optic nucleus is very large in zebrafish as compared to other cyprinids. From Neuroanatomy of the Zebrafish Brain. TAO:0000454 zebrafish_anatomy ZFA:0000454 ventral accessory optic nucleus ZFA:0000454 Diencephalic nucleus that is part of the central pretectum and is ventromedial to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. The ventral accessory optic nucleus is very large in zebrafish as compared to other cyprinids. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Paired, deep caudal fin muscles that originate from the 30th vertebra then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays. TAO:0000455 flexor caudalis ventralis superioris zebrafish_anatomy CVS ventral flexor ZFA:0000455 superior caudal ventral flexor ZFA:0000455 Paired, deep caudal fin muscles that originate from the 30th vertebra then project from the vertebral column to the ventral base of the caudal fin where they attach broadly to ventral caudal fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Periventricular nucleus which lies rostral to the anterior commissure of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000456 area ventralis telencephali, nucleus ventralis ventral nucleus of V zebrafish_anatomy ventral division of ventral telencephalic area ZFA:0000456 ventral nucleus of ventral telencephalon ZFA:0000456 Periventricular nucleus which lies rostral to the anterior commissure of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. The ventral rectus is innervated by the oculomotor nerve. TAO:0000457 inferior rectus ventral recti zebrafish_anatomy ZFA:0000457 Mature form at Larval:Protruding-mouth. ventral rectus ZFA:0000457 Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. The ventral rectus is innervated by the oculomotor nerve. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111205-9 inferior rectus ZFIN:ZDB-PUB-110512-18 ventral recti TAO:0000458 prethalamus zebrafish_anatomy ZFA:0000458 ventral thalamus ZFA:0000458 prethalamus ZFIN:ZDB-PUB-060207-11 TAO:0000459 zebrafish_anatomy ZFA:0000459 ventromedial thalamic nucleus ZFA:0000459 zebrafish_anatomy ZFA:0000460 Part of axon so domain of GO celular component. Mauthner axon true ZFA:0000460 A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle. TAO:0000461 Weberian ossicles zebrafish_anatomy ZFA:0000461 Weberian ossicle ZFA:0000461 A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle. ZFIN:ZDB-PUB-011008-1 Weberian ossicles Hyoid muscle that originates at the first branchiostegal ray and inserts in the mesial aponeurosis, meeting its contralateral counterpart. The abductor hyohyoid is responsible for expansion of the branchiostegal membrane. TAO:0000462 abductors hyohyoid hyohyoideus abductor zebrafish_anatomy ZFA:0000462 abductor hyohyoid ZFA:0000462 Hyoid muscle that originates at the first branchiostegal ray and inserts in the mesial aponeurosis, meeting its contralateral counterpart. The abductor hyohyoid is responsible for expansion of the branchiostegal membrane. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-080306-33 abductors hyohyoid TAO:0000463 adductors zebrafish_anatomy ZFA:0000463 branchial adductor ZFA:0000463 adductors One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000464 otic lateral lines zebrafish_anatomy ZFA:0000464 otic lateral line ZFA:0000464 One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 otic lateral lines Is a dorsal, paired hyoid muscle that moves the auditory capsules with the opercles. TAO:0000465 adductor opercula adductor operculae zebrafish_anatomy ZFA:0000465 adductor operculi ZFA:0000465 Is a dorsal, paired hyoid muscle that moves the auditory capsules with the opercles. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 adductor operculae Series of muscles that have an anterior attachment at posteriorlateral base of each ray and posterior attachment at the haemal spines. These muscles act in opposition to the anal erectors to lower the anal fin rays. TAO:0000466 anal depressors zebrafish_anatomy depressores anales ZFA:0000466 anal depressor ZFA:0000466 Series of muscles that have an anterior attachment at posteriorlateral base of each ray and posterior attachment at the haemal spines. These muscles act in opposition to the anal erectors to lower the anal fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 anal depressors depressores anales ZFIN:ZDB-PUB-171118-8 Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired. TAO:0000467 articular zebrafish_anatomy ZFA:0000467 anguloarticular ZFA:0000467 Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-192 Is an otic epithelium that will mature into the anterior crista. TAO:0000468 anterior crista primordia zebrafish_anatomy ZFA:0000468 anterior crista primordium ZFA:0000468 Is an otic epithelium that will mature into the anterior crista. GOC:ymb ORCiD:0000-0002-9900-7880 anterior crista primordia Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the anterior semicircular canal. TAO:0000469 zebrafish_anatomy anterior semicircular canal primordia anterior semicircular canal primordium ZFA:0000469 otic vesicle anterior protrusion ZFA:0000469 Otic vesicle protrusion that is anteriorly located and gives rise to the pillar of the anterior semicircular canal. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-090330-11 anterior semicircular canal primordia Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, p. 34 in Atlas of Early Zebrafish Brain Development. TAO:0000470 area praeoptica area preoptica preoptic region zebrafish_anatomy ZFA:0000470 preoptic area ZFA:0000470 Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, p. 34 in Atlas of Early Zebrafish Brain Development. GOC:mh ISBN:0444517383 ORCiD:0000-0001-9114-8737 Cavitated compound organ that receives inflow of deoxygenated blood and delivers it to a muscular cardiac ventricle. Valves are present to direct flow. There are only two chambers present in the fish heart. TAO:0000471 zebrafish_anatomy ZFA:0000471 atrium ZFA:0000471 Cavitated compound organ that receives inflow of deoxygenated blood and delivers it to a muscular cardiac ventricle. Valves are present to direct flow. There are only two chambers present in the fish heart. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-020122-4 Large median unpaired cartilage bone that contacts the exoccipital, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials. TAO:0000472 zebrafish_anatomy ZFA:0000472 basioccipital ZFA:0000472 Large median unpaired cartilage bone that contacts the exoccipital, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials. GOC:mh ORCiD:0000-0001-9114-8737 Muscle system in the trunk. TAO:0000473 body musculature zebrafish_anatomy ZFA:0000473 trunk musculature ZFA:0000473 Muscle system in the trunk. GOC:cvs ORCiD:0000-0002-2244-7917 Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. TAO:0000474 opisthotic zebrafish_anatomy ZFA:0000474 intercalar ZFA:0000474 Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. GOC:mh ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is located anterior to the caudal tuberal nucleus and contains tyrosine hydroxylase immunoreactive CSF contacting bipolar cells. TAO:0000475 PVO zebrafish_anatomy ZFA:0000475 paraventricular organ ZFA:0000475 Diencephalic nucleus which is located anterior to the caudal tuberal nucleus and contains tyrosine hydroxylase immunoreactive CSF contacting bipolar cells. ZFIN:ZDB-PUB-001220-2 Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal. TAO:0000476 branchiostegal rays zebrafish_anatomy ZFA:0000476 branchiostegal ray ZFA:0000476 Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal. GOC:mh ORCiD:0000-0001-9114-8737 branchiostegal rays Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. TAO:0000477 PCV axial vein caudal cardinal veins postcardinal vein zebrafish_anatomy ZFA:0000477 posterior cardinal vein ZFA:0000477 Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. GOC:cvs ORCiD:0000-0002-2244-7917 true ZFA:0000478 Brainstem tract which carries cerebellar afferents from the dorsal tegmental nucleus and nucleus lateralis valvulae. Fuses with the rostral mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain. TAO:0000479 posterior mesencephalo-cerebellar tract zebrafish_anatomy ZFA:0000479 caudal mesencephalo-cerebellar tract ZFA:0000479 Brainstem tract which carries cerebellar afferents from the dorsal tegmental nucleus and nucleus lateralis valvulae. Fuses with the rostral mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain. TAO:0000480 nucleus octavolateralis caudalis zebrafish_anatomy ZFA:0000480 caudal octavolateralis nucleus ZFA:0000480 Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Preglomerular nucleus which is the most caudomedial of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. TAO:0000481 nucleus praeglomerulosus caudalis zebrafish_anatomy ZFA:0000481 caudal preglomerular nucleus ZFA:0000481 Preglomerular nucleus which is the most caudomedial of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is located posterior to the paraventricular organ. TAO:0000482 posterior tuberal nucleus zebrafish_anatomy ZFA:0000482 caudal tuberal nucleus ZFA:0000482 Diencephalic nucleus which is located posterior to the paraventricular organ. ZFIN:ZDB-PUB-001220-2 true ZFA:0000483 TAO:0000484 coeliac-mesenteric artery zebrafish_anatomy ZFA:0000484 celiacomesenteric artery ZFA:0000484 Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000485 central nucleus inferior lobes central nucleus of the inferior lobe nucleus centralis lobi inferioris hypothalami zebrafish_anatomy ZFA:0000485 central nucleus inferior lobe ZFA:0000485 Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 central nucleus inferior lobes Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal. TAO:0000486 post parietal zebrafish_anatomy ZFA:0000486 parietal bone ZFA:0000486 Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111111-5 Telencephalic nucleus which is centrally located and is surrounded by the other four dorsal telencephalic regions. From Neuroanatomy of the Zebrafish Brain. TAO:0000487 Dc area dorsalis telencephali, zona centralis central zone of D zebrafish_anatomy ZFA:0000487 central zone of dorsal telencephalon ZFA:0000487 Telencephalic nucleus which is centrally located and is surrounded by the other four dorsal telencephalic regions. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Dc ZFIN:ZDB-PUB-150226-6 Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials. TAO:0000488 ceratobranchial bones zebrafish_anatomy ZFA:0000488 ceratobranchial bone ZFA:0000488 Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials. GOC:mh ORCiD:0000-0001-9114-8737 ceratobranchial bones true ZFA:0000489 Cerebellar commissure which is located within the ventral boundary zone between valvula and corpus cerebelli. From Neuroanatomy of the Zebrafish Brain. TAO:0000490 cerebellar commissure zebrafish_anatomy ZFA:0000490 commissura cerebelli ZFA:0000490 Cerebellar commissure which is located within the ventral boundary zone between valvula and corpus cerebelli. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Commissure in the ventral diencephalon that lies rostral to the ventral flexure and caudal of the posterior tuberal nucleus. Axons from the supraoptic tract extend across the hypothalamus and enter this commissure. TAO:0000491 commissura tuberculi posterioris commissure of the posterior tuberculum zebrafish_anatomy CPT Ctub ZFA:0000491 commissure of the caudal tuberculum ZFA:0000491 Commissure in the ventral diencephalon that lies rostral to the ventral flexure and caudal of the posterior tuberal nucleus. Axons from the supraoptic tract extend across the hypothalamus and enter this commissure. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1268 CPT ZFIN:ZDB-PUB-961014-1268 Ctub ZFIN:ZDB-PUB-120424-30 TAO:0000492 zebrafish_anatomy ZFA:0000492 coracoradialis ZFA:0000492 TAO:0000493 zebrafish_anatomy ZFA:0000493 decussation of medial funicular nucleus ZFA:0000493 TAO:0000494 deep white zones zebrafish_anatomy ZFA:0000494 deep white zone ZFA:0000494 deep white zones Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone. TAO:0000495 dermosphenotic zebrafish_anatomy ZFA:0000495 infraorbital 5 ZFA:0000495 Plate like dermal bone with usually only one neuromast pore (Nelson, 1969). The last infraorbital bone in the series is referred to as the dermosphenotic (Nelson, 1969). In basal teleosts it is usually the sixth bone in the series but in zebrafish it is the fifth bone. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. CARO:0000024 TAO:0000496 organ zebrafish_anatomy ZFA:0000496 compound organ ZFA:0000496 Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. GOC:mh ORCiD:0000-0001-9114-8737 Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium, lies mostly parallel to the pelvic fin rays and attaches and inserts on the bases of all the pelvic fin rays. TAO:0000497 adductor profundus pelvicus pelvic adductors profundus zebrafish_anatomy ZFA:0000497 pelvic adductor profundus ZFA:0000497 Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium, lies mostly parallel to the pelvic fin rays and attaches and inserts on the bases of all the pelvic fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 adductor profundus pelvicus ZFIN:ZDB-PUB-171118-8 pelvic adductors profundus Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction. TAO:0000498 dilatator opercula zebrafish_anatomy dilator opercula dilators operculi ZFA:0000498 dilatator operculi ZFA:0000498 Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 ZFIN:ZDB-PUB-080306-33 dilators operculi The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke. TAO:0000499 arrector dorsalis dorsal arrectors zebrafish_anatomy ZFA:0000499 Acts as antagonist to the ventral arrector ZDB-PUB-050920. dorsal arrector ZFA:0000499 The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 arrector dorsalis ZFIN:ZDB-PUB-050920-7 dorsal arrectors Dorsal fin muscle that moves individual rays the dorsal fin to an erect position. Antagonistic to dorsal depressor muscle. There is one dorsal erector for each dorsal fin lepidotrichium. TAO:0000500 dorsal erectors erector dorsalis zebrafish_anatomy ZFA:0000500 dorsal erector ZFA:0000500 Dorsal fin muscle that moves individual rays the dorsal fin to an erect position. Antagonistic to dorsal depressor muscle. There is one dorsal erector for each dorsal fin lepidotrichium. GOC:cvs ORCiD:0000-0002-2244-7917 dorsal erectors TAO:0000501 funiculus dorsalis zebrafish_anatomy ZFA:0000501 dorsal funiculus ZFA:0000501 Trigeminal motor nucleus that is located dorsal to the lateral longitudinal fascicle. TAO:0000502 zebrafish_anatomy ZFA:0000502 dorsal motor nucleus trigeminal nerve ZFA:0000502 Trigeminal motor nucleus that is located dorsal to the lateral longitudinal fascicle. ISBN:3764351209 TAO:0000503 dorsal oblique branchial muscles zebrafish_anatomy ZFA:0000503 dorsal oblique branchial muscle ZFA:0000503 dorsal oblique branchial muscles TAO:0000504 dorsal retractors zebrafish_anatomy ZFA:0000504 dorsal retractor ZFA:0000504 dorsal retractors Brain structure which is the dorsal part of the telencephalon, most of which is developmentally everted such that the ependymal lining of the unpaired median ventricle becomes located at the apparent periphery of the telencephalon. From Neuroanatomy of the Zebrafish Brain. ZFA:0007007 TAO:0000505 area dorsalis telencephali dorsal telencephalic area pallium zebrafish_anatomy ZFA:0000505 dorsal telencephalon ZFA:0000505 Brain structure which is the dorsal part of the telencephalon, most of which is developmentally everted such that the ependymal lining of the unpaired median ventricle becomes located at the apparent periphery of the telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-110119-16 ZFIN:ZDB-PUB-120111-2 ZFIN:ZDB-PUB-961014-1280 Telencephalic nucleus which is the most dorsally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000506 Dd area dorsalis telencephali, zona dorsalis dorsal zone of D dorsal zone of dorsal telencephalic area zebrafish_anatomy ZFA:0000506 dorsal zone of dorsal telencephalon ZFA:0000506 Telencephalic nucleus which is the most dorsally located part of the dorsal telencephalon and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Dd ZFIN:ZDB-PUB-150226-6 Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally. TAO:0000507 epineurals zebrafish_anatomy ZFA:0000507 epineural ZFA:0000507 Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally. GOC:mh ORCiD:0000-0001-9114-8737 epineurals Internal skeletal supports of the pelvic fin. TAO:0000508 pelvic radials zebrafish_anatomy ZFA:0000508 pelvic radial ZFA:0000508 Internal skeletal supports of the pelvic fin. TAO:curator pelvic radials Brain structure which is part of the diencephalon and consists of the dorsal and ventral nuclei of the habenula, and two dorsal outgrowths, the epiphysis and the saccus dorsalis. From Neuroanatomy of the Zebrafish Brain. TAO:0000509 zebrafish_anatomy ZFA:0000509 epithalamus ZFA:0000509 Brain structure which is part of the diencephalon and consists of the dorsal and ventral nuclei of the habenula, and two dorsal outgrowths, the epiphysis and the saccus dorsalis. From Neuroanatomy of the Zebrafish Brain. ISBN:3764351209 TAO:0000510 external levators zebrafish_anatomy ZFA:0000510 external levatores ZFA:0000510 external levators Muscle system surrounding the eye. The extraocular musculature is derived from the neural crest. The extraocular muscles assume their adult configuration between 66 and 72 hpf. They differentiate contemporaneously with the eye vesicle, form precise anatomic attachments to sclera and bone, and are innervated by cranial nerves 3, 4, and 6. TAO:0000511 zebrafish_anatomy ocular musculature ZFA:0000511 extraocular musculature ZFA:0000511 Muscle system surrounding the eye. The extraocular musculature is derived from the neural crest. The extraocular muscles assume their adult configuration between 66 and 72 hpf. They differentiate contemporaneously with the eye vesicle, form precise anatomic attachments to sclera and bone, and are innervated by cranial nerves 3, 4, and 6. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110512-18 ZFIN:ZDB-PUB-970121-6 Hindbrain nucleus that doesn't project to the spinal cord. TAO:0000512 LVII lobus facialis zebrafish_anatomy tuberculum impar of Herrick ZFA:0000512 facial lobe ZFA:0000512 Hindbrain nucleus that doesn't project to the spinal cord. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-970218-12 LVII ZFIN:ZDB-PUB-961014-1280 Fast muscle cell located in somite 1. TAO:0000513 fast muscle cells somite 1 fast muscle fiber somite 1 zebrafish_anatomy ZFA:0000513 fast muscle cell somite 1 ZFA:0000513 Fast muscle cell located in somite 1. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 1 Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly. TAO:0000514 zebrafish_anatomy ZFA:0000514 frontal bone ZFA:0000514 Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0000515 Tissue located on the ventral side of the optic tectum, that contains the cell bodies of most tectal neurons. It is adjacent to the tectal ventricle and opposite the eminentia granularis of the cerebellum. It also contains a neurogenic niche and has hypothalamic inputs. The dendrites of neurons from the periventricular grey zones project their apical dendrites to the stratum opticum and stratum fibrosum et griseum superficale and synapse with retinal axons that project to these layers. ZFA:0001352 TAO:0000516 TAO:0001352 PGZ periventricular gray zone periventricular grey zones periventricular layer strata periventriculare stratum griseum periventricular stratum periventriculare zebrafish_anatomy SVP ZFA:0000516 periventricular grey zone ZFA:0000516 Tissue located on the ventral side of the optic tectum, that contains the cell bodies of most tectal neurons. It is adjacent to the tectal ventricle and opposite the eminentia granularis of the cerebellum. It also contains a neurogenic niche and has hypothalamic inputs. The dendrites of neurons from the periventricular grey zones project their apical dendrites to the stratum opticum and stratum fibrosum et griseum superficale and synapse with retinal axons that project to these layers. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140919-7 ZFIN:ZDB-PUB-180207-5 PGZ ZFIN:ZDB-PUB-140919-7 periventricular grey zones periventricular layer ZFIN:ZDB-PUB-180207-5 stratum griseum periventricular ZFIN:ZDB-PUB-180207-5 TAO:0000517 lobus glossopharyngei zebrafish_anatomy ZFA:0000517 glossopharyngeal lobe ZFA:0000517 Hindbrain nucleus which is longitudinally oriented and situated along the ventral fourth ventricle and extends rostrally up to the level of the tegmentum of the midbrain. From Neuroanatomy of the Zebrafish Brain. TAO:0000518 central gray central grey zebrafish_anatomy ZFA:0000518 griseum centrale ZFA:0000518 Hindbrain nucleus which is longitudinally oriented and situated along the ventral fourth ventricle and extends rostrally up to the level of the tegmentum of the midbrain. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone. TAO:0000519 haemal arch ventral arcocentrum zebrafish_anatomy ZFA:0000519 hemal arch ZFA:0000519 Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0000520 zebrafish_anatomy ZFA:0000520 horizontal commissure ZFA:0000520 Muscles that insert into skeletal elements of pharyngeal arch 2 (hyoid arch). Dorsal hyoid muscles are innervated by small, posterior branches of the facial nerve VII. Ventral hyoid muscles are innervated by the hyoides ramus of VII. TAO:0000521 hyoid muscles zebrafish_anatomy ZFA:0000521 hyoid muscle ZFA:0000521 Muscles that insert into skeletal elements of pharyngeal arch 2 (hyoid arch). Dorsal hyoid muscles are innervated by small, posterior branches of the facial nerve VII. Ventral hyoid muscles are innervated by the hyoides ramus of VII. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-970819-13 hyoid muscles Hyoid muscle that originates at the anterior ceratohyals and inserts into the mesial aponeurosis, meeting its contralateral counterpart. The inferior hyohyoid is responsible for adduction of the hyoid arch. TAO:0000522 inferior hyohyoids zebrafish_anatomy hyohyoideus inferior ZFA:0000522 inferior hyohyoid ZFA:0000522 Hyoid muscle that originates at the anterior ceratohyals and inserts into the mesial aponeurosis, meeting its contralateral counterpart. The inferior hyohyoid is responsible for adduction of the hyoid arch. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-080306-33 inferior hyohyoids TAO:0000523 zebrafish_anatomy ZFA:0000523 inferior reticular formation ZFA:0000523 One of eight distinct lateral lines in the 4-day larva consistingo of four neuromast that are positioned inferior or posterior to the eye A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000524 infraorbital line zebrafish_anatomy ZFA:0000524 infraorbital lateral line ZFA:0000524 One of eight distinct lateral lines in the 4-day larva consistingo of four neuromast that are positioned inferior or posterior to the eye A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anteriolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes. TAO:0000525 zebrafish_anatomy ZFA:0000525 intercalarium ZFA:0000525 Third Weberian ossicle. The intercalarium is a Y- or T-shaped modification of neural arch 2 in which an anteriolateral process (the manubrium) is embedded in the interossicular ligament; other parts include the ascending and articulating processes. ZFIN:ZDB-PUB-031103-13 Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only. TAO:0000526 intermuscular bones zebrafish_anatomy ZFA:0000526 intermuscular bone ZFA:0000526 Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only. GOC:cvs ORCiD:0000-0002-2244-7917 intermuscular bones The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials. TAO:0000527 infrapharyngobranchial pharyngobranchials zebrafish_anatomy ZFA:0000527 pharyngobranchial bone ZFA:0000527 The pharyngobranchials are the dorsalmost bones of the branchial arches located immediately dorsal and medial to the epibranchials. GOC:mh ORCiD:0000-0001-9114-8737 Muscle of the caudal fin that attaches to the appendicular skeleton and attaches to the first long ray on the dorsal side of the caudal fin. TAO:0000528 interradiali interradialis zebrafish_anatomy IC ZFA:0000528 interradialis caudalis ZFA:0000528 Muscle of the caudal fin that attaches to the appendicular skeleton and attaches to the first long ray on the dorsal side of the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 interradiali Cavitated compound organ located in the pleuroperitoneal cavity where hematopoiesis and filtering of blood occur. TAO:0000529 mesonephros zebrafish_anatomy ZFA:0000529 kidney ZFA:0000529 Cavitated compound organ located in the pleuroperitoneal cavity where hematopoiesis and filtering of blood occur. GOC:cvs ORCiD:0000-0002-2244-7917 Otolith part of utricle. ZFA:0001102 TAO:0000530 utricular otolith utriculith zebrafish_anatomy immature anterior otolith ZFA:0000530 lapillus ZFA:0000530 Otolith part of utricle. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020403-4 TAO:0000531 lateral columns zebrafish_anatomy ZFA:0000531 lateral column ZFA:0000531 lateral columns Lateral division of the valvula cerebelli. TAO:0000532 lateral division valvula cerebelli, pars lateralis zebrafish_anatomy ZFA:0000532 lateral valvula cerebelli ZFA:0000532 Lateral division of the valvula cerebelli. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0000533 lateral funiculi zebrafish_anatomy ZFA:0000533 lateral funiculus ZFA:0000533 lateral funiculi The lateral longitudinal fascicule is an ascending bundle of axons. The LLF contains fibers of the auditory and mechanosensory systems which originate in the primary sensory brainstem nuclei and terminate in the torus semicircularis. The LLF lies dorsal to the superior reticular formation, adjacent to the ventral rhombencephalic commissure. The LLF becomes displaced more laterally as it approaches the torus semicircularis. The LLF is homologous to the mammalian lateral lemniscus. ZFA:0000198 TAO:0000534 lateral lemniscus lateral longitudinal fascicle lateral longitundinal fasciculus zebrafish_anatomy LLF ZFA:0000534 lateral longitudinal fasciculus ZFA:0000534 The lateral longitudinal fascicule is an ascending bundle of axons. The LLF contains fibers of the auditory and mechanosensory systems which originate in the primary sensory brainstem nuclei and terminate in the torus semicircularis. The LLF lies dorsal to the superior reticular formation, adjacent to the ventral rhombencephalic commissure. The LLF becomes displaced more laterally as it approaches the torus semicircularis. The LLF is homologous to the mammalian lateral lemniscus. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-1280 lateral lemniscus ZFIN:ZDB-PUB-040526-7 TAO:0000535 lateral reticular nuclei zebrafish_anatomy ZFA:0000535 lateral reticular nucleus ZFA:0000535 lateral reticular nuclei Telencephalic nucleus which is laterally located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000536 Dl area dorsalis telencephali, zona lateralis lateral zone of D lateral zone of dorsal telencephalic area zebrafish_anatomy ZFA:0000536 lateral zone of dorsal telencephalon ZFA:0000536 Telencephalic nucleus which is laterally located and surrounds the central zone of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Dl ZFIN:ZDB-PUB-150226-6 Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responsible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw. TAO:0000537 levator operculae zebrafish_anatomy ZFA:0000537 levator operculi ZFA:0000537 Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responsible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-080306-33 Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs. TAO:0000538 dorsal rib pleural rib zebrafish_anatomy ZFA:0000538 rib ZFA:0000538 Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs. GOC:cvs ORCiD:0000-0002-2244-7917 The locus coeruleus is a widely projecting isthmal noradrenergic nucleus. It consists of between three and ten neurons, most of which have multiple, bilaterally projecting axons. TAO:0000539 loci coeruleus zebrafish_anatomy ZFA:0000539 Sometimes considered part of the reticular formation. locus coeruleus ZFA:0000539 The locus coeruleus is a widely projecting isthmal noradrenergic nucleus. It consists of between three and ten neurons, most of which have multiple, bilaterally projecting axons. ZFIN:ZDB-PUB-961014-717 loci coeruleus TAO:0000540 magnocellular octaval nuclei zebrafish_anatomy ZFA:0000540 magnocellular octaval nucleus ZFA:0000540 magnocellular octaval nuclei Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. TAO:0000541 marginal blastomeres zebrafish_anatomy ZFA:0000541 marginal blastomere ZFA:0000541 Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. ZFIN:ZDB-PUB-961014-576 marginal blastomeres TAO:0000542 medial column of the reticular formation medial columns zebrafish_anatomy ZFA:0000542 medial column ZFA:0000542 medial columns The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata. The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord. Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure. TAO:0000543 zebrafish_anatomy MLF ZFA:0000543 medial longitudinal fasciculus ZFA:0000543 The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata. The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord. Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-1280 ZFA:0001646 zebrafish_anatomy ZFA:0000544 medial pterygiophores anal fin true ZFA:0000544 Brain structure that is located ventrocaudal to the cerebellum and just anterior to the spinal cord and contains the sensory and motor nuclei of six cranial nerves. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata. TAO:0000545 zebrafish_anatomy ZFA:0000545 medulla oblongata ZFA:0000545 Brain structure that is located ventrocaudal to the cerebellum and just anterior to the spinal cord and contains the sensory and motor nuclei of six cranial nerves. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata. ISBN:3764351209 Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber. TAO:0000546 zebrafish_anatomy Wolffian duct renal duct ZFA:0000546 mesonephric duct ZFA:0000546 Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0000547 zebrafish_anatomy ZFA:0000547 mouth ZFA:0000547 Anatomical system consisting of the cardiac, skeletal and smooth muscles. TAO:0000548 zebrafish_anatomy ZFA:0000548 musculature system ZFA:0000548 Anatomical system consisting of the cardiac, skeletal and smooth muscles. GOC:cvs ORCiD:0000-0002-2244-7917 Paired fin bone that attaches the pectoral girdle to the skull via two projections contacting the epiotic and intercalar bones, and carry the main laterosensory canal. TAO:0000549 postemporal zebrafish_anatomy post-temporal ZFA:0000549 posttemporal ZFA:0000549 Paired fin bone that attaches the pectoral girdle to the skull via two projections contacting the epiotic and intercalar bones, and carry the main laterosensory canal. GOC:mh ORCiD:0000-0001-9114-8737 External openings to the nasal cavity. TAO:0000550 nares nostril zebrafish_anatomy ZFA:0000550 naris ZFA:0000550 External openings to the nasal cavity. GOC:mh ORCiD:0000-0001-9114-8737 http://medical-dictionary.thefreedictionary.com/nares nares Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem. TAO:0000551 zebrafish_anatomy ZFA:0000551 nucleus lateralis valvulae ZFA:0000551 Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-100601-20 ZFIN:ZDB-PUB-961014-1280 Nucleus located in the midbrain tegmentum that controls motor coordination during locomotion. TAO:0000552 red nucleus zebrafish_anatomy ZFA:0000552 nucleus ruber ZFA:0000552 Nucleus located in the midbrain tegmentum that controls motor coordination during locomotion. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-151021-15 TAO:0000553 motor nucleus III nIII zebrafish_anatomy ZFA:0000553 oculomotor nucleus ZFA:0000553 Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located. The olfactory epithelium bowl-shaped structures surrounding the lumen of the olfactory pit. TAO:0000554 nasal epithelium nasal sensory epithelium zebrafish_anatomy ZFA:0000554 olfactory epithelium ZFA:0000554 Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located. The olfactory epithelium bowl-shaped structures surrounding the lumen of the olfactory pit. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 A large flap, covered by integument, supported by several flat bones, actuated by muscles, found on the side of the head covering the gill chambers. TAO:0000555 gill cover opercular apparatus operculum zebrafish_anatomy gill slit opercular cover ZFA:0000555 opercular flap ZFA:0000555 A large flap, covered by integument, supported by several flat bones, actuated by muscles, found on the side of the head covering the gill chambers. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110609-47 opercular cover ZFIN:ZDB-PUB-030304-18 Decussation of cranial nerve II axons whereby the retinal axons cross the midline, projecting contralaterally through the optic tract. TAO:0000556 chiasma opticum optic commissure zebrafish_anatomy ZFA:0000556 optic chiasm ZFA:0000556 Decussation of cranial nerve II axons whereby the retinal axons cross the midline, projecting contralaterally through the optic tract. GOC:ymb ORCiD:0000-0002-9900-7880 chiasma opticum ZFIN:ZDB-PUB-961014-1280 Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra. TAO:0000557 penultimate vertebra preural centrum 1 pu1 second last vertebra zebrafish_anatomy ZFA:0000557 preural 1 vertebra ZFA:0000557 Vertebra anterior to the urostyle; sometimes termed the 'penultimate' vertebra. ZFIN:ZDB-PUB-011008-1 Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) TAO:0000558 pm posterior sensory patch posteromedial macula zebrafish_anatomy ZFA:0000558 posterior macula ZFA:0000558 Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 Cavitated compound organ that is a fluid filed chamber with a maculae on one surface and associated otolith tethered to the maculae. TAO:0000559 otolith organs zebrafish_anatomy ZFA:0000559 otolith organ ZFA:0000559 Cavitated compound organ that is a fluid filed chamber with a maculae on one surface and associated otolith tethered to the maculae. GOC:ymb ORCiD:0000-0002-9900-7880 otolith organs Duct that connects ovary with cloacal chamber. In zebrafish the oviduct is a continuation of the ovary. TAO:0000560 oviducts zebrafish_anatomy ZFA:0000560 oviduct ZFA:0000560 Duct that connects ovary with cloacal chamber. In zebrafish the oviduct is a continuation of the ovary. GOC:cvs GOC:mh ISBN:0199638098 ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 oviducts Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic. TAO:0000561 zebrafish_anatomy ZFA:0000561 parasphenoid ZFA:0000561 Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0000562 Musculature that is part of the pectoral fin. TAO:0000563 zebrafish_anatomy pectoral fin muscle ZFA:0000563 pectoral fin musculature ZFA:0000563 Musculature that is part of the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 Deep pelvic muscle that originates from the basipterygium and lies mainly parallel to the rays and attaches to the base of all the rays except ray 1. TAO:0000564 abductor profundus pelvicus pelvic abductors profundus zebrafish_anatomy ZFA:0000564 pelvic abductor profundus ZFA:0000564 Deep pelvic muscle that originates from the basipterygium and lies mainly parallel to the rays and attaches to the base of all the rays except ray 1. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 abductor profundus pelvicus ZFIN:ZDB-PUB-171118-8 pelvic abductors profundus Anatomical cluster that consists of the paired basipterygia which support the pelvic fin. TAO:0000565 pelvic girdles zebrafish_anatomy ZFA:0000565 pelvic girdle ZFA:0000565 Anatomical cluster that consists of the paired basipterygia which support the pelvic fin. TAO:WD pelvic girdles Patch of thickened, pseudostratified epithelium that is associated with the posterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The posterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) ZFA:0000478 TAO:0000566 caudal crista pc posterior crista ampullaris posterior cristae posterior semicircular canal sensory patch posterior semicircular canal sensory patches zebrafish_anatomy ZFA:0000566 posterior crista ZFA:0000566 Patch of thickened, pseudostratified epithelium that is associated with the posterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The posterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 posterior cristae posterior semicircular canal sensory patches The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish. TAO:0000567 premaxillae zebrafish_anatomy ZFA:0000567 premaxilla ZFA:0000567 The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish. GOC:ymb ORCiD:0000-0002-9900-7880 premaxillae Presumptive structure fated to become blood. Determined by marker expression. TAO:0000568 zebrafish_anatomy ZFA:0000568 presumptive blood ZFA:0000568 Presumptive structure fated to become blood. Determined by marker expression. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Embryonic structure that gives rise to the hindbrain. TAO:0000569 presumptive rhombencephalon zebrafish_anatomy ZFA:0000569 presumptive hindbrain ZFA:0000569 Embryonic structure that gives rise to the hindbrain. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue that is part of the anterior neural keel and will form the optic vesicle. ZFA:0000021 TAO:0000570 eye field zebrafish_anatomy ZFA:0000570 optic primordium ZFA:0000570 Portion of tissue that is part of the anterior neural keel and will form the optic vesicle. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure that gives rise to the telencephalon. TAO:0000571 zebrafish_anatomy ZFA:0000571 presumptive telencephalon ZFA:0000571 Embryonic structure that gives rise to the telencephalon. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0000572 Portion of tissue which is the innermost layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain. TAO:0000573 stratum cellulare internum bulbi olfactorii zebrafish_anatomy ZFA:0000573 internal cellular layer ZFA:0000573 Portion of tissue which is the innermost layer of the olfactory bulb. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Embryonic structure that gives rise to the diencephalon. TAO:0000574 zebrafish_anatomy ZFA:0000574 presumptive diencephalon ZFA:0000574 Embryonic structure that gives rise to the diencephalon. GOC:mh ORCiD:0000-0001-9114-8737 Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. The prootic bear foramina that accommodate branches of the trigeminal and facial nerves. TAO:0000575 prootics zebrafish_anatomy ZFA:0000575 prootic ZFA:0000575 Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. The prootic bear foramina that accommodate branches of the trigeminal and facial nerves. GOC:mh ORCiD:0000-0001-9114-8737 prootics Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. TAO:0000576 autopterotic zebrafish_anatomy ZFA:0000576 pterotic ZFA:0000576 Paired cartilage bone that contacts the autosphenotic anteriorly, the parietal dorsally, the prootic ventrally, and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. GOC:mh ORCiD:0000-0001-9114-8737 Afferent vein that supplies the kidney. TAO:0000577 renal portal veins zebrafish_anatomy ZFA:0000577 renal portal vein ZFA:0000577 Afferent vein that supplies the kidney. GOC:cvs ISBN:9781118222942 ORCiD:0000-0002-2244-7917 renal portal veins Endochondral bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly. The ceratohyal bone begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal. TAO:0000578 anterior ceratohyal ceratohyal anterior rostral ceratohyal zebrafish_anatomy ZFA:0000578 ceratohyal bone ZFA:0000578 Endochondral bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly. The ceratohyal bone begins as a ossification in the anterior portion of the ceratohyal cartilage (4.6 mm NL). The posterior end broadens and meets the epihyal in a pad of cartilage. The anterior end broadens and terminates in two heads (8.8 mm). The anterodorsal head forms a synchondrosis with the dorsal hypohyal and the anteroventral head forms a synchondrosis with the ventral hypohyal. All of the branchiostegal rays articulate with the ventral edge of the ceratohyal. GOC:mh ORCiD:0000-0001-9114-8737 Brainstem tract which carries cerebellar afferents from the pretectum and runs medial to the lateral longitudinal fascicle for a distance before turning dorsally to traverse the nucleus lateralis valvulae. Fuses with the caudal mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain. TAO:0000579 anterior mesencephalo-cerebellar tract zebrafish_anatomy ZFA:0000579 rostral mesencephalo-cerebellar tract ZFA:0000579 Brainstem tract which carries cerebellar afferents from the pretectum and runs medial to the lateral longitudinal fascicle for a distance before turning dorsally to traverse the nucleus lateralis valvulae. Fuses with the caudal mesencephalo-cerebellar tract upon entering the cerebellum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Preglomerular nucleus which is the most rostrolaterally located of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. TAO:0000580 anterior preglomerular nucleus nucleus praeglomerulosus anterior zebrafish_anatomy ZFA:0000580 rostral preglomerular nucleus ZFA:0000580 Preglomerular nucleus which is the most rostrolaterally located of the preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is the most anterior and lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain. TAO:0000581 anterior tuberal nucleus nucleus tuberis anterior zebrafish_anatomy ZFA:0000581 rostral tuberal nucleus ZFA:0000581 Diencephalic nucleus which is the most anterior and lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000582 zebrafish_anatomy ZFA:0000582 saccus dorsalis ZFA:0000582 Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen. TAO:0000583 scapulae zebrafish_anatomy ZFA:0000583 scapula ZFA:0000583 Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen. TAO:GA_TG scapulae true ZFA:0000584 Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid. TAO:0000585 zebrafish_anatomy ZFA:0000585 kinethmoid cartilage ZFA:0000585 Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid. GOC:mh ORCiD:0000-0001-9114-8737 Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. TAO:0000586 antepenultimate vertebra preural centrum 2 pu2 third last vertebra zebrafish_anatomy ZFA:0000586 preural 2 vertebra ZFA:0000586 Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. ZFIN:ZDB-PUB-011008-1 Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anteriolateral process that borders the posterodorsal margin of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet. TAO:0000587 autosphenotic zebrafish_anatomy ZFA:0000587 sphenotic ZFA:0000587 Paired cartilage bone that contacts the pterosphenoid anteriorly, the prootic ventrally, and the pterotic posteriorly. Roofed by the frontal bone anteriorly and the parietal bone posteriorly, the sphenotic bears a large anteriolateral process that borders the posterodorsal margin of the orbit. The lower edge of the sphenotic contributes to the hyomandibular facet. GOC:mh ORCiD:0000-0001-9114-8737 The sensory ganglion of the ear. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/stato/stato.html'>statoacoustic ganglion</a> by T. Whitfield.) TAO:0000588 auditory ganglion gVIII octaval ganglion sag statoacoustic ganglia zebrafish_anatomy ZFA:0000588 statoacoustic (VIII) ganglion ZFA:0000588 The sensory ganglion of the ear. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/stato/stato.html'>statoacoustic ganglion</a> by T. Whitfield.) GOC:mh ORCiD:0000-0001-9114-8737 statoacoustic ganglia Anatomical groove which separates the dorsal and medial zones of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000589 zebrafish_anatomy ZFA:0000589 sulcus ypsiloniformis ZFA:0000589 Anatomical groove which separates the dorsal and medial zones of dorsal telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:cvs GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 Region of the head where the mouth and oral structures are located. TAO:0000590 zebrafish_anatomy ZFA:0000590 oral region ZFA:0000590 Region of the head where the mouth and oral structures are located. GOC:ymb ORCid:0000-0002-9900-7880 Portion of presumptive mesoderm fated to become paraxial mesoderm. Determined by fate mapping. TAO:0000591 zebrafish_anatomy ZFA:0000591 presumptive paraxial mesoderm ZFA:0000591 Portion of presumptive mesoderm fated to become paraxial mesoderm. Determined by fate mapping. GOC:mh ORCiD:0000-0001-9114-8737 Superficial, dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto all pelvic fin rays except ray 1. TAO:0000592 adductor superficialis pelvicus superficial pelvic adductors zebrafish_anatomy ZFA:0000592 superficial pelvic adductor ZFA:0000592 Superficial, dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto all pelvic fin rays except ray 1. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 adductor superficialis pelvicus ZFIN:ZDB-PUB-171118-8 superficial pelvic adductors TAO:0000593 zebrafish_anatomy ZFA:0000593 There may be a cholinergic nucleus called the superior reticular nucleus rostral to the locus coeruleus, ZDB-PUB-040526-6. superior reticular formation medial column ZFA:0000593 Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal. TAO:0000594 supracleithra zebrafish_anatomy ZFA:0000594 supracleithrum ZFA:0000594 Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal. TAO:GA_TG TAO:WD supracleithra Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exoccipital and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally. TAO:0000595 zebrafish_anatomy ZFA:0000595 supraoccipital ZFA:0000595 Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exoccipital and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally. GOC:mh ORCiD:0000-0001-9114-8737 ZFA:0001410 zebrafish_anatomy ZFA:0000596 supraorbital series true ZFA:0000596 CNS white matter that is part of the telencephalon. TAO:0000597 telencephalic tract/commissure zebrafish_anatomy ZFA:0000597 telencephalic white matter ZFA:0000597 CNS white matter that is part of the telencephalon. GOC:mh ORCiD:0000-0001-9114-8737 Male reproductive organ. Adult zebrafish testes are paired organs forming elongated structures, internally organized into tubules. These tubules are formed by seminiferous epithelium containing cysts of spermatogonia and spermatocytes surrounded by somatic support cells, called Sertoli cells. Cysts are arranged around a lumen containing spermatozoa that is connected to the efferent ducts. The interstitial regions between the tubules contain the steroid-producing Leydig cells, connective tissue, and blood vessels. TAO:0000598 testes zebrafish_anatomy ZFA:0000598 testis ZFA:0000598 Male reproductive organ. Adult zebrafish testes are paired organs forming elongated structures, internally organized into tubules. These tubules are formed by seminiferous epithelium containing cysts of spermatogonia and spermatocytes surrounded by somatic support cells, called Sertoli cells. Cysts are arranged around a lumen containing spermatozoa that is connected to the efferent ducts. The interstitial regions between the tubules contain the steroid-producing Leydig cells, connective tissue, and blood vessels. GOC:cvs GOC:mh ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-161215-23 testes Multi-tissue structure that is part of the midbrain and develops from the alar plate. The torus semicircularis is located dorsal to the lateral tegmentum where it extends into the medial tectal ventricle and receives ascending sensory octavolateralis input. TAO:0000599 semicircular torus zebrafish_anatomy ZFA:0000599 torus semicircularis ZFA:0000599 Multi-tissue structure that is part of the midbrain and develops from the alar plate. The torus semicircularis is located dorsal to the lateral tegmentum where it extends into the medial tectal ventricle and receives ascending sensory octavolateralis input. GOC:mh ORCiD:0000-0001-9114-8737 Cranial nerve that innervates the oculomotor system. The trochlear nerve is the only motor nerve to project dorsally and then cross the midline before exiting the neuroepithelium and re-orienting ventrally to project to the contralateral superior oblique extraocular muscle. TAO:0000600 CN-IV trochlear trochlear nerve zebrafish_anatomy ZFA:0000600 cranial nerve IV ZFA:0000600 Cranial nerve that innervates the oculomotor system. The trochlear nerve is the only motor nerve to project dorsally and then cross the midline before exiting the neuroepithelium and re-orienting ventrally to project to the contralateral superior oblique extraocular muscle. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-131119-12 Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain. TAO:0000601 periventricular pretectum pretectal periventricular nuclei zebrafish_anatomy ZFA:0000601 pretectal periventricular nucleus ZFA:0000601 Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 pretectal periventricular nuclei Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone. TAO:0000602 uroneurals zebrafish_anatomy ZFA:0000602 uroneural ZFA:0000602 Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone. ISSN:0362-2525 TAO:WD http://citebank.org/node/36904 uroneurals Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain. TAO:0000603 valvula cerebellum zebrafish_anatomy valvula ZFA:0000603 valvula cerebelli ZFA:0000603 Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 valvula cerebellum Outflow artery from the heart to the aortic arches. TAO:0000604 zebrafish_anatomy ZFA:0000604 ventral aorta ZFA:0000604 Outflow artery from the heart to the aortic arches. ZFIN:ZDB-PUB-961014-576 TAO:0000605 ventral funiculi zebrafish_anatomy ZFA:0000605 ventral funiculus ZFA:0000605 ventral funiculi TAO:0000606 ventral oblique branchial muscles zebrafish_anatomy ZFA:0000606 ventral oblique branchial muscle ZFA:0000606 ventral oblique branchial muscles Brainstem commissure that intersects the medial longitudinal fasciculus. TAO:0000607 zebrafish_anatomy ZFA:0000607 ventral rhombencephalic commissure ZFA:0000607 Brainstem commissure that intersects the medial longitudinal fasciculus. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Ventral branchial muscle that runs diagonally from near the horizontal midline at the caudal end caudal to the ventral side at the rostral end. The ventral transverse muscles are paired and there is a pair in each branchial arch. TAO:0000608 transverse ventralis transversus ventralis zebrafish_anatomy ZFA:0000608 ventral transverse ZFA:0000608 Ventral branchial muscle that runs diagonally from near the horizontal midline at the caudal end caudal to the ventral side at the rostral end. The ventral transverse muscles are paired and there is a pair in each branchial arch. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-970819-13 Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to mechanoreception. From Neuroanatomy of the Zebrafish Brain. TAO:0000609 zebrafish_anatomy ZFA:0000609 ventrolateral nucleus ZFA:0000609 Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to mechanoreception. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Connective tissue partitions developing between the myotomes. TAO:0000610 transverse myoseptum zebrafish_anatomy ZFA:0000610 vertical myoseptum ZFA:0000610 Connective tissue partitions developing between the myotomes. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 Collection of the visceromotor nuclei and their fiber tracts in the medulla oblongata. TAO:0000611 zebrafish_anatomy ZFA:0000611 visceromotor column ZFA:0000611 Collection of the visceromotor nuclei and their fiber tracts in the medulla oblongata. ISBN:3540560130 Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII. Formed by the intermandibularis posterior and ventral interhyoideus. TAO:0000612 protractor hyoideus protractors hyoidei zebrafish_anatomy ZFA:0000612 Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317. In the zebrafish, as in most other teleosts, the interhyoideus becomes associated with the intermandibularis posterior, forming the protractor hyoideus. ZDB-PUB-080306-33. protractor hyoidei ZFA:0000612 Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII. Formed by the intermandibularis posterior and ventral interhyoideus. TAO:WD ZFIN:ZDB-PUB-080306-33 protractor hyoideus protractors hyoidei true ZFA:0000613 Abductor muscle that develops from the primitive pectoral fin abductor. It originates along the anterior skeletal flange of the pectoral girdle. The abductor profundus bundles insert onto the fin ray base proximal processes of all fin rays. TAO:0000614 abductors profundus zebrafish_anatomy ZFA:0000614 abductor profundus ZFA:0000614 Abductor muscle that develops from the primitive pectoral fin abductor. It originates along the anterior skeletal flange of the pectoral girdle. The abductor profundus bundles insert onto the fin ray base proximal processes of all fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 abductors profundus Hyoid muscle that originates at the parasphenoid and inserts into the mesial sides of the hyomandibula, metapterygoid and entopterygoid. The Adductor arcus palatini is responsible for suspensorial adduction. TAO:0000615 adductors arcus palatini zebrafish_anatomy ZFA:0000615 adductor arcus palatini ZFA:0000615 Hyoid muscle that originates at the parasphenoid and inserts into the mesial sides of the hyomandibula, metapterygoid and entopterygoid. The Adductor arcus palatini is responsible for suspensorial adduction. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-080306-33 adductors arcus palatini Small thin adductor muscle that is part of the pectoral fin. The origin of the adductor profundus lies along the developing anterior skeletal flange of the pectoral girdle. The adductor profundus develops from the primitive pectoral fin adductor. TAO:0000616 adductors profundus zebrafish_anatomy ZFA:0000616 adductor profundus ZFA:0000616 Small thin adductor muscle that is part of the pectoral fin. The origin of the adductor profundus lies along the developing anterior skeletal flange of the pectoral girdle. The adductor profundus develops from the primitive pectoral fin adductor. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 adductors profundus Series of muscles that have a distal attachment at the anteriolateral base of each ray and spike and a proximal attachment to the haemal spines. A tendon runs along one third the dorsoventral length of the muscle toward the attachment at the haemal spine. These muscles act in opposition to the anal depressors to raise the anal fin rays. TAO:0000617 anal erectors erectores anales zebrafish_anatomy ZFA:0000617 anal erector ZFA:0000617 Series of muscles that have a distal attachment at the anteriolateral base of each ray and spike and a proximal attachment to the haemal spines. A tendon runs along one third the dorsoventral length of the muscle toward the attachment at the haemal spine. These muscles act in opposition to the anal depressors to raise the anal fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 anal erectors erectores anales ZFIN:ZDB-PUB-171118-8 Brainstem commissure located immediately rostral to the interpeduncular nucleus. Many fibers in the tecto-bulbar tract cross the midline through the ansulate commissure. Referred to as the ventral tegmental commissure at embryonic stages, and is the only commissure to change names during development. From Neuroanatomy of the Zebrafish Brain. TAO:0000618 Cans commissura ansulata ventral tegmental commissure zebrafish_anatomy ZFA:0000618 ansulate commissure ZFA:0000618 Brainstem commissure located immediately rostral to the interpeduncular nucleus. Many fibers in the tecto-bulbar tract cross the midline through the ansulate commissure. Referred to as the ventral tegmental commissure at embryonic stages, and is the only commissure to change names during development. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Patch of thickened, pseudostratified epithelium that is associated with the anterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The anterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) ZFA:0000273 TAO:0000619 ac anterior crista ampullaris anterior cristae anterior semicircular canal sensory patch anterior semicircular canal sensory patches rostral crista zebrafish_anatomy ZFA:0000619 anterior crista ZFA:0000619 Patch of thickened, pseudostratified epithelium that is associated with the anterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The anterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/sens/sens.html'>sensory patches of the ear</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 anterior cristae anterior semicircular canal sensory patches The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms). TAO:0000620 palatine zebrafish_anatomy ZFA:0000620 autopalatine ZFA:0000620 The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms). GOC:ymb ORCiD:0000-0002-9900-7880 The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei. TAO:0000621 quadrates zebrafish_anatomy ZFA:0000621 quadrate ZFA:0000621 The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei. GOC:ymb ORCiD:0000-0002-9900-7880 quadrates Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves. TAO:0000622 barble zebrafish_anatomy ZFA:0000622 barbel ZFA:0000622 Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves. GOC:ymb ORCiD:0000-0002-9900-7880 Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962). TAO:0000623 pelvic bone zebrafish_anatomy pelvic girdle ZFA:0000623 basipterygium ZFA:0000623 Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962). TAO:curator TAO:0000624 zebrafish_anatomy ZFA:0000624 Term is being obsoleted because it cannot be anatomically identified in zebrafish. From Neuroanatomy of the Zebrafish Brain ISBN:3764351209. brachium conjunctivum true ZFA:0000624 true ZFA:0000625 Brainstem and spinal tract which emerges medial to the caudal intermediate reticular formation and runs caudally along the medial edge of the inferior reticular formation. It is displaced laterally and associates with other tracts in the dorsal part of the funiculus lateralis immediately prior to reaching the spinal cord. The bulbo-spinal tract carries descending spinal projections. From Neuroanatomy of the Zebrafish Brain. TAO:0000626 tractus bulbospinalis zebrafish_anatomy ZFA:0000626 bulbo-spinal tract ZFA:0000626 Brainstem and spinal tract which emerges medial to the caudal intermediate reticular formation and runs caudally along the medial edge of the inferior reticular formation. It is displaced laterally and associates with other tracts in the dorsal part of the funiculus lateralis immediately prior to reaching the spinal cord. The bulbo-spinal tract carries descending spinal projections. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Endochondral bone that begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage. TAO:0000627 caudal ceratohyal posterior ceratohyal zebrafish_anatomy ZFA:0000627 epihyal ZFA:0000627 Endochondral bone that begins ossifying on the anterior surface of the posterior end of the ceratohyal cartilage near the site of articulation with the interhyal (5.8 mm). It joins the ceratohyal in a pad of persisting cartilage. GOC:mh ORCiD:0000-0001-9114-8737 Fin musculature that is part of the caudal fin. The musculature is composed of 12 muscles that are arranged in a superficial and a deep muscle layer. Nerve roots of spinal segments 27-31 supply the caudal fin muscles. TAO:0000628 zebrafish_anatomy ZFA:0000628 caudal fin musculature ZFA:0000628 Fin musculature that is part of the caudal fin. The musculature is composed of 12 muscles that are arranged in a superficial and a deep muscle layer. Nerve roots of spinal segments 27-31 supply the caudal fin muscles. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-011008-1 Abducens motor nucleus which is located at the level of the intermediate reticular formation. TAO:0000629 nVIc nucleus nervi abducentis, pars caudalis zebrafish_anatomy ZFA:0000629 caudal motor nucleus ZFA:0000629 Abducens motor nucleus which is located at the level of the intermediate reticular formation. GOC:mh ORCiD:0000-0001-9114-8737 Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000630 caudal parvocellular preoptic nuclei posterior parvocellular preoptic nucleus zebrafish_anatomy ZFA:0000630 caudal parvocellular preoptic nucleus ZFA:0000630 Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain. ISBN:3764351209 caudal parvocellular preoptic nuclei Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000631 caudal pretectal nuclei posterior pretectal nucleus zebrafish_anatomy ZFA:0000631 caudal pretectal nucleus ZFA:0000631 Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 caudal pretectal nuclei Anatomical system that has as its parts the organs concerned with reproduction. TAO:0000632 zebrafish_anatomy ZFA:0000632 reproductive system ZFA:0000632 Anatomical system that has as its parts the organs concerned with reproduction. UBERON:curator Brain structure which is part of the diencephalon and is larger than the dorsal thalamus and ventral thalamus. From Neuroanatomy of the Zebrafish Brain. TAO:0000633 posterior tubercle posterior tuberculum zebrafish_anatomy ZFA:0000633 caudal tuberculum ZFA:0000633 Brain structure which is part of the diencephalon and is larger than the dorsal thalamus and ventral thalamus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Multi-tissue structure which forms most of the median tuberal portion of the hypothalamus. From Neuroanatomy of the Zebrafish Brain. hypothalamus pars tuberalis tuberal hypothalamus zebrafish_anatomy ZFA:0000634 caudal hypothalamic zone ZFA:0000634 Multi-tissue structure which forms most of the median tuberal portion of the hypothalamus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 hypothalamus pars tuberalis ZFIN:ZDB-PUB-961014-1280 tuberal hypothalamus ZFIN:ZDB-PUB-961014-1280 Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000635 nucleus praetectalis centralis zebrafish_anatomy ZFA:0000635 central pretectal nucleus ZFA:0000635 Diencephalic nucleus that is part of the central pretectum and is dorsal to the magnocellular superficial pretectal nucleus and the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Portion of tissue composed of parallel fibers that originate at the granular eminence that overlays the rhombencephalic lateral line region. Also termed the molecular layer. TAO:0000636 crista cerebellaris molecular layer zebrafish_anatomy ZFA:0000636 Not sure how much of the molecular layer is cerebellar crest. cerebellar crest ZFA:0000636 Portion of tissue composed of parallel fibers that originate at the granular eminence that overlays the rhombencephalic lateral line region. Also termed the molecular layer. GOC:ymb ISBN:3540560130 ORCiD:0000-0002-9900-7880 crista cerebellaris molecular layer ZFIN:ZDB-PUB-961014-1280 Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum is bilaterally paired. TAO:0000637 zebrafish_anatomy ZFA:0000637 claustrum cartilage ZFA:0000637 Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum is bilaterally paired. GOC:mh ORCiD:0000-0001-9114-8737 Anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. From Neuroanatomy of the Zebrafish Brain. TAO:0000638 commissura anterior, pars dorsalis zebrafish_anatomy ZFA:0000638 commissura rostral, pars dorsalis ZFA:0000638 Anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. From Neuroanatomy of the Zebrafish Brain. ISBN:3764351209 Cerebellar commissure that runs between the bulbo-spinal tract and the vestibulo-spinal tract. TAO:0000639 commissura nucleorum gustatoriorum secundariorum zebrafish_anatomy commissure of the secondary gustatory nuclei ZFA:0000639 commissure of the secondary gustatory nucleus ZFA:0000639 Cerebellar commissure that runs between the bulbo-spinal tract and the vestibulo-spinal tract. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Multi-tissue structure that forms the transparent front part of the eye, covering the iris, pupil and anterior chamber. TAO:0000640 corneas zebrafish_anatomy ZFA:0000640 cornea ZFA:0000640 Multi-tissue structure that forms the transparent front part of the eye, covering the iris, pupil and anterior chamber. GOC:mh ORCiD:0000-0001-9114-8737 http://www.encyclopedia.thefreedictionary.com/cornea corneas Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves. TAO:0000641 cranial nerves zebrafish_anatomy ZFA:0000641 cranial nerve ZFA:0000641 Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves. GOC:mh ORCiD:0000-0001-9114-8737 cranial nerves TAO:0000642 zebrafish_anatomy ZFA:0000642 decussation of the medial octavolateralis nucleus ZFA:0000642 CNS white matter comprised of the rostral mesencephalo-cerebellar and caudal mesencephalo-cerebellar tracts. From Neuroanatomy of the Zebrafish Brain. TAO:0000643 anterior cerebellar tract tractus cerebellaris anterior zebrafish_anatomy ZFA:0000643 rostral cerebellar tract ZFA:0000643 CNS white matter comprised of the rostral mesencephalo-cerebellar and caudal mesencephalo-cerebellar tracts. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000644 dental plates zebrafish_anatomy ZFA:0000644 "Dermal tooth plates are variable structures. During upper pharyngeal arch development in Astatotilapia elegans, dermal tooth plates are formed entirely of fused tooth pedicels (Huys-seune, 1983). However, in lower pharyngeals of the same species, teeth attach to a preexisting plate (Vandewalle et al., 1994). In other teleosts (e.g., cyprinid fifth ceratobranchials), there is no tooth plate per se, because tooth pedicels do not fuse to one another, but each fuses to the endochondral bone separately (see Gosline, 1985)." Consider ZFA:0001239 ceratobranchial 5 bone or ZFA:0000694 ceratobranchial 5 tooth dental plate true ZFA:0000644 dental plates TAO:0000645 nucleus octavus descendens zebrafish_anatomy ZFA:0000645 descending octaval nucleus ZFA:0000645 Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally. TAO:0000646 anal fin distal radials zebrafish_anatomy ZFA:0000646 anal fin distal radial ZFA:0000646 Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally. GOC:cvs ORCiD:0000-0002-2244-7917 anal fin distal radials Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, dorsal to the central caudal thalamic nucleus. TAO:0000647 dorsal posterior thalamic nucleus nucleus dorsalis posterior thalami zebrafish_anatomy ZFA:0000647 dorsal caudal thalamic nucleus ZFA:0000647 Diencephalic nucleus which is located in the caudal portion of the dorsal thalamus, dorsal to the central caudal thalamic nucleus. GOC:mh ORCiD:0000-0001-9114-8737 Musculature that is part of the dorsal fin. The dorsal fin musculature is composed of one unit per fin ray that are arranged in series on each side of the body. Each unit is composed of one fin ray, three supporting pterygophores, and a set of paired depressor, erector, and inclinator muscles. TAO:0000648 zebrafish_anatomy ZFA:0000648 dorsal fin musculature ZFA:0000648 Musculature that is part of the dorsal fin. The dorsal fin musculature is composed of one unit per fin ray that are arranged in series on each side of the body. Each unit is composed of one fin ray, three supporting pterygophores, and a set of paired depressor, erector, and inclinator muscles. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 TAO:0000649 cornu dorsale dorsal horn zebrafish_anatomy ZFA:0000649 dorsal horn spinal cord ZFA:0000649 TAO:0000650 dorsal motor roots of V zebrafish_anatomy ZFA:0000650 dorsal motor root of V ZFA:0000650 dorsal motor roots of V Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto the base of the first pelvic fin ray. TAO:0000651 arrector dorsalis pelvicus dorsal pelvic arrectors zebrafish_anatomy ZFA:0000651 dorsal pelvic arrector ZFA:0000651 Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto the base of the first pelvic fin ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 arrector dorsalis pelvicus ZFIN:ZDB-PUB-171118-8 dorsal pelvic arrectors The afferent sensory portion of the spinal nerve root. TAO:0000652 radix dorsalis zebrafish_anatomy ZFA:0000652 dorsal root ZFA:0000652 The afferent sensory portion of the spinal nerve root. http://en.wikipedia.org/wiki/Dorsal_root Multi-tissue structure that is the dorsal part of the thalamus and emerges ventral to the caudal portion of the ventral habenular nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000653 thalamus, pars dorsalis zebrafish_anatomy thalamus ZFA:0000653 dorsal thalamus ZFA:0000653 Multi-tissue structure that is the dorsal part of the thalamus and emerges ventral to the caudal portion of the ventral habenular nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 thalamus ZFIN:ZDB-PUB-100621-4 Abducens motor nucleus which is located at the level of the superior reticular formation. TAO:0000654 zebrafish_anatomy ZFA:0000654 rostral motor nucleus ZFA:0000654 Abducens motor nucleus which is located at the level of the superior reticular formation. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0000655 tractus opticus dorsomedialis zebrafish_anatomy ZFA:0000655 dorsomedial optic tract ZFA:0000655 The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate. TAO:0000656 ectopterygoids zebrafish_anatomy ZFA:0000656 ectopterygoid ZFA:0000656 The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate. GOC:ymb ORCiD:0000-0002-9900-7880 ectopterygoids The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL). TAO:0000657 endopterygoid mesopterygoid zebrafish_anatomy ZFA:0000657 entopterygoid ZFA:0000657 The entopterygoid is a dermal bone that forms the anteroventral and ventral surface of the orbit. It develops as a long sliver of bone developing in the membrane dorsomedial to the palatoquadrate cartilage (3.8 mm NL). GOC:ymb ORCiD:0000-0002-9900-7880 Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens. TAO:0000658 epibranchial bones zebrafish_anatomy ZFA:0000658 epibranchial bone ZFA:0000658 Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens. GOC:mh ORCiD:0000-0001-9114-8737 epibranchial bones true ZFA:0000659 A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone. TAO:0000660 zebrafish_anatomy ZFA:0000660 epural ZFA:0000660 A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone. TAO:curator Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum. TAO:0000661 exoccipitals zebrafish_anatomy ZFA:0000661 exoccipital ZFA:0000661 Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum. GOC:mh ORCiD:0000-0001-9114-8737 exoccipitals TAO:0000662 external pharyngoclavicularae zebrafish_anatomy ZFA:0000662 external pharyngoclavicularis ZFA:0000662 external pharyngoclavicularae Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones. ZFA:0001413 TAO:0000663 supratemporal tabular zebrafish_anatomy ZFA:0000663 extrascapula ZFA:0000663 Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones. TAO:curator Cranial nerve where motor axons innervate muscles derived from the second branchial arch. The motor neurons are generated in rhombomere 4. TAO:0000664 CN-VII facial nerve nervus facialis zebrafish_anatomy ZFA:0000664 cranial nerve VII ZFA:0000664 Cranial nerve where motor axons innervate muscles derived from the second branchial arch. The motor neurons are generated in rhombomere 4. ZFIN:ZDB-PUB-040109-20 TAO:0000665 zebrafish_anatomy ZFA:0000665 rostral root of abducens nerve ZFA:0000665 Artery of the gill filament. TAO:0000666 filamental arteries zebrafish_anatomy ZFA:0000666 filamental artery ZFA:0000666 Artery of the gill filament. GOC:cvs ORCiD:0000-0002-2244-7917 filamental arteries Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure. TAO:0000667 gill filaments zebrafish_anatomy ZFA:0000667 gill filament ZFA:0000667 Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 http://www.briancoad.com/Dictionary/G.htm gill filaments Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. The root is typically found at rhombomere 6. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons. TAO:0000668 CN-IX glossopharyngeal nerve nervus glossopharyngeus zebrafish_anatomy ZFA:0000668 cranial nerve IX ZFA:0000668 Cranial nerve that innervates gill muscles. Sometimes called a branchiomeric nerve because it innervates derivatives of the branchial arches. The root is typically found at rhombomere 6. This nerve contains sensory axons that carry both somatic and visceral sensory information as well as motor axons from branchiomotor neurons. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040109-20 ZFIN:ZDB-PUB-110727-5 The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. TAO:0000669 anterior kidney kidney marrow zebrafish_anatomy ZFA:0000669 head kidney ZFA:0000669 The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040923-1 Vein that carries blood away from the liver. TAO:0000670 hepatic veins zebrafish_anatomy ZFA:0000670 hepatic vein ZFA:0000670 Vein that carries blood away from the liver. GOC:cvs ORCiD:0000-0002-2244-7917 hepatic veins A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses. TAO:0000671 horizontal septum zebrafish_anatomy ZFA:0000671 horizontal myoseptum ZFA:0000671 A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 The hyomandibula is the large, dorsal-most member of the hyoid arch. It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints. A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle. TAO:0000672 hyomandibular zebrafish_anatomy ZFA:0000672 hyomandibula ZFA:0000672 The hyomandibula is the large, dorsal-most member of the hyoid arch. It begins ossifying in the dorsal edge of the hyosymplectic cartilage near the hyomandibular foramen (4.6 mm NL). Ossification spreads through the cartilage, and sheets of membrane bone form off the cartilage model anteriorly and posteriorly (6.6 mm). In the adult, the hyomandibula has cartilage-capped anterior and posterior articulating heads that meet the sphenotic-prootic fossa and the pterotic fossa, respectively, in synovial joints. A posterior knob of bone develops, also capped in cartilage, and it forms a synovial joint with the opercle. GOC:mh ORCiD:0000-0001-9114-8737 A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart. TAO:0000673 HA zebrafish_anatomy ZFA:0000673 hypobranchial artery ZFA:0000673 A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone. TAO:0000674 interopercles zebrafish_anatomy ZFA:0000674 interopercle ZFA:0000674 Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone. GOC:cvs ORCiD:0000-0002-2244-7917 interopercles true ZFA:0000675 Otolith that is part of the sacculus. ZFA:0001103 TAO:0000676 saccular otolith sacculith zebrafish_anatomy immature posterior otolith ZFA:0000676 sagitta ZFA:0000676 Otolith that is part of the sacculus. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020403-4 TAO:0000677 segmental intercostal arteries zebrafish_anatomy ZFA:0000677 segmental intercostal artery ZFA:0000677 segmental intercostal arteries Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.) TAO:0000678 sensory hair cells anterior macula zebrafish_anatomy ZFA:0000678 hair cell anterior macula ZFA:0000678 Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/hair_cell/hair_cell.html'>hair cells</a> by T. Whitfield.) MESH:68018069 ZFIN:ZDB-PUB-961014-576 sensory hair cells anterior macula TAO:0000679 sensory roots of facial nerves zebrafish_anatomy ZFA:0000679 sensory root of facial nerve ZFA:0000679 sensory roots of facial nerves Heart valve that forms between the atrium and the sinus venosus. TAO:0000680 sinoatrial valves zebrafish_anatomy ZFA:0000680 sinoatrial valve ZFA:0000680 Heart valve that forms between the atrium and the sinus venosus. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 sinoatrial valves Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra. TAO:0000681 neural postzygapophyses neural postzygopophysis zebrafish_anatomy ZFA:0000681 neural postzygapophysis ZFA:0000681 Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra. GOC:mh ORCiD:0000-0001-9114-8737 neural postzygapophyses TAO:0000682 spinal arteries zebrafish_anatomy ZFA:0000682 spinal artery ZFA:0000682 spinal arteries Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure and contains ciliated neurosecretory ependymal cells. From Neuroanatomy of the Zebrafish Brain. TAO:0000683 SCO zebrafish_anatomy ZFA:0000683 subcommissural organ ZFA:0000683 Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure and contains ciliated neurosecretory ependymal cells. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 CNS white matter (commissure) that runs between the optic tectal hemispheres. TAO:0000684 zebrafish_anatomy ZFA:0000684 intertectal commissure ZFA:0000684 CNS white matter (commissure) that runs between the optic tectal hemispheres. GOC:mh ORCiD:0000-0001-9114-8737 Abductor muscle that develops from the primitive pectoral fin abductor. The abductor superficialis originates along the anterior skeletal flange of the pectoral girdle, the bundles insert to fin ray base distal processes. TAO:0000685 abductor superficialis superficial abductors zebrafish_anatomy ZFA:0000685 superficial abductor ZFA:0000685 Abductor muscle that develops from the primitive pectoral fin abductor. The abductor superficialis originates along the anterior skeletal flange of the pectoral girdle, the bundles insert to fin ray base distal processes. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 abductor superficialis ZFIN:ZDB-PUB-050920-7 superficial abductors TAO:0000686 superficial gray and white zone superficial grey and white zones zebrafish_anatomy ZFA:0000686 superficial grey and white zone ZFA:0000686 superficial grey and white zones Multi-tissue structure that is the superficial part of the pretectum and is embedded in the optic tract. TAO:0000687 zebrafish_anatomy ZFA:0000687 superficial pretectum ZFA:0000687 Multi-tissue structure that is the superficial part of the pretectum and is embedded in the optic tract. GOC:mh ORCiD:0000-0001-9114-8737 Supporting cell that is part of the olfactory epithelium. Their cell bodies are more or less cylindrical, often with a pronounced basal part resting on the basal lamina. Their apical surface is covered with microvillous-like protrusions. Nuclei of olfactory support cell lie below the nuclear layer of olfactory sensory neurons, a feature that is reverse that of other vertebrates. The nuclei are less electron dense then those of the olfactory sensory neurons. TAO:0000688 zebrafish_anatomy support cells ZFA:0000688 Different nuclear position and morphology from CL_0000853. olfactory support cell ZFA:0000688 Supporting cell that is part of the olfactory epithelium. Their cell bodies are more or less cylindrical, often with a pronounced basal part resting on the basal lamina. Their apical surface is covered with microvillous-like protrusions. Nuclei of olfactory support cell lie below the nuclear layer of olfactory sensory neurons, a feature that is reverse that of other vertebrates. The nuclei are less electron dense then those of the olfactory sensory neurons. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060724-7 support cells Periventricular nucleus which is contiguous with the caudal part of the dorsal nucleus of the ventral telencephalon and the postcommissural nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000689 area ventralis telencephali, nucleus supracommissuralis supracommissural nucleus of V zebrafish_anatomy ZFA:0000689 supracommissural nucleus of ventral telencephalon ZFA:0000689 Periventricular nucleus which is contiguous with the caudal part of the dorsal nucleus of the ventral telencephalon and the postcommissural nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000690 zebrafish_anatomy ZFA:0000690 supraoptic commissure ZFA:0000690 Paired dermal bones that form the anterodorsal margin of the orbit. TAO:0000691 supraorbital bones zebrafish_anatomy ZFA:0000691 supraorbital bone ZFA:0000691 Paired dermal bones that form the anterodorsal margin of the orbit. GOC:mh ORCiD:0000-0001-9114-8737 supraorbital bones The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate. TAO:0000692 symplectics zebrafish_anatomy ZFA:0000692 symplectic ZFA:0000692 The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate. GOC:mh ORCiD:0000-0001-9114-8737 symplectics The tangential nucleus is located in rhombomere 5 and receives a dense utricular input. Tangential nucleus neurons project contralaterally to extraocular motoneurons and to multiple sites within the reticulospinal complex; unlike other classes of vestibular neuron, they modulate their firing in response to static head displacements. TAO:0000693 zebrafish_anatomy ZFA:0000693 tangential nucleus ZFA:0000693 The tangential nucleus is located in rhombomere 5 and receives a dense utricular input. Tangential nucleus neurons project contralaterally to extraocular motoneurons and to multiple sites within the reticulospinal complex; unlike other classes of vestibular neuron, they modulate their firing in response to static head displacements. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120702-13 ZFIN:ZDB-PUB-160324-18 Is a multi-tissue structure composed of dentine, enameloid and tooth pulp. The tips of the ceratobranchial 5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial 5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms. TAO:0000694 pharyngeal tooth teeth tooth zebrafish_anatomy ZFA:0000694 ceratobranchial 5 tooth ZFA:0000694 Is a multi-tissue structure composed of dentine, enameloid and tooth pulp. The tips of the ceratobranchial 5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial 5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms. GOC:mh ORCiD:0000-0001-9114-8737 teeth The anatomical space located between the lips and the oral valves. TAO:0000695 labial cavities zebrafish_anatomy ZFA:0000695 labial cavity ZFA:0000695 The anatomical space located between the lips and the oral valves. GOC:mh ORCiD:0000-0001-9114-8737 labial cavities TAO:0000696 lateral ventricle telencephalic vesicle ventriculi telencephali zebrafish_anatomy ZFA:0000696 telencephalic ventricle ZFA:0000696 ventriculi telencephali ZFIN:ZDB-PUB-961014-1280 Cranial nerve which exits the medulla oblongata and carries both sensory and motor axons to and from the facial region. The root is typically found at rhombomere 2. TAO:0000697 CN-V trigeminal nerve zebrafish_anatomy ZFA:0000697 ZDB-PUB-040109-20 The motor neuron cell bodies arise in rhombomeres 2 and 3. The neurons in r2 extend axons dorsolaterally to their exit point. The axons of branchiomotor neuron cell bodies in r3 initially extend dorsolaterally, then turn rostrally to reach their exit point in r2. The anterior turn occurs where the motor axons meet the ingrowing trigeminal sensory axons. cranial nerve V ZFA:0000697 Cranial nerve which exits the medulla oblongata and carries both sensory and motor axons to and from the facial region. The root is typically found at rhombomere 2. GOC:cvs GOC:mh ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110727-5 The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swim bladder. TAO:0000698 zebrafish_anatomy ZFA:0000698 tripus ZFA:0000698 The fourth Weberian ossicle. The tripus is a complex modification of the parapophysis and rib of the third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swim bladder. ZFIN:ZDB-PUB-031103-13 zebrafish_anatomy ZFA:0000699 Ural ossification is a process not a structure, thus it belongs in GO biologyical process not ZFA. ural ossification true ZFA:0000699 Otolith organ comprised of the macula utricle and lapillus. The lagena is part of the pars superior. The utricle functions in the detection of movement. TAO:0000700 utriculus zebrafish_anatomy ZFA:0000700 utricle ZFA:0000700 Otolith organ comprised of the macula utricle and lapillus. The lagena is part of the pars superior. The utricle functions in the detection of movement. GOC:ymb ORCiD:0000-0002-9900-7880 Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke. TAO:0000701 arrector ventralis ventral arrectors zebrafish_anatomy ZFA:0000701 Acts as antagonist to the dorsal arrector. ventral arrector ZFA:0000701 Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 arrector ventralis ZFIN:ZDB-PUB-050920-7 ventral arrectors TAO:0000702 ventral horns spinal cord zebrafish_anatomy ZFA:0000702 ventral horn spinal cord ZFA:0000702 ventral horns spinal cord Trigeminal motor nucleus that is located at the ventrolateral edge of the lateral longitudinal fascicle. TAO:0000703 zebrafish_anatomy ZFA:0000703 ventral motor nucleus trigeminal nerve ZFA:0000703 Trigeminal motor nucleus that is located at the ventrolateral edge of the lateral longitudinal fascicle. ISBN:3764351209 Deep, narrow muscle that arises anteriorly and laterally of the pelvic abductor profundus. It attaches to the first pelvic ray. TAO:0000704 ventral pelvic arrectors zebrafish_anatomy ZFA:0000704 ventral pelvic arrector ZFA:0000704 Deep, narrow muscle that arises anteriorly and laterally of the pelvic abductor profundus. It attaches to the first pelvic ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8v ventral pelvic arrectors The efferent motor portion of the spinal nerve root. TAO:0000705 ventral roots zebrafish_anatomy ZFA:0000705 ventral root ZFA:0000705 The efferent motor portion of the spinal nerve root. http://en.wikipedia.org/wiki/Nerve_root ventral roots The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. TAO:0000706 zebrafish_anatomy ZFA:0000706 posterior intestine ZFA:0000706 The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. ZFIN:ZDB-PUB-050120-6 Multi-tissue structure which is the ventral region of the median tuberal portion of the hypothalamus and is the most rostral region of the hypothalamus. From Neuroanatomy of the Zebrafish Brain. TAO:0000707 zebrafish_anatomy ZFA:0000707 ventral hypothalamic zone ZFA:0000707 Multi-tissue structure which is the ventral region of the median tuberal portion of the hypothalamus and is the most rostral region of the hypothalamus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000708 ventrolateral optic tracts zebrafish_anatomy ZFA:0000708 ventrolateral optic tract ZFA:0000708 ventrolateral optic tracts TAO:0000709 vestibulo-spinal tracts zebrafish_anatomy ZFA:0000709 vestibulo-spinal tract ZFA:0000709 vestibulo-spinal tracts TAO:0000710 commissural nucleus of Cajal nucleus commissuralis Cajal zebrafish_anatomy ZFA:0000710 viscerosensory commissural nucleus of Cajal ZFA:0000710 A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. TAO:0000711 DEL cells deep cell layer zebrafish_anatomy ZFA:0000711 DEL ZFA:0000711 A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. ZFIN:ZDB-PUB-961014-576 DEL cells deep cell layer ZFIN:ZDB-PUB-961014-576 The portion of the YSL that lies deep to the blastoderm during epiboly. TAO:0000712 I-YSL zebrafish_anatomy ZFA:0000712 internal yolk syncytial layer ZFA:0000712 The portion of the YSL that lies deep to the blastoderm during epiboly. ZFIN:ZDB-PUB-961014-576 I-YSL ZFIN:ZDB-PUB-961014-576 Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain. TAO:0000713 abducens motor nuclei abducens nucleus motor nucleus VI nVI zebrafish_anatomy ZFA:0000713 abducens motor nucleus ZFA:0000713 Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 abducens motor nuclei Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. TAO:0000714 APN nucleus praetectalis accessorius zebrafish_anatomy ZFA:0000714 accessory pretectal nucleus ZFA:0000714 Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Hyoid muscle that originates at the opercle and subopercle and inserts into the branchiostegal rays. The adductor hyohyoid is responsible for constriction of the branchiostegal membrane. TAO:0000715 adductors hyohyoid hyohyoidei adductores zebrafish_anatomy ZFA:0000715 adductor hyohyoid ZFA:0000715 Hyoid muscle that originates at the opercle and subopercle and inserts into the branchiostegal rays. The adductor hyohyoid is responsible for constriction of the branchiostegal membrane. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-080306-33 adductors hyohyoid Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch. TAO:0000716 ABA zebrafish_anatomy ZFA:0000716 afferent branchial artery ZFA:0000716 Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch. ZFIN:ZDB-PUB-010205-5 Apical ectodermal ridge that is part of the median fin fold. TAO:0000717 zebrafish_anatomy ZFA:0000717 apical ectodermal ridge median fin fold ZFA:0000717 Apical ectodermal ridge that is part of the median fin fold. GOC:cvs ORCiD:0000-0002-2244-7917 The epaxial region of somite 27 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000718 zebrafish_anatomy ZFA:0000718 epaxial region somite 27 ZFA:0000718 The epaxial region of somite 27 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 21. TAO:0000719 slow muscle cells somite 21 zebrafish_anatomy ZFA:0000719 slow muscle cell somite 21 ZFA:0000719 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 21. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 21 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 24. TAO:0000720 slow muscle cells somite 24 zebrafish_anatomy ZFA:0000720 slow muscle cell somite 24 ZFA:0000720 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 24. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 24 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 27. TAO:0000721 slow muscle cells somite 27 zebrafish_anatomy ZFA:0000721 slow muscle cell somite 27 ZFA:0000721 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 27. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 27 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 3. TAO:0000722 slow muscle cells somite 3 zebrafish_anatomy ZFA:0000722 slow muscle cell somite 3 ZFA:0000722 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 3. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 3 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 5. TAO:0000723 slow muscle cells somite 5 zebrafish_anatomy ZFA:0000723 slow muscle cell somite 5 ZFA:0000723 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 5. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 5 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 8. TAO:0000724 slow muscle cells somite 8 zebrafish_anatomy ZFA:0000724 slow muscle cell somite 8 ZFA:0000724 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 8. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 8 Undifferentiated mesodermal component of early trunk segment 11 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000725 zebrafish_anatomy ZFA:0000725 somite 11 ZFA:0000725 Undifferentiated mesodermal component of early trunk segment 11 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 14 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000726 zebrafish_anatomy ZFA:0000726 somite 14 ZFA:0000726 Undifferentiated mesodermal component of early trunk segment 14 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 17 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000727 zebrafish_anatomy ZFA:0000727 somite 17 ZFA:0000727 Undifferentiated mesodermal component of early trunk segment 17 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 2 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000728 zebrafish_anatomy ZFA:0000728 somite 2 ZFA:0000728 Undifferentiated mesodermal component of early trunk segment 2 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 3 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000729 zebrafish_anatomy ZFA:0000729 epaxial region somite 3 ZFA:0000729 The epaxial region of somite 3 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 23 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000730 zebrafish_anatomy ZFA:0000730 somite 23 ZFA:0000730 Undifferentiated mesodermal component of early tail segment 23 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 27 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000731 zebrafish_anatomy ZFA:0000731 somite 27 ZFA:0000731 Undifferentiated mesodermal component of early tail segment 27 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 3 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000732 zebrafish_anatomy ZFA:0000732 somite 3 ZFA:0000732 Undifferentiated mesodermal component of early trunk segment 3 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 7 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000733 zebrafish_anatomy ZFA:0000733 somite 7 ZFA:0000733 Undifferentiated mesodermal component of early trunk segment 7 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Vertebra which are the three most posterior vertebra supporting the caudal fin. TAO:0000734 caudal fin vertebra specialized centra/vertebrae zebrafish_anatomy ZFA:0000734 preural vertebra ZFA:0000734 Vertebra which are the three most posterior vertebra supporting the caudal fin. GOC:mh ORCiD:0000-0001-9114-8737 specialized centra/vertebrae Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses. TAO:0000735 haemal postzygapophysis hemal postzygapophyses hemal postzygopophysis zebrafish_anatomy ZFA:0000735 hemal postzygapophysis ZFA:0000735 Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses. GOC:mh ORCiD:0000-0001-9114-8737 hemal postzygapophyses true ZFA:0000736 Skeletal system that is part of the head, including the splanchnocranium, chondrocranium, and dermatocranium. TAO:0000737 cranial skeleton zebrafish_anatomy ZFA:0000737 cranium ZFA:0000737 Skeletal system that is part of the head, including the splanchnocranium, chondrocranium, and dermatocranium. GOC:mh ORCiD:0000-0001-9114-8737 Extraocular muscle innervated by the trochlear nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions at the scleral-corneal junction on the dorsal side of the adult eye, though they have distinct insertion sites in 5dpf fish. The dorsal oblique originates separately from the rectus muscles. The unsegmented paraxial head mesoderm contributes to the dorsal oblique muscles. All the oblique extraocular muscles originate together from the anterior ethmoid plate. TAO:0000738 dorsal oblique extraocular muscles superior oblique muscle zebrafish_anatomy ZFA:0000738 Mature form at Larval:Protruding-mouth. dorsal oblique extraocular muscle ZFA:0000738 Extraocular muscle innervated by the trochlear nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions at the scleral-corneal junction on the dorsal side of the adult eye, though they have distinct insertion sites in 5dpf fish. The dorsal oblique originates separately from the rectus muscles. The unsegmented paraxial head mesoderm contributes to the dorsal oblique muscles. All the oblique extraocular muscles originate together from the anterior ethmoid plate. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110512-18 ZFIN:ZDB-PUB-111205-9 dorsal oblique extraocular muscles superior oblique muscle ZFIN:ZDB-PUB-110512-18 The epaxial region of somite 11 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000739 zebrafish_anatomy ZFA:0000739 epaxial region somite 11 ZFA:0000739 The epaxial region of somite 11 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 5 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000740 zebrafish_anatomy ZFA:0000740 epaxial region somite 5 ZFA:0000740 The epaxial region of somite 5 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 14 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000741 zebrafish_anatomy ZFA:0000741 epaxial region somite 14 ZFA:0000741 The epaxial region of somite 14 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 17 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000742 zebrafish_anatomy ZFA:0000742 epaxial region somite 17 ZFA:0000742 The epaxial region of somite 17 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 2 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum TAO:0000743 zebrafish_anatomy ZFA:0000743 epaxial region somite 2 ZFA:0000743 The epaxial region of somite 2 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 22 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000744 zebrafish_anatomy ZFA:0000744 epaxial region somite 22 ZFA:0000744 The epaxial region of somite 22 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 25 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000745 zebrafish_anatomy ZFA:0000745 epaxial region somite 25 ZFA:0000745 The epaxial region of somite 25 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 28 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000746 zebrafish_anatomy ZFA:0000746 epaxial region somite 28 ZFA:0000746 The epaxial region of somite 28 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 30 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000747 zebrafish_anatomy ZFA:0000747 epaxial region somite 30 ZFA:0000747 The epaxial region of somite 30 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 6 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000748 zebrafish_anatomy ZFA:0000748 epaxial region somite 6 ZFA:0000748 The epaxial region of somite 6 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 9 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000749 zebrafish_anatomy ZFA:0000749 epaxial region somite 9 ZFA:0000749 The epaxial region of somite 9 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Fast muscle cell located in somite 10. TAO:0000750 fast muscle cells somite 10 fast muscle fiber somite 10 zebrafish_anatomy ZFA:0000750 fast muscle cell somite 10 ZFA:0000750 Fast muscle cell located in somite 10. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 10 The epaxial region of somite 8 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000751 zebrafish_anatomy ZFA:0000751 epaxial region somite 8 ZFA:0000751 The epaxial region of somite 8 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Fast muscle cell located in somite 13. TAO:0000752 fast muscle cells somite 13 fast muscle fiber somite 13 zebrafish_anatomy ZFA:0000752 fast muscle cell somite 13 ZFA:0000752 Fast muscle cell located in somite 13. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 13 Fast muscle cell located in somite 16. TAO:0000753 fast muscle cells somite 16 fast muscle fiber somite 16 zebrafish_anatomy ZFA:0000753 fast muscle cell somite 16 ZFA:0000753 Fast muscle cell located in somite 16. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 16 Fast muscle cell located in somite 19. TAO:0000754 fast muscle cells somite 19 fast muscle fiber somite 19 zebrafish_anatomy ZFA:0000754 fast muscle cell somite 19 ZFA:0000754 Fast muscle cell located in somite 19. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 19 Fast muscle cell located in somite 21. TAO:0000755 fast muscle cells somite 21 fast muscle fiber somite 21 zebrafish_anatomy ZFA:0000755 fast muscle cell somite 21 ZFA:0000755 Fast muscle cell located in somite 21. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 21 Fast muscle cell located in somite 24. TAO:0000756 fast muscle cells somite 24 fast muscle fiber somite 24 zebrafish_anatomy ZFA:0000756 fast muscle cell somite 24 ZFA:0000756 Fast muscle cell located in somite 24. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 24 Fast muscle cell located in somite 27. TAO:0000757 fast muscle cells somite 27 fast muscle fiber somite 27 zebrafish_anatomy ZFA:0000757 fast muscle cell somite 27 ZFA:0000757 Fast muscle cell located in somite 27. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 27 Fast muscle cell located in somite 3. TAO:0000758 fast muscle cells somite 3 fast muscle fiber somite 3 zebrafish_anatomy ZFA:0000758 fast muscle cell somite 3 ZFA:0000758 Fast muscle cell located in somite 3. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 3 Fast muscle cell located in somite 5. TAO:0000759 fast muscle cells somite 5 fast muscle fiber somite 5 zebrafish_anatomy ZFA:0000759 fast muscle cell somite 5 ZFA:0000759 Fast muscle cell located in somite 5. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 5 Fast muscle cell located in somite 8. TAO:0000760 fast muscle cells somite 8 fast muscle fiber somite 8 zebrafish_anatomy ZFA:0000760 fast muscle cell somite 8 ZFA:0000760 Fast muscle cell located in somite 8. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 8 Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. TAO:0000761 zebrafish_anatomy floor plate midbrain floorplate midbrain ZFA:0000761 basal plate midbrain region ZFA:0000761 Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. ISBN:0444517383 ZFIN:ZDB-PUB-961014-576 Cranial neural crest that gives rise to the facio-acoustic ganglion. TAO:0000762 facio acoustic neural crest zebrafish_anatomy ZFA:0000762 facio-acoustic neural crest ZFA:0000762 Cranial neural crest that gives rise to the facio-acoustic ganglion. GOC:ymb ORCiD:0000-0002-9900-7880 Floor plate that is part of the rhombomere 2. TAO:0000763 floor plate r2 floorplate r2 zebrafish_anatomy ZFA:0000763 floor plate rhombomere 2 ZFA:0000763 Floor plate that is part of the rhombomere 2. GOC:mh ORCiD:0000-0001-9114-8737 Floor plate that is part of the rhombomere 5. TAO:0000764 floor plate r5 floorplate r5 zebrafish_anatomy ZFA:0000764 floor plate rhombomere 5 ZFA:0000764 Floor plate that is part of the rhombomere 5. GOC:mh ORCiD:0000-0001-9114-8737 Floor plate that is part of the rhombomere 8. TAO:0000765 floor plate r8 floorplate r8 zebrafish_anatomy ZFA:0000765 floor plate rhombomere 8 ZFA:0000765 Floor plate that is part of the rhombomere 8. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue which is part of the valvula cerebelli and consists largely of axons and dendrites. TAO:0000766 zebrafish_anatomy ZFA:0000766 granular layer valvula cerebelli ZFA:0000766 Portion of tissue which is part of the valvula cerebelli and consists largely of axons and dendrites. GOC:mh ORCiD:0000-0001-9114-8737 The hypaxial region of somite 11 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000767 zebrafish_anatomy ZFA:0000767 hypaxial region somite 11 ZFA:0000767 The hypaxial region of somite 11 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 14 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000768 zebrafish_anatomy ZFA:0000768 hypaxial region somite 14 ZFA:0000768 The hypaxial region of somite 14 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 17 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000769 zebrafish_anatomy ZFA:0000769 hypaxial region somite 17 ZFA:0000769 The hypaxial region of somite 17 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 2 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000770 zebrafish_anatomy ZFA:0000770 hypaxial region somite 2 ZFA:0000770 The hypaxial region of somite 2 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 22 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000771 zebrafish_anatomy ZFA:0000771 hypaxial region somite 22 ZFA:0000771 The hypaxial region of somite 22 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 25 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000772 zebrafish_anatomy ZFA:0000772 hypaxial region somite 25 ZFA:0000772 The hypaxial region of somite 25 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Fast muscle cell located in somite 12. TAO:0000773 fast muscle cells somite 12 fast muscle fiber somite 12 zebrafish_anatomy ZFA:0000773 fast muscle cell somite 12 ZFA:0000773 Fast muscle cell located in somite 12. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 12 The hypaxial region of somite 28 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000774 zebrafish_anatomy ZFA:0000774 hypaxial region somite 28 ZFA:0000774 The hypaxial region of somite 28 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 30 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000775 zebrafish_anatomy ZFA:0000775 hypaxial region somite 30 ZFA:0000775 The hypaxial region of somite 30 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 6 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000776 zebrafish_anatomy ZFA:0000776 hypaxial region somite 6 ZFA:0000776 The hypaxial region of somite 6 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 9 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000777 zebrafish_anatomy ZFA:0000777 hypaxial region somite 9 ZFA:0000777 The hypaxial region of somite 9 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 A CNS interneuron located in the spinal cord. CL:0005000 TAO:0000778 interneurons spinal cord zebrafish_anatomy ZFA:0000778 spinal cord interneuron ZFA:0000778 A CNS interneuron located in the spinal cord. GOC:mh ORCiD:0000-0001-9114-8737 interneurons spinal cord Portion of the lateral forebrain bundle that lies in the telencephalon. TAO:0000779 lateral forebrain bundles telencephalon zebrafish_anatomy ZFA:0000779 lateral forebrain bundle telencephalon ZFA:0000779 Portion of the lateral forebrain bundle that lies in the telencephalon. GOC:cvs ORCiD:0000-0002-2244-7917 lateral forebrain bundles telencephalon Multi-tissue structure forming the sides of the lumen of the diencephalic region of the neural tube. TAO:0000780 lateral wall diencephalon zebrafish_anatomy ZFA:0000780 lateral wall diencephalic region ZFA:0000780 Multi-tissue structure forming the sides of the lumen of the diencephalic region of the neural tube. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 1. TAO:0000781 zebrafish_anatomy ZFA:0000781 lateral wall rhombomere 1 ZFA:0000781 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 1. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 4. TAO:0000782 zebrafish_anatomy ZFA:0000782 lateral wall rhombomere 4 ZFA:0000782 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 4. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 7. TAO:0000783 zebrafish_anatomy ZFA:0000783 lateral wall rhombomere 7 ZFA:0000783 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 7. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Fast muscle cell located in somite 15. TAO:0000784 fast muscle cells somite 15 fast muscle fiber somite 15 zebrafish_anatomy ZFA:0000784 fast muscle cell somite 15 ZFA:0000784 Fast muscle cell located in somite 15. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 15 Multi-tissue structure forming the sides of the lumen of the telencephalic region of the neural tube. TAO:0000785 lateral wall telencephalon zebrafish_anatomy ZFA:0000785 lateral wall telencephalic region ZFA:0000785 Multi-tissue structure forming the sides of the lumen of the telencephalic region of the neural tube. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 TAO:0000786 zebrafish_anatomy ZFA:0000786 medial migration pathway mesenchyme ZFA:0000786 TAO:0000787 zebrafish_anatomy ZFA:0000787 mesenchyme derived from head neural crest ZFA:0000787 Mesenchyme part of dorsal fin. TAO:0000788 zebrafish_anatomy ZFA:0000788 mesenchyme dorsal fin ZFA:0000788 Mesenchyme part of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Mesoderm that is part of the pectoral fin bud. TAO:0000789 mesoderm pectoral fin buds zebrafish_anatomy ZFA:0000789 mesoderm pectoral fin bud ZFA:0000789 Mesoderm that is part of the pectoral fin bud. GOC:mh ORCiD:0000-0001-9114-8737 mesoderm pectoral fin buds Muscle pioneer cell part of somite 10. TAO:0000790 muscle pioneers somite 10 zebrafish_anatomy ZFA:0000790 muscle pioneer somite 10 ZFA:0000790 Muscle pioneer cell part of somite 10. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 10 Muscle pioneer cell part of somite 13. TAO:0000791 muscle pioneers somite 13 zebrafish_anatomy ZFA:0000791 muscle pioneer somite 13 ZFA:0000791 Muscle pioneer cell part of somite 13. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 13 Muscle pioneer cell part of somite 16. TAO:0000792 muscle pioneers somite 16 zebrafish_anatomy ZFA:0000792 muscle pioneer somite 16 ZFA:0000792 Muscle pioneer cell part of somite 16. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 16 Muscle pioneer cell part of somite 19. TAO:0000793 muscle pioneers somite 19 zebrafish_anatomy ZFA:0000793 muscle pioneer somite 19 ZFA:0000793 Muscle pioneer cell part of somite 19. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 19 Muscle pioneer cell part of somite 22. TAO:0000794 muscle pioneers somite 22 zebrafish_anatomy ZFA:0000794 muscle pioneer somite 22 ZFA:0000794 Muscle pioneer cell part of somite 22. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 22 Fast muscle cell located in somite 18. TAO:0000795 fast muscle cells somite 18 fast muscle fiber somite 18 zebrafish_anatomy ZFA:0000795 fast muscle cell somite 18 ZFA:0000795 Fast muscle cell located in somite 18. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 18 Muscle pioneer cell part of somite 25. TAO:0000796 muscle pioneers somite 25 zebrafish_anatomy ZFA:0000796 muscle pioneer somite 25 ZFA:0000796 Muscle pioneer cell part of somite 25. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 25 Muscle pioneer cell part of somite 28. TAO:0000797 muscle pioneers somite 28 zebrafish_anatomy ZFA:0000797 muscle pioneer somite 28 ZFA:0000797 Muscle pioneer cell part of somite 28. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 28 Muscle pioneer cell part of somite 30. TAO:0000798 muscle pioneers somite 30 zebrafish_anatomy ZFA:0000798 muscle pioneer somite 30 ZFA:0000798 Muscle pioneer cell part of somite 30. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 30 Muscle pioneer cell part of somite 6. TAO:0000799 muscle pioneers somite 6 zebrafish_anatomy ZFA:0000799 muscle pioneer somite 6 ZFA:0000799 Muscle pioneer cell part of somite 6. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 6 Muscle pioneer cell part of somite 9. TAO:0000800 muscle pioneers somite 9 zebrafish_anatomy ZFA:0000800 muscle pioneer somite 9 ZFA:0000800 Muscle pioneer cell part of somite 9. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 9 Portion of somite 11 that gives rise to body wall muscle masses. TAO:0000801 zebrafish_anatomy ZFA:0000801 myotome somite 11 ZFA:0000801 Portion of somite 11 that gives rise to body wall muscle masses. ZFIN:ZDB-PUB-961014-576 Portion of somite 15 that gives rise to body wall muscle masses. TAO:0000802 zebrafish_anatomy ZFA:0000802 myotome somite 15 ZFA:0000802 Portion of somite 15 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 18 that gives rise to body wall muscle masses. TAO:0000803 zebrafish_anatomy ZFA:0000803 myotome somite 18 ZFA:0000803 Portion of somite 18 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 20 that gives rise to body wall muscle masses. TAO:0000804 zebrafish_anatomy ZFA:0000804 myotome somite 20 ZFA:0000804 Portion of somite 20 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 23 that gives rise to body wall muscle masses. TAO:0000805 zebrafish_anatomy ZFA:0000805 myotome somite 23 ZFA:0000805 Portion of somite 23 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Fast muscle cell located in somite 20. TAO:0000806 fast muscle cells somite 20 fast muscle fiber somite 20 zebrafish_anatomy ZFA:0000806 fast muscle cell somite 20 ZFA:0000806 Fast muscle cell located in somite 20. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 20 Portion of somite 26 that gives rise to body wall muscle masses. TAO:0000807 zebrafish_anatomy ZFA:0000807 myotome somite 26 ZFA:0000807 Portion of somite 26 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 29 that gives rise to body wall muscle masses. TAO:0000808 zebrafish_anatomy ZFA:0000808 myotome somite 29 ZFA:0000808 Portion of somite 29 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 4 that gives rise to body wall muscle masses. TAO:0000809 zebrafish_anatomy ZFA:0000809 myotome somite 4 ZFA:0000809 Portion of somite 4 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 7 that gives rise to body wall muscle masses. TAO:0000810 zebrafish_anatomy ZFA:0000810 myotome somite 7 ZFA:0000810 Portion of somite 7 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Cranial neural crest that is part of the diencephalon. TAO:0000811 diencephalic neural crest zebrafish_anatomy ZFA:0000811 neural crest diencephalon ZFA:0000811 Cranial neural crest that is part of the diencephalon. GOC:ymb ORCiD:0000-0002-9900-7880 Cranial neural crest that is part of the telencephalon. TAO:0000812 zebrafish_anatomy ZFA:0000812 neural crest telencephalon ZFA:0000812 Cranial neural crest that is part of the telencephalon. GOC:ymb ORCiD:0000-0002-9900-7880 Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000813 neuromast infraorbital neuromasts infraorbital zebrafish_anatomy ZFA:0000813 infraorbital lateral line neuromast ZFA:0000813 Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts infraorbital Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000814 neuromast opercular neuromasts opercular zebrafish_anatomy ZFA:0000814 opercular lateral line neuromast ZFA:0000814 Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts opercular TAO:0000815 zebrafish_anatomy ZFA:0000815 nucleus of the medial longitudinal fasciculus medulla oblongata ZFA:0000815 The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds. TAO:0000816 zebrafish_anatomy ZFA:0000816 oral epithelium ZFA:0000816 The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds. ZFIN:ZDB-PUB-060921-12 ZFIN:ZDB-PUB-091204-24 Fast muscle cell located in somite 23. TAO:0000817 fast muscle cells somite 23 fast muscle fiber somite 23 zebrafish_anatomy ZFA:0000817 fast muscle cell somite 23 ZFA:0000817 Fast muscle cell located in somite 23. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 23 Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives. TAO:0000818 post-otic neural crest zebrafish_anatomy ZFA:0000818 vagal neural crest ZFA:0000818 Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives. GOC:ymb ORCiD:0000-0002-9900-7880 Periventricular nucleus which is contiguous with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0000819 area ventralis telencephali, nucleus postcommissuralis postcommissural nucleus of V zebrafish_anatomy ZFA:0000819 postcommissural nucleus of ventral telencephalon ZFA:0000819 Periventricular nucleus which is contiguous with the supracommissural nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 TAO:0000820 presumptive neurons neural tube zebrafish_anatomy ZFA:0000820 This term was obsoleted because we could not determine if it was a presumptive neuron part of the neural tube or a neuron part of the presumptive neural tube. presumptive neuron neural tube true ZFA:0000820 presumptive neurons neural tube TAO:0000821 primary neurons hindbrain zebrafish_anatomy ZFA:0000821 primary neuron hindbrain ZFA:0000821 primary neurons hindbrain Hindbrain segment or neuromere posterior to rhombomere 1. TAO:0000822 r2 zebrafish_anatomy ZFA:0000822 rhombomere 2 ZFA:0000822 Hindbrain segment or neuromere posterior to rhombomere 1. ZFIN:ZDB-PUB-961014-576 Hindbrain segment or neuromere posterior to rhombomere 4. TAO:0000823 r5 zebrafish_anatomy ZFA:0000823 rhombomere 5 ZFA:0000823 Hindbrain segment or neuromere posterior to rhombomere 4. ZFIN:ZDB-PUB-961014-576 Roof plate that is part of rhombomere 2. TAO:0000824 zebrafish_anatomy ZFA:0000824 roof plate rhombomere 2 ZFA:0000824 Roof plate that is part of rhombomere 2. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Roof plate that is part of rhombomere 6. TAO:0000825 zebrafish_anatomy ZFA:0000825 roof plate rhombomere 6 ZFA:0000825 Roof plate that is part of rhombomere 6. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to audition. From Neuroanatomy of the Zebrafish Brain. TAO:0000826 central nucleus of semicircular torus nucleus centralis tori semicircularis zebrafish_anatomy ZFA:0000826 central nucleus torus semicircularis ZFA:0000826 Midbrain nucleus which is part of the torus semicircularis and is the target of ascending octavolateralis systems related to audition. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Fast muscle cell located in somite 26. TAO:0000827 fast muscle cells somite 26 fast muscle fiber somite 26 zebrafish_anatomy ZFA:0000827 fast muscle cell somite 26 ZFA:0000827 Fast muscle cell located in somite 26. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 26 Roof plate that is part of rhombomere 5. TAO:0000828 zebrafish_anatomy ZFA:0000828 roof plate rhombomere 5 ZFA:0000828 Roof plate that is part of rhombomere 5. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Ventromedial region of somite 11 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000829 zebrafish_anatomy ZFA:0000829 sclerotome somite 11 ZFA:0000829 Ventromedial region of somite 11 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 14 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000830 zebrafish_anatomy ZFA:0000830 sclerotome somite 14 ZFA:0000830 Ventromedial region of somite 14 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 17 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000831 zebrafish_anatomy ZFA:0000831 sclerotome somite 17 ZFA:0000831 Ventromedial region of somite 17 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 2 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000832 zebrafish_anatomy ZFA:0000832 sclerotome somite 2 ZFA:0000832 Ventromedial region of somite 2 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 22 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000833 zebrafish_anatomy ZFA:0000833 sclerotome somite 22 ZFA:0000833 Ventromedial region of somite 22 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 25 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000834 zebrafish_anatomy ZFA:0000834 sclerotome somite 25 ZFA:0000834 Ventromedial region of somite 25 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 28 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000835 zebrafish_anatomy ZFA:0000835 sclerotome somite 28 ZFA:0000835 Ventromedial region of somite 28 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 30 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000836 zebrafish_anatomy ZFA:0000836 sclerotome somite 30 ZFA:0000836 Ventromedial region of somite 30 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 6 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000837 zebrafish_anatomy ZFA:0000837 sclerotome somite 6 ZFA:0000837 Ventromedial region of somite 6 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Fast muscle cell located in somite 29. TAO:0000838 fast muscle cells somite 29 fast muscle fiber somite 29 zebrafish_anatomy ZFA:0000838 fast muscle cell somite 29 ZFA:0000838 Fast muscle cell located in somite 29. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 29 Ventromedial region of somite 9 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000839 zebrafish_anatomy ZFA:0000839 sclerotome somite 9 ZFA:0000839 Ventromedial region of somite 9 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 11. TAO:0000840 slow muscle cells somite 11 zebrafish_anatomy ZFA:0000840 slow muscle cell somite 11 ZFA:0000840 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 11. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 11 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 14. TAO:0000841 slow muscle cells somite 14 zebrafish_anatomy ZFA:0000841 slow muscle cell somite 14 ZFA:0000841 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 14. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 14 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 17. TAO:0000842 slow muscle cells somite 17 zebrafish_anatomy ZFA:0000842 slow muscle cell somite 17 ZFA:0000842 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 17. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 17 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 2. TAO:0000843 slow muscle cells somite 2 zebrafish_anatomy ZFA:0000843 slow muscle cell somite 2 ZFA:0000843 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 2. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 2 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 22. TAO:0000844 slow muscle cells somite 22 zebrafish_anatomy ZFA:0000844 slow muscle cell somite 22 ZFA:0000844 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 22. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 22 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 25. TAO:0000845 slow muscle cells somite 25 zebrafish_anatomy ZFA:0000845 slow muscle cell somite 25 ZFA:0000845 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 25. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 25 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 28. TAO:0000846 slow muscle cells somite 28 zebrafish_anatomy ZFA:0000846 slow muscle cell somite 28 ZFA:0000846 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 28. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 28 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 30. TAO:0000847 slow muscle cells somite 30 zebrafish_anatomy ZFA:0000847 slow muscle cell somite 30 ZFA:0000847 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 30. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 30 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 6. TAO:0000848 slow muscle cells somite 6 zebrafish_anatomy ZFA:0000848 slow muscle cell somite 6 ZFA:0000848 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 6. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 6 Fast muscle cell located in somite 4. TAO:0000849 fast muscle cells somite 4 fast muscle fiber somite 4 zebrafish_anatomy ZFA:0000849 fast muscle cell somite 4 ZFA:0000849 Fast muscle cell located in somite 4. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 4 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 9. TAO:0000850 slow muscle cells somite 9 zebrafish_anatomy ZFA:0000850 slow muscle cell somite 9 ZFA:0000850 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 9. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 9 Undifferentiated mesodermal component of early trunk segment 12 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000851 zebrafish_anatomy ZFA:0000851 somite 12 ZFA:0000851 Undifferentiated mesodermal component of early trunk segment 12 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 15 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000852 zebrafish_anatomy ZFA:0000852 somite 15 ZFA:0000852 Undifferentiated mesodermal component of early trunk segment 15 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk or tail segment 18 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000853 zebrafish_anatomy ZFA:0000853 somite 18 ZFA:0000853 Undifferentiated mesodermal component of early trunk or tail segment 18 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail 21 segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000854 zebrafish_anatomy ZFA:0000854 somite 21 ZFA:0000854 Undifferentiated mesodermal component of early tail 21 segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 24 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000855 zebrafish_anatomy ZFA:0000855 somite 24 ZFA:0000855 Undifferentiated mesodermal component of early tail segment 24 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 28 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000856 zebrafish_anatomy ZFA:0000856 somite 28 ZFA:0000856 Undifferentiated mesodermal component of early tail segment 28 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 4 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000857 zebrafish_anatomy ZFA:0000857 somite 4 ZFA:0000857 Undifferentiated mesodermal component of early trunk segment 4 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 8 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000858 zebrafish_anatomy ZFA:0000858 somite 8 ZFA:0000858 Undifferentiated mesodermal component of early trunk segment 8 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Modified hemal arches and spines that support the caudal fin. In developing fish they articulate with preural 1, ural1 and ural2; in adults they articulate with the urostyle. TAO:0000859 ha(pu) hemal arch (preural) specialized haemal arch and spine specialized hemal arches and spines zebrafish_anatomy ZFA:0000859 specialized hemal arch and spine ZFA:0000859 Modified hemal arches and spines that support the caudal fin. In developing fish they articulate with preural 1, ural1 and ural2; in adults they articulate with the urostyle. ZFIN:ZDB-PUB-011008-1 hemal arch (preural) ZFIN:ZDB-PUB-011008-1 specialized hemal arches and spines Fast muscle cell located in somite 7. TAO:0000860 fast muscle cells somite 7 fast muscle fiber somite 7 zebrafish_anatomy ZFA:0000860 fast muscle cell somite 7 ZFA:0000860 Fast muscle cell located in somite 7. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 7 Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. All the oblique extraocular muscles originate together from the anterior ethmoid plate. The ventral oblique is innervated by the oculomotor nerve. TAO:0000861 inferior oblique muscle ventral oblique extraocular muscles zebrafish_anatomy ZFA:0000861 Mature form at Hatching:Pec-fin. ventral oblique extraocular muscle ZFA:0000861 Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. All the oblique extraocular muscles originate together from the anterior ethmoid plate. The ventral oblique is innervated by the oculomotor nerve. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111205-9 inferior oblique muscle ZFIN:ZDB-PUB-110512-18 ventral oblique extraocular muscles Median fin skeleton supporting the caudal fin. TAO:0000862 zebrafish_anatomy ZFA:0000862 caudal fin skeleton ZFA:0000862 Median fin skeleton supporting the caudal fin. TAO:curator Anatomical cluster that is part of the cranium and composed of dermally derived bones. TAO:0000863 dermal bone cranium zebrafish_anatomy ZFA:0000863 dermatocranium ZFA:0000863 Anatomical cluster that is part of the cranium and composed of dermally derived bones. GOC:mh ORCiD:0000-0001-9114-8737 The epaxial region of somite 1 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000864 zebrafish_anatomy ZFA:0000864 epaxial region somite 1 ZFA:0000864 The epaxial region of somite 1 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 12 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000865 zebrafish_anatomy ZFA:0000865 epaxial region somite 12 ZFA:0000865 The epaxial region of somite 12 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 15 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000866 zebrafish_anatomy ZFA:0000866 epaxial region somite 15 ZFA:0000866 The epaxial region of somite 15 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 18 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000867 zebrafish_anatomy ZFA:0000867 epaxial region somite 18 ZFA:0000867 The epaxial region of somite 18 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 20 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum TAO:0000868 zebrafish_anatomy ZFA:0000868 epaxial region somite 20 ZFA:0000868 The epaxial region of somite 20 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 23 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000869 zebrafish_anatomy ZFA:0000869 epaxial region somite 23 ZFA:0000869 The epaxial region of somite 23 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 26 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000870 zebrafish_anatomy ZFA:0000870 epaxial region somite 26 ZFA:0000870 The epaxial region of somite 26 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Floor plate that is part of the diencephalon. TAO:0000871 floorplate diencephalon zebrafish_anatomy ZFA:0000871 floor plate diencephalic region ZFA:0000871 Floor plate that is part of the diencephalon. GOC:mh ORCiD:0000-0001-9114-8737 The epaxial region of somite 29 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000872 zebrafish_anatomy ZFA:0000872 epaxial region somite 29 ZFA:0000872 The epaxial region of somite 29 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 4 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000873 zebrafish_anatomy ZFA:0000873 epaxial region somite 4 ZFA:0000873 The epaxial region of somite 4 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 7 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000874 zebrafish_anatomy ZFA:0000874 epaxial region somite 7 ZFA:0000874 The epaxial region of somite 7 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Cranial neural crest that is part of the facial region. ZFA:0001194 TAO:0000875 zebrafish_anatomy ZFA:0000875 facial neural crest true ZFA:0000875 Cranial neural crest that is part of the facial region. GOC:ymb ORCiD:0000-0002-9900-7880 Fast muscle cell located in somite 11. TAO:0000876 fast muscle cells somite 11 fast muscle fiber somite 11 zebrafish_anatomy ZFA:0000876 fast muscle cell somite 11 ZFA:0000876 Fast muscle cell located in somite 11. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 11 Fast muscle cell located in somite 14. TAO:0000877 fast muscle cells somite 14 fast muscle fiber somite 14 zebrafish_anatomy ZFA:0000877 fast muscle cell somite 14 ZFA:0000877 Fast muscle cell located in somite 14. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 14 Fast muscle cell located in somite 17. TAO:0000878 fast muscle cells somite 17 fast muscle fiber somite 17 zebrafish_anatomy ZFA:0000878 fast muscle cell somite 17 ZFA:0000878 Fast muscle cell located in somite 17. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 17 Fast muscle cell located in somite 2. TAO:0000879 fast muscle cells somite 2 fast muscle fiber somite 2 zebrafish_anatomy ZFA:0000879 fast muscle cell somite 2 ZFA:0000879 Fast muscle cell located in somite 2. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 2 Fast muscle cell located in somite 22. TAO:0000880 fast muscle cells somite 22 fast muscle fiber somite 22 zebrafish_anatomy ZFA:0000880 fast muscle cell somite 22 ZFA:0000880 Fast muscle cell located in somite 22. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 22 Fast muscle cell located in somite 25. TAO:0000881 fast muscle cells somite 25 fast muscle fiber somite 25 zebrafish_anatomy ZFA:0000881 fast muscle cell somite 25 ZFA:0000881 Fast muscle cell located in somite 25. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 25 Floor plate that is part of the rhombomere 1. TAO:0000882 floor plate r1 zebrafish_anatomy ZFA:0000882 floor plate rhombomere 1 ZFA:0000882 Floor plate that is part of the rhombomere 1. GOC:mh ORCiD:0000-0001-9114-8737 Fast muscle cell located in somite 28. TAO:0000883 fast muscle cells somite 28 fast muscle fiber somite 28 zebrafish_anatomy ZFA:0000883 fast muscle cell somite 28 ZFA:0000883 Fast muscle cell located in somite 28. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 28 Fast muscle cell located in somite 30. TAO:0000884 fast muscle cells somite 30 fast muscle fiber somite 30 zebrafish_anatomy ZFA:0000884 fast muscle cell somite 30 ZFA:0000884 Fast muscle cell located in somite 30. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 30 Fast muscle cell located in somite 6. TAO:0000885 fast muscle cells somite 6 fast muscle fiber somite 6 zebrafish_anatomy ZFA:0000885 fast muscle cell somite 6 ZFA:0000885 Fast muscle cell located in somite 6. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 6 Fast muscle cell located in somite 9. TAO:0000886 fast muscle cells somite 9 fast muscle fiber somite 9 zebrafish_anatomy ZFA:0000886 fast muscle cell somite 9 ZFA:0000886 Fast muscle cell located in somite 9. GOC:ymb ORCiD:0000-0002-9900-7880 fast muscle cells somite 9 Floor plate that is part of the neural rod. TAO:0000887 floorplate neural rod zebrafish_anatomy ZFA:0000887 floor plate neural rod ZFA:0000887 Floor plate that is part of the neural rod. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Floor plate that is part of the rhombomere 3. TAO:0000888 floor plate r3 floorplate r3 zebrafish_anatomy ZFA:0000888 floor plate rhombomere 3 ZFA:0000888 Floor plate that is part of the rhombomere 3. GOC:mh ORCiD:0000-0001-9114-8737 Floor plate that is part of the rhombomere 6. TAO:0000889 floor plate r6 floorplate r6 zebrafish_anatomy ZFA:0000889 floor plate rhombomere 6 ZFA:0000889 Floor plate that is part of the rhombomere 6. GOC:mh ORCiD:0000-0001-9114-8737 Floor plate that is part of the spinal cord. TAO:0000890 floorplate spinal cord zebrafish_anatomy ZFA:0000890 floor plate spinal cord region ZFA:0000890 Floor plate that is part of the spinal cord. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 The hypaxial region of somite 1 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000891 zebrafish_anatomy ZFA:0000891 hypaxial region somite 1 ZFA:0000891 The hypaxial region of somite 1 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 12 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000892 zebrafish_anatomy ZFA:0000892 hypaxial region somite 12 ZFA:0000892 The hypaxial region of somite 12 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Floor plate that is part of the rhombomere 4. TAO:0000893 floor plate r4 floorplate r4 zebrafish_anatomy ZFA:0000893 floor plate rhombomere 4 ZFA:0000893 Floor plate that is part of the rhombomere 4. GOC:mh ORCiD:0000-0001-9114-8737 The hypaxial region of somite 15 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000894 zebrafish_anatomy ZFA:0000894 hypaxial region somite 15 ZFA:0000894 The hypaxial region of somite 15 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 18 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000895 zebrafish_anatomy ZFA:0000895 hypaxial region somite 18 ZFA:0000895 The hypaxial region of somite 18 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 20 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000896 zebrafish_anatomy ZFA:0000896 hypaxial region somite 20 ZFA:0000896 The hypaxial region of somite 20 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 23 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000897 zebrafish_anatomy ZFA:0000897 hypaxial region somite 23 ZFA:0000897 The hypaxial region of somite 23 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 26 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000898 zebrafish_anatomy ZFA:0000898 hypaxial region somite 26 ZFA:0000898 The hypaxial region of somite 26 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 29 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000899 zebrafish_anatomy ZFA:0000899 hypaxial region somite 29 ZFA:0000899 The hypaxial region of somite 29 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 4 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000900 zebrafish_anatomy ZFA:0000900 hypaxial region somite 4 ZFA:0000900 The hypaxial region of somite 4 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 7 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000901 zebrafish_anatomy ZFA:0000901 hypaxial region somite 7 ZFA:0000901 The hypaxial region of somite 7 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Musculature associated with the hypurals. TAO:0000902 hypural muscles zebrafish_anatomy ZFA:0000902 hypural muscle ZFA:0000902 Musculature associated with the hypurals. GOC:cvs ORCiD:0000-0002-2244-7917 hypural muscles TAO:0000903 zebrafish_anatomy ZFA:0000903 ZDB-PUB-010601-11 says there are 4 sub-nuclei. interpeduncular nucleus tegmentum ZFA:0000903 Floor plate that is part of the rhombomere 7. TAO:0000904 floor plate r7 floorplate r7 zebrafish_anatomy ZFA:0000904 floor plate rhombomere 7 ZFA:0000904 Floor plate that is part of the rhombomere 7. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0000905 zebrafish_anatomy ZFA:0000905 lateral mesenchyme derived from mesoderm ZFA:0000905 Multi-tissue structure forming the sides of the lumen of the midbrain region of the neural tube. TAO:0000906 lateral wall midbrain zebrafish_anatomy ZFA:0000906 lateral wall midbrain region ZFA:0000906 Multi-tissue structure forming the sides of the lumen of the midbrain region of the neural tube. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 2. TAO:0000907 zebrafish_anatomy ZFA:0000907 lateral wall rhombomere 2 ZFA:0000907 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 2. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 5. TAO:0000908 zebrafish_anatomy ZFA:0000908 lateral wall rhombomere 5 ZFA:0000908 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 5. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 8. TAO:0000909 zebrafish_anatomy ZFA:0000909 lateral wall rhombomere 8 ZFA:0000909 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 8. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 TAO:0000910 medial forebrain bundles telencephalon zebrafish_anatomy ZFA:0000910 medial forebrain bundle telencephalon ZFA:0000910 medial forebrain bundles telencephalon ZFA:0001647 zebrafish_anatomy ZFA:0000911 medial pterygiophores dorsal fin true ZFA:0000911 Mesenchyme part of median fin fold. TAO:0000912 zebrafish_anatomy ZFA:0000912 mesenchyme median fin fold ZFA:0000912 Mesenchyme part of median fin fold. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue which is part of the valvula cerebelli and contains neuronal cell bodies. TAO:0000913 zebrafish_anatomy ZFA:0000913 molecular layer valvula cerebelli ZFA:0000913 Portion of tissue which is part of the valvula cerebelli and contains neuronal cell bodies. GOC:mh ORCiD:0000-0001-9114-8737 Floor plate that is part of the telencephalon. TAO:0000914 floorplate telencephalon zebrafish_anatomy ZFA:0000914 floor plate telencephalic region ZFA:0000914 Floor plate that is part of the telencephalon. GOC:mh ORCiD:0000-0001-9114-8737 Muscle pioneer cell part of somite 11. TAO:0000915 muscle pioneers somite 11 zebrafish_anatomy ZFA:0000915 muscle pioneer somite 11 ZFA:0000915 Muscle pioneer cell part of somite 11. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 11 Muscle pioneer cell part of somite 14. TAO:0000916 muscle pioneers somite 14 zebrafish_anatomy ZFA:0000916 muscle pioneer somite 14 ZFA:0000916 Muscle pioneer cell part of somite 14. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 14 Muscle pioneer cell part of somite 17. TAO:0000917 muscle pioneers somite 17 zebrafish_anatomy ZFA:0000917 muscle pioneer somite 17 ZFA:0000917 Muscle pioneer cell part of somite 17. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 17 Muscle pioneer cell part of somite 20. TAO:0000918 muscle pioneers somite 20 zebrafish_anatomy ZFA:0000918 muscle pioneer somite 20 ZFA:0000918 Muscle pioneer cell part of somite 20. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 20 Muscle pioneer cell part of somite 23. TAO:0000919 muscle pioneers somite 23 zebrafish_anatomy ZFA:0000919 muscle pioneer somite 23 ZFA:0000919 Muscle pioneer cell part of somite 23. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 23 Muscle pioneer cell part of somite 26. TAO:0000920 muscle pioneers somite 26 zebrafish_anatomy ZFA:0000920 muscle pioneer somite 26 ZFA:0000920 Muscle pioneer cell part of somite 26. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 26 Muscle pioneer cell part of somite 29. TAO:0000921 muscle pioneers somite 29 zebrafish_anatomy ZFA:0000921 muscle pioneer somite 29 ZFA:0000921 Muscle pioneer cell part of somite 29. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 29 Muscle pioneer cell part of somite 4. TAO:0000922 muscle pioneers somite 4 zebrafish_anatomy ZFA:0000922 muscle pioneer somite 4 ZFA:0000922 Muscle pioneer cell part of somite 4. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 4 Muscle pioneer cell part of somite 7. TAO:0000923 muscle pioneers somite 7 zebrafish_anatomy ZFA:0000923 muscle pioneer somite 7 ZFA:0000923 Muscle pioneer cell part of somite 7. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 7 Portion of somite 1 that gives rise to body wall muscle masses. TAO:0000924 zebrafish_anatomy ZFA:0000924 myotome somite 1 ZFA:0000924 Portion of somite 1 that gives rise to body wall muscle masses. ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 10 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000925 zebrafish_anatomy ZFA:0000925 hypaxial region somite 10 ZFA:0000925 The hypaxial region of somite 10 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 12 that gives rise to body wall muscle masses. TAO:0000926 zebrafish_anatomy ZFA:0000926 myotome somite 12 ZFA:0000926 Portion of somite 12 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 16 that gives rise to body wall muscle masses. TAO:0000927 zebrafish_anatomy ZFA:0000927 myotome somite 16 ZFA:0000927 Portion of somite 16 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 19 that gives rise to body wall muscle masses. TAO:0000928 zebrafish_anatomy ZFA:0000928 myotome somite 19 ZFA:0000928 Portion of somite 19 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 21 that gives rise to body wall muscle masses. TAO:0000929 zebrafish_anatomy ZFA:0000929 myotome somite 21 ZFA:0000929 Portion of somite 21 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 24 that gives rise to body wall muscle masses. TAO:0000930 zebrafish_anatomy ZFA:0000930 myotome somite 24 ZFA:0000930 Portion of somite 24 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 27 that gives rise to body wall muscle masses. TAO:0000931 zebrafish_anatomy ZFA:0000931 myotome somite 27 ZFA:0000931 Portion of somite 27 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 3 that gives rise to body wall muscle masses. TAO:0000932 zebrafish_anatomy ZFA:0000932 myotome somite 3 ZFA:0000932 Portion of somite 3 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 5 that gives rise to body wall muscle masses. TAO:0000933 zebrafish_anatomy ZFA:0000933 myotome somite 5 ZFA:0000933 Portion of somite 5 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 8 that gives rise to body wall muscle masses. TAO:0000934 zebrafish_anatomy ZFA:0000934 myotome somite 8 ZFA:0000934 Portion of somite 8 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Neural crest that is part of the midbrain. TAO:0000935 mesencephalic neural crest zebrafish_anatomy ZFA:0000935 neural crest midbrain ZFA:0000935 Neural crest that is part of the midbrain. GOC:ymb ORCiD:0000-0002-9900-7880 mesencephalic neural crest GOC:ymb ORCiD:0000-0002-9900-7880 Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally. TAO:0000936 dorsal fin distal radials zebrafish_anatomy ZFA:0000936 dorsal fin distal radial ZFA:0000936 Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally. GOC:cvs ORCiD:0000-0002-2244-7917 dorsal fin distal radials The hypaxial region of somite 13 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000937 zebrafish_anatomy ZFA:0000937 hypaxial region somite 13 ZFA:0000937 The hypaxial region of somite 13 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord. TAO:0000938 canalis centralis neural lumen zebrafish_anatomy ZFA:0000938 central canal ZFA:0000938 Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord. GOC:mh ORCiD:0000-0001-9114-8737 Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000939 neuromast middle neuromasts middle zebrafish_anatomy ZFA:0000939 middle lateral line neuromast ZFA:0000939 Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts middle Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000940 neuromast posterior neuromasts posterior zebrafish_anatomy ZFA:0000940 posterior lateral line neuromast ZFA:0000940 Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts posterior Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure, and extends axons into the medial longitudinal fasciculus. From Neuroanatomy of the Zebrafish Brain. TAO:0000941 zebrafish_anatomy ZFA:0000941 nucleus of the medial longitudinal fasciculus synencephalon ZFA:0000941 Diencephalic nucleus that is part of the synencephalon, is located adjacent to the caudal commissure, and extends axons into the medial longitudinal fasciculus. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 true ZFA:0000942 Skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid. TAO:0000943 zebrafish_anatomy ZFA:0000943 pectoral fin skeleton ZFA:0000943 Skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid. TAO:curator One of eight distinct lateral lines in the 4-day larva. The posterior lateral line runs along the horizontal myoseptum from the otic vessicle to the caudal fin. Lateral lines form a sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0000944 pll zebrafish_anatomy midbody lateral line midtrunk line ZFA:0000944 posterior lateral line ZFA:0000944 One of eight distinct lateral lines in the 4-day larva. The posterior lateral line runs along the horizontal myoseptum from the otic vessicle to the caudal fin. Lateral lines form a sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-110811-14 true ZFA:0000945 The hypaxial region of somite 16 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000946 zebrafish_anatomy ZFA:0000946 hypaxial region somite 16 ZFA:0000946 The hypaxial region of somite 16 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials. TAO:0000947 dorsal fin proximal radials zebrafish_anatomy ZFA:0000947 dorsal fin proximal radial ZFA:0000947 Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials. GOC:cvs ORCiD:0000-0002-2244-7917 dorsal fin proximal radials Hindbrain segment or neuromere posterior to rhombomere 2. TAO:0000948 r3 zebrafish_anatomy ZFA:0000948 rhombomere 3 ZFA:0000948 Hindbrain segment or neuromere posterior to rhombomere 2. ZFIN:ZDB-PUB-961014-576 Hindbrain segment or neuromere posterior to rhombomere 6. TAO:0000949 r7 zebrafish_anatomy ZFA:0000949 rhombomere 7 ZFA:0000949 Hindbrain segment or neuromere posterior to rhombomere 6. ZFIN:ZDB-PUB-961014-576 Roof plate that is part of rhombomere 3. TAO:0000950 zebrafish_anatomy ZFA:0000950 roof plate rhombomere 3 ZFA:0000950 Roof plate that is part of rhombomere 3. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Roof plate that is part of rhombomere 7. TAO:0000951 zebrafish_anatomy ZFA:0000951 roof plate rhombomere 7 ZFA:0000951 Roof plate that is part of rhombomere 7. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Ventromedial region of somite 1 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000952 zebrafish_anatomy ZFA:0000952 sclerotome somite 1 ZFA:0000952 Ventromedial region of somite 1 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 12 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000953 zebrafish_anatomy ZFA:0000953 sclerotome somite 12 ZFA:0000953 Ventromedial region of somite 12 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 15 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000954 zebrafish_anatomy ZFA:0000954 sclerotome somite 15 ZFA:0000954 Ventromedial region of somite 15 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 18 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000955 zebrafish_anatomy ZFA:0000955 sclerotome somite 18 ZFA:0000955 Ventromedial region of somite 18 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 20 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000956 zebrafish_anatomy ZFA:0000956 sclerotome somite 20 ZFA:0000956 Ventromedial region of somite 20 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 The hypaxial region of somite 19 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000957 zebrafish_anatomy ZFA:0000957 hypaxial region somite 19 ZFA:0000957 The hypaxial region of somite 19 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Ventromedial region of somite 23 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000958 zebrafish_anatomy ZFA:0000958 sclerotome somite 23 ZFA:0000958 Ventromedial region of somite 23 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 26 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000959 zebrafish_anatomy ZFA:0000959 sclerotome somite 26 ZFA:0000959 Ventromedial region of somite 26 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 29 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000960 zebrafish_anatomy ZFA:0000960 sclerotome somite 29 ZFA:0000960 Ventromedial region of somite 29 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 4 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000961 zebrafish_anatomy ZFA:0000961 sclerotome somite 4 ZFA:0000961 Ventromedial region of somite 4 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 7 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0000962 zebrafish_anatomy ZFA:0000962 sclerotome somite 7 ZFA:0000962 Ventromedial region of somite 7 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 1. TAO:0000963 slow muscle cells somite 1 zebrafish_anatomy ZFA:0000963 slow muscle cell somite 1 ZFA:0000963 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 1. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961219-12 slow muscle cells somite 1 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 12. TAO:0000964 slow muscle cells somite 12 zebrafish_anatomy ZFA:0000964 slow muscle cell somite 12 ZFA:0000964 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 12. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 12 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 15. TAO:0000965 slow muscle cells somite 15 zebrafish_anatomy ZFA:0000965 slow muscle cell somite 15 ZFA:0000965 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 15. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 15 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 18. TAO:0000966 slow muscle cells somite 18 zebrafish_anatomy ZFA:0000966 slow muscle cell somite 18 ZFA:0000966 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 18. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 18 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 20. TAO:0000967 slow muscle cells somite 20 zebrafish_anatomy ZFA:0000967 slow muscle cell somite 20 ZFA:0000967 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 20. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 20 The hypaxial region of somite 21 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000968 zebrafish_anatomy ZFA:0000968 hypaxial region somite 21 ZFA:0000968 The hypaxial region of somite 21 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 23. TAO:0000969 slow muscle cells somite 23 zebrafish_anatomy ZFA:0000969 slow muscle cell somite 23 ZFA:0000969 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 23. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 23 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 26. TAO:0000970 slow muscle cells somite 26 zebrafish_anatomy ZFA:0000970 slow muscle cell somite 26 ZFA:0000970 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 26. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 26 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 29. TAO:0000971 slow muscle cells somite 29 zebrafish_anatomy ZFA:0000971 slow muscle cell somite 29 ZFA:0000971 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 29. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 29 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 4. TAO:0000972 slow muscle cells somite 4 zebrafish_anatomy ZFA:0000972 slow muscle cell somite 4 ZFA:0000972 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 4. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 4 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 7. TAO:0000973 slow muscle cells somite 7 zebrafish_anatomy ZFA:0000973 slow muscle cell somite 7 ZFA:0000973 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 7. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 7 Undifferentiated mesodermal component of early trunk segment 10 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000974 zebrafish_anatomy ZFA:0000974 somite 10 ZFA:0000974 Undifferentiated mesodermal component of early trunk segment 10 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 13 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000975 zebrafish_anatomy ZFA:0000975 somite 13 ZFA:0000975 Undifferentiated mesodermal component of early trunk segment 13 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 16 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000976 zebrafish_anatomy ZFA:0000976 somite 16 ZFA:0000976 Undifferentiated mesodermal component of early trunk segment 16 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk or tail segment 19 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000977 zebrafish_anatomy ZFA:0000977 somite 19 ZFA:0000977 Undifferentiated mesodermal component of early trunk or tail segment 19 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 22 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000978 zebrafish_anatomy ZFA:0000978 somite 22 ZFA:0000978 Undifferentiated mesodermal component of early tail segment 22 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 24 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000979 zebrafish_anatomy ZFA:0000979 hypaxial region somite 24 ZFA:0000979 The hypaxial region of somite 24 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 25 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000980 zebrafish_anatomy ZFA:0000980 somite 25 ZFA:0000980 Undifferentiated mesodermal component of early tail segment 25 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early tail segment 29 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000981 zebrafish_anatomy ZFA:0000981 somite 29 ZFA:0000981 Undifferentiated mesodermal component of early tail segment 29 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 6 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000982 zebrafish_anatomy ZFA:0000982 somite 6 ZFA:0000982 Undifferentiated mesodermal component of early trunk segment 6 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Undifferentiated mesodermal component of early trunk segment 9 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. TAO:0000983 zebrafish_anatomy ZFA:0000983 somite 9 ZFA:0000983 Undifferentiated mesodermal component of early trunk segment 9 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 TAO:0000984 zebrafish_anatomy ZFA:0000984 superior reticular formation tegmentum ZFA:0000984 TAO:0000985 zebrafish_anatomy ZFA:0000985 ventral rhombencephalic commissure medulla oblongata ZFA:0000985 The hypaxial region of somite 27 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000986 zebrafish_anatomy ZFA:0000986 hypaxial region somite 27 ZFA:0000986 The hypaxial region of somite 27 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 3 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000987 zebrafish_anatomy ZFA:0000987 hypaxial region somite 3 ZFA:0000987 The hypaxial region of somite 3 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 5 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000988 zebrafish_anatomy ZFA:0000988 hypaxial region somite 5 ZFA:0000988 The hypaxial region of somite 5 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The hypaxial region of somite 8 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. TAO:0000989 zebrafish_anatomy ZFA:0000989 hypaxial region somite 8 ZFA:0000989 The hypaxial region of somite 8 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 TAO:0000990 zebrafish_anatomy ZFA:0000990 intermediate mesenchyme ZFA:0000990 The epaxial region of somite 10 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0000991 zebrafish_anatomy ZFA:0000991 epaxial region somite 10 ZFA:0000991 The epaxial region of somite 10 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 TAO:0000992 zebrafish_anatomy ZFA:0000992 lateral migration pathway mesenchyme ZFA:0000992 Portion of tissue located at either side of the neural rod. TAO:0000993 zebrafish_anatomy ZFA:0000993 lateral wall neural rod ZFA:0000993 Portion of tissue located at either side of the neural rod. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 3. TAO:0000994 zebrafish_anatomy ZFA:0000994 lateral wall rhombomere 3 ZFA:0000994 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 3. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 6. TAO:0000995 zebrafish_anatomy ZFA:0000995 lateral wall rhombomere 6 ZFA:0000995 Multi-tissue structure forming the sides of the lumen of the neural tube in rhombomere 6. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure forming the sides of the lumen of the spinal cord. TAO:0000996 zebrafish_anatomy ZFA:0000996 lateral wall spinal cord ZFA:0000996 Multi-tissue structure forming the sides of the lumen of the spinal cord. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Sensory trigeminal nucleus located at the end of the medulla oblongata. TAO:0000997 medial funicular nucleus trigeminal nuclei zebrafish_anatomy ZFA:0000997 medial funicular nucleus trigeminal nucleus ZFA:0000997 Sensory trigeminal nucleus located at the end of the medulla oblongata. ZFIN:ZDB-PUB-961014-1280 medial funicular nucleus trigeminal nuclei TAO:0000998 zebrafish_anatomy ZFA:0000998 mesenchyme derived from head mesoderm ZFA:0000998 TAO:0000999 zebrafish_anatomy ZFA:0000999 mesenchyme derived from trunk neural crest ZFA:0000999 Mesenchyme that is part of the pectoral fin. TAO:0001000 mesenchyme pectoral fins zebrafish_anatomy ZFA:0001000 mesenchyme pectoral fin ZFA:0001000 Mesenchyme that is part of the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 mesenchyme pectoral fins The epaxial region of somite 13 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0001001 zebrafish_anatomy ZFA:0001001 epaxial region somite 13 ZFA:0001001 The epaxial region of somite 13 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 TAO:0001002 zebrafish_anatomy ZFA:0001002 Consider post-composing ZFA:0009052 motor neuron with GO:0030424 axon peripheral motor axons true ZFA:0001002 Muscle pioneer cell part of somite 12. TAO:0001003 muscle pioneers somite 12 zebrafish_anatomy ZFA:0001003 muscle pioneer somite 12 ZFA:0001003 Muscle pioneer cell part of somite 12. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 12 Muscle pioneer cell part of somite 15. TAO:0001004 muscle pioneers somite 15 zebrafish_anatomy ZFA:0001004 muscle pioneer somite 15 ZFA:0001004 Muscle pioneer cell part of somite 15. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 15 Muscle pioneer cell part of somite 18. TAO:0001005 muscle pioneers somite 18 zebrafish_anatomy ZFA:0001005 muscle pioneer somite 18 ZFA:0001005 Muscle pioneer cell part of somite 18. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 18 Muscle pioneer cell part of somite 21. TAO:0001006 muscle pioneers somite 21 zebrafish_anatomy ZFA:0001006 muscle pioneer somite 21 ZFA:0001006 Muscle pioneer cell part of somite 21. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 21 Muscle pioneer cell part of somite 24. TAO:0001007 muscle pioneers somite 24 zebrafish_anatomy ZFA:0001007 muscle pioneer somite 24 ZFA:0001007 Muscle pioneer cell part of somite 24. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 24 Muscle pioneer cell part of somite 27. TAO:0001008 muscle pioneers somite 27 zebrafish_anatomy ZFA:0001008 muscle pioneer somite 27 ZFA:0001008 Muscle pioneer cell part of somite 27. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 27 Muscle pioneer cell part of somite 3. TAO:0001009 muscle pioneers somite 3 zebrafish_anatomy ZFA:0001009 muscle pioneer somite 3 ZFA:0001009 Muscle pioneer cell part of somite 3. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 3 Muscle pioneer cell part of somite 5. TAO:0001010 muscle pioneers somite 5 zebrafish_anatomy ZFA:0001010 muscle pioneer somite 5 ZFA:0001010 Muscle pioneer cell part of somite 5. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 5 Muscle pioneer cell part of somite 8. TAO:0001011 muscle pioneers somite 8 zebrafish_anatomy ZFA:0001011 muscle pioneer somite 8 ZFA:0001011 Muscle pioneer cell part of somite 8. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 muscle pioneers somite 8 The epaxial region of somite 16 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0001012 zebrafish_anatomy ZFA:0001012 epaxial region somite 16 ZFA:0001012 The epaxial region of somite 16 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 10 that gives rise to body wall muscle masses. TAO:0001013 zebrafish_anatomy ZFA:0001013 myotome somite 10 ZFA:0001013 Portion of somite 10 that gives rise to body wall muscle masses. ZFIN:ZDB-PUB-961014-576 Portion of somite 13 that gives rise to body wall muscle masses. TAO:0001014 zebrafish_anatomy ZFA:0001014 myotome somite 13 ZFA:0001014 Portion of somite 13 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 17 that gives rise to body wall muscle masses. TAO:0001015 zebrafish_anatomy ZFA:0001015 myotome somite 17 ZFA:0001015 Portion of somite 17 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 2 that gives rise to body wall muscle masses. TAO:0001016 zebrafish_anatomy ZFA:0001016 myotome somite 2 ZFA:0001016 Portion of somite 2 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 22 that gives rise to body wall muscle masses. TAO:0001017 zebrafish_anatomy ZFA:0001017 myotome somite 22 ZFA:0001017 Portion of somite 22 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 25 that gives rise to body wall muscle masses. TAO:0001018 zebrafish_anatomy ZFA:0001018 myotome somite 25 ZFA:0001018 Portion of somite 25 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 28 that gives rise to body wall muscle masses. TAO:0001019 zebrafish_anatomy ZFA:0001019 myotome somite 28 ZFA:0001019 Portion of somite 28 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 30 that gives rise to body wall muscle masses. TAO:0001020 zebrafish_anatomy ZFA:0001020 myotome somite 30 ZFA:0001020 Portion of somite 30 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 6 that gives rise to body wall muscle masses. TAO:0001021 zebrafish_anatomy ZFA:0001021 myotome somite 6 ZFA:0001021 Portion of somite 6 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Portion of somite 9 that gives rise to body wall muscle masses. TAO:0001022 zebrafish_anatomy ZFA:0001022 myotome somite 9 ZFA:0001022 Portion of somite 9 that gives rise to body wall muscle masses. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The epaxial region of somite 19 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum TAO:0001023 zebrafish_anatomy ZFA:0001023 epaxial region somite 19 ZFA:0001023 The epaxial region of somite 19 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Neural crest that is part of the trunk. TAO:0001024 zebrafish_anatomy ZFA:0001024 trunk neural crest ZFA:0001024 Neural crest that is part of the trunk. GOC:ymb ORCiD:0000-0002-9900-7880 Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0001025 neuromast occipital neuromasts occipital zebrafish_anatomy ZFA:0001025 occipital lateral line neuromast ZFA:0001025 Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts occipital Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0001026 neuromast supraorbital neuromasts supraorbital zebrafish_anatomy ZFA:0001026 supraorbital lateral line neuromast ZFA:0001026 Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 neuromasts supraorbital Space within the oral region. TAO:0001027 buccal cavity buccal chamber zebrafish_anatomy ZFA:0001027 oral cavity ZFA:0001027 Space within the oral region. GOC:mh ORCiD:0000-0001-9114-8737 The paired bony lateral extensions off the parhypural. TAO:0001028 hypurapophyses parhypurapophysis parhypurapophysis process zebrafish_anatomy ZFA:0001028 hypurapophysis ZFA:0001028 The paired bony lateral extensions off the parhypural. ZFIN:ZDB-PUB-011008-1 hypurapophyses Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf. TAO:0001029 ILM inner limiting membranes zebrafish_anatomy ZFA:0001029 inner limiting membrane ZFA:0001029 Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-071023-7 ZFIN:ZDB-PUB-120529-3 inner limiting membranes The epaxial region of somite 21 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0001030 zebrafish_anatomy ZFA:0001030 epaxial region somite 21 ZFA:0001030 The epaxial region of somite 21 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Anteriormost hindbrain segment or neuromere. TAO:0001031 r1 zebrafish_anatomy ZFA:0001031 rhombomere 1 ZFA:0001031 Anteriormost hindbrain segment or neuromere. ZFIN:ZDB-PUB-961014-576 Hindbrain segment or neuromere posterior to rhombomere 3. TAO:0001032 r4 zebrafish_anatomy ZFA:0001032 rhombomere 4 ZFA:0001032 Hindbrain segment or neuromere posterior to rhombomere 3. ZFIN:ZDB-PUB-961014-576 Roof plate that is part of rhombomere 1. TAO:0001033 zebrafish_anatomy ZFA:0001033 roof plate rhombomere 1 ZFA:0001033 Roof plate that is part of rhombomere 1. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Roof plate that is part of rhombomere 4. TAO:0001034 zebrafish_anatomy ZFA:0001034 roof plate rhombomere 4 ZFA:0001034 Roof plate that is part of rhombomere 4. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Roof plate that is part of rhombomere 8. TAO:0001035 zebrafish_anatomy ZFA:0001035 roof plate rhombomere 8 ZFA:0001035 Roof plate that is part of rhombomere 8. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Ventromedial region of somite 10 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001036 zebrafish_anatomy ZFA:0001036 sclerotome somite 10 ZFA:0001036 Ventromedial region of somite 10 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 13 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001037 zebrafish_anatomy ZFA:0001037 sclerotome somite 13 ZFA:0001037 Ventromedial region of somite 13 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 16 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001038 zebrafish_anatomy ZFA:0001038 sclerotome somite 16 ZFA:0001038 Ventromedial region of somite 16 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 19 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001039 zebrafish_anatomy ZFA:0001039 sclerotome somite 19 ZFA:0001039 Ventromedial region of somite 19 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 The epaxial region of somite 24 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. TAO:0001040 zebrafish_anatomy ZFA:0001040 epaxial region somite 24 ZFA:0001040 The epaxial region of somite 24 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Ventromedial region of somite 21 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001041 zebrafish_anatomy ZFA:0001041 sclerotome somite 21 ZFA:0001041 Ventromedial region of somite 21 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 24 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001042 zebrafish_anatomy ZFA:0001042 sclerotome somite 24 ZFA:0001042 Ventromedial region of somite 24 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 27 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001043 zebrafish_anatomy ZFA:0001043 sclerotome somite 27 ZFA:0001043 Ventromedial region of somite 27 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 3 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001044 zebrafish_anatomy ZFA:0001044 sclerotome somite 3 ZFA:0001044 Ventromedial region of somite 3 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 5 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001045 zebrafish_anatomy ZFA:0001045 sclerotome somite 5 ZFA:0001045 Ventromedial region of somite 5 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 Ventromedial region of somite 8 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. TAO:0001046 zebrafish_anatomy ZFA:0001046 sclerotome somite 8 ZFA:0001046 Ventromedial region of somite 8 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 ZFIN:ZDB-PUB-970213-3 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 10. TAO:0001047 slow muscle cells somite 10 zebrafish_anatomy ZFA:0001047 slow muscle cell somite 10 ZFA:0001047 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 10. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 10 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 13. TAO:0001048 slow muscle cells somite 13 zebrafish_anatomy ZFA:0001048 slow muscle cell somite 13 ZFA:0001048 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 13. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 13 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 16. TAO:0001049 slow muscle cells somite 16 zebrafish_anatomy ZFA:0001049 slow muscle cell somite 16 ZFA:0001049 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 16. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 16 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 19. TAO:0001050 slow muscle cells somite 19 zebrafish_anatomy ZFA:0001050 slow muscle cell somite 19 ZFA:0001050 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 19. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 slow muscle cells somite 19 Branch of the internal carotid artery that extends caudally along the sides of the midbrain and eventually drains into the basilar artery via the posterior communicating artery. TAO:0001051 CaDI posterior cerebral carotid artery posterior rami of the cerebral carotid artery zebrafish_anatomy ZFA:0001051 caudal division of the internal carotid artery ZFA:0001051 Branch of the internal carotid artery that extends caudally along the sides of the midbrain and eventually drains into the basilar artery via the posterior communicating artery. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140605-9 The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. TAO:0001052 PHBC medial head vein zebrafish_anatomy ZFA:0001052 primordial hindbrain channel ZFA:0001052 The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Artery that originates as rostral extensions of the paired lateral dorsal aorta. The primitive internal carotid artery splits to form caudal and cranial divisions. The primitive internal carotid artery is paired. TAO:0001053 PICA zebrafish_anatomy ZFA:0001053 primitive internal carotid artery ZFA:0001053 Artery that originates as rostral extensions of the paired lateral dorsal aorta. The primitive internal carotid artery splits to form caudal and cranial divisions. The primitive internal carotid artery is paired. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is called the radix of the aorta. TAO:0001054 LDA zebrafish_anatomy ZFA:0001054 lateral dorsal aorta ZFA:0001054 Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is called the radix of the aorta. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 The juncture where the pronephric ducts empty into the cloaca. TAO:0001055 pronephric duct openings zebrafish_anatomy urogenital opening ZFA:0001055 pronephric duct opening ZFA:0001055 The juncture where the pronephric ducts empty into the cloaca. GOC:cvs ORCiD:0000-0002-2244-7917 pronephric duct openings urogenital opening ZFIN:ZDB-PUB-060508-11 Muscle that develops from somite and gives rise to body wall muscle masses. TAO:0001056 myomeres zebrafish_anatomy ZFA:0001056 myotome ZFA:0001056 Muscle that develops from somite and gives rise to body wall muscle masses. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-576 myomeres ZFIN:ZDB-PUB-961014-576 Veins that connect the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. They form from primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel. TAO:0001057 ISV zebrafish_anatomy ZFA:0001057 intersegmental vein ZFA:0001057 Veins that connect the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. They form from primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-030908-4 Fin that is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. TAO:0001058 tail tail fin zebrafish_anatomy ZFA:0001058 caudal fin ZFA:0001058 Fin that is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. ZFIN:ZDB-PUB-011008-1 Caudal branch of the internal carotid artery that gives rise to the branches that supply the diencephalon and telencephalon. TAO:0001059 CrDI anterior cerebral carotid artery anterior rami of the cerebral carotid artery rostral division of the internal carotid artery zebrafish_anatomy ZFA:0001059 cranial division of the internal carotid artery ZFA:0001059 Caudal branch of the internal carotid artery that gives rise to the branches that supply the diencephalon and telencephalon. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140605-9 Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus. TAO:0001060 zebrafish_anatomy arcualia ZFA:0001060 basidorsal ZFA:0001060 Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus. GOC:mh ORCiD:0000-0001-9114-8737 Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. They form from the primary sprouts from the dorsal aorta. TAO:0001061 intersegmental arteries zebrafish_anatomy ZFA:0001061 intersegmental artery ZFA:0001061 Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. They form from the primary sprouts from the dorsal aorta. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-030908-4 intersegmental arteries Artery that branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary. TAO:0001062 PMsA zebrafish_anatomy ZFA:0001062 primitive mesencephalic artery ZFA:0001062 Artery that branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0001063 zebrafish_anatomy ZFA:0001063 posterior caudal vein ZFA:0001063 A segment of the developing hindbrain. TAO:0001064 hindbrain segment rhombomeres zebrafish_anatomy neuromere ZFA:0001064 rhombomere ZFA:0001064 A segment of the developing hindbrain. ZFIN:ZDB-PUB-961014-576 rhombomeres TAO:0001065 zebrafish_anatomy ZFA:0001065 lateral mesoderm ZFA:0001065 A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone. TAO:0001066 dorsal arcocentrum zebrafish_anatomy ZFA:0001066 neural arch ZFA:0001066 A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone. GOC:mh ORCiD:0000-0001-9114-8737 Vein that branches from the primordial hindbrain channel (PHBC) at 1.3 dpf. The primitive prosencephalic artery drains into the anterior cerebral vein (ACeV) as do the prosencephalic artery and the nasal vein. TAO:0001067 ACeV rostral cerebral vein zebrafish_anatomy ZFA:0001067 anterior cerebral vein ZFA:0001067 Vein that branches from the primordial hindbrain channel (PHBC) at 1.3 dpf. The primitive prosencephalic artery drains into the anterior cerebral vein (ACeV) as do the prosencephalic artery and the nasal vein. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Artery in the midbrain that develops from the proximal portion of the primitive mesencephalic artery. TAO:0001068 MsA zebrafish_anatomy ZFA:0001068 mesencephalic artery ZFA:0001068 Artery in the midbrain that develops from the proximal portion of the primitive mesencephalic artery. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Region of the median fin fold that develops into the anal and caudal fin. TAO:0001069 anal fin fold tail fin fold ventral fin zebrafish_anatomy ZFA:0001069 ventral fin fold ZFA:0001069 Region of the median fin fold that develops into the anal and caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Presumptive structure part of the intermediate mesoderm, that is fated to become pronephric mesoderm. TAO:0001070 nephron primordium zebrafish_anatomy ZFA:0001070 presumptive pronephric mesoderm ZFA:0001070 Presumptive structure part of the intermediate mesoderm, that is fated to become pronephric mesoderm. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue that is the inner layer of the optic cup and will become the neural retina. TAO:0001071 inner layer optic cup presumptive retinas zebrafish_anatomy ZFA:0001071 presumptive neural retina ZFA:0001071 Portion of tissue that is the inner layer of the optic cup and will become the neural retina. GOC:mh ORCiD:0000-0001-9114-8737 presumptive retinas Portion of tissue formed form thyroid follicle cells that forms along the midline in pharyngeal mesenchyme. The follicles are not encapsulated by connective tissue. TAO:0001072 thyroid follicles zebrafish_anatomy ZFA:0001072 thyroid follicle ZFA:0001072 Portion of tissue formed form thyroid follicle cells that forms along the midline in pharyngeal mesenchyme. The follicles are not encapsulated by connective tissue. ZFIN:ZDB-PUB-060517-11 thyroid follicles Vasculature that runs along the rostral-caudal axis of the fish. TAO:0001073 zebrafish_anatomy ZFA:0001073 axial vasculature ZFA:0001073 Vasculature that runs along the rostral-caudal axis of the fish. GOC:cvs ORCiD:0000-0002-2244-7917 Pear or onion-shaped intraepithelial sensory endorgans. They sit on a small dermal papilla and consist of modified epithelial cells of different types. The taste buds are located in the mouth, in the oropharyngeal cavity, on the head and on the barbels. They are innervated by either the facial (VII), the glossopharyngeal (IX), or the vagal (X) cranial nerve. TAO:0001074 taste buds zebrafish_anatomy ZFA:0001074 Taste buds are made up of vertically oriented, elongate cells form the sensory epithelium of the organ: dark cells with many small microvilli, and light cells with one large microvillus as an apical ending. Between the dark and light cells and the basal lamina, the basal cells stretch horizontally. taste bud ZFA:0001074 Pear or onion-shaped intraepithelial sensory endorgans. They sit on a small dermal papilla and consist of modified epithelial cells of different types. The taste buds are located in the mouth, in the oropharyngeal cavity, on the head and on the barbels. They are innervated by either the facial (VII), the glossopharyngeal (IX), or the vagal (X) cranial nerve. ZFIN:ZDB-PUB-020403-3 taste buds The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn. TAO:0001075 choroidal fissures zebrafish_anatomy ZFA:0001075 choroidal fissure ZFA:0001075 The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn. GOC:cvs ORCiD:0000-0002-2244-7917 choroidal fissures The bulbous anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. TAO:0001076 pseudogaster anterior intestine zebrafish_anatomy foregut ZFA:0001076 intestinal bulb ZFA:0001076 The bulbous anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. ZFIN:ZDB-PUB-050120-6 pseudogaster ISBN:3510650670 A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. TAO:0001077 thymic rudiment zebrafish_anatomy ZFA:0001077 thymus primordium ZFA:0001077 A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. ZFIN:ZDB-PUB-990414-60 Paired organ where maturation of T-lymphocytes occurs. The adult thymus located on the dorsomedial aspect of the branchial cavity above the third pharyngeal cartilage. The thymus undergoes a period of rapid growth beginning at about the third week and continuing for several more weeks. Accompanying this growth is a dramatic change in the shape of the thymus. It is ovoid initially and then starts to grow dorsally along the skull, forming a characteristic protrusion. During this growth period the adult pattern of rag1-positive cortex and rag1-negative medulla becomes established. The protrusions diminish with age and the thymus gradually shrinks; at two years, the thymus is again confined to the pharynx with minimal if any protrusion. TAO:0001078 zebrafish_anatomy ZFA:0001078 thymus ZFA:0001078 Paired organ where maturation of T-lymphocytes occurs. The adult thymus located on the dorsomedial aspect of the branchial cavity above the third pharyngeal cartilage. The thymus undergoes a period of rapid growth beginning at about the third week and continuing for several more weeks. Accompanying this growth is a dramatic change in the shape of the thymus. It is ovoid initially and then starts to grow dorsally along the skull, forming a characteristic protrusion. During this growth period the adult pattern of rag1-positive cortex and rag1-negative medulla becomes established. The protrusions diminish with age and the thymus gradually shrinks; at two years, the thymus is again confined to the pharynx with minimal if any protrusion. ZFIN:ZDB-PUB-040216-26 ZFIN:ZDB-PUB-110609-55 Is an interconnected tubular multi-tissue structure that contains blood that is actively transported around the organism. TAO:0001079 zebrafish_anatomy blood vessel ZFA:0001079 blood vasculature ZFA:0001079 Is an interconnected tubular multi-tissue structure that contains blood that is actively transported around the organism. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of somite that gives rise to skeletal elements. TAO:0001080 sclerotomes zebrafish_anatomy ZFA:0001080 sclerotome ZFA:0001080 Portion of somite that gives rise to skeletal elements. GOC:mh ORCiD:0000-0001-9114-8737 sclerotomes Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle. TAO:0001081 thyroid primordia zebrafish_anatomy ZFA:0001081 thyroid primordium ZFA:0001081 Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 thyroid primordia Portion of tissue that is posterior to the developing notochord during tail bud extension. TAO:0001082 zebrafish_anatomy ZFA:0001082 chordo neural hinge ZFA:0001082 Portion of tissue that is posterior to the developing notochord during tail bud extension. ZFIN:ZDB-PUB-970723-15 Proliferative region that is part of the ventricular system. The cells directly face the ventricle. TAO:0001083 ventricular zones zebrafish_anatomy ZFA:0001083 ventricular zone ZFA:0001083 Proliferative region that is part of the ventricular system. The cells directly face the ventricle. GOC:mh ORCiD:0000-0001-9114-8737 ventricular zones TAO:0001084 epaxial myotome regions zebrafish_anatomy ZFA:0001084 epaxial myotome region ZFA:0001084 epaxial myotome regions TAO:0001085 hypaxial muscle zebrafish_anatomy ZFA:0001085 hypaxial myotome region ZFA:0001085 Cells that develop from adaxial cells that express engrailed and do not migrate completely to the lateral surface of the myotome, and instead extend from the notochord to the lateral surface of the somite, at the level of the future horizontal myoseptum. TAO:0001086 muscle pioneers non migratory adaxial cells zebrafish_anatomy ZFA:0001086 muscle pioneer ZFA:0001086 Cells that develop from adaxial cells that express engrailed and do not migrate completely to the lateral surface of the myotome, and instead extend from the notochord to the lateral surface of the somite, at the level of the future horizontal myoseptum. ZFIN:ZDB-PUB-961219-12 muscle pioneers true ZFA:0001087 true ZFA:0001088 TAO:0001089 myocommata myosepta zebrafish_anatomy ZFA:0001089 myoseptum ZFA:0001089 myocommata ZFIN:ZDB-PUB-151106-17 myosepta true ZFA:0001090 true ZFA:0001091 true ZFA:0001092 Annotation with this anatomy term indicates that a structure was not specified by the author. TAO:0001093 zebrafish_anatomy ZFA:0001093 unspecified ZFA:0001093 Annotation with this anatomy term indicates that a structure was not specified by the author. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical structure that is an individual member of Danio rerio. CARO:0000012 TAO:0001094 multi-cellular organism zebrafish_anatomy ZFA:0001094 whole organism ZFA:0001094 Anatomical structure that is an individual member of Danio rerio. GOC:mh ORCiD:0000-0001-9114-8737 Is an otic sensory epithelium that will develop into the mature macula. TAO:0001095 immature maculae immature sensory patch immature sensory patches zebrafish_anatomy ZFA:0001095 immature macula ZFA:0001095 Is an otic sensory epithelium that will develop into the mature macula. GOC:ymb ORCiD:0000-0002-9900-7880 immature maculae immature sensory patches Is an otic sensory epithelium that will develop into the mature anterior macula. TAO:0001096 immature anterior maculae zebrafish_anatomy ZFA:0001096 immature anterior macula ZFA:0001096 Is an otic sensory epithelium that will develop into the mature anterior macula. GOC:ymb ORCiD:0000-0002-9900-7880 immature anterior maculae Is an otic sensory epithelium that will develop into the mature posterior macula. TAO:0001097 immature posterior maculae zebrafish_anatomy ZFA:0001097 immature posterior macula ZFA:0001097 Is an otic sensory epithelium that will develop into the mature posterior macula. GOC:ymb ORCiD:0000-0002-9900-7880 immature posterior maculae A hair cell which is immature and located in the anterior macula. It will develop into a hair cell of the anterior macula. TAO:0001098 immature sensory hair cells anterior macula zebrafish_anatomy ZFA:0001098 immature hair cell anterior macula ZFA:0001098 A hair cell which is immature and located in the anterior macula. It will develop into a hair cell of the anterior macula. GOC:ymb ORCiD:0000-0002-9900-7880 immature sensory hair cells anterior macula A hair cell which is immature and located in the posterior macula. It will develop into a hair cell of the posterior macula. TAO:0001099 immature sensory hair cells posterior macula zebrafish_anatomy ZFA:0001099 immature hair cell posterior macula ZFA:0001099 A hair cell which is immature and located in the posterior macula. It will develop into a hair cell of the posterior macula. GOC:ymb ORCiD:0000-0002-9900-7880 immature sensory hair cells posterior macula A duct that carries bile from the liver to the intestine. TAO:0001100 zebrafish_anatomy ZFA:0001100 hepatic duct ZFA:0001100 A duct that carries bile from the liver to the intestine. GOC:cvs ORCiD:0000-0002-2244-7917 Sensory system that uses taste buds to sense chemical compounds. TAO:0001101 zebrafish_anatomy ZFA:0001101 gustatory system ZFA:0001101 Sensory system that uses taste buds to sense chemical compounds. ZFIN:ZDB-PUB-961014-1280 true ZFA:0001102 true ZFA:0001103 TAO:0001104 zebrafish_anatomy ZFA:0001104 pharyngeal endoderm ZFA:0001104 Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells. TAO:0001105 embryonic structures zebrafish_anatomy ZFA:0001105 embryonic structure ZFA:0001105 Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells. GOC:mh ORCiD:0000-0001-9114-8737 embryonic structures Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. TAO:0001106 pharyngeal pouches zebrafish_anatomy ZFA:0001106 pharyngeal pouch ZFA:0001106 Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. ZFIN:ZDB-PUB-041029-8 pharyngeal pouches Portion of tissue that develops into a gill. TAO:0001107 internal gill buds zebrafish_anatomy ZFA:0001107 internal gill bud ZFA:0001107 Portion of tissue that develops into a gill. ZFIN:ZDB-PUB-041216-7 internal gill buds Telencephalic white matter (commissure) which connects the two cerebral hemispheres across the midline. TAO:0001108 commissura anterior commissura rostral rostral commissure zebrafish_anatomy ZFA:0001108 anterior commissure ZFA:0001108 Telencephalic white matter (commissure) which connects the two cerebral hemispheres across the midline. GOC:mh ORCiD:0000-0001-9114-8737 A female germ cell that has entered meiosis. ZFA:0009008 CL:0000023 TAO:0001109 zebrafish_anatomy egg ZFA:0001109 I think the term we really want is CL:0000023. oocyte ZFA:0001109 A female germ cell that has entered meiosis. GOC:tfm ISBN:0721662544 Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg. TAO:0001110 egg follicle zebrafish_anatomy ZFA:0001110 ovarian follicle ZFA:0001110 Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg. ZFIN:ZDB-PUB-961014-1020 Acellular anatomic structure that is a layer that separates the developing oocyte and the granulosa cell layer. TAO:0001111 vitelline envelope zebrafish_anatomy ZFA:0001111 zona radiata ZFA:0001111 Acellular anatomic structure that is a layer that separates the developing oocyte and the granulosa cell layer. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue part of the ovarian follicle containing a single layer of granulosa cells that surround the developing oocyte. TAO:0001112 granulosa cell layers zebrafish_anatomy ZFA:0001112 granulosa cell layer ZFA:0001112 Portion of tissue part of the ovarian follicle containing a single layer of granulosa cells that surround the developing oocyte. GOC:mh ORCiD:0000-0001-9114-8737 granulosa cell layers Multi-tissue structure of the ovarian follicle, composed of stromal cells and capillaries that covers oocytes. The thecal layer is external to the granulosa cell layer. TAO:0001113 thecal cell layers zebrafish_anatomy ZFA:0001113 thecal cell layer ZFA:0001113 Multi-tissue structure of the ovarian follicle, composed of stromal cells and capillaries that covers oocytes. The thecal layer is external to the granulosa cell layer. GOC:mh ORCiD:0000-0001-9114-8737 thecal cell layers Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions. TAO:0001114 zebrafish_anatomy ZFA:0001114 head ZFA:0001114 Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions. GOC:mh ORCiD:0000-0001-9114-8737 Organism subdivision which is the part of the body posterior to the head and anterior to the post-vent region. TAO:0001115 zebrafish_anatomy ZFA:0001115 trunk ZFA:0001115 Organism subdivision which is the part of the body posterior to the head and anterior to the post-vent region. GOC:mh ORCiD:0000-0001-9114-8737 Portion of embryonic tissue determined by fate mapping to become a structure. TAO:0001116 presumptive structures zebrafish_anatomy ZFA:0001116 presumptive structure ZFA:0001116 Portion of embryonic tissue determined by fate mapping to become a structure. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 presumptive structures Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins. TAO:0001117 zebrafish_anatomy tail ZFA:0001117 post-vent region ZFA:0001117 Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins. GOC:mh ORCiD:0000-0001-9114-8737 A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. TAO:0001118 UGP anal papilla anal papillae genital papilla urogenital papillae zebrafish_anatomy ZFA:0001118 urogenital papilla ZFA:0001118 A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. ZFIN:ZDB-PUB-040526-4 urogenital papillae A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. TAO:0001119 zebrafish_anatomy ZFA:0001119 dermis ZFA:0001119 A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. ZFIN:ZDB-PUB-040726-12 TAO:0001120 neural ectoderm neurectoderm zebrafish_anatomy ZFA:0001120 neuroectoderm ZFA:0001120 Presumptive structure fated to become the shield. Defined by fate mapping. TAO:0001121 zebrafish_anatomy ZFA:0001121 presumptive shield ZFA:0001121 Presumptive structure fated to become the shield. Defined by fate mapping. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue that consists of a layer of cells that form during embryogenesis that will give rise to all structures of the organism. TAO:0001122 embryonic germ layers zebrafish_anatomy ZFA:0001122 primary germ layer ZFA:0001122 Portion of tissue that consists of a layer of cells that form during embryogenesis that will give rise to all structures of the organism. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. TAO:0001123 median fin skeleton unpaired fin skeleton zebrafish_anatomy ZFA:0001123 axial fin skeleton ZFA:0001123 Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. TAO:curator Median fin skeleton located on the dorsal surface of the organism. TAO:0001124 zebrafish_anatomy ZFA:0001124 dorsal fin skeleton ZFA:0001124 Median fin skeleton located on the dorsal surface of the organism. TAO:curator The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. TAO:0001125 Nieuwkoop center zebrafish_anatomy ZFA:0001125 organizer inducing center ZFA:0001125 The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. ZFIN:ZDB-PUB-991102-7 The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. TAO:0001126 NEM noninvoluting endocytic marginal cells zebrafish_anatomy ZFA:0001126 noninvoluting endocytic marginal cell cluster ZFA:0001126 The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. ZFIN:ZDB-PUB-970107-2 noninvoluting endocytic marginal cells Sensory system responsible for the perception of light. TAO:0001127 zebrafish_anatomy ZFA:0001127 visual system ZFA:0001127 Sensory system responsible for the perception of light. GOC:mh ORCiD:0000-0001-9114-8737 Most anterior pharyngeal pouch. TAO:0001128 pharyngeal pouches 1 zebrafish_anatomy ZFA:0001128 pharyngeal pouch 1 ZFA:0001128 Most anterior pharyngeal pouch. GOC:cvs ORCID:0000-0002-2244-7917 pharyngeal pouches 1 TAO:0001129 zebrafish_anatomy ZFA:0001129 pharyngeal pouches 2-6 ZFA:0001129 TAO:0001130 pharyngeal pouches 2 zebrafish_anatomy ZFA:0001130 pharyngeal pouch 2 ZFA:0001130 pharyngeal pouches 2 TAO:0001131 pharyngeal pouches 3 zebrafish_anatomy ZFA:0001131 pharyngeal pouch 3 ZFA:0001131 pharyngeal pouches 3 TAO:0001132 pharyngeal pouches 6 zebrafish_anatomy ZFA:0001132 pharyngeal pouch 6 ZFA:0001132 pharyngeal pouches 6 TAO:0001133 pharyngeal pouches 5 zebrafish_anatomy ZFA:0001133 pharyngeal pouch 5 ZFA:0001133 pharyngeal pouches 5 TAO:0001134 pharyngeal pouches 4 zebrafish_anatomy ZFA:0001134 pharyngeal pouch 4 ZFA:0001134 pharyngeal pouches 4 Portion of tissue that is the cavity-containing primordium of the central nervous system, developing from the neural rod in the late segmentation period. TAO:0001135 zebrafish_anatomy presumptive central nervous system ZFA:0001135 neural tube ZFA:0001135 Portion of tissue that is the cavity-containing primordium of the central nervous system, developing from the neural rod in the late segmentation period. ZFIN:ZDB-PUB-961014-576 A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. TAO:0001136 subcutis zebrafish_anatomy ZFA:0001136 hypodermis ZFA:0001136 A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. ZFIN:ZDB-PUB-040726-12 Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone. TAO:0001137 ventral tooth rows zebrafish_anatomy ZFA:0001137 ventral tooth row ZFA:0001137 Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone. GOC:mh ORCiD:0000-0001-9114-8737 ventral tooth rows Sensory system responsible for the perception of spatial orientation and auditory stimuli. TAO:0001138 zebrafish_anatomy ZFA:0001138 vestibuloauditory system ZFA:0001138 Sensory system responsible for the perception of spatial orientation and auditory stimuli. GOC:ymb ORCiD:0000-0002-9900-7880 Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row. TAO:0001139 mediodorsal tooth rows zebrafish_anatomy ZFA:0001139 mediodorsal tooth row ZFA:0001139 Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row. GOC:mh ORCiD:0000-0001-9114-8737 mediodorsal tooth rows Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone. TAO:0001140 dorsal tooth rows zebrafish_anatomy ZFA:0001140 dorsal tooth row ZFA:0001140 Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone. GOC:mh ORCiD:0000-0001-9114-8737 dorsal tooth rows Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. TAO:0001141 zebrafish_anatomy ZFA:0001141 tooth 1V ZFA:0001141 Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. TAO:0001142 zebrafish_anatomy ZFA:0001142 tooth 5V ZFA:0001142 Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. TAO:0001143 zebrafish_anatomy ZFA:0001143 tooth 4V ZFA:0001143 Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. TAO:0001144 zebrafish_anatomy ZFA:0001144 tooth 2V ZFA:0001144 Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. TAO:0001145 zebrafish_anatomy ZFA:0001145 tooth 3V ZFA:0001145 Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row. TAO:0001146 zebrafish_anatomy ZFA:0001146 tooth 1MD ZFA:0001146 Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row. TAO:0001147 zebrafish_anatomy ZFA:0001147 tooth 2MD ZFA:0001147 Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row. TAO:0001148 zebrafish_anatomy ZFA:0001148 tooth 1D ZFA:0001148 Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Sensory system responsible for olfaction. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. TAO:0001149 zebrafish_anatomy ZFA:0001149 olfactory system ZFA:0001149 Sensory system responsible for olfaction. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row. TAO:0001150 zebrafish_anatomy ZFA:0001150 tooth 2D ZFA:0001150 Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row. TAO:0001151 zebrafish_anatomy ZFA:0001151 tooth 4MD ZFA:0001151 Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row. TAO:0001152 zebrafish_anatomy ZFA:0001152 tooth 3MD ZFA:0001152 Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row. GOC:mh ORCiD:0000-0001-9114-8737 Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium. TAO:0001153 dental primordium tooth germ zebrafish_anatomy ZFA:0001153 tooth placode ZFA:0001153 Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium. GOC:cvs ORCiD:0000-0002-2244-7917 Musculature part of the anal fin. TAO:0001154 zebrafish_anatomy ZFA:0001154 anal fin musculature ZFA:0001154 Musculature part of the anal fin. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Nervous system that is involved primarily with the internal regulation of the gustatory processes. In most vertebrates the enteric neurons form two layers of ganglionic plexuses located along the entire length of the gastrointestinal tract. TAO:0001155 zebrafish_anatomy ZFA:0001155 enteric nervous system ZFA:0001155 Nervous system that is involved primarily with the internal regulation of the gustatory processes. In most vertebrates the enteric neurons form two layers of ganglionic plexuses located along the entire length of the gastrointestinal tract. GOC:cvs GOC:ymb ISBN:0080923437 ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 http://www.macses.ucsf.edu/research/allostatic/parasym.php Dorsolateral placode that gives rise to the posterior lateral line. TAO:0001156 posterior lateral line placodes zebrafish_anatomy ZFA:0001156 posterior lateral line placode ZFA:0001156 Dorsolateral placode that gives rise to the posterior lateral line. GOC:ymb ORCiD:0000-0002-9900-7880 posterior lateral line placodes A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. TAO:0001157 posterior lateral line primordia zebrafish_anatomy ZFA:0001157 posterior lateral line primordium ZFA:0001157 A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. ZFIN:ZDB-PUB-010705-16 posterior lateral line primordia Anatomical system that produces, transports and secretes peptides. TAO:0001158 zebrafish_anatomy ZFA:0001158 endocrine system ZFA:0001158 Anatomical system that produces, transports and secretes peptides. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 System that provides protection against foreign and abnormal cells and removes cellular debris. TAO:0001159 zebrafish_anatomy ZFA:0001159 immune system ZFA:0001159 System that provides protection against foreign and abnormal cells and removes cellular debris. ISBN:0314472304 ZFS:0000044 zebrafish_anatomy ZFA:0001160 obsolete adult true ZFA:0001160 Paired fin that is located in the thoracic region of the body. TAO:0001161 forefin pectoral fins zebrafish_anatomy ZFA:0001161 pectoral fin ZFA:0001161 Paired fin that is located in the thoracic region of the body. TAO:curator pectoral fins Median fin that is located posterior to the anus. TAO:0001162 zebrafish_anatomy ZFA:0001162 anal fin ZFA:0001162 Median fin that is located posterior to the anus. TAO:curator Supraneural located between vertebra 6 and 7. TAO:0001163 zebrafish_anatomy ZFA:0001163 supraneural 7 ZFA:0001163 Supraneural located between vertebra 6 and 7. ZFIN:ZDB-PUB-031103-13 Supraneural located between vertebra 5 and 6. TAO:0001164 sn6 zebrafish_anatomy ZFA:0001164 supraneural 6 ZFA:0001164 Supraneural located between vertebra 5 and 6. ZFIN:ZDB-PUB-031103-13 Supraneural located between vertebra 4 and 5. TAO:0001165 sn5 zebrafish_anatomy ZFA:0001165 supraneural 5 ZFA:0001165 Supraneural located between vertebra 4 and 5. ZDB:ZDB-PUB-031103-13 Supraneural located between vertebra 8 and 9. TAO:0001166 zebrafish_anatomy ZFA:0001166 supraneural 9 ZFA:0001166 Supraneural located between vertebra 8 and 9. ZFIN:ZDB-PUB-031103-13 Vertebra that is posteriorly adjacent to the neurocranium. TAO:0001167 cervical vertebra 1 zebrafish_anatomy ZFA:0001167 vertebra 1 ZFA:0001167 Vertebra that is posteriorly adjacent to the neurocranium. TAO:curator Vertebra that is posteriorly adjacent to vertebra 1. TAO:0001168 cervical vertebra 2 zebrafish_anatomy ZFA:0001168 vertebra 2 ZFA:0001168 Vertebra that is posteriorly adjacent to vertebra 1. TAO:curator Vertebra that is posteriorly adjacent to vertebra 2. TAO:0001169 zebrafish_anatomy ZFA:0001169 vertebra 3 ZFA:0001169 Vertebra that is posteriorly adjacent to vertebra 2. TAO:curator Vertebra that is posteriorly adjacent to vertebra 3. TAO:0001170 zebrafish_anatomy ZFA:0001170 vertebra 4 ZFA:0001170 Vertebra that is posteriorly adjacent to vertebra 3. TAO:curator Thin, rod-shaped, anteroventrally directed membrane bone that develops as a separate outgrowth from the cartilage parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. It articulates with the tripus at the tripus-swim bladder connection. Often termed a fifth Weberian ossicle. TAO:0001171 zebrafish_anatomy ZFA:0001171 The os suspensorium is similar in shape to a rib, but the other ribs in Danio develop as separate ossifications that grow toward and articulate with the parapophyses. os suspensorium ZFA:0001171 Thin, rod-shaped, anteroventrally directed membrane bone that develops as a separate outgrowth from the cartilage parapophysis of the fourth vertebra; develops ventrally to curve around the anterior head of the swim bladder. It articulates with the tripus at the tripus-swim bladder connection. Often termed a fifth Weberian ossicle. ZFIN:ZDB-PUB-031103-13 Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Located dorsal to the neural tube. TAO:0001172 zebrafish_anatomy ZFA:0001172 roofing cartilage ZFA:0001172 Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Located dorsal to the neural tube. ZFIN:ZDB-PUB-031103-13 Median fin that is located on the dorsal surface of the fish. TAO:0001173 zebrafish_anatomy ZFA:0001173 dorsal fin ZFA:0001173 Median fin that is located on the dorsal surface of the fish. GOC:cvs ORCiD:0000-0002-2244-7917 Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. TAO:0001174 zebrafish_anatomy ZFA:0001174 pharyngeal epithelium ZFA:0001174 Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. ZFIN:ZDB-PUB-070426-1 Embryonic structure that is the dome of cytoplasm that segregates from the yolk toward the animal pole during and after the one cell-stage, and which undergoes cleavage. TAO:0001175 zebrafish_anatomy ZFA:0001175 blastodisc ZFA:0001175 Embryonic structure that is the dome of cytoplasm that segregates from the yolk toward the animal pole during and after the one cell-stage, and which undergoes cleavage. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Embryonic structure that is composed of the cellular part of the embryo, excluding the yolk cell, derived from the blastodisc by early morphogenesis; refers particularly to the time when the cell array is sheet-like, between 30%-epiboly and the end of gastrulation. TAO:0001176 zebrafish_anatomy ZFA:0001176 blastoderm ZFA:0001176 Embryonic structure that is composed of the cellular part of the embryo, excluding the yolk cell, derived from the blastodisc by early morphogenesis; refers particularly to the time when the cell array is sheet-like, between 30%-epiboly and the end of gastrulation. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 TAO:0001177 zebrafish_anatomy ZFA:0001177 roof plate spinal cord region ZFA:0001177 TAO:0001178 ventral ectoderm zebrafish_anatomy ZFA:0001178 non neural ectoderm ZFA:0001178 The outer layer of the epidermis. The living cells form single cell layer, the outer surface of which is ornamented with microridges. These outer epidermal cells are not renewed periodically, but are individually replaced when dead. TAO:0001179 zebrafish_anatomy ZFA:0001179 epidermal superficial stratum ZFA:0001179 The outer layer of the epidermis. The living cells form single cell layer, the outer surface of which is ornamented with microridges. These outer epidermal cells are not renewed periodically, but are individually replaced when dead. ZFIN:ZDB-PUB-040726-12 Lower layer of the epidermis. Composed of a single layer of cells. The major function of the basal stratum is to keep the epidermis attached to the underlying dermis by means of (hemidesmosomes attached to the basement membrane. TAO:0001180 basal epidermal layer zebrafish_anatomy ZFA:0001180 epidermal basal stratum ZFA:0001180 Lower layer of the epidermis. Composed of a single layer of cells. The major function of the basal stratum is to keep the epidermis attached to the underlying dermis by means of (hemidesmosomes attached to the basement membrane. ZFIN:ZDB-PUB-040726-12 The tissue which lies between the basal stratum and the superficial stratum. This layer is composed of a variable number of cell layers which contain mucous goblet cells, club cells and sensory cells. Most of the cells of this region are undifferentiated. They serve as a reservoir to replace dead cells in any of the epidermis regions. TAO:0001181 zebrafish_anatomy ZFA:0001181 epidermal intermediate stratum ZFA:0001181 The tissue which lies between the basal stratum and the superficial stratum. This layer is composed of a variable number of cell layers which contain mucous goblet cells, club cells and sensory cells. Most of the cells of this region are undifferentiated. They serve as a reservoir to replace dead cells in any of the epidermis regions. ZFIN:ZDB-PUB-040726-12 Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. TAO:0001182 stratum compactum zebrafish_anatomy ZFA:0001182 dermal deep region ZFA:0001182 Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. ZFIN:ZDB-PUB-040726-12 Outer portion of the dermis composed of a loose collagenous matrix housing numerous fibroblasts, nerves, some pigment cells, and scales. Scale development takes place in this layer of the dermis. TAO:0001183 stratum laxum zebrafish_anatomy ZFA:0001183 dermal superficial region ZFA:0001183 Outer portion of the dermis composed of a loose collagenous matrix housing numerous fibroblasts, nerves, some pigment cells, and scales. Scale development takes place in this layer of the dermis. ZFIN:ZDB-PUB-040726-12 Paired fin located in the abdominal position of the body. TAO:0001184 pelvic fins zebrafish_anatomy ZFA:0001184 pelvic fin ZFA:0001184 Paired fin located in the abdominal position of the body. TAO:curator pelvic fins The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. TAO:0001185 zebrafish_anatomy EVL ZFA:0001185 periderm ZFA:0001185 The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. ZFIN:ZDB-PUB-040726-12 Acellular anatomical structure that is a layer of collagen fibrils in the immature integument in a subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. TAO:0001186 primary dermal stroma zebrafish_anatomy ZFA:0001186 collagenous dermal stroma ZFA:0001186 Acellular anatomical structure that is a layer of collagen fibrils in the immature integument in a subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040726-12 Embryonic structure that gives rise to the midbrain hindbrain boundary. TAO:0001187 presumptive midbrain-hindbrain boundary zebrafish_anatomy ZFA:0001187 presumptive midbrain hindbrain boundary ZFA:0001187 Embryonic structure that gives rise to the midbrain hindbrain boundary. GOC:mh ORCiD:0000-0001-9114-8737 The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swim bladder to the inner ear (Alexander, 1962). TAO:0001188 zebrafish_anatomy ZFA:0001188 Weberian apparatus ZFA:0001188 The Weberian apparatus consists of the modified anteriormost four vertebrae and associated structures of otophysans which transduce sound or pressure waves from the tunica externa of the swim bladder to the inner ear (Alexander, 1962). GOC:mh ORCiD:0000-0001-9114-8737 All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988). Adult zebrafish usually 32 vertebrae but may have as few as 30 to as many as 33 vertebrae. TAO:0001189 vertebrae zebrafish_anatomy ZFA:0001189 vertebra ZFA:0001189 All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988). Adult zebrafish usually 32 vertebrae but may have as few as 30 to as many as 33 vertebrae. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-020807-1 vertebrae The first four vertebrae, which are part of the Weberian apparatus. TAO:0001190 Weberian vertebrae zebrafish_anatomy ZFA:0001190 Weberian vertebra ZFA:0001190 The first four vertebrae, which are part of the Weberian apparatus. GOC:mh ORCiD:0000-0001-9114-8737 Weberian vertebrae Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal. TAO:0001191 small supraneural sn2 zebrafish_anatomy ZFA:0001191 supraneural 2 ZFA:0001191 Supraneural 2 is an ovoid cartilage or cartilage replacement bone located above centrum 2. It forms an immovable joint with supraneural 3 and contributes to the neural complex roofing the neural canal. GOC:mh ORCiD:0000-0001-9114-8737 Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface. TAO:0001192 large supraneural sn3 zebrafish_anatomy ZFA:0001192 supraneural 3 ZFA:0001192 Supraneural 3 is an elongated cartilage or cartilage replacement bone above vertebrae 3 and 4, developmentally fusing with NA 3 and 4. A crest or blade of membrane bone forms from its dorsal surface. GOC:mh ORCiD:0000-0001-9114-8737 Supraneural located between vertebra 7 and 8. TAO:0001193 zebrafish_anatomy ZFA:0001193 supraneural 8 ZFA:0001193 Supraneural located between vertebra 7 and 8. ZFIN:ZDB-PUB-031103-13 Neural crest that is part of the head. TAO:0001194 zebrafish_anatomy ZFA:0001194 cranial neural crest ZFA:0001194 Neural crest that is part of the head. GOC:ymb ORCiD:0000-0002-9900-7880 The anterior portion of the adenohypophysis. Comprised of the proximal and rostral pars anterior. TAO:0001195 pars distalis zebrafish_anatomy ZFA:0001195 pars anterior ZFA:0001195 The anterior portion of the adenohypophysis. Comprised of the proximal and rostral pars anterior. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0001196 zebrafish_anatomy ZFA:0001196 This structure does not exist in Zebrafish. Consider proximal pars anterior ZFA:0005581. pars tuberalis true ZFA:0001196 Caudal portion of the adenohypophysis. TAO:0001197 zebrafish_anatomy ZFA:0001197 pars intermedia ZFA:0001197 Caudal portion of the adenohypophysis. ZFIN:ZDB-PUB-080616-4 Portion of tissue that gives rise to the adenohypophysis. TAO:0001198 pituitary placode zebrafish_anatomy ZFA:0001198 adenohypophyseal placode ZFA:0001198 Portion of tissue that gives rise to the adenohypophysis. GOC:cvs ORCiD:0000-0002-2244-7917 Brain structure which is a short stalk connecting the neurohypophysis with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis. TAO:0001199 hypophysial stalk infundibulum of hypothalamus pituitary stalk zebrafish_anatomy ZFA:0001199 infundibulum ZFA:0001199 Brain structure which is a short stalk connecting the neurohypophysis with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis. GOC:cvs ORCiD:0000-0002-2244-7917 Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism. TAO:0001200 zebrafish_anatomy ZFA:0001200 corpuscles of Stannius ZFA:0001200 Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0001201 zebrafish_anatomy ZFA:0001201 ventral lateral mesoderm ZFA:0001201 Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye. TAO:0001202 eye cup zebrafish_anatomy ZFA:0001202 optic cup ZFA:0001202 Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure that attach the zonules, that suspend the lens, to the eye. The ciliary zone secretes aqueous humor. Unlike mammals zebrafish the ciliary zone dose not contain processes or a circumferential band of muscle. TAO:0001203 ciliary epithelial zone zebrafish_anatomy ciliary bodies ciliary body ZFA:0001203 May need to obsolete this term, ZDB-PUB-050701-15. The ciliary "body" does not contain processes or a cumferential band of muscle. For this reason, we refer to the region adjacent and posterior to the iris as the ciliary zone, and not the ciliary body. The ciliary zone, however, is expanded and has a morphology consistent with contraction in a small area of the ventral-most region. ciliary zone ZFA:0001203 Multi-tissue structure that attach the zonules, that suspend the lens, to the eye. The ciliary zone secretes aqueous humor. Unlike mammals zebrafish the ciliary zone dose not contain processes or a circumferential band of muscle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 ciliary bodies Region of the mesoderm that is located along the rostral-caudal axis of the embryo. TAO:0001204 zebrafish_anatomy ZFA:0001204 axial mesoderm ZFA:0001204 Region of the mesoderm that is located along the rostral-caudal axis of the embryo. GOC:cvs ORCiD:0000-0002-2244-7917 Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jaw, or ventral mandibular arch. It is typically resorbed in adults. TAO:0001205 ventral mandibular cartilage zebrafish_anatomy ZFA:0001205 Meckel's cartilage ZFA:0001205 Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jaw, or ventral mandibular arch. It is typically resorbed in adults. GOC:ymb ORCiD:0000-0002-9900-7880 TAO:0001206 IM zebrafish_anatomy ZFA:0001206 intermediate mesoderm ZFA:0001206 Embryonic structure, part of the neural keel, that gives rise to rhombomere 1. TAO:0001207 zebrafish_anatomy ZFA:0001207 presumptive rhombomere 1 ZFA:0001207 Embryonic structure, part of the neural keel, that gives rise to rhombomere 1. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, part of the neural keel, that gives rise to rhombomere 2. TAO:0001208 zebrafish_anatomy ZFA:0001208 presumptive rhombomere 2 ZFA:0001208 Embryonic structure, part of the neural keel, that gives rise to rhombomere 2. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, part of the neural keel, that gives rise to rhombomere 7. TAO:0001209 zebrafish_anatomy ZFA:0001209 presumptive rhombomere 7 ZFA:0001209 Embryonic structure, part of the neural keel, that gives rise to rhombomere 7. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, part of the neural keel, that gives rise to rhombomere 6. TAO:0001210 zebrafish_anatomy ZFA:0001210 presumptive rhombomere 6 ZFA:0001210 Embryonic structure, part of the neural keel, that gives rise to rhombomere 6. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, part of the neural keel, that gives rise to rhombomere 5. TAO:0001211 zebrafish_anatomy ZFA:0001211 presumptive rhombomere 5 ZFA:0001211 Embryonic structure, part of the neural keel, that gives rise to rhombomere 5. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, part of the neural keel, that gives rise to rhombomere 4. TAO:0001212 zebrafish_anatomy ZFA:0001212 presumptive rhombomere 4 ZFA:0001212 Embryonic structure, part of the neural keel, that gives rise to rhombomere 4. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, part of the neural keel, that gives rise to rhombomere 3. TAO:0001213 zebrafish_anatomy ZFA:0001213 presumptive rhombomere 3 ZFA:0001213 Embryonic structure, part of the neural keel, that gives rise to rhombomere 3. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, part of the neural keel, that gives rise to rhombomere 8. TAO:0001214 zebrafish_anatomy ZFA:0001214 presumptive rhombomere 8 ZFA:0001214 Embryonic structure, part of the neural keel, that gives rise to rhombomere 8. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure that is paired, and is situated one on either side of and forming part of the lateral wall of the third ventricle. TAO:0001215 thalami zebrafish_anatomy ZFA:0001215 thalamus ZFA:0001215 Multi-tissue structure that is paired, and is situated one on either side of and forming part of the lateral wall of the third ventricle. GOC:mh ORCiD:0000-0001-9114-8737 thalami Anatomical cluster that is the regional skeletal system of the jaws, hyoid and branchial arches. TAO:0001216 pharyngeal arch skeleton pharyngeal skeleton zebrafish_anatomy ZFA:0001216 splanchnocranium ZFA:0001216 Anatomical cluster that is the regional skeletal system of the jaws, hyoid and branchial arches. GOC:mh ORCiD:0000-0001-9114-8737 Tissue along the lateral edges of the shield that is fated to develop into the hypochord. TAO:0001217 zebrafish_anatomy ZFA:0001217 presumptive hypochord ZFA:0001217 Tissue along the lateral edges of the shield that is fated to develop into the hypochord. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure, the part of the neural plate fated to become floor plate. TAO:0001218 zebrafish_anatomy ZFA:0001218 presumptive floor plate ZFA:0001218 Embryonic structure, the part of the neural plate fated to become floor plate. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0001219 Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials. TAO:0001220 copulae zebrafish_anatomy ZFA:0001220 copula ZFA:0001220 Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials. GOC:mh ORCiD:0000-0001-9114-8737 copulae Copula that is ventral, median, and associated with pharyngeal arches 3-5. A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials. TAO:0001221 anterior copula zebrafish_anatomy ZFA:0001221 copula 1 ZFA:0001221 Copula that is ventral, median, and associated with pharyngeal arches 3-5. A long slender cartilage extending along the midline from the posterior tip of the basihyal to between the third hypobranchials. GOC:mh ORCiD:0000-0001-9114-8737 Copula that is ventral, median, and associated with pharyngeal arches 6-7. A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials. TAO:0001222 posterior copula zebrafish_anatomy ZFA:0001222 copula 2 ZFA:0001222 Copula that is ventral, median, and associated with pharyngeal arches 6-7. A cartilage extending from the posterior tip of copula 1 to the anterior tips of the fifth ceratobranchials. GOC:mh ORCiD:0000-0001-9114-8737 Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm). TAO:0001223 zebrafish_anatomy ZFA:0001223 basibranchial 1 ZFA:0001223 Basibranchial 1 ossifies posterior to the basihyal and anterior to the first hypobranchials in copula 1 (7.6 mm). GOC:mh ORCiD:0000-0001-9114-8737 Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm). It is the first of the three basibranchials to ossify. TAO:0001224 zebrafish_anatomy ZFA:0001224 basibranchial 2 ZFA:0001224 Basibranchial 2 ossifies in copula 1 posterior to the first hypobranchials and anterior to the second hypobranchials (6.8 mm). It is the first of the three basibranchials to ossify. GOC:mh ORCiD:0000-0001-9114-8737 Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials, anterior to the third hypobranchials (7.6 mm) and associated with pharyngeal arch 5. Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult. TAO:0001225 zebrafish_anatomy ZFA:0001225 basibranchial 3 ZFA:0001225 Basibranchial 3 ossifies in copula 1 posterior to the second hypobranchials, anterior to the third hypobranchials (7.6 mm) and associated with pharyngeal arch 5. Cartilage pads, remnants of copula 1, remain between adjacent basibranchials in the adult. GOC:mh ORCiD:0000-0001-9114-8737 Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials. TAO:0001226 zebrafish_anatomy ZFA:0001226 basibranchial 4 ZFA:0001226 Occasionally, a fourth basibranchial ossifies in the narrow copula 2 cartilage, which lies posterior to the third basibranchial and anterior to the anteromedial articulation of the fifth ceratobranchials. GOC:mh ORCiD:0000-0001-9114-8737 Skeletal and cartilaginous elements of the first pharyngeal arch. TAO:0001227 jaw jaw cartilage jaws oral jaw skeleton pharyngeal arch 1 skeleton zebrafish_anatomy ZFA:0001227 mandibular arch skeleton ZFA:0001227 Skeletal and cartilaginous elements of the first pharyngeal arch. GOC:ymb ORCiD:0000-0002-9900-7880 jaws Anatomical cluster made up of skeletal and cartilaginous elements of the third pharyngeal arch, also called first gill or branchial arch. TAO:0001228 branchial arch 1 skeleton gill arch 1 skeleton visceral arch 3 skeleton zebrafish_anatomy ZFA:0001228 pharyngeal arch 3 skeleton ZFA:0001228 Anatomical cluster made up of skeletal and cartilaginous elements of the third pharyngeal arch, also called first gill or branchial arch. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical cluster made up of skeletal and cartilaginous elements of the seventh pharyngeal arch, also called fifth gill or branchial arch. TAO:0001229 branchial arch 5 skeleton gill arch 5 skeleton visceral arch 7 skeleton zebrafish_anatomy ZFA:0001229 pharyngeal arch 7 skeleton ZFA:0001229 Anatomical cluster made up of skeletal and cartilaginous elements of the seventh pharyngeal arch, also called fifth gill or branchial arch. GOC:ymb ORCiD:0000-0002-9900-7880 Anatomical cluster made up of skeletal and cartilaginous elements of the sixth pharyngeal arch, also called fourth gill or branchial arch. TAO:0001230 branchial arch 4 skeleton gill arch 4 skeleton visceral arch 6 skeleton zebrafish_anatomy ZFA:0001230 pharyngeal arch 6 skeleton ZFA:0001230 Anatomical cluster made up of skeletal and cartilaginous elements of the sixth pharyngeal arch, also called fourth gill or branchial arch. GOC:ymb ORCiD:0000-0002-9900-7880 Anatomical cluster made up of skeletal and cartilaginous elements of the fourth pharyngeal arch, also called second gill or branchial arch. TAO:0001231 branchial arch 2 skeleton gill arch 2 skeleton visceral arch 4 skeleton zebrafish_anatomy ZFA:0001231 pharyngeal arch 4 skeleton ZFA:0001231 Anatomical cluster made up of skeletal and cartilaginous elements of the fourth pharyngeal arch, also called second gill or branchial arch. GOC:ymb ORCiD:0000-0002-9900-7880 Anatomical cluster made up of skeletal and cartilaginous elements of the fifth pharyngeal arch, also called third gill or branchial arch. TAO:0001232 branchial arch 3 skeleton gill arch 3 skeleton visceral arch 5 skeleton zebrafish_anatomy ZFA:0001232 pharyngeal arch 5 skeleton ZFA:0001232 Anatomical cluster made up of skeletal and cartilaginous elements of the fifth pharyngeal arch, also called third gill or branchial arch. GOC:ymb ORCiD:0000-0002-9900-7880 Ossification that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 15mm. TAO:0001233 hypobranchial 1 bones zebrafish_anatomy ZFA:0001233 hypobranchial 1 bone ZFA:0001233 Ossification that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 15mm. GOC:cvs GOC:mh ORCID:0000-0002-2244-7917 ORCiD:0000-0001-9114-8737 hypobranchial 1 bones Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial. TAO:0001234 hypobranchial 4 bones zebrafish_anatomy ZFA:0001234 This may need to be obsoleted since it looks like the cartilage is either reabsorbed or fused with another skeletal element. hypobranchial 4 bone ZFA:0001234 Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial. GOC:mh ORCiD:0000-0001-9114-8737 hypobranchial 4 bones Ossifications that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Ossification may begin when the fish is 8mm. TAO:0001235 hypobranchial 3 bones zebrafish_anatomy ZFA:0001235 hypobranchial 3 bone ZFA:0001235 Ossifications that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Ossification may begin when the fish is 8mm. GOC:cvs GOC:mh ORCID:0000-0002-2244-7917 ORCiD:0000-0001-9114-8737 hypobranchial 3 bones Ossification that develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 12 mm. TAO:0001236 hypobranchial 2 bones zebrafish_anatomy ZFA:0001236 hypobranchial 2 bone ZFA:0001236 Ossification that develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 12 mm. GOC:cvs GOC:mh ORCID:0000-0002-2244-7917 ORCiD:0000-0001-9114-8737 hypobranchial 2 bones Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins. TAO:0001237 zebrafish_anatomy ZFA:0001237 ceratobranchial 1 bone ZFA:0001237 Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure that consists of pigmented stroma and is connected to a sphincter muscle and a dilator muscle which open and close the pupil located in the center of the iris. TAO:0001238 irises zebrafish_anatomy ZFA:0001238 iris ZFA:0001238 Multi-tissue structure that consists of pigmented stroma and is connected to a sphincter muscle and a dilator muscle which open and close the pupil located in the center of the iris. GOC:mh ORCiD:0000-0001-9114-8737 http://www.encyclopedia.thefreedictionary.com/Iris+(anatomy) irises Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. Ceratobranchial 5 ossifies before ceratobranchials 1-4. In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined. TAO:0001239 zebrafish_anatomy ZFA:0001239 ceratobranchial 5 bone ZFA:0001239 Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. Ceratobranchial 5 ossifies before ceratobranchials 1-4. In the adult, ceratobranchial 5 is heavily ossified and crescent-shaped with two to three rows of posteromedially directed teeth. The anteroventral tips of ceratobranchials 5 meet medially and are ligamentously joined. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone and medially with copula 2. Gill rakers are present on the anterior and posterior margins. TAO:0001240 zebrafish_anatomy ZFA:0001240 ceratobranchial 4 bone ZFA:0001240 Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone and medially with copula 2. Gill rakers are present on the anterior and posterior margins. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins. TAO:0001241 zebrafish_anatomy ZFA:0001241 ceratobranchial 3 bone ZFA:0001241 Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins. TAO:0001242 zebrafish_anatomy ZFA:0001242 ceratobranchial 2 bone ZFA:0001242 Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone and medially with the cartilage between the basibranchials. Gill rakers are present on the anterior and posterior margins. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1. TAO:0001243 zebrafish_anatomy ZFA:0001243 epibranchial 1 bone ZFA:0001243 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. The narrowed medial end of epibranchial 1 articulates through cartilage with pharyngobranchial 1. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial cartilage that is bilaterally paired and appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial 5, to the cartilaginous junction of ceratobranchial 4 and epibranchial 4. TAO:0001244 interbranchial IV zebrafish_anatomy ZFA:0001244 epibranchial 5 ZFA:0001244 Epibranchial cartilage that is bilaterally paired and appears as a separate center of chondrification (6.2 mm) posterior to the lateral tip of epibranchial 4 and immediately anterior to the upper end of ceratobranchial 5. In the adult, epibranchial 5 persists as a small, cartilaginous rod extending from the cartilaginous junction of the posterodorsal tip of the uncinate process of epibranchial 4 and tip of ceratobranchial 5, to the cartilaginous junction of ceratobranchial 4 and epibranchial 4. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. The narrow end of epibranchial 4 is slightly flared, and it articulates with cartilaginous pharyngobranchial 4. TAO:0001245 zebrafish_anatomy ZFA:0001245 epibranchial 4 bone ZFA:0001245 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. The narrow end of epibranchial 4 is slightly flared, and it articulates with cartilaginous pharyngobranchial 4. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1. TAO:0001246 zebrafish_anatomy ZFA:0001246 epibranchial 2 bone ZFA:0001246 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. The flared medial end of epibranchial 2 articulates with bifurcate lateral projections from pharyngobranchial 1. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3. TAO:0001247 infrapharyngobranchial 3 zebrafish_anatomy ZFA:0001247 epibranchial 3 bone ZFA:0001247 Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. The flared medial end of epibranchial3 articulates with the posterolateral edge of pharyngobranchial2 + 3. GOC:mh ORCiD:0000-0001-9114-8737 ZFA:0001223 zebrafish_anatomy ZFA:0001248 pharyngobranchial 1 true ZFA:0001248 The exocrine pancreas is a diffuse organ composed of a branching network of ducts and associated acinar glands that manufacture the proteolytic enzymes and bicarbonate required for digestion. TAO:0001249 zebrafish_anatomy head pancreas rostral pancreas ZFA:0001249 exocrine pancreas ZFA:0001249 The exocrine pancreas is a diffuse organ composed of a branching network of ducts and associated acinar glands that manufacture the proteolytic enzymes and bicarbonate required for digestion. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-050623-3 head pancreas ZFIN:ZDB-PUB-080922-7 rostral pancreas ZFIN:ZDB-PUB-050623-3. Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage & Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3. It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2. In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it. TAO:0001250 infrapharyngobranchial 2 zebrafish_anatomy ZFA:0001250 pharyngobranchial 2 bone ZFA:0001250 Pharyngobranchial 2 (misidentified as pharyngobranchial 1 in Cubbage & Mabee, 1993 and Mayden 1989) is present and separate from pharyngobranchial 3. It (8.0 mm) ossifies after pharyngobranchial 3. In the adult, the cartilaginous anterior end of the ossified pharyngobranchial 2 articulates with the cartilaginous medial tip of epibranchial 1. It articulates anterolaterally and posterolaterally with the anterior and posterior cartilaginous tips of epibranchial2. In Cyprinidae pb3 overlaps pb2 (Siebert, 1987; Cavender & Coburn, 1992) but does not fuse to it. GOC:mh ORCiD:0000-0001-9114-8737 Pharyngobranchial cartilage which forms in close proximity to or fused with pharyngobranchial 3; may not be distinguishable as a separate element in the adult. Remains cartilaginous. TAO:0001251 infrapharyngobranchial 4 cartilage infrapharyngobranchials zebrafish_anatomy ZFA:0001251 pharyngobranchial 4 cartilage ZFA:0001251 Pharyngobranchial cartilage which forms in close proximity to or fused with pharyngobranchial 3; may not be distinguishable as a separate element in the adult. Remains cartilaginous. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-192 Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3. TAO:0001252 pharyngobranchial 3 bones zebrafish_anatomy ZFA:0001252 pharyngobranchial 3 bone ZFA:0001252 Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3. GOC:mh ORCiD:0000-0001-9114-8737 pharyngobranchial 3 bones ZFA:0001224 ZFA:0001225 zebrafish_anatomy ZFA:0001253 pharyngobranchial 2+3 true ZFA:0001253 zebrafish_anatomy ZFA:0001254 cranial motoneurons true ZFA:0001254 true ZFA:0001255 Portion of tissue that is the lateral part of the floor plate. TAO:0001256 zebrafish_anatomy ZFA:0001256 lateral floor plate ZFA:0001256 Portion of tissue that is the lateral part of the floor plate. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue that is the medial part of the floor plate and is located adjacent to the notochord. TAO:0001257 zebrafish_anatomy ZFA:0001257 medial floor plate ZFA:0001257 Portion of tissue that is the medial part of the floor plate and is located adjacent to the notochord. GOC:mh ORCiD:0000-0001-9114-8737 Floor plate that is part of the rhombomeres. TAO:0001258 zebrafish_anatomy floor plate hindbrain region ZFA:0001258 floor plate rhombomere region ZFA:0001258 Floor plate that is part of the rhombomeres. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0001259 forebrain vesicle prosencephalic ventricle zebrafish_anatomy ZFA:0001259 forebrain ventricle ZFA:0001259 The zebrafish endocrine pancreas is an compound organ component composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin. TAO:0001260 zebrafish_anatomy pancreatic islet tail pancreas ZFA:0001260 May be called pancreatic islets of Langerhans (related synonym). Alpha cells secrete glucagon like peptide, beta-insulin, delta cells-somatostatin, pancreastatin. May also be called "Brockman bodies". endocrine pancreas ZFA:0001260 The zebrafish endocrine pancreas is an compound organ component composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 tail pancreas ZFIN:ZDB-PUB-080922-7 TAO:0001261 zebrafish_anatomy ZFA:0001261 ventricular system ZFA:0001261 Portion of tissue that gives rise to the immature gonad. TAO:0001262 gonadal primordium undifferentiated gonad zebrafish_anatomy ZFA:0001262 gonad primordium ZFA:0001262 Portion of tissue that gives rise to the immature gonad. GOC:mh ORCiD:0000-0001-9114-8737 Stage I follicles (less than 140 microns) contain a stage 1 oocyte and are in the primary growth stage. TAO:0001263 ovarian follicle stage 1 previtellogenic ovarian follicle zebrafish_anatomy ZFA:0001263 ovarian follicle stage I ZFA:0001263 Stage I follicles (less than 140 microns) contain a stage 1 oocyte and are in the primary growth stage. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-1020 Stage IV follicles (690-730 microns) contain a stage 4 oocyte and are considered mature. TAO:0001264 mature ovarian follicle ovarian follicle stage 4 zebrafish_anatomy ZFA:0001264 ovarian follicle stage IV ZFA:0001264 Stage IV follicles (690-730 microns) contain a stage 4 oocyte and are considered mature. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-1020 Stage II follicles (140-340 microns) contain a stage 2 oocyte. TAO:0001265 ovarian follicle stage 2 ovarian follicles stage II zebrafish_anatomy ZFA:0001265 ovarian follicle stage II ZFA:0001265 Stage II follicles (140-340 microns) contain a stage 2 oocyte. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-1020 ovarian follicles stage II Stage III follicles (340-690 microns) contain a stage 3 oocyte. TAO:0001266 ovarian follicle stage 3 ovarian follicles stage III zebrafish_anatomy ZFA:0001266 ovarian follicle stage III ZFA:0001266 Stage III follicles (340-690 microns) contain a stage 3 oocyte. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-1020 ovarian follicles stage III Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the head. TAO:0001267 head vasculature zebrafish_anatomy ZFA:0001267 cranial vasculature ZFA:0001267 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the head. GOC:cvs ORCiD:0000-0002-2244-7917 Is a duct part of the testis that carries sperm and fluid to the cloaca. TAO:0001268 efferent duct efferent tubule sperm ducts zebrafish_anatomy ZFA:0001268 sperm duct ZFA:0001268 Is a duct part of the testis that carries sperm and fluid to the cloaca. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 sperm ducts Fin undergoing the process of regeneration. TAO:0001269 regenerating fins zebrafish_anatomy ZFA:0001269 regenerating fin ZFA:0001269 Fin undergoing the process of regeneration. GOC:cvs ORCiD:0000-0002-2244-7917 regenerating fins A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise. TAO:0001270 regeneration blastema zebrafish_anatomy ZFA:0001270 blastema ZFA:0001270 A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-061108-12 regeneration blastema ZFIN:ZDB-PUB-061108-12 TAO:0001271 posterior pituitary zebrafish_anatomy ZFA:0001271 neurohypophysis ZFA:0001271 The dorsal portion of the first pharyngeal arch, comprising the upper jaw. TAO:0001272 dorsal mandibular arch dorsal visceral arch 1 upper jaw upper pharyngeal jaw zebrafish_anatomy ZFA:0001272 palatoquadrate arch ZFA:0001272 The dorsal portion of the first pharyngeal arch, comprising the upper jaw. GOC:mh ORCiD:0000-0001-9114-8737 The ventral portion of the first pharyngeal arch, comprising the lower jaw. TAO:0001273 lower jaw mandible mandibular series zebrafish_anatomy ZFA:0001273 ventral mandibular arch ZFA:0001273 The ventral portion of the first pharyngeal arch, comprising the lower jaw. GOC:ymb ORCiD:0000-0002-9900-7880 The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm). In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage. TAO:0001274 sesamoid articular zebrafish_anatomy coronoid ZFA:0001274 coronomeckelian ZFA:0001274 The coronomeckelian is a membrane bone that ossifies on Meckel's cartilage where the tendon from the adductor mandibulae A3 inserts (6.1mm). In the adult, the coronomeckelian is a small, irregularly shaped bone that is fused to the dorsomedial surface of the anguloarticular, just dorsal to Meckel's cartilage. GOC:ymb ORCiD:0000-0002-9900-7880 ZFA:0001612 zebrafish_anatomy ZFA:0001275 mentomeckelian true ZFA:0001275 TAO:0001276 hyoid bars zebrafish_anatomy ZFA:0001276 pharyngeal arch 2 skeleton ZFA:0001276 The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the ductus communicans. TAO:0001277 camera arerea weberiana zebrafish_anatomy ZFA:0001277 anterior chamber swim bladder ZFA:0001277 The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the ductus communicans. ZFIN:ZDB-PUB-060306-11 The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the ductus communicans. This chamber corresponds to the swim bladder found in larval fish. TAO:0001278 zebrafish_anatomy ZFA:0001278 posterior chamber swim bladder ZFA:0001278 The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the ductus communicans. This chamber corresponds to the swim bladder found in larval fish. ZFIN:ZDB-PUB-060306-11 Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL). TAO:0001279 branchiostegal rays 1 zebrafish_anatomy ZFA:0001279 branchiostegal ray 1 ZFA:0001279 Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL). GOC:cvs ORCiD:0000-0002-2244-7917 branchiostegal rays 1 Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL). TAO:0001280 branchiostegal rays 3 zebrafish_anatomy ZFA:0001280 branchiostegal ray 3 ZFA:0001280 Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL). GOC:cvs ORCiD:0000-0002-2244-7917 branchiostegal rays 3 Branchiostegal ray 2 is between rays 1 and 3 and ossifies second. TAO:0001281 branchiostegal rays 2 zebrafish_anatomy ZFA:0001281 branchiostegal ray 2 ZFA:0001281 Branchiostegal ray 2 is between rays 1 and 3 and ossifies second. GOC:cvs ORCiD:0000-0002-2244-7917 branchiostegal rays 2 The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. TAO:0001282 anterior hypophysis anterior pituitary zebrafish_anatomy ZFA:0001282 Changed start to long-pec from protruding mouth. In future, make a primordium and split the stages. adenohypophysis ZFA:0001282 The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. ZFIN:ZDB-PUB-040202-1 Anatomical space that is located in the center of the iris and allows light to impinge on the retina. TAO:0001283 pupils zebrafish_anatomy ZFA:0001283 pupil ZFA:0001283 Anatomical space that is located in the center of the iris and allows light to impinge on the retina. GOC:mh ORCiD:0000-0001-9114-8737 http://www.encyclopedia.thefreedictionary.com/pupil pupils Groove that is in the ventral optic cup and through which blood vessels pass to the enclosed mesenchyme. TAO:0001284 optic fissures zebrafish_anatomy choroid fissure ZFA:0001284 optic fissure ZFA:0001284 Groove that is in the ventral optic cup and through which blood vessels pass to the enclosed mesenchyme. http://www.medical-dictionary.thefreedictionary.com/optic+fissure optic fissures Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. TAO:0001285 intersegmental vessels intersomitic vessels segmental vessel zebrafish_anatomy ZFA:0001285 intersegmental vessel ZFA:0001285 Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-030908-4 intersegmental vessels Post-vent vasculature which forms an interconnecting network of venous tubes. The caudal vein plexus forms via a very active period of angiogenic sprouting, beginning at 25 hpf when venous endothelial cells of the posterior cardinal vein sprout and migrate ventrally, then fuse with neighboring tip cells. This process reiterates during a five-hour window, forming a primordial plexus by 30 hpf. By two days of development, the primitive caudal vein plexus has matured into a complex, well-perfused, venous vascular network. Starting at 4 dpf the caudal vein plexus starts to remodel and simplify. TAO:0001286 zebrafish_anatomy ZFA:0001286 caudal vein plexus ZFA:0001286 Post-vent vasculature which forms an interconnecting network of venous tubes. The caudal vein plexus forms via a very active period of angiogenic sprouting, beginning at 25 hpf when venous endothelial cells of the posterior cardinal vein sprout and migrate ventrally, then fuse with neighboring tip cells. This process reiterates during a five-hour window, forming a primordial plexus by 30 hpf. By two days of development, the primitive caudal vein plexus has matured into a complex, well-perfused, venous vascular network. Starting at 4 dpf the caudal vein plexus starts to remodel and simplify. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 ZFIN:ZDB-PUB-111011-36 Renal duct that collects filtrate from the renal corpuscle and transports it to the collecting duct. Different parts of the renal tubule reabsorb specific components of the filtrate to leave only waste. TAO:0001287 mesonephric tubule renal tubules zebrafish_anatomy ZFA:0001287 renal tubule ZFA:0001287 Renal duct that collects filtrate from the renal corpuscle and transports it to the collecting duct. Different parts of the renal tubule reabsorb specific components of the filtrate to leave only waste. GOC:cvs ORCiD:0000-0002-2244-7917 renal tubules The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes, filters blood from the glomerular capillaries. TAO:0001288 renal glomeruli zebrafish_anatomy glomerular capillary tuft ZFA:0001288 renal glomerulus ZFA:0001288 The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes, filters blood from the glomerular capillaries. GOC:cvs ORCiD:0000-0002-2244-7917 renal glomeruli Proliferative region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. TAO:0001289 CMZ circumferential germinal zone peripheral growth zone retinal ciliary marginal zone zebrafish_anatomy retinal proliferative zone ZFA:0001289 ciliary marginal zone ZFA:0001289 Proliferative region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-050427-5 Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth. TAO:0001290 zebrafish_anatomy oral ectoderm ZFA:0001290 stomodeum ZFA:0001290 Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-050523-10 oral ectoderm ZFIN:ZDB-PUB-100726-23 The sensory ganglion of the facial nerve. TAO:0001291 gVII geniculate ganglion zebrafish_anatomy ZFA:0001291 facial ganglion ZFA:0001291 The sensory ganglion of the facial nerve. GOC:mh ORCiD:0000-0001-9114-8737 The stalk emanates from the diencephalic roof at a left-of-medial position. TAO:0001292 pineal stalk zebrafish_anatomy ZFA:0001292 epiphyseal stalk ZFA:0001292 The stalk emanates from the diencephalic roof at a left-of-medial position. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0001293 posterior kidneys zebrafish_anatomy ZFA:0001293 posterior kidney ZFA:0001293 posterior kidneys Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear and dorsally to the posterior pharyngeal pouches. TAO:0001294 epibranchial placodes zebrafish_anatomy ZFA:0001294 epibranchial placode ZFA:0001294 Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear and dorsally to the posterior pharyngeal pouches. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-050804-2 ZFIN:ZDB-PUB-070122-31 epibranchial placodes Epibranchial placode that gives rise to the facial ganglia. TAO:0001295 geniculate placode zebrafish_anatomy ZFA:0001295 facial placode ZFA:0001295 Epibranchial placode that gives rise to the facial ganglia. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070122-31 Epibranchial placode that gives rise to the glossopharyngeal ganglia. Associated with the third pharyngeal arch. TAO:0001296 petrosal placode zebrafish_anatomy ZFA:0001296 glossopharyngeal placode ZFA:0001296 Epibranchial placode that gives rise to the glossopharyngeal ganglia. Associated with the third pharyngeal arch. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070122-31 Epibranchial placode that gives rise to vagal ganglion 1. TAO:0001297 zebrafish_anatomy ZFA:0001297 vagal placode 1 ZFA:0001297 Epibranchial placode that gives rise to vagal ganglion 1. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070122-31 Epibranchial placode that gives rise to vagal ganglion 2. TAO:0001298 zebrafish_anatomy ZFA:0001298 vagal placode 2 ZFA:0001298 Epibranchial placode that gives rise to vagal ganglion 2. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070122-31 Epibranchial placode that gives rise to vagal ganglion 3. TAO:0001299 zebrafish_anatomy ZFA:0001299 vagal placode 3 ZFA:0001299 Epibranchial placode that gives rise to vagal ganglion 3. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070122-3 Epibranchial placode that gives rise to vagal ganglion 4. TAO:0001300 zebrafish_anatomy ZFA:0001300 vagal placode 4 ZFA:0001300 Epibranchial placode that gives rise to vagal ganglion 4. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070122-31 TAO:0001301 gIX petrosal ganglion zebrafish_anatomy ZFA:0001301 glossopharyngeal ganglion ZFA:0001301 TAO:0001302 gX1 nodose ganglion 1 zebrafish_anatomy ZFA:0001302 vagal ganglion 1 ZFA:0001302 TAO:0001303 gX2 nodose ganglion 2 zebrafish_anatomy ZFA:0001303 vagal ganglion 2 ZFA:0001303 TAO:0001304 gX3 nodose ganglion 3 zebrafish_anatomy ZFA:0001304 vagal ganglion 3 ZFA:0001304 TAO:0001305 gX4 nodose ganglion 4 zebrafish_anatomy ZFA:0001305 vagal ganglion 4 ZFA:0001305 One of a series of paired bony or cartilaginous arches that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. There are seven pharyngeal arches. TAO:0001306 pharyngeal arches zebrafish_anatomy ZFA:0001306 pharyngeal arch ZFA:0001306 One of a series of paired bony or cartilaginous arches that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. There are seven pharyngeal arches. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-16 ZFIN:ZDB-PUB-131119-6 ZFIN:ZDB-PUB-961014-985 pharyngeal arches Muscle system of the pharyngeal region. TAO:0001307 zebrafish_anatomy ZFA:0001307 pharyngeal musculature ZFA:0001307 Muscle system of the pharyngeal region. GOC:cvs ORCiD:0000-0002-2244-7917 Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. CARO:0000032 TAO:0001308 body part zebrafish_anatomy ZFA:0001308 organism subdivision ZFA:0001308 Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. GOC:mh ORCiD:0000-0001-9114-8737 Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia. TAO:0001309 neurogenic placodes zebrafish_anatomy ZFA:0001309 neurogenic placode ZFA:0001309 Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-050804-2 ZFIN:ZDB-PUB-070122-31 neurogenic placodes Lateral neurogenic placodes positioned dorsal of the epibranchial placodes. TAO:0001310 dorsolateral placodes zebrafish_anatomy ZFA:0001310 dorsolateral placode ZFA:0001310 Lateral neurogenic placodes positioned dorsal of the epibranchial placodes. GOC:mh ORCiD:0000-0001-9114-8737 dorsolateral placodes TAO:0001311 zebrafish_anatomy roof plate hindbrain ZFA:0001311 roof plate rhombomere region ZFA:0001311 TAO:0001312 anterodorsal lateral line ganglion zebrafish_anatomy ZFA:0001312 dorsal anterior lateral line ganglion ZFA:0001312 TAO:0001313 anteroventral lateral line ganglion zebrafish_anatomy ZFA:0001313 ventral anterior lateral line ganglion ZFA:0001313 The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system. TAO:0001314 pLLg posterior lateral line ganglia zebrafish_anatomy ZFA:0001314 posterior lateral line ganglion ZFA:0001314 The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system. GOC:ymb ORCiD:0000-0002-9900-7880 posterior lateral line ganglia The part of the heart connecting the atrium to the cardiac ventricle. TAO:0001315 AV canal AVC zebrafish_anatomy ZFA:0001315 atrioventricular canal ZFA:0001315 The part of the heart connecting the atrium to the cardiac ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Dorsolateral placode that gives rise to the anterior lateral line. TAO:0001316 anterior lateral line placodes zebrafish_anatomy ZFA:0001316 anterior lateral line placode ZFA:0001316 Dorsolateral placode that gives rise to the anterior lateral line. GOC:ymb ORCiD:0000-0002-9900-7880 anterior lateral line placodes Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves. TAO:0001317 endocardial cushions zebrafish_anatomy ZFA:0001317 ZDB-PUB-080309-14 says these don't exist but looked at 55 hpf rather then 36 hpf. endocardial cushion ZFA:0001317 Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves. GOC:cvs ORCiD:0000-0002-2244-7917 endocardial cushions The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates. TAO:0001318 zebrafish_anatomy ZFA:0001318 cardiac jelly ZFA:0001318 The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0001319 zebrafish_anatomy cardiac muscle heart muscle ZFA:0001319 myocardium ZFA:0001319 Layer that lines the lumen of the heart. TAO:0001320 zebrafish_anatomy ZFA:0001320 endocardium ZFA:0001320 Layer that lines the lumen of the heart. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0001321 neurocranial trabeculae trabecula trabecular cartilage zebrafish_anatomy ZFA:0001321 neurocranial trabecula ZFA:0001321 neurocranial trabeculae A tract originating in the epiphysis and fasciculating with the tract of the postoptic commissure dorsal to the ventral flexure. TAO:0001322 DVDT zebrafish_anatomy ZFA:0001322 dorsoventral diencephalic tract ZFA:0001322 A tract originating in the epiphysis and fasciculating with the tract of the postoptic commissure dorsal to the ventral flexure. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-719 ZFIN:ZDB-PUB-961014-955 The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. The mid intestine also appears to be involved in iron absorption. TAO:0001323 zebrafish_anatomy ZFA:0001323 mid intestine ZFA:0001323 The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. The mid intestine also appears to be involved in iron absorption. ZFIN:ZDB-PUB-050120-6 ZFIN:ZDB-PUB-050831-7 Musculature of the gut. TAO:0001324 gut musculature zebrafish_anatomy tunica muscularis ZFA:0001324 enteric musculature ZFA:0001324 Musculature of the gut. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 tunica muscularis http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra. TAO:0001325 neural prezygapophyses neural prezygopophyses zebrafish_anatomy ZFA:0001325 neural prezygapophysis ZFA:0001325 Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra. GOC:mh ORCiD:0000-0001-9114-8737 neural prezygapophyses Epithelium which borders the anterior and equitorial region of the lens. Lens growth in zebrafish occurs via the differentiation of additional fibre cells from lens epithelial cells. TAO:0001326 zebrafish_anatomy ZFA:0001326 lens epithelium ZFA:0001326 Epithelium which borders the anterior and equitorial region of the lens. Lens growth in zebrafish occurs via the differentiation of additional fibre cells from lens epithelial cells. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070504-24 ZFIN:ZDB-PUB-100202-20 Trunk musculature that is located in ventral wall of abdomen. TAO:0001327 zebrafish_anatomy ZFA:0001327 abdominal musculature ZFA:0001327 Trunk musculature that is located in ventral wall of abdomen. GOC:mh ORCiD:0000-0001-9114-8737 A metameric segment of the central nervous system. TAO:0001328 neural segment neuromeres zebrafish_anatomy ZFA:0001328 neuromere ZFA:0001328 A metameric segment of the central nervous system. GOC:mh ORCiD:0000-0001-9114-8737 neuromeres The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells. TAO:0001329 inner plexiform layer zebrafish_anatomy ZFA:0001329 retinal inner plexiform layer ZFA:0001329 The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells. GOC:mh ORCiD:0000-0001-9114-8737 The layer within the retina where the bipolar cells synapse with the photoreceptor cells. TAO:0001330 retinal outer plexiform layers zebrafish_anatomy ZFA:0001330 retinal outer plexiform layer ZFA:0001330 The layer within the retina where the bipolar cells synapse with the photoreceptor cells. GOC:mh ORCiD:0000-0001-9114-8737 retinal outer plexiform layers Layer that separates the inner segment portions of the photo receptors from their cell nucleus. TAO:0001331 external limiting membrane outer limiting membranes zebrafish_anatomy ZFA:0001331 outer limiting membrane ZFA:0001331 Layer that separates the inner segment portions of the photo receptors from their cell nucleus. GOC:mh ORCiD:0000-0001-9114-8737 outer limiting membranes TAO:0001332 spinal cord segment spinal neuromeres zebrafish_anatomy ZFA:0001332 spinal neuromere ZFA:0001332 spinal neuromeres zebrafish_anatomy ZFA:0001333 visceral organ true ZFA:0001333 Presumptive structure fated to become enteric nervous system. Develops from the vagal neural crest. TAO:0001334 zebrafish_anatomy ZFA:0001334 presumptive enteric nervous system ZFA:0001334 Presumptive structure fated to become enteric nervous system. Develops from the vagal neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001). TAO:0001335 supradorsals zebrafish_anatomy ZFA:0001335 supradorsal ZFA:0001335 Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001). GOC:mh ORCiD:0000-0001-9114-8737 supradorsals Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon). TAO:0001336 neural spines zebrafish_anatomy ZFA:0001336 neural spine ZFA:0001336 Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon). GOC:mh ORCiD:0000-0001-9114-8737 neural spines true ZFA:0001337 Folded tube that has parts intestinal bulb, mid intestine and posterior intestine. The intestine is where digestion and nutrient absorption occurs. TAO:0001338 zebrafish_anatomy ZFA:0001338 intestine ZFA:0001338 Folded tube that has parts intestinal bulb, mid intestine and posterior intestine. The intestine is where digestion and nutrient absorption occurs. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-050120-6 Telencephalic nucleus from which the axons of the anterior commissure originate. TAO:0001339 ntAC zebrafish_anatomy ZFA:0001339 nucleus of the tract of the anterior commissure ZFA:0001339 Telencephalic nucleus from which the axons of the anterior commissure originate. GOC:mh ORCiD:0000-0001-9114-8737 The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure. TAO:0001340 ntPOC zebrafish_anatomy ZFA:0001340 nucleus of the tract of the postoptic commissure ZFA:0001340 The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure. GOC:mh ORCiD:0000-0001-9114-8737 A zone of delayed differentiation at the midbrain hindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. TAO:0001341 IZ zebrafish_anatomy ZFA:0001341 intervening zone ZFA:0001341 A zone of delayed differentiation at the midbrain hindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. ZFIN:ZDB-PUB-030307-1 Embryonic structure that gives rise to the intervening zone. TAO:0001342 zebrafish_anatomy ZFA:0001342 presumptive intervening zone ZFA:0001342 Embryonic structure that gives rise to the intervening zone. GOC:mh ORCiD:0000-0001-9114-8737 Boundary between the telencephalon and diencephalon. TAO:0001343 zebrafish_anatomy ZFA:0001343 telencephalon diencephalon boundary ZFA:0001343 Boundary between the telencephalon and diencephalon. GOC:mh ORCiD:0000-0001-9114-8737 The border between the dorsal and ventral thalamus. TAO:0001344 zli zebrafish_anatomy ZFA:0001344 zona limitans intrathalamica ZFA:0001344 The border between the dorsal and ventral thalamus. GOC:mh ORCiD:0000-0001-9114-8737 An bilobed multi-tissue structure lateral to the notochord composed of an epithelium consisting of steroid producing cells interposed with chromaffin cells. The interrenal gland is embedded within the head kidney. The interrenal gland is the zebrafish functional equivalent of the mammalian adrenal cortex. TAO:0001345 zebrafish_anatomy ZFA:0001345 interrenal gland ZFA:0001345 An bilobed multi-tissue structure lateral to the notochord composed of an epithelium consisting of steroid producing cells interposed with chromaffin cells. The interrenal gland is embedded within the head kidney. The interrenal gland is the zebrafish functional equivalent of the mammalian adrenal cortex. GOC:cvs GOC:mh ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-030408-12 ZFIN:ZDB-PUB-061108-13 Multi-tissue structure located in the kidney that develops into the interrenal gland. TAO:0001346 zebrafish_anatomy ZFA:0001346 interrenal primordium ZFA:0001346 Multi-tissue structure located in the kidney that develops into the interrenal gland. GOC:cvs ORCiD:0000-0002-2244-7917 Layer of the optic tectum that is ventral to the stratum opticum and dorsal to the stratum griseum centrale, contains three sublaminae. Has hypothalamic and retinal inputs. TAO:0001347 strata fibrosum et griseum superficiales zebrafish_anatomy SFGS ZFA:0001347 stratum fibrosum et griseum superficiale ZFA:0001347 Layer of the optic tectum that is ventral to the stratum opticum and dorsal to the stratum griseum centrale, contains three sublaminae. Has hypothalamic and retinal inputs. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-081218-37 ZFIN:ZDB-PUB-101011-44 ZFIN:ZDB-PUB-180207-5 strata fibrosum et griseum superficiales Dorsalmost layer of the tectal neuropile that does not receive direct retinal inputs, receives axonal projections from the torus longitudinalis. TAO:0001348 strata marginale stratum fibrosum marginale zebrafish_anatomy ZFA:0001348 stratum marginale ZFA:0001348 Dorsalmost layer of the tectal neuropile that does not receive direct retinal inputs, receives axonal projections from the torus longitudinalis. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180207-5 strata marginale stratum fibrosum marginale ZFIN:ZDB-PUB-180207-5 Portion of tissue that is the most superficial layer of the tectal neuropil closest to the eye target of the retinal axons. TAO:0001349 strata opticum zebrafish_anatomy ZFA:0001349 stratum opticum ZFA:0001349 Portion of tissue that is the most superficial layer of the tectal neuropil closest to the eye target of the retinal axons. ZFIN:ZDB-PUB-101101-16 strata opticum TAO:0001350 zebrafish_anatomy ZFA:0001350 stratum griseum centrale ZFA:0001350 Has hypothalamic inputs. TAO:0001351 strata album centrales zebrafish_anatomy ZFA:0001351 stratum album centrale ZFA:0001351 Has hypothalamic inputs. ZFIN:ZDB-PUB-180207-5 strata album centrales true ZFA:0001352 true ZFA:0001353 true ZFA:0001354 The vascularized fibrous sheath that surrounds the central nervous system. TAO:0001355 meninges meninx primitiva zebrafish_anatomy ZFA:0001355 primitive meninx ZFA:0001355 The vascularized fibrous sheath that surrounds the central nervous system. http://www.archive.org/stream/contributionstoe04carn#page/n3/mode/2up The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. TAO:0001356 nervus terminalis zebrafish_anatomy ZFA:0001356 terminal nerve ZFA:0001356 The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. PMID:15821344 ZFIN:ZDB-PUB-041202-1 Portion of tissue that is ventrolateral to the roof plate and part of the midbrain. TAO:0001357 zebrafish_anatomy ZFA:0001357 alar plate midbrain region ZFA:0001357 Portion of tissue that is ventrolateral to the roof plate and part of the midbrain. ISBN:0444517383 ZFIN:ZDB-PUB-961014-576 Roof plate that is part of the diencephalic region. TAO:0001358 zebrafish_anatomy ZFA:0001358 roof plate diencephalic region ZFA:0001358 Roof plate that is part of the diencephalic region. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 TAO:0001359 zebrafish_anatomy ZFA:0001359 pineal complex ZFA:0001359 An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. TAO:0001360 zebrafish_anatomy ZFA:0001360 parapineal organ ZFA:0001360 An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. ZFIN:ZDB-PUB-030206-1 Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches. TAO:0001361 zebrafish_anatomy arcualia ZFA:0001361 basiventral ZFA:0001361 Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches. GOC:mh ORCiD:0000-0001-9114-8737 Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops. TAO:0001362 lateral process of basiventral parapophyses transverse process zebrafish_anatomy ZFA:0001362 parapophysis ZFA:0001362 Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops. GOC:mh ORCiD:0000-0001-9114-8737 parapophyses The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae (Hoffmann and Britz, 2006). ZFA:0001398 TAO:0001363 Weberian supraneural zebrafish_anatomy ZFA:0001363 neural complex ZFA:0001363 The neural complex is the collective term for the ossified supraneurals (Sn 2 and Sn 3) and their membrane bone extensions above the first four vertebrae (Hoffmann and Britz, 2006). ZFIN:ZDB-PUB-031103-13 Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region. TAO:0001364 haemal spine zebrafish_anatomy ZFA:0001364 hemal spine ZFA:0001364 Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0001365 motor nucleus V nV zebrafish_anatomy ZFA:0001365 trigeminal motor nucleus ZFA:0001365 Tract that extends from the postoptic commissure through a curved trajectory in the diencephalon into the ventral midbrain. In the anterior diencephalon the TOP is a single tract but caudally the axons of the TPOC diverge and tend to grow in distinct parallel bundles. The more dorsal bundles extend in the dorsolateral tegmentum, the ventral bundles of the TPOC merge into the DLF in the hindbrain. TAO:0001366 TPOC zebrafish_anatomy ZFA:0001366 tract of the postoptic commissure ZFA:0001366 Tract that extends from the postoptic commissure through a curved trajectory in the diencephalon into the ventral midbrain. In the anterior diencephalon the TOP is a single tract but caudally the axons of the TPOC diverge and tend to grow in distinct parallel bundles. The more dorsal bundles extend in the dorsolateral tegmentum, the ventral bundles of the TPOC merge into the DLF in the hindbrain. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-167 The boundary between the diencephalon and the mesencephalon. TAO:0001367 diencephalic-mesencephalic boundary zebrafish_anatomy ZFA:0001367 forebrain midbrain boundary ZFA:0001367 The boundary between the diencephalon and the mesencephalon. GOC:mh ORCiD:0000-0001-9114-8737 Embryonic structure that gives rise to the forebrain midbrain boundary. TAO:0001368 zebrafish_anatomy ZFA:0001368 presumptive forebrain midbrain boundary ZFA:0001368 Embryonic structure that gives rise to the forebrain midbrain boundary. GOC:mh ORCiD:0000-0001-9114-8737 Pancreatic bud that develops from a ridge on the ventral side of the intestinal bulb primordium. TAO:0001369 exocrine anlage rostral anlage ventral anterior bud ventral pancreatic anlage zebrafish_anatomy ZFA:0001369 anterior pancreatic bud ZFA:0001369 Pancreatic bud that develops from a ridge on the ventral side of the intestinal bulb primordium. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-030902-16 exocrine anlage ZFIN:ZDB-PUB-050623-3 ventral anterior bud ZFIN:ZDB-PUB-030902-16 Pancreatic bud that forms dorsal and adjacent to the developing intestine. TAO:0001370 caudal anlage dorsal pancreatic anlage zebrafish_anatomy dorsal posterior bud ZFA:0001370 Furthermore, zebrafish exocrine progenitors appear to arise from endoderm rostral to the gut tube, which it subsequently joins, rather than as an extension of the epithelium of the main duct. Thus, we argue against a classical model (Field et al., 2003) in which the zebrafish exocrine pancreas buds from either a rod of pre-intestinal endoderm or the gut tube which in zebrafish gives rise to the intestine (Wallace and Pack, 2003). ZDB-PUB-050623-3. posterior pancreatic bud ZFA:0001370 Pancreatic bud that forms dorsal and adjacent to the developing intestine. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-030902-16 dorsal posterior bud ZFIN:ZDB-PUB-030902-16 System responsible for the production and movement of pancreatic hormones and enzymes. TAO:0001371 zebrafish_anatomy ZFA:0001371 pancreatic system ZFA:0001371 System responsible for the production and movement of pancreatic hormones and enzymes. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Duct that collects and carries secretions of the exocrine pancreas. TAO:0001372 zebrafish_anatomy ZFA:0001372 pancreatic duct ZFA:0001372 Duct that collects and carries secretions of the exocrine pancreas. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Cells that initially are located adjacent to the spinal cord and notochord that migrate from their initial medial position radially through the myotome to the lateral surface of the somites. TAO:0001373 migratory slow muscle precursor cells zebrafish_anatomy ZFA:0001373 migratory slow muscle precursor cell ZFA:0001373 Cells that initially are located adjacent to the spinal cord and notochord that migrate from their initial medial position radially through the myotome to the lateral surface of the somites. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961219-12 migratory slow muscle precursor cells Myocardium of the heart atrium. TAO:0001374 zebrafish_anatomy ZFA:0001374 atrial myocardium ZFA:0001374 Myocardium of the heart atrium. GOC:cvs ORCiD:0000-0002-2244-7917 A heart valve located between the ventricle and bulbus arteriosus. TAO:0001375 bulboventricular valve zebrafish_anatomy ZFA:0001375 ventriculo bulbo valve ZFA:0001375 A heart valve located between the ventricle and bulbus arteriosus. GOC:cvs ORCiD:0000-0002-2244-7917 Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping. ZFA:0000147 TAO:0001376 presumptive epidermis zebrafish_anatomy ZFA:0001376 presumptive ectoderm ZFA:0001376 Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping. ZFIN:ZDB-PUB-961014-608 Presumptive structure fated to become mesoderm. Determined by fate mapping. TAO:0001377 zebrafish_anatomy ZFA:0001377 presumptive mesoderm ZFA:0001377 Presumptive structure fated to become mesoderm. Determined by fate mapping. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Region of the hypoblast that is located along the rostral-caudal axis of the embryo. TAO:0001378 zebrafish_anatomy ZFA:0001378 axial hypoblast ZFA:0001378 Region of the hypoblast that is located along the rostral-caudal axis of the embryo. GOC:cvs ORCID:0000-0002-2244-7917 TAO:0001379 zebrafish_anatomy ZFA:0001379 pharyngeal ectoderm ZFA:0001379 true ZFA:0001380 Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present. TAO:0001381 hypohyals zebrafish_anatomy ZFA:0001381 hypohyal bone ZFA:0001381 Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present. GOC:mh ORCiD:0000-0001-9114-8737 hypohyals Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm). TAO:0001382 epibranchial uncinate processes zebrafish_anatomy ZFA:0001382 epibranchial uncinate process ZFA:0001382 Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm). GOC:mh ORCiD:0000-0001-9114-8737 epibranchial uncinate processes Surface structure that develops into a paired fin. TAO:0001383 fin buds zebrafish_anatomy ZFA:0001383 fin bud ZFA:0001383 Surface structure that develops into a paired fin. GOC:mh ORCiD:0000-0001-9114-8737 fin buds Fin bud that develops into the pelvic fin. TAO:0001384 pelvic fin buds zebrafish_anatomy ZFA:0001384 pelvic fin bud ZFA:0001384 Fin bud that develops into the pelvic fin. GOC:cvs ORCiD:0000-0002-2244-7917 pelvic fin buds Apical ectodermal ridge that is part of the pelvic fin bud. TAO:0001385 apical ectodermal ridge pelvic fin buds zebrafish_anatomy ZFA:0001385 apical ectodermal ridge pelvic fin bud ZFA:0001385 Apical ectodermal ridge that is part of the pelvic fin bud. GOC:cvs ORCiD:0000-0002-2244-7917 apical ectodermal ridge pelvic fin buds Mesoderm part of pelvic fin bud. TAO:0001386 mesoderm pelvic fin buds zebrafish_anatomy ZFA:0001386 mesoderm pelvic fin bud ZFA:0001386 Mesoderm part of pelvic fin bud. GOC:cvs ORCiD:0000-0002-2244-7917 mesoderm pelvic fin buds Skeleton that supports the pelvic fin. The skeleton consists of consists of supporting endochondral radials and dermal fin rays or lepidotrichia. TAO:0001387 zebrafish_anatomy ZFA:0001387 pelvic fin skeleton ZFA:0001387 Skeleton that supports the pelvic fin. The skeleton consists of consists of supporting endochondral radials and dermal fin rays or lepidotrichia. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0001388 epithelial mesenchymal boundarys zebrafish_anatomy ZFA:0001388 epithelial mesenchymal boundary ZFA:0001388 epithelial mesenchymal boundarys Epithelium of the regenerating fin that is formed as part of the healing process. TAO:0001389 epidermal cap wound epidermis wound epithelium zebrafish_anatomy ZFA:0001389 regeneration epithelium ZFA:0001389 Epithelium of the regenerating fin that is formed as part of the healing process. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Embryonic structure that develops from the pancreas primordium and develops into the pancreas. At Prim-5 the buds are located between the dorsal aorta and the posterior cardinal vein. TAO:0001390 pancreatic buds zebrafish_anatomy ZFA:0001390 pancreatic bud ZFA:0001390 Embryonic structure that develops from the pancreas primordium and develops into the pancreas. At Prim-5 the buds are located between the dorsal aorta and the posterior cardinal vein. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-191011-21 pancreatic buds The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system. TAO:0001391 anterior lateral line ganglia zebrafish_anatomy ZFA:0001391 anterior lateral line ganglion ZFA:0001391 The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system. GOC:ymb ORCiD:0000-0002-9900-7880 anterior lateral line ganglia Lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996). TAO:0001392 basipophysis 1 lateral process 1 zebrafish_anatomy ZFA:0001392 parapophysis 1 ZFA:0001392 Lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996). GOC:mh ORCiD:0000-0001-9114-8737 Lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996). TAO:0001393 basipophysis lateral process 2 zebrafish_anatomy ZFA:0001393 parapophysis 2 ZFA:0001393 Lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996). GOC:mh ORCiD:0000-0001-9114-8737 Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal. TAO:0001394 zebrafish_anatomy ZFA:0001394 neural arch 3 ZFA:0001394 Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal. GOC:mh ORCiD:0000-0001-9114-8737 Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex. TAO:0001395 zebrafish_anatomy ZFA:0001395 neural arch 4 ZFA:0001395 Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex. GOC:mh ORCiD:0000-0001-9114-8737 The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface. TAO:0001396 zebrafish_anatomy ZFA:0001396 parapophysis/rib ZFA:0001396 The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface. GOC:mh ORCiD:0000-0001-9114-8737 Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish. TAO:0001397 post-Weberian supraneurals zebrafish_anatomy ZFA:0001397 post-Weberian supraneural ZFA:0001397 Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-031103-13 post-Weberian supraneurals true ZFA:0001398 Cartilage that is the dorsal component of the first pharyngeal arch. It is roughly triangular with slightly concave dorsal edges and convex ventral edges. The anteroventral corner gives rise the quadrate and articulates with the posterior end of Meckel's cartilage. The anterodorsal tip articulates with the lateral edge of the ethmoid plate and the posteroventral edge articulates with the anterodorsal edge of the hyosymplectic. TAO:0001399 dorsal mandibular cartilage pterygoquadrate quadrate cartilage zebrafish_anatomy ZFA:0001399 palatoquadrate cartilage ZFA:0001399 Cartilage that is the dorsal component of the first pharyngeal arch. It is roughly triangular with slightly concave dorsal edges and convex ventral edges. The anteroventral corner gives rise the quadrate and articulates with the posterior end of Meckel's cartilage. The anterodorsal tip articulates with the lateral edge of the ethmoid plate and the posteroventral edge articulates with the anterodorsal edge of the hyosymplectic. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch. TAO:0001400 zebrafish_anatomy ZFA:0001400 ceratohyal cartilage ZFA:0001400 Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0001401 dorsal visceral arch 2 zebrafish_anatomy ZFA:0001401 dorsal hyoid arch ZFA:0001401 TAO:0001402 ventral visceral arch 2 zebrafish_anatomy ZFA:0001402 ventral hyoid arch ZFA:0001402 Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anteriolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal. TAO:0001403 zebrafish_anatomy supra-ethmoid ZFA:0001403 supraethmoid ZFA:0001403 Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anteriolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal. GOC:mh ORCiD:0000-0001-9114-8737 Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms. TAO:0001404 pre-ethmoid preethmoid bones zebrafish_anatomy ZFA:0001404 preethmoid bone ZFA:0001404 Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms. GOC:mh ORCiD:0000-0001-9114-8737 preethmoid bones Bilaterally paired neurocranium cartilage which is initially plate-like and formed from the anterior fusion between the bilaterally paired trabecula cranii. It grows dorsally between the laminae orbitonasales to attain a complex shape. TAO:0001405 ethmoid plate zebrafish_anatomy ZFA:0001405 ethmoid cartilage ZFA:0001405 Bilaterally paired neurocranium cartilage which is initially plate-like and formed from the anterior fusion between the bilaterally paired trabecula cranii. It grows dorsally between the laminae orbitonasales to attain a complex shape. GOC:mh ORCiD:0000-0001-9114-8737 Small median unpaired dermal sesamoid bone in the premaxillary-ethmoid ligament between the mesethmoid and the premaxilla that enhances the protractability of the upper jaw. It forms in the premaxillary-ethmoid ligament. The kinethmoid arose de novo in the ancestor of Cypriniformes, the only group within Ostariophysi, in which it is found (Fink and Fink, 1981). TAO:0001406 zebrafish_anatomy ZFA:0001406 kinethmoid bone ZFA:0001406 Small median unpaired dermal sesamoid bone in the premaxillary-ethmoid ligament between the mesethmoid and the premaxilla that enhances the protractability of the upper jaw. It forms in the premaxillary-ethmoid ligament. The kinethmoid arose de novo in the ancestor of Cypriniformes, the only group within Ostariophysi, in which it is found (Fink and Fink, 1981). GOC:mh ORCiD:0000-0001-9114-8737 Plate like dermal bone, variable in size, though usually one of the smallest in the series. Bears 2-3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969). TAO:0001407 zebrafish_anatomy ZFA:0001407 infraorbital 2 ZFA:0001407 Plate like dermal bone, variable in size, though usually one of the smallest in the series. Bears 2-3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969). GOC:mh ORCiD:0000-0001-9114-8737 Plate like dermal bone, variable in size, but usually largest in the series. Usually fused with IO4 (eg. Opsariichthys, Nelson (1969)). Usually bears 3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969). TAO:0001408 zebrafish_anatomy ZFA:0001408 infraorbital 3 ZFA:0001408 Plate like dermal bone, variable in size, but usually largest in the series. Usually fused with IO4 (eg. Opsariichthys, Nelson (1969)). Usually bears 3 neuromast pores enclosed within the infraorbital canal (Nelson, 1969). GOC:mh ORCiD:0000-0001-9114-8737 Plate like dermal bone. Usually fused with infraorbital 3. TAO:0001409 zebrafish_anatomy ZFA:0001409 infraorbital 4 ZFA:0001409 Plate like dermal bone. Usually fused with infraorbital 3. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical cluster that is a anteriolateral part of the cranium and structurally supports the eye. TAO:0001410 zebrafish_anatomy ZFA:0001410 orbital region ZFA:0001410 Anatomical cluster that is a anteriolateral part of the cranium and structurally supports the eye. GOC:mh ORCiD:0000-0001-9114-8737 A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid. The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye. TAO:0001411 scleral ossicle sclerotic bones zebrafish_anatomy ZFA:0001411 sclerotic bone ZFA:0001411 A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid. The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070629-20 sclerotic bones Cartilage bone that contacts the pterotic anteriorly, the supraoccipital and parietal dorsally, and the exoccipital ventrally. The epiotic enclose the posterior semicircular canal of the inner ear and contribute to the hind margin of the cranium. ZFA:0000659 TAO:0001412 epioccipital zebrafish_anatomy ZFA:0001412 epiotic ZFA:0001412 Cartilage bone that contacts the pterotic anteriorly, the supraoccipital and parietal dorsally, and the exoccipital ventrally. The epiotic enclose the posterior semicircular canal of the inner ear and contribute to the hind margin of the cranium. GOC:mh ORCiD:0000-0001-9114-8737 true ZFA:0001413 Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyle. TAO:0001414 basicranial region zebrafish_anatomy ZFA:0001414 occipital region ZFA:0001414 Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyle. GOC:mh ORCiD:0000-0001-9114-8737 Second radial of the pelvic fin. TAO:0001415 pelvic radials 2 zebrafish_anatomy ZFA:0001415 pelvic radial 2 ZFA:0001415 Second radial of the pelvic fin. GOC:mh ORCiD:0000-0001-9114-8737 pelvic radials 2 Third radial of the pelvic fin. TAO:0001416 pelvic radials 3 zebrafish_anatomy ZFA:0001416 pelvic radial 3 ZFA:0001416 Third radial of the pelvic fin. GOC:mh ORCiD:0000-0001-9114-8737 pelvic radials 3 First radial of the pelvic fin. TAO:0001417 pelvic radials 1 zebrafish_anatomy ZFA:0001417 pelvic radial 1 ZFA:0001417 First radial of the pelvic fin. GOC:mh ORCiD:0000-0001-9114-8737 pelvic radials 1 Lepidotrichium which is part of the dorsal fin. Bony, bilaterally paired segmented dermal ossification extending distally from the endoskeletal supports. They develop around actinotrichia as part of the dermal exoskeleton. TAO:0001418 dorsal fin lepidotrichia dorsal fin ray zebrafish_anatomy ZFA:0001418 dorsal fin lepidotrichium ZFA:0001418 Lepidotrichium which is part of the dorsal fin. Bony, bilaterally paired segmented dermal ossification extending distally from the endoskeletal supports. They develop around actinotrichia as part of the dermal exoskeleton. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 dorsal fin lepidotrichia A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18. TAO:0001419 dorsal fin support zebrafish_anatomy ZFA:0001419 dorsal fin pterygiophore ZFA:0001419 A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21. TAO:0001420 zebrafish_anatomy anal fin radial ZFA:0001420 anal fin pterygiophore ZFA:0001420 A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21. GOC:cvs ORCiD:0000-0002-2244-7917 Lepidotrichium which is part of the anal fin. TAO:0001421 anal fin lepidotrichia anal fin ray zebrafish_anatomy ZFA:0001421 anal fin lepidotrichium ZFA:0001421 Lepidotrichium which is part of the anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 anal fin lepidotrichia Bilaterally paired large cartilage that articulates with the chondrocranium dorsally, the opercle posteriorly, and the palatoquadrate cartilage anteriorly. TAO:0001422 hyomandibular cartilage zebrafish_anatomy ZFA:0001422 hyosymplectic cartilage ZFA:0001422 Bilaterally paired large cartilage that articulates with the chondrocranium dorsally, the opercle posteriorly, and the palatoquadrate cartilage anteriorly. GOC:mh ORCiD:0000-0001-9114-8737 Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones. TAO:0001423 parachordal cartilages zebrafish_anatomy ZFA:0001423 parachordal cartilage ZFA:0001423 Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones. GOC:mh ORCiD:0000-0001-9114-8737 parachordal cartilages Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones. ZFA:0000377 TAO:0001424 chondocranium zebrafish_anatomy neurocranium ZFA:0001424 chondrocranium ZFA:0001424 Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0001425 basal plate cartilages zebrafish_anatomy ZFA:0001425 basal plate cartilage ZFA:0001425 basal plate cartilages Nares that form at 40-44dpf that open to the posterior region of the olfactory pit allowing water to exit the pit. TAO:0001426 excurrent nostril posterior nares zebrafish_anatomy ZFA:0001426 posterior naris ZFA:0001426 Nares that form at 40-44dpf that open to the posterior region of the olfactory pit allowing water to exit the pit. ZFIN:ZDB-PUB-961014-399 excurrent nostril ZFIN:ZDB-PUB-961014-399 posterior nares Nares that form at 40-44dpf that open to the anterior region of the olfactory pit allowing water to enter the pit. TAO:0001427 anterior nares incurrent nostril zebrafish_anatomy ZFA:0001427 anterior naris ZFA:0001427 Nares that form at 40-44dpf that open to the anterior region of the olfactory pit allowing water to enter the pit. ZFIN:ZDB-PUB-961014-399 anterior nares incurrent nostril ZFIN:ZDB-PUB-961014-399 The highly folded olfactory epithelium. TAO:0001428 olfactory rosettes zebrafish_anatomy ZFA:0001428 Olfactory epithelium may be part of olfactory rosette. The epithelium exists before becoming folded into the rosette. olfactory rosette ZFA:0001428 The highly folded olfactory epithelium. GOC:mh ISBN:9789812388216 ORCiD:0000-0001-9114-8737 olfactory rosettes Ventral hindbrain nuclei just caudal to the interpeduncular nucleus. TAO:0001429 median raphe nucleus zebrafish_anatomy ZFA:0001429 raphe nucleus ZFA:0001429 Ventral hindbrain nuclei just caudal to the interpeduncular nucleus. ZFIN:ZDB-PUB-100202-7 median raphe nucleus ZFIN:ZDB-PUB-100202-7 A duct connecting the esophagus to the posterior chamber of the swim bladder. TAO:0001430 zebrafish_anatomy ZFA:0001430 pneumatic duct ZFA:0001430 A duct connecting the esophagus to the posterior chamber of the swim bladder. ZFIN:ZDB-PUB-060306-11 TAO:0001431 zebrafish_anatomy ZFA:0001431 primitive olfactory epithelium ZFA:0001431 Sclerotic bone that is located anterior to the eye. TAO:0001432 anterior sclerotic bones zebrafish_anatomy ZFA:0001432 anterior sclerotic bone ZFA:0001432 Sclerotic bone that is located anterior to the eye. GOC:mh ORCiD:0000-0001-9114-8737 anterior sclerotic bones Sclerotic bone that is located posterior to the eye. TAO:0001433 posterior sclerotic bones zebrafish_anatomy ZFA:0001433 posterior sclerotic bone ZFA:0001433 Sclerotic bone that is located posterior to the eye. GOC:mh ORCiD:0000-0001-9114-8737 posterior sclerotic bones Floor plate that is part of the neural tube. TAO:0001434 zebrafish_anatomy ZFA:0001434 floor plate neural tube ZFA:0001434 Floor plate that is part of the neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of tissue on the side of the lumen of the neural tube. TAO:0001435 zebrafish_anatomy ZFA:0001435 lateral wall neural tube ZFA:0001435 Portion of tissue on the side of the lumen of the neural tube. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Roof plate that is part of the neural tube. TAO:0001436 zebrafish_anatomy ZFA:0001436 roof plate neural tube region ZFA:0001436 Roof plate that is part of the neural tube. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. TAO:0001437 zebrafish_anatomy ZFA:0001437 ductus communicans ZFA:0001437 The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. ZFIN:ZDB-PUB-060306-11 Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities. TAO:0001438 body cavity zebrafish_anatomy ZFA:0001438 coelom ZFA:0001438 Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities. GOC:cvs ORCiD:0000-0002-2244-7917 Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity. CARO:0000011 TAO:0001439 anatomical systems zebrafish_anatomy ZFA:0001439 anatomical system ZFA:0001439 Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity. GOC:mh ORCiD:0000-0001-9114-8737 anatomical systems The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain. TAO:0001440 zebrafish_anatomy ZFA:0001440 rhombic lip ZFA:0001440 The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain. GOC:cvs ORCiD:0000-0002-2244-7917 Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus. TAO:0001441 zebrafish_anatomy ZFA:0001441 lower rhombic lip ZFA:0001441 Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus. GOC:cvs ORCiD:0000-0002-2244-7917 Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary. TAO:0001442 zebrafish_anatomy ZFA:0001442 upper rhombic lip ZFA:0001442 Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary. GOC:cvs ORCiD:0000-0002-2244-7917 A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier. TAO:0001443 zebrafish_anatomy ZFA:0001443 choroid plexus ZFA:0001443 A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier. GOC:cvs ORCiD:0000-0002-2244-7917 Choroid plexus that is part of the third ventricle. TAO:0001444 diencephalic choroid plexus zebrafish_anatomy ZFA:0001444 choroid plexus third ventricle ZFA:0001444 Choroid plexus that is part of the third ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Choroid plexus that is part of the tectal ventricle. TAO:0001445 choroid plexus tectal ventricles zebrafish_anatomy ZFA:0001445 choroid plexus tectal ventricle ZFA:0001445 Choroid plexus that is part of the tectal ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 choroid plexus tectal ventricles Choroid plexus that is part of the fourth ventricle. TAO:0001446 zebrafish_anatomy ZFA:0001446 choroid plexus fourth ventricle ZFA:0001446 Choroid plexus that is part of the fourth ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Choroid plexus that is part of the telencephalic ventricle. TAO:0001447 zebrafish_anatomy ZFA:0001447 choroid plexus telencephalic ventricle ZFA:0001447 Choroid plexus that is part of the telencephalic ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Glands that produce calcitonin. In adult fish the glands lie as two groups of follicles at the transverse septum close to the sinus venosus. TAO:0001448 ultimobranchial bodies zebrafish_anatomy ZFA:0001448 ultimobranchial body ZFA:0001448 Glands that produce calcitonin. In adult fish the glands lie as two groups of follicles at the transverse septum close to the sinus venosus. ZFIN:ZDB-PUB-060517-11 ultimobranchial bodies Mesenchyme that is part of the pelvic fin. TAO:0001449 mesenchyme pelvic fins zebrafish_anatomy ZFA:0001449 mesenchyme pelvic fin ZFA:0001449 Mesenchyme that is part of the pelvic fin. GOC:mh ORCiD:0000-0001-9114-8737 mesenchyme pelvic fins Apical ectodermal ridge that is part of the pelvic fin. TAO:0001450 apical ectodermal ridge pelvic fins zebrafish_anatomy ZFA:0001450 apical ectodermal ridge pelvic fin ZFA:0001450 Apical ectodermal ridge that is part of the pelvic fin. GOC:mh ORCiD:0000-0001-9114-8737 apical ectodermal ridge pelvic fins A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. TAO:0001451 zebrafish_anatomy ZPA ZFA:0001451 zone of polarizing activity pectoral fin bud ZFA:0001451 A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. ZFIN:ZDB-PUB-060616-55 A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. TAO:0001452 zebrafish_anatomy ZPA ZFA:0001452 zone of polarizing activity pelvic fin bud ZFA:0001452 A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. ZFIN:ZDB-PUB-060616-55 Embryonic region that develops into the pectoral fin bud. TAO:0001453 pectoral fin fields zebrafish_anatomy ZFA:0001453 pectoral fin field ZFA:0001453 Embryonic region that develops into the pectoral fin bud. GOC:mh ORCiD:0000-0001-9114-8737 pectoral fin fields Portion of tissue in the pelvic region that develops into the pelvic fin bud. TAO:0001454 pelvic fin fields zebrafish_anatomy ZFA:0001454 pelvic fin field ZFA:0001454 Portion of tissue in the pelvic region that develops into the pelvic fin bud. GOC:mh ORCiD:0000-0001-9114-8737 pelvic fin fields The cartilage from which both the scapula and coracoid develop. TAO:0001455 coraco-scapular cartilage scapulo-coracoid cartilage zebrafish_anatomy ZFA:0001455 scapulocoracoid ZFA:0001455 The cartilage from which both the scapula and coracoid develop. GOC:cvs ORCiD:0000-0002-2244-7917 A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998). TAO:0001456 fin plate cartilage zebrafish_anatomy ZFA:0001456 pectoral fin endoskeletal disc ZFA:0001456 A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998). GOC:cvs ORCiD:0000-0002-2244-7917 Cartilage which is part of the axial skeleton. TAO:0001457 postcranial axial cartilages zebrafish_anatomy ZFA:0001457 postcranial axial cartilage ZFA:0001457 Cartilage which is part of the axial skeleton. GOC:mh ORCiD:0000-0001-9114-8737 postcranial axial cartilages Cartilage which is part of the cranium. TAO:0001458 cranial cartilages zebrafish_anatomy ZFA:0001458 cranial cartilage ZFA:0001458 Cartilage which is part of the cranium. GOC:mh ORCiD:0000-0001-9114-8737 cranial cartilages Cartilage which is part of the pelvic fin. TAO:0001459 pelvic fin cartilages zebrafish_anatomy ZFA:0001459 pelvic fin cartilage ZFA:0001459 Cartilage which is part of the pelvic fin. GOC:mh ORCiD:0000-0001-9114-8737 pelvic fin cartilages TAO:0001460 pharyngeal arch cartilages splanchnocranium cartilage zebrafish_anatomy ZFA:0001460 pharyngeal arch cartilage ZFA:0001460 pharyngeal arch cartilages Cartilage that is part of the chondrocranium. TAO:0001461 neurocranium cartilage zebrafish_anatomy ZFA:0001461 chondrocranium cartilage ZFA:0001461 Cartilage that is part of the chondrocranium. GOC:cvs ORCiD:0000-0002-2244-7917 Anatomical surface separating somites. TAO:0001462 somite border cell zebrafish_anatomy somite boundary ZFA:0001462 somite border ZFA:0001462 Anatomical surface separating somites. GOC:mh ORCiD:0000-0001-9114-8737 somite border cell Surface structure composed of an array of melanophores arranged in a stripe. Stripes are oriented from rostral to caudal. TAO:0001463 melanophore stripes zebrafish_anatomy ZFA:0001463 melanophore stripe ZFA:0001463 Surface structure composed of an array of melanophores arranged in a stripe. Stripes are oriented from rostral to caudal. GOC:cvs ORCiD:0000-0002-2244-7917 melanophore stripes The layer within the retina where the photoreceptor cell bodies reside. TAO:0001464 retinal outer nuclear layers zebrafish_anatomy ZFA:0001464 retinal outer nuclear layer ZFA:0001464 The layer within the retina where the photoreceptor cell bodies reside. GOC:mh ORCiD:0000-0001-9114-8737 retinal outer nuclear layers Layer of the retina composed of the inner segments of the photoreceptor cells. TAO:0001465 photoreceptor inner segment layers zebrafish_anatomy ZFA:0001465 photoreceptor inner segment layer ZFA:0001465 Layer of the retina composed of the inner segments of the photoreceptor cells. GOC:mh ORCiD:0000-0001-9114-8737 photoreceptor inner segment layers Layer of the retina composed of the outer segments of the photoreceptor cells. The photoreceptor outer segment is a specialized primary cilium consisting of a microtubule-based axoneme and regular stacks of membrane folds or disks containing the photopigments (opsins) required for the phototransduction cascade. TAO:0001466 photoreceptor outer segment layers zebrafish_anatomy ZFA:0001466 photoreceptor outer segment layer ZFA:0001466 Layer of the retina composed of the outer segments of the photoreceptor cells. The photoreceptor outer segment is a specialized primary cilium consisting of a microtubule-based axoneme and regular stacks of membrane folds or disks containing the photopigments (opsins) required for the phototransduction cascade. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-110811-12 photoreceptor outer segment layers TAO:0001467 zebrafish_anatomy ZFA:0001467 pharyngeal mesoderm ZFA:0001467 The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. TAO:0001468 zebrafish_anatomy ZFA:0001468 anterior lateral line system ZFA:0001468 The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. GOC:ymb ORCiD:0000-0002-9900-7880 The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear. TAO:0001469 lateral lines zebrafish_anatomy ZFA:0001469 lateral line ZFA:0001469 The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear. DOI:10.1159/000115896 GOC:ymb ORCiD:0000-0002-9900-7880 lateral lines The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear. TAO:0001470 anterior lateral lines zebrafish_anatomy ZFA:0001470 anterior lateral line ZFA:0001470 The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 anterior lateral lines The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. TAO:0001471 zebrafish_anatomy ZFA:0001471 posterior lateral line system ZFA:0001471 The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. GOC:ymb ORCiD:0000-0002-9900-7880 Neuromast that is part of the anterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0001472 neuromast anterior zebrafish_anatomy ZFA:0001472 anterior lateral line neuromast ZFA:0001472 Neuromast that is part of the anterior lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. TAO:0001473 deep blastomeres zebrafish_anatomy ZFA:0001473 deep blastomere ZFA:0001473 Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. ZFIN:ZDB-PUB-961014-576 deep blastomeres zebrafish_anatomy ZFA:0001474 presumptive cardinal organ true ZFA:0001474 zebrafish_anatomy ZFA:0001475 presumptive organ true ZFA:0001475 zebrafish_anatomy ZFA:0001476 presumptive organ system true ZFA:0001476 Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. CARO:0000043 TAO:0001477 zebrafish_anatomy ZFA:0001477 portion of tissue ZFA:0001477 Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical group that has its parts adjacent to one another. CARO:0000041 TAO:0001478 zebrafish_anatomy ZFA:0001478 anatomical cluster ZFA:0001478 Anatomical group that has its parts adjacent to one another. GOC:mh ORCiD:0000-0001-9114-8737 Cranial nerves that carry afferent and efferent fibers for the lateral line system. TAO:0001479 lateral line nerves zebrafish_anatomy ZFA:0001479 lateral line nerve ZFA:0001479 Cranial nerves that carry afferent and efferent fibers for the lateral line system. GOC:ymb ORCiD:0000-0002-9900-7880 lateral line nerves Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts. TAO:0001480 anterodorsal lateral line nerve dorsal anterior lateral line nerves zebrafish_anatomy ZFA:0001480 dorsal anterior lateral line nerve ZFA:0001480 Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-000523-3 dorsal anterior lateral line nerves Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts. TAO:0001481 anteroventral lateral line nerve ventral anterior lateral line nerves zebrafish_anatomy ZFA:0001481 ventral anterior lateral line nerve ZFA:0001481 Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts. GOC:ymb ORCiD:0000-0002-9900-7880 ventral anterior lateral line nerves Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line. TAO:0001482 middle lateral line nerves zebrafish_anatomy ZFA:0001482 middle lateral line nerve ZFA:0001482 Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line. GOC:ymb ORCiD:0000-0002-9900-7880 middle lateral line nerves The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line. TAO:0001483 middle lateral line ganglia zebrafish_anatomy ZFA:0001483 middle lateral line ganglion ZFA:0001483 The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line. GOC:ymb ORCiD:0000-0002-9900-7880 middle lateral line ganglia Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. TAO:0001484 superficial blastomeres zebrafish_anatomy ZFA:0001484 superficial blastomere ZFA:0001484 Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. ZFIN:ZDB-PUB-961014-576 superficial blastomeres Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. CARO:0000065 TAO:0001485 basal laminae zebrafish_anatomy ZFA:0001485 basal lamina ZFA:0001485 Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. GOC:cvs ORCiD:0000-0002-2244-7917 basal laminae Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. CARO:0000066 TAO:0001486 zebrafish_anatomy ZFA:0001486 epithelium ZFA:0001486 Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. GOC:mh ORCiD:0000-0001-9114-8737 Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. CARO:0000004 TAO:0001487 zebrafish_anatomy ZFA:0001487 portion of organism substance ZFA:0001487 Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. CARO:0000055 TAO:0001488 multi-tissue structures zebrafish_anatomy ZFA:0001488 multi-tissue structure ZFA:0001488 Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. GOC:mh ORCiD:0000-0001-9114-8737 multi-tissue structures Multi-tissue structure that is part of a compound organ. CARO:0000019 TAO:0001489 compound organ components zebrafish_anatomy ZFA:0001489 compound organ component ZFA:0001489 Multi-tissue structure that is part of a compound organ. GOC:mh ORCiD:0000-0001-9114-8737 compound organ components Compound organ that contains one or more macroscopic anatomical spaces. CARO:0000072 TAO:0001490 cavitated compound organs zebrafish_anatomy ZFA:0001490 cavitated compound organ ZFA:0001490 Compound organ that contains one or more macroscopic anatomical spaces. GOC:mh ORCiD:0000-0001-9114-8737 cavitated compound organs Compound organ that does not contain macroscopic anatomical spaces. CARO:0000074 TAO:0001491 solid compound organs zebrafish_anatomy ZFA:0001491 solid compound organ ZFA:0001491 Compound organ that does not contain macroscopic anatomical spaces. GOC:mh ORCiD:0000-0001-9114-8737 solid compound organs Multi-tissue structure that is not part of a compound organ. CARO:0000021 TAO:0001492 simple organs zebrafish_anatomy ZFA:0001492 simple organ ZFA:0001492 Multi-tissue structure that is not part of a compound organ. GOC:mh ORCiD:0000-0001-9114-8737 simple organs Epithelium that consists of epithelial cells not arranged in one or more layers. CARO:0000071 TAO:0001493 atypical epithelia zebrafish_anatomy ZFA:0001493 atypical epithelium ZFA:0001493 Epithelium that consists of epithelial cells not arranged in one or more layers. GOC:mh ORCiD:0000-0001-9114-8737 atypical epithelia Epithelium that consists of more than one layer of epithelial cells. CARO:0000069 TAO:0001494 zebrafish_anatomy ZFA:0001494 multilaminar epithelium ZFA:0001494 Epithelium that consists of more than one layer of epithelial cells. GOC:mh ORCiD:0000-0001-9114-8737 Epithelium that consists of a single layer of epithelial cells. CARO:0000073 TAO:0001495 unilaminar epithelia zebrafish_anatomy ZFA:0001495 unilaminar epithelium ZFA:0001495 Epithelium that consists of a single layer of epithelial cells. GOC:mh ORCiD:0000-0001-9114-8737 unilaminar epithelia Unilaminar epithelium that consists of a single layer of columnar cells. CARO:0000068 TAO:0001496 simple columnar epithelia zebrafish_anatomy ZFA:0001496 simple columnar epithelium ZFA:0001496 Unilaminar epithelium that consists of a single layer of columnar cells. GOC:mh ORCiD:0000-0001-9114-8737 simple columnar epithelia Unilaminar epithelium that consists of a single layer of cuboidal cells. CARO:0000067 TAO:0001497 simple cuboidal epithelia zebrafish_anatomy ZFA:0001497 simple cuboidal epithelium ZFA:0001497 Unilaminar epithelium that consists of a single layer of cuboidal cells. GOC:mh ORCiD:0000-0001-9114-8737 simple cuboidal epithelia Unilaminar epithelium that consists of a single layer of squamous cells. CARO:0000070 TAO:0001498 simple squamous epithelia zebrafish_anatomy ZFA:0001498 simple squamous epithelium ZFA:0001498 Unilaminar epithelium that consists of a single layer of squamous cells. GOC:mh ORCiD:0000-0001-9114-8737 simple squamous epithelia Simple columnar epithelium that lines the esophagus. TAO:0001499 zebrafish_anatomy ZFA:0001499 esophageal epithelium ZFA:0001499 Simple columnar epithelium that lines the esophagus. ZFIN:ZDB-PUB-070426-1 Bilaterally paired cartilage encasing the semicircular canals of the inner ear. TAO:0001500 otic capsule zebrafish_anatomy ZFA:0001500 auditory capsule ZFA:0001500 Bilaterally paired cartilage encasing the semicircular canals of the inner ear. GOC:ymb ORCiD:0000-0002-9900-7880 Skeletal element that is composed of cartilage tissue and may be permanent or transient. TAO:0001501 VSAO:0000000 cartilages zebrafish_anatomy ZFA:0001501 cartilage element ZFA:0001501 Skeletal element that is composed of cartilage tissue and may be permanent or transient. VSAO:curator cartilages Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar. TAO:0001502 zebrafish_anatomy ZFA:0001502 epiphyseal bar ZFA:0001502 Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar. GOC:mh ORCiD:0000-0001-9114-8737 Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anteriolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially. TAO:0001503 laminas orbitonasalis zebrafish_anatomy ZFA:0001503 lamina orbitonasalis ZFA:0001503 Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anteriolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially. GOC:mh ORCiD:0000-0001-9114-8737 laminas orbitonasalis Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf). TAO:0001504 occipital arch cartilages zebrafish_anatomy ZFA:0001504 occipital arch cartilage ZFA:0001504 Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf). GOC:mh ORCiD:0000-0001-9114-8737 occipital arch cartilages Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate. TAO:0001505 taeniae marginales anterior zebrafish_anatomy orbital cartilage ZFA:0001505 taenia marginalis anterior ZFA:0001505 Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate. GOC:mh ORCiD:0000-0001-9114-8737 taeniae marginales anterior Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium. TAO:0001506 zebrafish_anatomy ZFA:0001506 tectum synoticum ZFA:0001506 Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium. GOC:mh ORCiD:0000-0001-9114-8737 Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra. TAO:0001507 trabeculae cranii zebrafish_anatomy ZFA:0001507 trabecula cranii ZFA:0001507 Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra. GOC:mh ORCiD:0000-0001-9114-8737 trabeculae cranii Cartilage formed via medial fusion between bilaterally paired trabecula cranii. TAO:0001508 trabecular bar zebrafish_anatomy ZFA:0001508 trabecula communis ZFA:0001508 Cartilage formed via medial fusion between bilaterally paired trabecula cranii. GOC:mh ORCiD:0000-0001-9114-8737 Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye. It lies between t lies between the sclera and the optic choroid. TAO:0001509 sclerotic cartilages zebrafish_anatomy scleral cartilage ZFA:0001509 sclerotic cartilage ZFA:0001509 Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye. It lies between t lies between the sclera and the optic choroid. ZFIN:ZDB-PUB-070629-20 sclerotic cartilages Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. It chondrifies between the anterior tips of the ceratohyal cartilages, anterior to the first copula. TAO:0001510 zebrafish_anatomy basihyal ZFA:0001510 basihyal cartilage ZFA:0001510 Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. It chondrifies between the anterior tips of the ceratohyal cartilages, anterior to the first copula. GOC:mh ORCiD:0000-0001-9114-8737 The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms. ZFA:0000218 TAO:0001511 interhyal bone stylohyal zebrafish_anatomy ZFA:0001511 interhyal cartilage ZFA:0001511 The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. ZFA:0001255 CARO:0000054 TAO:0001512 zebrafish_anatomy ZFA:0001512 anatomical group ZFA:0001512 Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. GOC:mh ORCiD:0000-0001-9114-8737 Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. TAO:0001513 dermomyotomes zebrafish_anatomy ZFA:0001513 dermomyotome ZFA:0001513 Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-060124-14 dermomyotomes Skeletal element that is composed of bone tissue. TAO:0001514 VSAO:0000057 bones zebrafish_anatomy ZFA:0001514 bone element ZFA:0001514 Skeletal element that is composed of bone tissue. VSAO:curator bones Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar. TAO:0001515 taeniae marginales posterior zebrafish_anatomy orbital cartilage ZFA:0001515 taenia marginalis posterior ZFA:0001515 Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar. GOC:mh ORCiD:0000-0001-9114-8737 taeniae marginales posterior Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches. TAO:0001516 ceratobranchial cartilages zebrafish_anatomy ZFA:0001516 ceratobranchial cartilage ZFA:0001516 Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches. GOC:mh ORCiD:0000-0001-9114-8737 ceratobranchial cartilages Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone. TAO:0001517 zebrafish_anatomy ZFA:0001517 ceratobranchial 2 cartilage ZFA:0001517 Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone. TAO:0001518 zebrafish_anatomy ZFA:0001518 ceratobranchial 3 cartilage ZFA:0001518 Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone. TAO:0001519 zebrafish_anatomy ZFA:0001519 ceratobranchial 4 cartilage ZFA:0001519 Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone. GOC:mh ORCiD:0000-0001-9114-8737 Ceratobranchial cartilage that forms between hypobranchial 1 and epibranchial 1. TAO:0001520 zebrafish_anatomy ZFA:0001520 ceratobranchial 1 cartilage ZFA:0001520 Ceratobranchial cartilage that forms between hypobranchial 1 and epibranchial 1. TAO:curator Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage. TAO:0001521 zebrafish_anatomy ZFA:0001521 ceratobranchial 5 cartilage ZFA:0001521 Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage. GOC:mh ORCiD:0000-0001-9114-8737 Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages. TAO:0001522 hypobranchial cartilages zebrafish_anatomy ZFA:0001522 hypobranchial cartilage ZFA:0001522 Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages. GOC:mh ORCiD:0000-0001-9114-8737 hypobranchial cartilages Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4. TAO:0001523 hypobranchial 4 cartilages zebrafish_anatomy ZFA:0001523 hypobranchial 4 cartilage ZFA:0001523 Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4. GOC:mh ORCiD:0000-0001-9114-8737 hypobranchial 4 cartilages Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1. TAO:0001524 hypobranchial 1 cartilages zebrafish_anatomy ZFA:0001524 hypobranchial 1 cartilage ZFA:0001524 Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1. GOC:mh ORCiD:0000-0001-9114-8737 hypobranchial 1 cartilages Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1. TAO:0001525 hypobranchial 2 cartilages zebrafish_anatomy ZFA:0001525 hypobranchial 2 cartilage ZFA:0001525 Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1. GOC:mh ORCiD:0000-0001-9114-8737 hypobranchial 2 cartilages Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1. TAO:0001526 hypobranchial 3 cartilages zebrafish_anatomy ZFA:0001526 hypobranchial 3 cartilage ZFA:0001526 Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1. GOC:mh ORCiD:0000-0001-9114-8737 hypobranchial 3 cartilages Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone. TAO:0001527 epibranchial cartilages zebrafish_anatomy ZFA:0001527 epibranchial cartilage ZFA:0001527 Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone. TAO:curator epibranchial cartilages Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and the medial end of pharyngobranchial 1. TAO:0001528 zebrafish_anatomy ZFA:0001528 epibranchial 1 cartilage ZFA:0001528 Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and the medial end of pharyngobranchial 1. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and the medial end of pharyngobranchial 3. TAO:0001529 zebrafish_anatomy ZFA:0001529 epibranchial 3 cartilage ZFA:0001529 Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and the medial end of pharyngobranchial 3. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and the medial end of pharyngobranchial 2. TAO:0001530 zebrafish_anatomy ZFA:0001530 epibranchial 2 cartilage ZFA:0001530 Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and the medial end of pharyngobranchial 2. GOC:mh ORCiD:0000-0001-9114-8737 Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and the medial end of pharyngobranchial 4. TAO:0001531 zebrafish_anatomy ZFA:0001531 epibranchial 4 cartilage ZFA:0001531 Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and the medial end of pharyngobranchial 4. GOC:mh ORCiD:0000-0001-9114-8737 ZFA:0000317 zebrafish_anatomy ZFA:0001532 axial bone true ZFA:0001532 Paired cartilages that project medially from the medial tips of epibranchials. TAO:0001533 pharyngobranchial cartilages zebrafish_anatomy ZFA:0001533 pharyngobranchial cartilage ZFA:0001533 Paired cartilages that project medially from the medial tips of epibranchials. GOC:mh ORCiD:0000-0001-9114-8737 pharyngobranchial cartilages Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3. TAO:0001534 pharyngobranchial 3 cartilages zebrafish_anatomy ZFA:0001534 pharyngobranchial 3 cartilage ZFA:0001534 Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3. GOC:mh ORCiD:0000-0001-9114-8737 pharyngobranchial 3 cartilages TAO:0001535 median fin cartilages zebrafish_anatomy ZFA:0001535 median fin cartilage ZFA:0001535 median fin cartilages Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2. TAO:0001536 pharyngobranchial 2 cartilages zebrafish_anatomy ZFA:0001536 pharyngobranchial 2 cartilage ZFA:0001536 Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2. GOC:mh ORCiD:0000-0001-9114-8737 pharyngobranchial 2 cartilages Cartilage that develops initially on the medial side of the coraco-scapular cartilage. TAO:0001537 mesocorocoid cartilages zebrafish_anatomy ZFA:0001537 mesocoracoid cartilage ZFA:0001537 Cartilage that develops initially on the medial side of the coraco-scapular cartilage. GOC:cvs ORCiD:0000-0002-2244-7917 mesocorocoid cartilages Small cartilage that forms at the posterior edge of the basipterygium. TAO:0001538 pelvic radial cartilages zebrafish_anatomy ZFA:0001538 pelvic radial cartilage ZFA:0001538 Small cartilage that forms at the posterior edge of the basipterygium. GOC:mh ORCiD:0000-0001-9114-8737 pelvic radial cartilages Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962). TAO:0001539 basipterygium cartilages zebrafish_anatomy ZFA:0001539 basipterygium cartilage ZFA:0001539 Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962). GOC:cvs ORCiD:0000-0002-2244-7917 basipterygium cartilages Small cartilage that forms at the posterior and medial edge of the basipterygium. TAO:0001540 pelvic radials 3 cartilages zebrafish_anatomy ZFA:0001540 pelvic radial 3 cartilage ZFA:0001540 Small cartilage that forms at the posterior and medial edge of the basipterygium. GOC:mh ORCiD:0000-0001-9114-8737 pelvic radials 3 cartilages Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2. TAO:0001541 pelvic radials 2 cartilages zebrafish_anatomy ZFA:0001541 pelvic radial 2 cartilage ZFA:0001541 Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2. GOC:mh ORCiD:0000-0001-9114-8737 pelvic radials 2 cartilages Small cartilage that forms at the posterior and lateral edge of the basipterygium. TAO:0001542 pelvic radials 1 cartilages zebrafish_anatomy ZFA:0001542 pelvic radial 1 cartilage ZFA:0001542 Small cartilage that forms at the posterior and lateral edge of the basipterygium. GOC:mh ORCiD:0000-0001-9114-8737 pelvic radials 1 cartilages Cartilage which is part of one of the paired fins. TAO:0001543 paired fin cartilages zebrafish_anatomy ZFA:0001543 paired fin cartilage ZFA:0001543 Cartilage which is part of one of the paired fins. GOC:mh ORCiD:0000-0001-9114-8737 paired fin cartilages ZFA:0001424 zebrafish_anatomy ZFA:0001544 chondrocranium bone true ZFA:0001544 ZFA:0000737 zebrafish_anatomy ZFA:0001545 cranial bone true ZFA:0001545 ZFA:0000095 ZFA:0001276 zebrafish_anatomy ZFA:0001546 pharyngeal arch bone true ZFA:0001546 ZFA:0000863 zebrafish_anatomy ZFA:0001547 dermatocranium bone true ZFA:0001547 ZFA:0001123 zebrafish_anatomy ZFA:0001548 axial fin bone true ZFA:0001548 ZFA:0000027 zebrafish_anatomy ZFA:0001549 Zebrafish don't have a stomach. paired fin bone true ZFA:0001549 Lepidotrichium which is part of the caudal fin. TAO:0001550 caudal fin lepidotrichia caudal fin ray zebrafish_anatomy ZFA:0001550 caudal fin lepidotrichium ZFA:0001550 Lepidotrichium which is part of the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 caudal fin lepidotrichia Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally. TAO:0001551 pectoral fin lepidotrichia pectoral fin ray zebrafish_anatomy ZFA:0001551 pectoral fin lepidotrichium ZFA:0001551 Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally. GOC:cvs ORCiD:0000-0002-2244-7917 pectoral fin lepidotrichia Lepidotrichium which is part of the pelvic fin. TAO:0001552 pelvic fin lepidotrichia pelvic fin ray zebrafish_anatomy ZFA:0001552 pelvic fin lepidotrichium ZFA:0001552 Lepidotrichium which is part of the pelvic fin. GOC:cvs ORCiD:0000-0002-2244-7917 pelvic fin lepidotrichia ZFA:0000027 ZFA:0001123 zebrafish_anatomy ZFA:0001553 fin bone true ZFA:0001553 Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. TAO:0001554 fin ray lepidotrichia zebrafish_anatomy ZFA:0001554 lepidotrichium ZFA:0001554 Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. ZFIN:ZDB-PUB-031103-13 lepidotrichia Cranial ganglion which develops from an epibranchial placode. TAO:0001555 epibranchial ganglia zebrafish_anatomy ZFA:0001555 epibranchial ganglion ZFA:0001555 Cranial ganglion which develops from an epibranchial placode. GOC:mh ORCiD:0000-0001-9114-8737 epibranchial ganglia Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord. TAO:0001556 paravertebral ganglion zebrafish_anatomy ZFA:0001556 sympathetic chain ganglion ZFA:0001556 Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord. GOC:mh ORCiD:0000-0001-9114-8737 Paired highly vascularized structures of the pronephros which are fused at the midline. Responsible for blood filtration and begins to function between 40 and 48hpf. TAO:0001557 pronephric glomera pronephric glomeruli pronephric glomus zebrafish_anatomy ZFA:0001557 pronephric glomerulus ZFA:0001557 Paired highly vascularized structures of the pronephros which are fused at the midline. Responsible for blood filtration and begins to function between 40 and 48hpf. ZFIN:ZDB-PUB-000606-4 pronephric glomeruli Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts. TAO:0001558 ciliated neck segment zebrafish_anatomy ZFA:0001558 pronephric tubule ZFA:0001558 Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts. ZFIN:ZDB-PUB-000606-4 TAO:0001559 zebrafish_anatomy ZFA:0001559 vertebral column ZFA:0001559 Ventral most hypural of the caudal fin. Supports the lower lobe of the caudal fin. TAO:0001560 zebrafish_anatomy ZFA:0001560 hypural 1 ZFA:0001560 Ventral most hypural of the caudal fin. Supports the lower lobe of the caudal fin. ZFIN:ZDB-PUB-031103-13 Hypural of the caudal fin dorsal to hypural 1. Supports the lower lobe of the caudal fin. TAO:0001561 zebrafish_anatomy ZFA:0001561 hypural 2 ZFA:0001561 Hypural of the caudal fin dorsal to hypural 1. Supports the lower lobe of the caudal fin. ZFIN:ZDB-PUB-031103-13 Hypural dorsal to hypural 2 that supports the upper lobe of the caudal fin. TAO:0001562 zebrafish_anatomy ZFA:0001562 hypural 3 ZFA:0001562 Hypural dorsal to hypural 2 that supports the upper lobe of the caudal fin. ZFIN:ZDB-PUB-031103-13 Hypural dorsal to hypural 3 that supports the upper lobe of the caudal fin. TAO:0001563 zebrafish_anatomy ZFA:0001563 hypural 4 ZFA:0001563 Hypural dorsal to hypural 3 that supports the upper lobe of the caudal fin. ZFIN:ZDB-PUB-031103-13 Dorsal-most hypural, that supports the upper lobe of the caudal fin. TAO:0001564 zebrafish_anatomy ZFA:0001564 hypural 5 ZFA:0001564 Dorsal-most hypural, that supports the upper lobe of the caudal fin. ZFIN:ZDB-PUB-031103-13 Oocyte part of stage II ovarian follicle. The stage II oocytes are characterized by the presence of cortical alveoli, a tripartite zona radiata (vitelline envelope), and a central germinal vesicle. TAO:0001565 Stage 2 oocyte cortical-alveolar oocyte oocytes stage II zebrafish_anatomy previtellogenic oocyte ZFA:0001565 In stage II (cortical alveolus stage), oocytes are distinguished by the appearance of variably sized cortical alveoli and the vitelline envelope becomes prominent, ZDB-PUB-961014-1020. oocyte stage II ZFA:0001565 Oocyte part of stage II ovarian follicle. The stage II oocytes are characterized by the presence of cortical alveoli, a tripartite zona radiata (vitelline envelope), and a central germinal vesicle. GOC:cvs GOC:mh ORCID:0000-0002-2244-7917 ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-140513-387 oocytes stage II previtellogenic oocyte ZFIN:ZDB-PUB-140513-387 Oocyte part of stage III ovarian follicle. Stage III oocytes contain internal vitellus droplets and peripheral yolk vesicles. TAO:0001566 Stage 3 oocyte oocytes stage III vitellogenic oocytes zebrafish_anatomy postvitellogenic oocyte ZFA:0001566 In stage III (vitellogenesis), yolk proteins appear in oocytes and yolk bodies with crystalline yolk accrue during this major growth stage. Oocytes develop the capacity to respond in vitro to the steroid 17, 20-dihydroxy-4-pregnen-3-one (DHP) by undergoing oocyte maturation ZDB-PUB-961014-1020. oocyte stage III ZFA:0001566 Oocyte part of stage III ovarian follicle. Stage III oocytes contain internal vitellus droplets and peripheral yolk vesicles. GOC:CVS GOC:mh ORCID:0000-0002-2244-7917 ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-140513-387 oocytes stage III postvitellogenic oocyte ZFIN:ZDB-PUB-140513-387 Oocyte part of stage I ovarian follicle. Stage I oocytes are basophilic, and have relatively large nuclei. TAO:0001567 Stage 1 oocyte oocytes stage I primary oocyte zebrafish_anatomy previtellogenic oocyte ZFA:0001567 Oocytes reside in nests with other oocytes (Stage IA) and then within a definitive follicle (Stage IB), where they greatly increase in size ZDB-PUB-961014-1020. oocyte stage I ZFA:0001567 Oocyte part of stage I ovarian follicle. Stage I oocytes are basophilic, and have relatively large nuclei. GOC:cvs GOC:mh ORCID:0000-0002-2244-7917 ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-140513-387 oocytes stage I previtellogenic oocyte ZFIN:ZDB-PUB-140513-387 Oocyte part of stage IV ovarian follicle. Stage IV oocytes are large and filled with noncrystalline yolky bodies. TAO:0001568 Stage 4 oocyte mature oocytes oocytes stage IV zebrafish_anatomy postvitellogenic oocyte ZFA:0001568 In stage IV (oocyte maturation), oocytes increase slightly in size, become translucent, and their yolk becomes non-crystalline as they undergo final meiotic maturation in vivo (and in response to DHP in vitro). ZDB-PUB-961014-1020. oocyte stage IV ZFA:0001568 Oocyte part of stage IV ovarian follicle. Stage IV oocytes are large and filled with noncrystalline yolky bodies. GOC:CVS GOC:mh ORCID:0000-0002-2244-7917 ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-140513-387 oocytes stage IV postvitellogenic oocyte ZFIN:ZDB-PUB-140513-387 Oocyte part of stage V ovarian follicle. TAO:0001569 mature egg unactivated egg zebrafish_anatomy ZFA:0001569 In stage V (mature egg), eggs (approx. 0.75 mm) are ovulated into the ovarian lumen and are capable of fertilization ZDB-PUB-961014-1020. oocyte stage V ZFA:0001569 Oocyte part of stage V ovarian follicle. GOC:mh ORCiD:0000-0001-9114-8737 A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization. In zebrafish specified to be outside the body. CL:0000025 TAO:0001570 activated oocyte egg zebrafish_anatomy ZFA:0001570 Outside the body. unfertilized egg ZFA:0001570 A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization. In zebrafish specified to be outside the body. ISBN:0721662544 A follicle that has undergone ovulation and no longer contains an oocyte. TAO:0001571 postovulatory follicles zebrafish_anatomy ZFA:0001571 postovulatory follicle ZFA:0001571 A follicle that has undergone ovulation and no longer contains an oocyte. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 postovulatory follicles Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain. TAO:0001572 superior sympathetic cervical ganglion zebrafish_anatomy SCG ZFA:0001572 superior cervical ganglion ZFA:0001572 Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain. GOC:mh ORCiD:0000-0001-9114-8737 Ganglion which is located in the trunk. TAO:0001573 trunk ganglia zebrafish_anatomy ZFA:0001573 trunk ganglion ZFA:0001573 Ganglion which is located in the trunk. GOC:mh ORCiD:0000-0001-9114-8737 trunk ganglia Nervous system that innervates smooth muscle, cardiac muscle and glands. Regulates involuntary process such as blood circulation and digestion. Has subdivisions sympathetic nervous system and parasympathetic nervous system. TAO:0001574 ANS zebrafish_anatomy ZFA:0001574 autonomic nervous system ZFA:0001574 Nervous system that innervates smooth muscle, cardiac muscle and glands. Regulates involuntary process such as blood circulation and digestion. Has subdivisions sympathetic nervous system and parasympathetic nervous system. GOC:cvs GOC:ymb ISBN:0314472304 ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Autonomic nervous system where the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic. TAO:0001575 zebrafish_anatomy ZFA:0001575 parasympathetic nervous system ZFA:0001575 Autonomic nervous system where the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic. GOC:GOC GOC:ymb ISBN:0080923437 ORCiD:0000-0002-9900-7880 Autonomic nervous system that originates beginning at the thoracic and lumbar areas of the spinal cord. Sympathetic neurons are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides. TAO:0001576 zebrafish_anatomy ZFA:0001576 sympathetic nervous system ZFA:0001576 Autonomic nervous system that originates beginning at the thoracic and lumbar areas of the spinal cord. Sympathetic neurons are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides. GOC:cvs GOC:ymb ISBN:0080923437 ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Process of the premaxilla that extends posteriorly and overlays the mesethmoid. TAO:0001577 premaxilla ascending processes zebrafish_anatomy ZFA:0001577 premaxilla ascending process ZFA:0001577 Process of the premaxilla that extends posteriorly and overlays the mesethmoid. GOC:ymb ORCiD:0000-0002-9900-7880 premaxilla ascending processes In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts. TAO:0001578 anterior dorsomedial process of autopalatines zebrafish_anatomy ZFA:0001578 anterior dorsomedial process of autopalatine ZFA:0001578 In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 anterior dorsomedial process of autopalatines Ural vertebra that is the second vertebra posterior to preural centrum 1. TAO:0001579 zebrafish_anatomy ZFA:0001579 ural vertebra 2 ZFA:0001579 Ural vertebra that is the second vertebra posterior to preural centrum 1. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical cluster that is the regional skeletal system surrounding the brain. TAO:0001580 braincase zebrafish_anatomy palatal skeleton ZFA:0001580 neurocranium ZFA:0001580 Anatomical cluster that is the regional skeletal system surrounding the brain. GOC:mh ORCiD:0000-0001-9114-8737 palatal skeleton ZFIN:ZDB-PUB-201027-4 A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone. TAO:0001581 zebrafish_anatomy ZFA:0001581 ural centrum 2 ZFA:0001581 A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone. TAO:curator Precaudal vertebra that is not a Weberian vertebra. Vertebra 5 through 14. TAO:0001582 non-Weberian precaudal vertebrae zebrafish_anatomy ZFA:0001582 non-Weberian precaudal vertebra ZFA:0001582 Precaudal vertebra that is not a Weberian vertebra. Vertebra 5 through 14. GOC:mh ORCiD:0000-0001-9114-8737 non-Weberian precaudal vertebrae Vertebra which is the fused centra of preural 1 and ural 1. These elements do not develop independently in zebrafish. TAO:0001583 zebrafish_anatomy urostyle ZFA:0001583 preural centrum 1+ ural centrum 1 ZFA:0001583 Vertebra which is the fused centra of preural 1 and ural 1. These elements do not develop independently in zebrafish. ZFIN:ZDB-PUB-031103-13 Caudal fin lepidotrichium that is located anterior to the principal caudal fin rays. Caudal procurrent rays are unbranched. TAO:0001584 caudal procurrent lepidotrichium zebrafish_anatomy caudal procurrent ray ZFA:0001584 caudal fin procurrent ray ZFA:0001584 Caudal fin lepidotrichium that is located anterior to the principal caudal fin rays. Caudal procurrent rays are unbranched. GOC:cvs ORCiD:0000-0002-2244-7917 Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented and branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone. There are 19 principal caudal rays, with 10 in the dorsal lobe and nine in the ventral lobe. The dorsal lobe rays articulate with hypurals 3-5. TAO:0001585 caudal principal lepidotrichium caudal principal ray zebrafish_anatomy ZFA:0001585 caudal fin principal ray ZFA:0001585 Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented and branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone. There are 19 principal caudal rays, with 10 in the dorsal lobe and nine in the ventral lobe. The dorsal lobe rays articulate with hypurals 3-5. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle. TAO:0001586 pectoral fin radials zebrafish_anatomy ZFA:0001586 pectoral fin radial ZFA:0001586 Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle. TAO:curator pectoral fin radials Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid). TAO:0001587 zebrafish_anatomy ZFA:0001587 pectoral fin proximal radial ZFA:0001587 Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid). TAO:curator Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired. TAO:0001588 pectoral fin distal radials zebrafish_anatomy ZFA:0001588 pectoral fin distal radial ZFA:0001588 Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired. TAO:curator pectoral fin distal radials The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula. TAO:0001589 propterygia zebrafish_anatomy ZFA:0001589 propterygium ZFA:0001589 The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula. TAO:Curator propterygia Intramembranous bone that forms superficially in the organism. Dermal bones develop from the direct differentiation of mesenchymal cells into osteoblasts. TAO:0001590 dermal bones zebrafish_anatomy ZFA:0001590 dermal bone ZFA:0001590 Intramembranous bone that forms superficially in the organism. Dermal bones develop from the direct differentiation of mesenchymal cells into osteoblasts. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-120529-44 dermal bones Replacement bone that forms within cartilage. TAO:0001591 endochondral bones zebrafish_anatomy ZFA:0001591 endochondral bone ZFA:0001591 Replacement bone that forms within cartilage. GOC:mh ORCiD:0000-0001-9114-8737 endochondral bones Bone that is bilaterally paired endochondral bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts. TAO:0001592 zebrafish_anatomy ZFA:0001592 claustrum bone ZFA:0001592 Bone that is bilaterally paired endochondral bone with extensions of membrane bone forming part of a dorsolateral protective wall around the neural canal between the back of the skull and the beginning of the neural arch series. The first Weberian ossicle. Most recently, de Pinna and Grande (2003) have proposed the claustrum is homologous to the accessory neural arch of lower teleosts. GOC:mh ORCiD:0000-0001-9114-8737 An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate. TAO:0000224 quadrate ventral processes zebrafish_anatomy ZFA:0001593 quadrate ventral process ZFA:0001593 An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate. GOC:ymb ORCiD:0000-0002-9900-7880 quadrate ventral processes A dermal bone that is the lower, horizontal portion of the preopercle bone. TAO:0000289 preopercle anterior arm preopercle horizontal arm preopercle lower limb preopercle ventral arm zebrafish_anatomy ZFA:0001594 preopercle horizontal limb ZFA:0001594 A dermal bone that is the lower, horizontal portion of the preopercle bone. GOC:mh ORCiD:0000-0001-9114-8737 preopercle anterior arm ZFIN:ZDB-PUB-961014-192 preopercle ventral arm ZFIN:ZDB-PUB-961014-192 A dermal bone that is the upper, vertical portion of the preopercle bone. TAO:0000336 preopercle dorsal arm preopercle posterior arm preopercle upper limb preopercle vertical arm zebrafish_anatomy ZFA:0001595 preopercle vertical limb ZFA:0001595 A dermal bone that is the upper, vertical portion of the preopercle bone. GOC:mh ORCiD:0000-0001-9114-8737 preopercle dorsal arm ZFIN:ZDB-PUB-961014-192. preopercle posterior arm ZFIN:ZDB-PUB-961014-192. Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue. TAO:0000367 joints zebrafish_anatomy ZFA:0001596 joint ZFA:0001596 Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue. GOC:cvs ORCiD:0000-0002-2244-7917 joints Endochondral bone which is the posteroventral region of the exoccipital bone. TAO:0000348 exoccipitals posteroventral regions zebrafish_anatomy ZFA:0001597 exoccipital posteroventral region ZFA:0001597 Endochondral bone which is the posteroventral region of the exoccipital bone. GOC:mh ORCiD:0000-0001-9114-8737 exoccipitals posteroventral regions Endochondral bone which is the posterodorsal region of the basioccipital bone. TAO:0000337 zebrafish_anatomy ZFA:0001598 basioccipital posterodorsal region ZFA:0001598 Endochondral bone which is the posterodorsal region of the basioccipital bone. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0002214 zebrafish_anatomy ZFA:0001599 os suspensorium medial flange ZFA:0001599 Neural spine that is located on the fourth vertebra. TAO:0001546 zebrafish_anatomy ZFA:0001600 neural spine 4 ZFA:0001600 Neural spine that is located on the fourth vertebra. GOC:mh ORCiD:0000-0001-9114-8737 Anterior branch of the intercalarium. The manubrium develops as a simple antero-lateral membrane bone extension from basidorsal 2. TAO:0001553 anterior process of the intercalarium horizontal process manubrium incudus zebrafish_anatomy anterior branch of the intercalarium ZFA:0001601 manubrium ZFA:0001601 Anterior branch of the intercalarium. The manubrium develops as a simple antero-lateral membrane bone extension from basidorsal 2. ZFIN:ZDB-PUB-031103-13 Bony process that develops as a dorsally projecting cartilaginous extension from the basidorsal. The ascending process is longer relative to the manubrium in larvae (5.1-11.0 mm). By 13.0 mm, the ascending process appears highly reduced in size. TAO:0001548 zebrafish_anatomy ZFA:0001602 intercalarium ascending process ZFA:0001602 Bony process that develops as a dorsally projecting cartilaginous extension from the basidorsal. The ascending process is longer relative to the manubrium in larvae (5.1-11.0 mm). By 13.0 mm, the ascending process appears highly reduced in size. ZFIN:ZDB-PUB-031103-13 Portion of the intercalarium that ossifies from the cartilage condensation and articulates with a groove in centrum 2. TAO:0001549 zebrafish_anatomy articular process ZFA:0001603 intercalarium articulating process ZFA:0001603 Portion of the intercalarium that ossifies from the cartilage condensation and articulates with a groove in centrum 2. ZFIN:ZDB-PUB-031103-13 Surface structure that is the dorsal portion of the caudal fin. TAO:0001593 caudal fin dorsal lobe zebrafish_anatomy ZFA:0001604 caudal fin upper lobe ZFA:0001604 Surface structure that is the dorsal portion of the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Surface structure that is the ventral portion of the caudal fin. TAO:0001594 caudal fin ventral lobe zebrafish_anatomy ZFA:0001605 caudal fin lower lobe ZFA:0001605 Surface structure that is the ventral portion of the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0001598 branchial arch 1 gill arch 1 visceral arch 3 zebrafish_anatomy ZFA:0001606 pharyngeal arch 3 ZFA:0001606 TAO:0001599 branchial arch 2 gill arch 2 visceral arch 4 zebrafish_anatomy ZFA:0001607 pharyngeal arch 4 ZFA:0001607 TAO:0001600 branchial arch 3 gill arch 3 visceral arch 5 zebrafish_anatomy ZFA:0001608 pharyngeal arch 5 ZFA:0001608 TAO:0001601 branchial arch 4 gill arch 4 visceral arch 6 zebrafish_anatomy ZFA:0001609 pharyngeal arch 6 ZFA:0001609 TAO:0001602 branchial arch 5 gill arch 5 visceral arch 7 zebrafish_anatomy ZFA:0001610 pharyngeal arch 7 ZFA:0001610 The second pharyngeal arch, also known as the hyoid arch, forms jaw support structures. Anteriorly positioned cranial neural crest cells, which align with rhombomeres 4/5, contribute to the hyoid arch structures including the ceratohyal and hyosymplectic cartilages. TAO:0001596 hyoid arch visceral arch 2 zebrafish_anatomy ZFA:0001611 pharyngeal arch 2 ZFA:0001611 The second pharyngeal arch, also known as the hyoid arch, forms jaw support structures. Anteriorly positioned cranial neural crest cells, which align with rhombomeres 4/5, contribute to the hyoid arch structures including the ceratohyal and hyosymplectic cartilages. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020904-6 ZFIN:ZDB-PUB-040726-7 ZFIN:ZDB-PUB-961014-985 The first pharyngeal arch, also known as the mandibular arch, forms the jaw. The first pharyngeal arch gives rise to elements of the jaw, with the most anteriorly positioned cranial neural crest cells contributing to mandibular arch structures, including Meckel's and palatoquadrate cartilages that constitute the lower and upper jaw respectively. TAO:0001595 mandibular arch visceral arch 1 zebrafish_anatomy ZFA:0001612 pharyngeal arch 1 ZFA:0001612 The first pharyngeal arch, also known as the mandibular arch, forms the jaw. The first pharyngeal arch gives rise to elements of the jaw, with the most anteriorly positioned cranial neural crest cells contributing to mandibular arch structures, including Meckel's and palatoquadrate cartilages that constitute the lower and upper jaw respectively. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020904-6 ZFIN:ZDB-PUB-121120-12 ZFIN:ZDB-PUB-961014-985 ZFA:0000515 ZFA:0000625 TAO:0000625 TAO:0001597 branchial arch branchial arches branchial bar branchial bars gill arch gill arches 1-5 visceral arches 3-7 zebrafish_anatomy ZFA:0001613 pharyngeal arch 3-7 ZFA:0001613 branchial arches branchial bars Endocardium that is part of the atrium. TAO:0002169 zebrafish_anatomy ZFA:0001614 atrial endocardium ZFA:0001614 Endocardium that is part of the atrium. GOC:cvs ORCiD:0000-0002-2244-7917 Endocardium that is part of the cardiac ventricle. TAO:0002247 zebrafish_anatomy ZFA:0001615 ventricular endocardium ZFA:0001615 Endocardium that is part of the cardiac ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Endocardium that is part of the atrioventricular canal. TAO:0002170 zebrafish_anatomy ZFA:0001616 atrioventricular canal endocardium ZFA:0001616 Endocardium that is part of the atrioventricular canal. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of organism substance composed of calcium carbonate located in the otolith organ and positioned over a sensory macula; two form in each vesicle during the late segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/oto/otolith.html'>otolith</a> by T. Whitfield.) ZFA:0000139 TAO:0001621 statolith zebrafish_anatomy immature otolith immature otoliths ZFA:0001617 otolith ZFA:0001617 Portion of organism substance composed of calcium carbonate located in the otolith organ and positioned over a sensory macula; two form in each vesicle during the late segmentation period. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/oto/otolith.html'>otolith</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 immature otoliths zebrafish_anatomy ZFA:0001618 pons true ZFA:0001618 Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve. TAO:0002212 nerve fiber layer optic fiber layers zebrafish_anatomy ZFA:0001619 optic fiber layer ZFA:0001619 Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-000126-5 optic fiber layers Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007). TAO:0002238 PCT zebrafish_anatomy ZFA:0001620 pronephric proximal convoluted tubule ZFA:0001620 Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007). ZFIN:ZDB-PUB-071029-9 Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule. TAO:0002239 proximal straight tubules zebrafish_anatomy ZFA:0001621 pronephric proximal straight tubule ZFA:0001621 Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule. ZFIN:ZDB-PUB-071029-9 proximal straight tubules Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal straight tubule. TAO:0002236 pronephric distal early tubules zebrafish_anatomy ZFA:0001622 pronephric distal early tubule ZFA:0001622 Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal straight tubule. ZFIN:ZDB-PUB-071029-9 pronephric distal early tubules Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening. TAO:0002225 posterior pronephric ducts zebrafish_anatomy ZFA:0001623 posterior pronephric duct ZFA:0001623 Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening. ZFIN:ZDB-PUB-071029-9 posterior pronephric ducts Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule. distal late tubules zebrafish_anatomy ZFA:0001624 pronephric distal late tubule ZFA:0001624 Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule. ZFIN:ZDB-PUB-071029-9 distal late tubules Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye. TAO:0002213 optic nerve heads zebrafish_anatomy ZFA:0001625 optic nerve head ZFA:0001625 Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye. GOC:mh ORCiD:0000-0001-9114-8737 optic nerve heads Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain. TAO:0002184 CSF zebrafish_anatomy ZFA:0001626 cerebral spinal fluid ZFA:0001626 Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain. GOC:cvs ORCiD:0000-0002-2244-7917 Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena. TAO:0001620 lagenar capsules zebrafish_anatomy ZFA:0001627 lagenar capsule ZFA:0001627 Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena. GOC:ymb ORCiD:0000-0002-9900-7880 lagenar capsules Bone that forms as a replacement of another structural tissue. TAO:0001637 replacement bones zebrafish_anatomy ZFA:0001628 replacement bone ZFA:0001628 Bone that forms as a replacement of another structural tissue. GOC:mh ORCiD:0000-0001-9114-8737 replacement bones Replacement bone that forms within the connective tissue surrounding the notochord. TAO:0001639 perichordal bones zebrafish_anatomy ZFA:0001629 perichordal bone ZFA:0001629 Replacement bone that forms within the connective tissue surrounding the notochord. GOC:mh ORCiD:0000-0001-9114-8737 perichordal bones Replacement bone that forms within the connective tissue surrounding cartilage. TAO:0001638 perichondral bones zebrafish_anatomy ZFA:0001630 perichondral bone ZFA:0001630 Replacement bone that forms within the connective tissue surrounding cartilage. GOC:mh ORCiD:0000-0001-9114-8737 perichondral bones Perichordal bone that surrounds the anterior tip of the notochord. TAO:0001640 zebrafish_anatomy ZFA:0001631 notochordal ossification ZFA:0001631 Perichordal bone that surrounds the anterior tip of the notochord. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues. TAO:0001641 VSAO:0000017 zebrafish_anatomy ZFA:0001632 portion of connective tissue ZFA:0001632 Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues. GOC:mh ORCiD:0000-0001-9114-8737 Portion of connective tissue which surrounds the notochord. TAO:0001642 zebrafish_anatomy ZFA:0001633 perichordal connective tissue ZFA:0001633 Portion of connective tissue which surrounds the notochord. GOC:mh ORCiD:0000-0001-9114-8737 Portion of connective tissue which surrounds cartilage. TAO:0001643 cartilage connective tissue zebrafish_anatomy ZFA:0001634 perichondrium ZFA:0001634 Portion of connective tissue which surrounds cartilage. GOC:mh ORCiD:0000-0001-9114-8737 Bone that forms directly within mesenchyme, and does not replace other tissues. TAO:0001644 intramembranous bones zebrafish_anatomy ZFA:0001635 intramembranous bone ZFA:0001635 Bone that forms directly within mesenchyme, and does not replace other tissues. GOC:mh ORCiD:0000-0001-9114-8737 intramembranous bones Intramembranous bone that forms deep in the organism. TAO:0001645 membrane bones zebrafish_anatomy ZFA:0001636 membrane bone ZFA:0001636 Intramembranous bone that forms deep in the organism. GOC:mh ORCiD:0000-0001-9114-8737 membrane bones Portion of connective tissue that is an extension of a bone. TAO:0001646 TAO:0001834 bony projections process zebrafish_anatomy ZFA:0001637 bony projection ZFA:0001637 Portion of connective tissue that is an extension of a bone. GOC:cvs ORCiD:0000-0002-2244-7917 bony projections process TAO:0001834 TAO:0002243 cochlear nucleus octaval nucleus vestibulocochlear nucleus zebrafish_anatomy ZFA:0001638 statoacoustic (VIII) nucleus ZFA:0001638 Simple squamous epithelium which lines blood and lymphatic vessels and the heart. TAO:0002171 endothelia zebrafish_anatomy ZFA:0001639 vascular endothelium ZFA:0001639 Simple squamous epithelium which lines blood and lymphatic vessels and the heart. GOC:cvs ORCiD:0000-0002-2244-7917 endothelia Ventral bend in the brain occurring caudal to the adenohypophyseal placode. TAO:0002181 ventral flexure zebrafish_anatomy ZFA:0001640 cephalic flexure ZFA:0001640 Ventral bend in the brain occurring caudal to the adenohypophyseal placode. GOC:cvs ORCiD:0000-0002-2244-7917 Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002. TAO:0001666 zebrafish_anatomy ZFA:0001641 rudimentary neural arch ZFA:0001641 Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical cluster consisting of adjacent teeth constituting a row. TAO:0001667 tooth rows zebrafish_anatomy ZFA:0001642 tooth row ZFA:0001642 Anatomical cluster consisting of adjacent teeth constituting a row. GOC:mh ORCiD:0000-0001-9114-8737 tooth rows Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. CARO:0000005 TAO:0001668 anatomical spaces zebrafish_anatomy ZFA:0001643 Part_of parents of these terms should be changed to be located_in rather then part_of when we get the appropriate relation. anatomical space ZFA:0001643 Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. GOC:mh ORCiD:0000-0001-9114-8737 anatomical spaces Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone. TAO:0001670 articular cartilages zebrafish_anatomy ZFA:0001644 articular cartilage ZFA:0001644 Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 articular cartilages Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone. TAO:0001669 angular bones zebrafish_anatomy ZFA:0001645 angular bone ZFA:0001645 Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone. TAO:curator angular bones Internal skeletal supports of the anal fin. TAO:0001671 anal fin radials zebrafish_anatomy anal fin pterygiophores ZFA:0001646 anal fin radial ZFA:0001646 Internal skeletal supports of the anal fin. TAO:curator anal fin radials Internal skeletal supports of the dorsal fin. TAO:0001672 dorsal fin radials zebrafish_anatomy dorsal fin pterygiophore ZFA:0001647 dorsal fin radial ZFA:0001647 Internal skeletal supports of the dorsal fin. TAO:curator dorsal fin radials Neural crest that migrates into the pharyngeal arches and heart, forming connective tissue that separates the vessels of the heart. TAO:0002173 zebrafish_anatomy ZFA:0001648 cardiac neural crest ZFA:0001648 Neural crest that migrates into the pharyngeal arches and heart, forming connective tissue that separates the vessels of the heart. GOC:ymb ORCiD:0000-0002-9900-7880 Anatomical cluster that is the series of dermal bones associated with the infraorbital sensory canal located under and posterior to the eye. TAO:0001709 circumorbital series zebrafish_anatomy ZFA:0001649 infraorbital series ZFA:0001649 Anatomical cluster that is the series of dermal bones associated with the infraorbital sensory canal located under and posterior to the eye. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0002172 gill mesenchyme zebrafish_anatomy ZFA:0001650 branchial mesenchyme ZFA:0001650 Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape. The muscle is innervated by the occipitospinals and mainly composed of fast twitch muscle fibers. ZFA:0000283 TAO:0000283 TAO:0002200 hypobranchial muscle sternohyoideus sternohyoids zebrafish_anatomy ZFA:0001651 sternohyoid ZFA:0001651 Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape. The muscle is innervated by the occipitospinals and mainly composed of fast twitch muscle fibers. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-080306-33 ZFIN:ZDB-PUB-190427-4 ZFIN:ZDB-PUB-970819-13 Muscle which is part of the head. TAO:0002198 cephalic muscle zebrafish_anatomy cranial muscle ZFA:0001652 head muscle ZFA:0001652 Muscle which is part of the head. GOC:mh ORCiD:0000-0001-9114-8737 Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium. TAO:0002221 zebrafish_anatomy ZFA:0001653 pericardial muscle ZFA:0001653 Muscle which is paired and runs anterio-posteriorly along the heart and is covered with epicardium. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-001026-2 Anatomical space which is located beneath the operculum and external to the gills. TAO:0002154 zebrafish_anatomy ZFA:0001654 opercular cavity ZFA:0001654 Anatomical space which is located beneath the operculum and external to the gills. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical space in which the heart is located and is surrounded by the pericardium. TAO:0002220 thoracic cavity zebrafish_anatomy ZFA:0001655 pericardial cavity ZFA:0001655 Anatomical space in which the heart is located and is surrounded by the pericardium. GOC:mh ORCiD:0000-0001-9114-8737 Anatomical space which contains the abdominal viscera and swim bladder. Located posterior to the pericardial cavity, separated by the transverse septum. From Functional Anatomy of the Vertebrates, third edition. TAO:0002224 visceral cavity zebrafish_anatomy coelom coelomic cavity ZFA:0001656 pleuroperitoneal cavity ZFA:0001656 Anatomical space which contains the abdominal viscera and swim bladder. Located posterior to the pericardial cavity, separated by the transverse septum. From Functional Anatomy of the Vertebrates, third edition. GOC:cvs ISBN:0030223695 ORCiD:0000-0002-2244-7917 CNS tract/commissure which extends between the telencephalon and diencephalon and lies along the dorsal edge of the optic stalk. TAO:0002244 SOT zebrafish_anatomy ZFA:0001657 supraoptic tract ZFA:0001657 CNS tract/commissure which extends between the telencephalon and diencephalon and lies along the dorsal edge of the optic stalk. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-961014-719 ZFIN:ZDB-PUB-961014-955 Nucleus located within the hindbrain. TAO:0002177 zebrafish_anatomy ZFA:0001658 hindbrain nucleus ZFA:0001658 Nucleus located within the hindbrain. GOC:mh ORCiD:0000-0001-9114-8737 Brain nucleus part of the diencephalon. TAO:0002191 zebrafish_anatomy ZFA:0001659 diencephalic nucleus ZFA:0001659 Brain nucleus part of the diencephalon. GOC:mh ORCiD:0000-0001-9114-8737 TAO:0002178 zebrafish_anatomy ZFA:0001660 telencephalic nucleus ZFA:0001660 true ZFA:0001661 Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. TAO:0002226 zebrafish_anatomy ZFA:0001662 preglomerular nucleus ZFA:0001662 Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 The portion of tissue that is the initial segment of one of the cranial nerves leaving the central nervous system. TAO:0002190 zebrafish_anatomy ZFA:0001663 cranial nerve root ZFA:0001663 The portion of tissue that is the initial segment of one of the cranial nerves leaving the central nervous system. http://en.wikipedia.org/wiki/Nerve_root true ZFA:0001664 Nucleus located in the midbrain. TAO:0002209 zebrafish_anatomy ZFA:0001665 midbrain nucleus ZFA:0001665 Nucleus located in the midbrain. GOC:mh ORCiD:0000-0001-9114-8737 Telencephalic nucleus which is in contact with the median ependymal lining of the ventricle and consists of the dorsal, ventral, supracommissural and postcommissural nuclei of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0002222 zebrafish_anatomy ZFA:0001666 periventricular nucleus of ventral telencephalon ZFA:0001666 Telencephalic nucleus which is in contact with the median ependymal lining of the ventricle and consists of the dorsal, ventral, supracommissural and postcommissural nuclei of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain. TAO:0002179 zebrafish_anatomy ZFA:0001667 peripheral nucleus of ventral telencephalon ZFA:0001667 Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. TAO:0002180 area ventralis telencephali, nucleus centralis zebrafish_anatomy ZFA:0001668 central nucleus of ventral telencephalon ZFA:0001668 Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. GOC:mh ISBN:3764351209 ORCiD:0000-0001-9114-8737 Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells. TAO:0002202 zebrafish_anatomy ZFA:0001669 intermediate nucleus ZFA:0001669 Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells. ZFIN:ZDB-PUB-001220-2 Portion of tissue that is the part of the notochord located in the caudal fin. TAO:0001821 zebrafish_anatomy ZFA:0001670 notochord posterior region ZFA:0001670 Portion of tissue that is the part of the notochord located in the caudal fin. GOC:mh ORCiD:0000-0001-9114-8737 Epithelium that is the primary epithelium of the developing inner ear and has anterior and posterior maculae as its parts. These maculae later move apart into distinct regions of epithelium. TAO:0002206 zebrafish_anatomy ZFA:0001671 macula communis ZFA:0001671 Epithelium that is the primary epithelium of the developing inner ear and has anterior and posterior maculae as its parts. These maculae later move apart into distinct regions of epithelium. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-383 Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals. TAO:0002193 zebrafish_anatomy dorsal bar ZFA:0001672 dorsolateral septum ZFA:0001672 Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-383 Podocyte that is part of the pronephros. TAO:0002237 zebrafish_anatomy ZFA:0001673 pronephric podocyte ZFA:0001673 Podocyte that is part of the pronephros. GOC:cvs ORCiD:0000-0002-2244-7917 Podocyte that is part of the kidney (mesonephros). TAO:0002208 zebrafish_anatomy ZFA:0001674 mesonephric podocyte ZFA:0001674 Podocyte that is part of the kidney (mesonephros). GOC:cvs ORCiD:0000-0002-2244-7917 Portion of connective tissue that is a fibrous band connecting bones or cartilages or supporting an organ. TAO:0001682 zebrafish_anatomy ZFA:0001675 ligament ZFA:0001675 Portion of connective tissue that is a fibrous band connecting bones or cartilages or supporting an organ. GOC:cvs ORCiD:0000-0002-2244-7917 Ligament that is in the eye and is located at the angle between the cornea and the iris. TAO:0002141 zebrafish_anatomy ZFA:0001676 annular ligament ZFA:0001676 Ligament that is in the eye and is located at the angle between the cornea and the iris. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070629-16 Floor plate that is part of the midbrain. TAO:0002196 zebrafish_anatomy ZFA:0001677 floor plate midbrain region ZFA:0001677 Floor plate that is part of the midbrain. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure that consists of the structures that develop into the retina and lens. TAO:0002201 zebrafish_anatomy ZFA:0001678 Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-090226-1 correct Dbxref ZDB-ANAT-090227-5. immature eye ZFA:0001678 Multi-tissue structure that consists of the structures that develop into the retina and lens. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue that gives rise to the lens. The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24-26 hpf is accomplished in part by apoptosis, similar to mammals. TAO:0002205 immature lens lens mass lens vesicle zebrafish_anatomy presumptive lens ZFA:0001679 Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-090226-2 correct Dbxref ZDB-ANAT-090227-6. solid lens vesicle ZFA:0001679 Portion of tissue that gives rise to the lens. The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24-26 hpf is accomplished in part by apoptosis, similar to mammals. GOC:cvs ORCiD:CVS ZFIN:ZDB-PUB-050701-15 lens mass ZFIN:ZDB-PUB-091023-49 lens vesicle ZFIN:ZDB-PUB-050701-15 Diencephalic nucleus that is part of the preoptic area. From Neuroanatomy of the Zebrafish Brain. Melissa Haendel 2009-03-23T01:16:53Z TAO:0002219 zebrafish_anatomy ZFA:0001680 parvocellular preoptic nucleus ZFA:0001680 Diencephalic nucleus that is part of the preoptic area. From Neuroanatomy of the Zebrafish Brain. ISBN:3764351209 Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries. Melissa Haendel 2009-03-23T01:47:27Z TAO:0002197 gray matter zebrafish_anatomy gray mater ZFA:0001681 grey matter ZFA:0001681 Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries. GOC:mh ORCiD:0000-0001-9114-8737 Multi-tissue structure comprised largely of myelinated axons. Melissa Haendel 2009-03-23T01:50:38Z ZFA:0000145 TAO:0000145 TAO:0002142 TAO:0002143 CNS tract/commissure CNS white matter zebrafish_anatomy white mater ZFA:0001682 white matter ZFA:0001682 Multi-tissue structure comprised largely of myelinated axons. GOC:mh ORCiD:0000-0001-9114-8737 Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea. Melissa Haendel 2009-03-23T02:11:11Z TAO:0002187 zebrafish_anatomy ZFA:0001683 corneal epithelium ZFA:0001683 Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-061010-3 Acellular anatomical structure that is the zone of condensed collagen fibers underneath the basement membrane of the corneal epithelium that overlays the corneal stroma layer. Melissa Haendel 2009-03-23T02:11:47Z TAO:0002155 anterior elastic lamina zebrafish_anatomy anterior limiting membrane ZFA:0001684 Bowman's layer ZFA:0001684 Acellular anatomical structure that is the zone of condensed collagen fibers underneath the basement membrane of the corneal epithelium that overlays the corneal stroma layer. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-050701-15 ZFIN:ZDB-PUB-061010-3 Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue. Melissa Haendel 2009-03-23T02:12:16Z TAO:0002189 zebrafish_anatomy ZFA:0001685 corneal stroma ZFA:0001685 Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-061010-3 Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization. Melissa Haendel 2009-03-23T02:12:32Z TAO:0002157 posterior limiting membrane zebrafish_anatomy ZFA:0001686 Descemet's membrane ZFA:0001686 Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-050701-15 ZFIN:ZDB-PUB-061010-3 Epithelium that is the innermost layer of the cornea and is comprised of a monolayer of polygonal cells. Melissa Haendel 2009-03-23T02:13:25Z TAO:0002186 zebrafish_anatomy ZFA:0001687 corneal endothelium ZFA:0001687 Epithelium that is the innermost layer of the cornea and is comprised of a monolayer of polygonal cells. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-061010-3 Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea. Melissa Haendel 2009-03-23T04:36:20Z TAO:0002188 zebrafish_anatomy ZFA:0001688 corneal primordium ZFA:0001688 Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-061010-3 Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. Melissa Haendel 2009-04-30T02:46:34Z CARO:0000008 TAO:0001837 zebrafish_anatomy ZFA:0001689 anatomical line ZFA:0001689 Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. CARO:MAH ORCiD:0000-0001-9114-8737 Anatomical structure that delineates a furrow or depression in an organ or tissue. Melissa Haendel 2009-04-30T02:48:53Z TAO:0001838 zebrafish_anatomy ZFA:0001690 groove ZFA:0001690 Anatomical structure that delineates a furrow or depression in an organ or tissue. GOC:mh ORCiD:0000-0001-9114-8737 Granule cell that is part of the cerebellum. Melissa Haendel 2009-04-30T03:18:48Z CL:0001031 TAO:0002182 zebrafish_anatomy ZFA:0001691 cerebellar granule cell ZFA:0001691 Granule cell that is part of the cerebellum. CL:curator CNS white matter that crosses the midline within the hindbrain. Melissa Haendel 2009-06-18T12:33:21Z TAO:0002199 zebrafish_anatomy ZFA:0001692 hindbrain commissure ZFA:0001692 CNS white matter that crosses the midline within the hindbrain. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-090417-11 Replacement bone that forms within or surrounding a cartilaginous skeletal element. Melissa Haendel 2009-07-29T11:34:33Z zebrafish_anatomy ZFA:0001693 chondral bone ZFA:0001693 Replacement bone that forms within or surrounding a cartilaginous skeletal element. GOC:mh ORCiD:0000-0001-9114-8737 Granule cell that is part of the olfactory bulb. Melissa Haendel 2009-04-30T03:21:40Z CL:0000626 TAO:0002211 zebrafish_anatomy ZFA:0001694 olfactory granule cell ZFA:0001694 Granule cell that is part of the olfactory bulb. CL:curator Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhombomere 8. Melissa Haendel 2009-08-04T10:42:49Z TAO:0002192 dlX zebrafish_anatomy ZFA:0001695 dorsolateral motor nucleus of vagal nerve ZFA:0001695 Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhombomere 8. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090417-11 Motor nucleus of vagal nerve that is located within the medial portion of rhombomere 8. Melissa Haendel 2009-08-04T10:45:00Z TAO:0002207 mmX zebrafish_anatomy ZFA:0001696 medial motor nucleus of vagal nerve ZFA:0001696 Motor nucleus of vagal nerve that is located within the medial portion of rhombomere 8. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090417-11 Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites. Melissa Haendel 2009-08-04T01:04:59Z TAO:0002174 OLe cranial nerve VIII motor nucleus octaval nerve motor nuclei zebrafish_anatomy ZFA:0001697 octaval nerve motor nucleus ZFA:0001697 Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-061229-17 octaval nerve motor nuclei Octaval nerve motor nucleus that is initially located within rhombomere 6. Melissa Haendel 2009-08-04T01:21:34Z TAO:0002175 REN ROLE rostral cranial nerve VIII motor nucleus zebrafish_anatomy rostral efferent nuclei ZFA:0001698 rostral octaval nerve motor nucleus ZFA:0001698 Octaval nerve motor nucleus that is initially located within rhombomere 6. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-061229-17 REN ZFIN:ZDB-PUB-061229-17 rostral efferent nuclei ZFIN:ZDB-PUB-061229-17 Octaval nerve motor nucleus that is initially located within rhombomere 7. Melissa Haendel 2009-08-04T01:24:26Z TAO:0002176 CEN RELL rostral cranial nerve VIII motor nucleus zebrafish_anatomy caudal efferent nuclei ZFA:0001699 caudal octaval nerve motor nucleus ZFA:0001699 Octaval nerve motor nucleus that is initially located within rhombomere 7. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-061229-17 CEN ZFIN:ZDB-PUB-061229-17 caudal efferent nuclei ZFIN:ZDB-PUB-061229-17 Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen). Melissa Haendel 2009-08-05T12:54:11Z TAO:0002245 zebrafish_anatomy ZFA:0001700 tunica externa swim bladder ZFA:0001700 Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen). http://www.briancoad.com/Dictionary/T.htm Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen. Melissa Haendel 2009-08-05T12:55:22Z TAO:0002246 zebrafish_anatomy ZFA:0001701 tunica interna swim bladder ZFA:0001701 Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen. http://www.briancoad.com/Dictionary/T.htm Proliferative region that is part of the developing fin fold or fin. Melissa Haendel 2009-08-05T02:38:05Z TAO:0002146 zebrafish_anatomy ZFA:0001702 apical ectodermal ridge ZFA:0001702 Proliferative region that is part of the developing fin fold or fin. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium. Melissa Haendel 2009-08-05T03:22:18Z TAO:0002195 zebrafish_anatomy ZFA:0001703 epidermal placode ZFA:0001703 Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium. ZFIN:ZDB-PUB-081008-12 A portion of tissue that gives rise to the scale. At the initial stages the primordium is composed of an accumulation of fibroblast below the basil epidermis. As the primordium develops the epidermis over the fibroblast alters: the basal epidermal cells become cuboidal and narrow, the collagen matrix remodels and the hemidesmosomes disappear. Melissa Haendel 2009-08-05T03:35:05Z TAO:0002242 scale primordia zebrafish_anatomy scale placode ZFA:0001704 scale primordium ZFA:0001704 A portion of tissue that gives rise to the scale. At the initial stages the primordium is composed of an accumulation of fibroblast below the basil epidermis. As the primordium develops the epidermis over the fibroblast alters: the basal epidermal cells become cuboidal and narrow, the collagen matrix remodels and the hemidesmosomes disappear. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-081008-12 scale primordia Duct that is part of the inner ear and connects to the semicircular canals ending in the endolymphatic sac. Melissa Haendel 2009-08-11T09:15:55Z TAO:0002194 zebrafish_anatomy ZFA:0001705 endolymphatic duct ZFA:0001705 Duct that is part of the inner ear and connects to the semicircular canals ending in the endolymphatic sac. ZFIN:ZDB-PUB-090112-20 http://en.wikipedia.org/wiki/Endolymphatic_duct Portion of tissue that is part of the corpus cerebelli and contains Purkinje cells. Melissa Haendel 2009-08-11T09:41:06Z TAO:0002240 zebrafish_anatomy ZFA:0001706 Purkinje cell layer corpus cerebelli ZFA:0001706 Portion of tissue that is part of the corpus cerebelli and contains Purkinje cells. ZFIN:ZDB-PUB-090422-9 Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain. Melissa Haendel 2009-08-13T01:39:24Z TAO:0002156 zebrafish_anatomy ZFA:0001707 brainstem ZFA:0001707 Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain. ISBN:3764351209 CNS white matter that is part of the cerebellum. Melissa Haendel 2009-08-13T01:48:48Z TAO:0002183 cerebellar tracts/commissures zebrafish_anatomy ZFA:0001708 cerebellar white matter ZFA:0001708 CNS white matter that is part of the cerebellum. GOC:mh ORCiD:0000-0001-9114-8737 cerebellar tracts/commissures Portion of tissue that is part of the valvula cerebelli and contains Purkinje cells. Melissa Haendel 2009-08-13T03:00:08Z TAO:0002241 zebrafish_anatomy ZFA:0001709 Purkinje cell layer valvula cerebelli ZFA:0001709 Portion of tissue that is part of the valvula cerebelli and contains Purkinje cells. ZFIN:ZDB-PUB-090422-9 Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer. Melissa Haendel 2009-08-13T03:02:35Z TAO:0002210 mossy fibers zebrafish_anatomy ZFA:0001710 mossy fiber ZFA:0001710 Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer. ISBN:3764351209 ZFIN:ZDB-PUB-090422-9 mossy fibers Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli. Melissa Haendel 2009-08-13T03:18:48Z TAO:0002185 climbing fibers zebrafish_anatomy ZFA:0001711 climbing fiber ZFA:0001711 Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli. ISBN:3764351209 ZFIN:ZDB-PUB-090422-9 climbing fibers Portion of tissue that is part of the heart tube and will become the bulbus arteriosus. Melissa Haendel 2009-08-31T11:25:06Z TAO:0002230 zebrafish_anatomy ZFA:0001712 presumptive bulbus arteriosus ZFA:0001712 Portion of tissue that is part of the heart tube and will become the bulbus arteriosus. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites. Melissa Haendel 2009-08-13T04:32:51Z TAO:0002218 parallel fibers zebrafish_anatomy ZFA:0001713 parallel fiber ZFA:0001713 Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites. ISBN:3764351209 ZFIN:ZDB-PUB-090422-9 parallel fibers Portion of presumptive mesoderm fated to become ventral mesoderm. Determined by fate mapping. Melissa Haendel 2009-08-24T11:02:45Z TAO:0002235 zebrafish_anatomy ZFA:0001714 presumptive ventral mesoderm ZFA:0001714 Portion of presumptive mesoderm fated to become ventral mesoderm. Determined by fate mapping. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Portion of tissue within the otic vesicle that consists of a thin layer of otic epithelium covering a finger-shaped core of acellular matrix. Melissa Haendel 2009-08-25T10:45:23Z TAO:0002215 zebrafish_anatomy ZFA:0001715 otic vesicle protrusion ZFA:0001715 Portion of tissue within the otic vesicle that consists of a thin layer of otic epithelium covering a finger-shaped core of acellular matrix. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-090330-11 Otic vesicle protrusion that is initially ventrally located and then fuses with the lateral protrusion, giving rise to the pillar of the lateral semicircular canal. Melissa Haendel 2009-08-25T10:53:24Z TAO:0002216 zebrafish_anatomy ZFA:0001716 otic vesicle ventral protrusion ZFA:0001716 Otic vesicle protrusion that is initially ventrally located and then fuses with the lateral protrusion, giving rise to the pillar of the lateral semicircular canal. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-090330-11 Portion of tissue around which the semicircular canals flow. Melissa Haendel 2009-08-25T10:57:52Z TAO:0002223 zebrafish_anatomy ZFA:0001717 pillar of the semicircular canal ZFA:0001717 Portion of tissue around which the semicircular canals flow. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-383 Multi-tissue structure that is part of the heart tube and will become the cardiac atrium. Melissa Haendel 2009-08-25T12:20:59Z TAO:0002228 zebrafish_anatomy ZFA:0001718 presumptive atrium heart tube ZFA:0001718 Multi-tissue structure that is part of the heart tube and will become the cardiac atrium. ZFIN:ZDB-PUB-080218-11 Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle. Melissa Haendel 2009-08-25T12:21:18Z TAO:0002231 ZFA:0002231 zebrafish_anatomy ZFA:0001719 presumptive cardiac ventricle heart tube ZFA:0001719 Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle. ZFIN:ZDB-PUB-080218-11 Multi-tissue structure that is part of the primitive heart tube and will become the cardiac ventricle. Melissa Haendel 2009-08-25T01:10:23Z TAO:0002232 zebrafish_anatomy ZFA:0001720 presumptive cardiac ventricle primitive heart tube ZFA:0001720 Multi-tissue structure that is part of the primitive heart tube and will become the cardiac ventricle. ZFIN:ZDB-PUB-080218-11 Multi-tissue structure that is part of the primitive heart tube and will become the cardiac atrium. Melissa Haendel 2009-08-25T01:10:28Z TAO:0002229 zebrafish_anatomy ZFA:0001721 presumptive atrium primitive heart tube ZFA:0001721 Multi-tissue structure that is part of the primitive heart tube and will become the cardiac atrium. ZFIN:ZDB-PUB-080218-11 Portion of tissue that is part of the heart tube and will become the sinus venosus. Melissa Haendel 2009-08-31T11:40:57Z TAO:0002234 zebrafish_anatomy ZFA:0001722 presumptive sinus venosus ZFA:0001722 Portion of tissue that is part of the heart tube and will become the sinus venosus. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of tissue that is part of the heart tube and will become the atrioventricular canal. Melissa Haendel 2009-08-31T11:57:36Z TAO:0002227 zebrafish_anatomy ZFA:0001723 presumptive atrioventricular canal ZFA:0001723 Portion of tissue that is part of the heart tube and will become the atrioventricular canal. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of tissue that is part of the heart tube and will become the endocardium. Melissa Haendel 2009-08-31T01:21:44Z TAO:0002233 zebrafish_anatomy ZFA:0001724 presumptive endocardium ZFA:0001724 Portion of tissue that is part of the heart tube and will become the endocardium. GOC:cvs ORCiD:0000-0002-2244-7917 A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons. Melissa Haendel 2009-09-08T02:10:35Z CL:0002377 TAO:0002203 zebrafish_anatomy ZFA:0001725 Range covers Schwann cell precursor and immature Schwann cell, should be split and put into CL. immature Schwann cell ZFA:0001725 A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons. CL:curator ISBN:0721662544 Artery that extends horizontally across the brain midline which is fed by the caudal division of the internal carotid artery. Three pairs of central arteries extend from the basal communicating artery (BCA), the anterior, middle and posterior mesencephalic central arteries. The BCA does not correspond to the anterior communicating artery of the mammalian circle of Willis. The BCA is unpaired. TAO:0005000 BCA zebrafish_anatomy ZFA:0005000 basal communicating artery ZFA:0005000 Artery that extends horizontally across the brain midline which is fed by the caudal division of the internal carotid artery. Three pairs of central arteries extend from the basal communicating artery (BCA), the anterior, middle and posterior mesencephalic central arteries. The BCA does not correspond to the anterior communicating artery of the mammalian circle of Willis. The BCA is unpaired. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. TAO:0005001 PCA PCS caudal communicating segment posterior communicating segment of the basilar artery zebrafish_anatomy ZFA:0005001 posterior communicating artery ZFA:0005001 An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries. TAO:0005002 BA zebrafish_anatomy ZFA:0005002 basilar artery ZFA:0005002 Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110426-11 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the pharyngeal region. TAO:0005003 branchial vasculature zebrafish_anatomy branchial basket ZFA:0005003 pharyngeal vasculature ZFA:0005003 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the pharyngeal region. GOC:cvs ORCiD:0000-0002-2244-7917 Artery that is part of the pharyngeal arches. TAO:0005004 aortic arches branchial aortic arches zebrafish_anatomy ZFA:0005004 aortic arch ZFA:0005004 Artery that is part of the pharyngeal arches. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 aortic arches branchial aortic arches ZFIN:ZDB-PUB-080512-6 Aortic arch that is part of pharyngeal arch 1. The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aorta. TAO:0005005 AA1 mandibular aortic arch zebrafish_anatomy ZFA:0005005 aortic arch 1 ZFA:0005005 Aortic arch that is part of pharyngeal arch 1. The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aorta. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Aortic arch that is part of pharyngeal arch 2. Aortic arch 2 is paired and is a vestigial structure. TAO:0005006 AA2 hyoid aortic arch zebrafish_anatomy ZFA:0005006 aortic arch 2 ZFA:0005006 Aortic arch that is part of pharyngeal arch 2. Aortic arch 2 is paired and is a vestigial structure. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Aortic arch that is part of pharyngeal arch 3. The paired aortic arch 3 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult. TAO:0005007 AA3 zebrafish_anatomy ZFA:0005007 aortic arch 3 ZFA:0005007 Aortic arch that is part of pharyngeal arch 3. The paired aortic arch 3 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Aortic arch that is part of pharyngeal arch 4. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult. TAO:0005008 AA4 zebrafish_anatomy ZFA:0005008 aortic arch 4 ZFA:0005008 Aortic arch that is part of pharyngeal arch 4. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Aortic arch that is part of pharyngeal arch 5. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood. TAO:0005009 AA5 zebrafish_anatomy ZFA:0005009 aortic arch 5 ZFA:0005009 Aortic arch that is part of pharyngeal arch 5. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceed laterally in a ventral direction to drain into the paired primordial midbrain channels (PHBC). TAO:0005010 MCeV MeCV mid-cerebral vein middle cerebral vein zebrafish_anatomy ZFA:0005010 mid cerebral vein ZFA:0005010 The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceed laterally in a ventral direction to drain into the paired primordial midbrain channels (PHBC). GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 http://zfin.org/zf_info/zfbook/stages/hatch.html A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. TAO:0005011 pseudobranchial arteries zebrafish_anatomy ZFA:0005011 pseudobranchial artery ZFA:0005011 A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 pseudobranchial arteries Artery that enters the gill filament. TAO:0005012 AFA afferent filamental arteries zebrafish_anatomy ZFA:0005012 afferent filamental artery ZFA:0005012 Artery that enters the gill filament. GOC:cvs ORCiD:0000-0002-2244-7917 afferent filamental arteries The branch of the afferent branchial artery that continues posterodorsally. TAO:0005013 CCB zebrafish_anatomy ZFA:0005013 concurrent branch afferent branchial artery ZFA:0005013 The branch of the afferent branchial artery that continues posterodorsally. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 The anteroventral proceeding branch of the afferent branchial artery. TAO:0005014 RCB recurrent branch afferent branchial arteries zebrafish_anatomy ZFA:0005014 recurrent branch afferent branchial artery ZFA:0005014 The anteroventral proceeding branch of the afferent branchial artery. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 recurrent branch afferent branchial arteries Arterioles which take blood from the afferent filamental arteries to the gill lamella. TAO:0005015 AFL afferent lamellar arterioles zebrafish_anatomy ZFA:0005015 afferent lamellar arteriole ZFA:0005015 Arterioles which take blood from the afferent filamental arteries to the gill lamella. GOC:cvs ORCiD:0000-0002-2244-7917 afferent lamellar arterioles Aortic arch that is part of pharyngeal arch 6. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood. TAO:0005016 AA6 zebrafish_anatomy ZFA:0005016 aortic arch 6 ZFA:0005016 Aortic arch that is part of pharyngeal arch 6. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 The vessel between the anterior cerebral vein and the mid cerebral vein. TAO:0005017 PMBC zebrafish_anatomy ZFA:0005017 primordial midbrain channel ZFA:0005017 The vessel between the anterior cerebral vein and the mid cerebral vein. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Artery that exits the gill filament. TAO:0005018 EFA zebrafish_anatomy ZFA:0005018 efferent filamental artery ZFA:0005018 Artery that exits the gill filament. GOC:cvs ORCiD:0000-0002-2244-7917 Arterioles which take blood from the gill lamella to the efferent filamental arteries. TAO:0005019 ELA efferent lamellar arterioles zebrafish_anatomy ZFA:0005019 efferent lamellar arteriole ZFA:0005019 Arterioles which take blood from the gill lamella to the efferent filamental arteries. GOC:cvs ORCiD:0000-0002-2244-7917 efferent lamellar arterioles Artery that irrigates the forebrain and midbrain. TAO:0005020 CtA zebrafish_anatomy ZFA:0005020 central artery ZFA:0005020 Artery that irrigates the forebrain and midbrain. ZFIN:ZDB-PUB-010205-5 Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC. TAO:0005021 CCtA zebrafish_anatomy ZFA:0005021 cerebellar central artery ZFA:0005021 Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC. ZFIN:ZDB-PUB-010205-5 The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. TAO:0005022 ORA zebrafish_anatomy external carotid artery ZFA:0005022 opercular artery ZFA:0005022 The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 System responsible for generating hematopoietic cells. TAO:0005023 zebrafish_anatomy ZFA:0005023 hematopoietic system ZFA:0005023 System responsible for generating hematopoietic cells. GOC:cvs ORCiD:0000-0002-2244-7917 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around trunk. TAO:0005024 zebrafish_anatomy ZFA:0005024 trunk vasculature ZFA:0005024 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around trunk. GOC:cvs ORCiD:0000-0002-2244-7917 Paired trunk vessels that run medially along the dorsal-most portion of the trunk and post-vent region. The DLAVs are formed by the longitudinal anastomoses of the intersegmental vessels to form a right and left pair of dorsal longitudinal anastomotic vessels. These paired vessels remodel to form a single plexiform vessel beginning at 3dpf continuing until after 7dpf. The basilar artery connects to the DLAVs at the caudal end of the medulla oblongata. In the early embryo (2.5-3.5 dpf) the primitive hindbrain channels also connect to the DLAV. TAO:0005025 DLAV zebrafish_anatomy ZFA:0005025 Eventually half of the ISVs will carry blood from the aorta to the DLAVs, and half from the DLAV to the posterior cardinal vein. dorsal longitudinal anastomotic vessel ZFA:0005025 Paired trunk vessels that run medially along the dorsal-most portion of the trunk and post-vent region. The DLAVs are formed by the longitudinal anastomoses of the intersegmental vessels to form a right and left pair of dorsal longitudinal anastomotic vessels. These paired vessels remodel to form a single plexiform vessel beginning at 3dpf continuing until after 7dpf. The basilar artery connects to the DLAVs at the caudal end of the medulla oblongata. In the early embryo (2.5-3.5 dpf) the primitive hindbrain channels also connect to the DLAV. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. TAO:0005026 PHS lateral head vein zebrafish_anatomy ZFA:0005026 primary head sinus ZFA:0005026 Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. TAO:0005027 PCeV caudal cerebral vein zebrafish_anatomy ZFA:0005027 posterior cerebral vein ZFA:0005027 Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. ZFIN:ZDB-PUB-010205-5 Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf. TAO:0005028 DA-PCV joint DP joint aorta gonad mesonephros region dorsal aorta - posterior cardinal vein joint zebrafish_anatomy AGM DA roof ZFA:0005028 ventral wall of dorsal aorta ZFA:0005028 Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf. GOC:cvs ORCiD:0000-0002-2244-7917 dorsal aorta - posterior cardinal vein joint ZFIN:ZDB-PUB-061227-29 Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. TAO:0005029 RBI zebrafish_anatomy anterior myeloid compartment ZFA:0005029 rostral blood island ZFA:0005029 Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. GOC:cvs ORCiD:0000-0002-2244-7917 Vein that branches off the nasal ciliary artery. Initially, at 2dpf, the dorsal ciliary vein (DCV) drains into the primordial midbrain channel (PMBC) or the PMBC/PHBC junction. Later, by 3.5dpf, the DCV drains into the optic choroid vascular plexus. The dorsal branch of the inner optic circle drains into the DCV. TAO:0005030 DCV zebrafish_anatomy ZFA:0005030 dorsal ciliary vein ZFA:0005030 Vein that branches off the nasal ciliary artery. Initially, at 2dpf, the dorsal ciliary vein (DCV) drains into the primordial midbrain channel (PMBC) or the PMBC/PHBC junction. Later, by 3.5dpf, the DCV drains into the optic choroid vascular plexus. The dorsal branch of the inner optic circle drains into the DCV. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. TAO:0005031 DLV zebrafish_anatomy ZFA:0005031 dorsal longitudinal vein ZFA:0005031 Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. ZFIN:ZDB-PUB-010205-5 Vein that connects to the hyaloid vein that drains the eye. External to eye. TAO:0005032 OV zebrafish_anatomy ZFA:0005032 optic vein ZFA:0005032 Vein that connects to the hyaloid vein that drains the eye. External to eye. ZFIN:ZDB-PUB-010205-5 Is an pair of arteries that form from the intersegmental vessels at the level of the base of the spinal cord, adjacent to the myotome. TAO:0005033 vertebral arteries zebrafish_anatomy ZFA:0005033 vertebral artery ZFA:0005033 Is an pair of arteries that form from the intersegmental vessels at the level of the base of the spinal cord, adjacent to the myotome. ZFIN:ZDB-PUB-010205-5 vertebral arteries Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. TAO:0005034 PAV zebrafish_anatomy ZFA:0005034 parachordal vessel ZFA:0005034 Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-030908-4 Vein that drains the vascular plexus of the midgut and hindgut. At early stages the subintestinal vein (SIV) drains into the PCV and the CCV. At later stages the SIV drains into the hepatic sinusoid. The SIV are begin as paired veins. After 4dpf the remains of the left SIV forms separate segments that empty into the right SIV and eventually merge with the right. At 3dpf the rostral end of left SIV begins to form the reticular hepatic sinusoids. The portion of the left SIV caudal to the hepatic sinusoid forms the hepatic portal vein. TAO:0005035 SIV vitelline vein zebrafish_anatomy ZFA:0005035 subintestinal vein ZFA:0005035 Vein that drains the vascular plexus of the midgut and hindgut. At early stages the subintestinal vein (SIV) drains into the PCV and the CCV. At later stages the SIV drains into the hepatic sinusoid. The SIV are begin as paired veins. After 4dpf the remains of the left SIV forms separate segments that empty into the right SIV and eventually merge with the right. At 3dpf the rostral end of left SIV begins to form the reticular hepatic sinusoids. The portion of the left SIV caudal to the hepatic sinusoid forms the hepatic portal vein. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. TAO:0005036 SIA zebrafish_anatomy ZFA:0005036 supraintestinal artery ZFA:0005036 A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the post-vent region. This is frequently referred to as tail vasculature in the zebrafish community. TAO:0005037 zebrafish_anatomy tail vasculature ZFA:0005037 post-vent vasculature ZFA:0005037 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the post-vent region. This is frequently referred to as tail vasculature in the zebrafish community. GOC:cvs ORCiD:0000-0002-2244-7917 TAO:0005038 supraintestinal veins zebrafish_anatomy <new synonym> ZFA:0005038 supraintestinal vein ZFA:0005038 supraintestinal veins TAO:0005039 ALM zebrafish_anatomy ZFA:0005039 anterior lateral mesoderm ZFA:0005039 TAO:0005040 PLM zebrafish_anatomy ZFA:0005040 posterior lateral mesoderm ZFA:0005040 TAO:0005041 ALPM zebrafish_anatomy ZFA:0005041 anterior lateral plate mesoderm ZFA:0005041 TAO:0005042 PLPM zebrafish_anatomy ZFA:0005042 posterior lateral plate mesoderm ZFA:0005042 An ectopic melanophore accumulation analogous to a nevi (mole) in humans. TAO:0005043 f-nevi naevus zebrafish_anatomy ZFA:0005043 nevus ZFA:0005043 An ectopic melanophore accumulation analogous to a nevi (mole) in humans. GOC:cvs ORCiD:0000-0002-2244-7917 The artery that carries blood to the eye. It branches from the primitive internal carotid artery and enters the eye ventrally through the optic fissure. TAO:0005044 optic arteries zebrafish_anatomy ZFA:0005044 optic artery ZFA:0005044 The artery that carries blood to the eye. It branches from the primitive internal carotid artery and enters the eye ventrally through the optic fissure. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 optic arteries Artery that is internal to the eye. TAO:0005045 hyaloid arteries zebrafish_anatomy ZFA:0005045 hyaloid artery ZFA:0005045 Artery that is internal to the eye. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 hyaloid arteries Vessels that are associated with the posterior region of the lens. TAO:0005046 hyaloid vessels zebrafish_anatomy hyaloid vasculature ZFA:0005046 hyaloid vessel ZFA:0005046 Vessels that are associated with the posterior region of the lens. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 hyaloid vessels Vein internal to the eye. TAO:0005047 hyaloid veins zebrafish_anatomy ZFA:0005047 hyaloid vein ZFA:0005047 Vein internal to the eye. ZFIN:ZDB-PUB-010205-5 hyaloid veins Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. TAO:0005048 PPrA zebrafish_anatomy ZFA:0005048 primitive prosencephalic artery ZFA:0005048 Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. ZFIN:ZDB-PUB-010205-5 After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery. TAO:0005049 PrA zebrafish_anatomy ZFA:0005049 prosencephalic artery ZFA:0005049 After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery. GOC:cvs ORCiD:0000-0002-2244-7917 The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. TAO:0005050 PLA zebrafish_anatomy ZFA:0005050 palatocerebral artery ZFA:0005050 The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. ZFIN:ZDB-PUB-010205-5 Connect the palatocerebral artery with the prosencephalic artery. TAO:0005051 CMV communicating vessels zebrafish_anatomy ZFA:0005051 communicating vessel palatocerebral artery ZFA:0005051 Connect the palatocerebral artery with the prosencephalic artery. ZFIN:ZDB-PUB-010205-5 Arteries that irrigate rostral regions of the midbrain. They extend between the basal communicating artery to the anterior cerebral vein. TAO:0005052 AMCtA rostral mesencephalic central artery zebrafish_anatomy ZFA:0005052 anterior mesencephalic central artery ZFA:0005052 Arteries that irrigate rostral regions of the midbrain. They extend between the basal communicating artery to the anterior cerebral vein. ZFIN:ZDB-PUB-010205-5 Artery that branches off the cranial division of the internal carotid artery. It bifurcates near the eye. TAO:0005053 NCA zebrafish_anatomy ZFA:0005053 nasal ciliary artery ZFA:0005053 Artery that branches off the cranial division of the internal carotid artery. It bifurcates near the eye. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Vessel that circles the inner rim of the optic capsule. The inner optic circle drains ventrally into the optic vein and dorsally into the dorsal ciliary vein. TAO:0005054 IOC zebrafish_anatomy ZFA:0005054 inner optic circle ZFA:0005054 Vessel that circles the inner rim of the optic capsule. The inner optic circle drains ventrally into the optic vein and dorsally into the dorsal ciliary vein. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. TAO:0005055 MPLV zebrafish_anatomy ZFA:0005055 median palatocerebral vein ZFA:0005055 Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Vein that drains the median palatocerebral vein into the optic vein. TAO:0005056 PLV zebrafish_anatomy ZFA:0005056 palatocerebral vein ZFA:0005056 Vein that drains the median palatocerebral vein into the optic vein. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 External layer of the heart. TAO:0005057 zebrafish_anatomy ZFA:0005057 No evidence of epicardium layer in cardiac atrium in Hu et al 2001. epicardium ZFA:0005057 External layer of the heart. GOC:cvs ORCiD:0000-0002-2244-7917 The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. TAO:0005058 zebrafish_anatomy ZFA:0005058 ventricular epicardium ZFA:0005058 The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010912-30 The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences. TAO:0005059 zebrafish_anatomy trabecula ZFA:0005059 Cardiac conduction may occur in the trabecular layer via trabecular fibers, PMID: 12626327. trabecular layer ZFA:0005059 The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences. ZFIN:ZDB-PUB-010912-30 TAO:0005060 zebrafish_anatomy ZFA:0005060 trabecular layer of ventricle ZFA:0005060 Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer. TAO:0005061 zebrafish_anatomy ZFA:0005061 ventricular myocardium ZFA:0005061 Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010912-30 The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle. TAO:0005062 zebrafish_anatomy ZFA:0005062 compact layer of ventricle ZFA:0005062 The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Anatomical system located in the heart that initiates and propagates heart contraction. The cardiac pacemaker. TAO:0005063 cardiac pacemaker central conduction system zebrafish_anatomy ZFA:0005063 cardiac conduction system ZFA:0005063 Anatomical system located in the heart that initiates and propagates heart contraction. The cardiac pacemaker. GOC:cvs ORCiD:0000-0002-2244-7917 The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. TAO:0005064 zebrafish_anatomy ZFA:0005064 atrioventricular valve ZFA:0005064 The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010912-30 Multi-tissue structure composed of leaflets that separate parts of the heart, preventing blood backflow. TAO:0005065 heart valves zebrafish_anatomy ZFA:0005065 heart valve ZFA:0005065 Multi-tissue structure composed of leaflets that separate parts of the heart, preventing blood backflow. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 heart valves The portion of tissue that is the outer layer of the bulbus arteriosus. It is composed of scattered layers of interrupted elastic lamina. TAO:0005066 bulbus arteriosus externa zebrafish_anatomy ZFA:0005066 bulbus arteriosus outer layer ZFA:0005066 The portion of tissue that is the outer layer of the bulbus arteriosus. It is composed of scattered layers of interrupted elastic lamina. ZFIN:ZDB-PUB-010912-30 Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. TAO:0005067 bulbus arteriosus media zebrafish_anatomy ZFA:0005067 bulbus arteriosus middle layer ZFA:0005067 Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. ZFIN:ZDB-PUB-010912-30 Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. TAO:0005068 bulbus arteriosus intima zebrafish_anatomy ZFA:0005068 bulbus arteriosus inner layer ZFA:0005068 Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. ZFIN:ZDB-PUB-010912-30 Portion of tissue containing 3 and 30 cells in dorsal right quadrant of atrium that initiate heart beat. TAO:0005069 zebrafish_anatomy ZFA:0005069 sinoatrial node ZFA:0005069 Portion of tissue containing 3 and 30 cells in dorsal right quadrant of atrium that initiate heart beat. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101115-23 The portion of tissue in the atrioventricular canal that slows impulse propagation between the atrium and cardiac ventricle. TAO:0005070 AV node zebrafish_anatomy downstream pacemaker ZFA:0005070 atrioventricular node ZFA:0005070 The portion of tissue in the atrioventricular canal that slows impulse propagation between the atrium and cardiac ventricle. ZFIN:ZDB-PUB-060227-6 ZFA:0005059 TAO:0005071 HPS His-Purkinje system His-Purkinji network zebrafish_anatomy ZFA:0005071 Appears to be mammalian due to exact synonym His-Perkinje system, which doesn't have an exact analog in fish (or frogs). PMID:22984480 PLoS One. 2012;7(9):e44231. distal conduction system true ZFA:0005071 A portion of endocardial tissue that is part of the atrioventricular ring. TAO:0005072 zebrafish_anatomy ZFA:0005072 endocardial ring ZFA:0005072 A portion of endocardial tissue that is part of the atrioventricular ring. GOC:cvs ORCiD:0000-0002-2244-7917 A ring of conduction tissue that forms in the atrioventricular canal. TAO:0005073 AV ring zebrafish_anatomy ZFA:0005073 atrioventricular ring ZFA:0005073 A ring of conduction tissue that forms in the atrioventricular canal. ZFIN:ZDB-PUB-060227-6 Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods. TAO:0005074 zebrafish_anatomy ZFA:0005074 central cardiac conduction system ZFA:0005074 Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060227-6 Portion of the cardiac conduction system, with rapid impulse propagation. In the zebrafish fast conduction takes place in the trabecular layer. TAO:0005075 ventricular fast conduction system zebrafish_anatomy distal conduction system ZFA:0005075 peripheral cardiac conduction system ZFA:0005075 Portion of the cardiac conduction system, with rapid impulse propagation. In the zebrafish fast conduction takes place in the trabecular layer. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120927-27 ZFIN:ZDB-PUB-120928-25 ventricular fast conduction system ZFIN:ZDB-PUB-120927-27 Is a portion of tissue that will develop into vasculature. TAO:0005076 zebrafish_anatomy ZFA:0005076 primordial vasculature ZFA:0005076 Is a portion of tissue that will develop into vasculature. GOC:cvs ORCiD:0000-0002-2244-7917 The primordial vasculature that will develop into blood vessels by the process of tubulogenesis. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels. TAO:0005077 zebrafish_anatomy ZFA:0005077 vascular cord ZFA:0005077 The primordial vasculature that will develop into blood vessels by the process of tubulogenesis. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels. ZFIN:ZDB-PUB-040416-1 Projects rostrally and dorsally from the AMCtA to irrigate the midportion of the midbrain. TAO:0005078 MMCtA zebrafish_anatomy ZFA:0005078 middle mesencephalic central artery ZFA:0005078 Projects rostrally and dorsally from the AMCtA to irrigate the midportion of the midbrain. ZFIN:ZDB-PUB-010205-5 Project dorsally from BCA to irrigate the caudal part of midbrain. TAO:0005079 PMCtA caudal mesencephalic central artery zebrafish_anatomy ZFA:0005079 posterior mesencephalic central artery ZFA:0005079 Project dorsally from BCA to irrigate the caudal part of midbrain. ZFIN:ZDB-PUB-010205-5 An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery. TAO:0005080 AMA rostral mesenteric artery zebrafish_anatomy ZFA:0005080 anterior mesenteric artery ZFA:0005080 An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery. ZFIN:ZDB-PUB-010205-5 Artery that originates as rostral extensions of the dorsal aorta and travels through the hypophyseal fossa into the cranium. The internal carotid artery splits near the hypothalamus and optic nerve to form caudal and cranial divisions. TAO:0005081 ICA cranial carotid artery zebrafish_anatomy ZFA:0005081 Homologous to the human ICA ZDB-PUB-140605-9. internal carotid artery ZFA:0005081 Artery that originates as rostral extensions of the dorsal aorta and travels through the hypophyseal fossa into the cranium. The internal carotid artery splits near the hypothalamus and optic nerve to form caudal and cranial divisions. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140605-9 Branch of the nasal ciliary artery (NCA) that splits off of the NCA near the lens and forms the dorsal ciliary vein. TAO:0005082 dorsal branch nasal ciliary arteries zebrafish_anatomy ZFA:0005082 dorsal branch nasal ciliary artery ZFA:0005082 Branch of the nasal ciliary artery (NCA) that splits off of the NCA near the lens and forms the dorsal ciliary vein. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 dorsal branch nasal ciliary arteries TAO:0005083 zebrafish_anatomy ZFA:0005083 ventral branch nasal ciliary artery ZFA:0005083 These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. TAO:0005084 metencephalic arteries zebrafish_anatomy ZFA:0005084 metencephalic artery ZFA:0005084 These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 metencephalic arteries The nasal arteries start at the internal carotid artery and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. TAO:0005085 NA zebrafish_anatomy ZFA:0005085 nasal artery ZFA:0005085 The nasal arteries start at the internal carotid artery and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. ZFIN:ZDB-PUB-010205-5 The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch <a href='http://zfin.org/zf_info/zfbook/stages/hatch.html'> Kimmel et al. 1993</a>. TAO:0005086 PA subclavian artery zebrafish_anatomy ZFA:0005086 pectoral artery ZFA:0005086 The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch <a href='http://zfin.org/zf_info/zfbook/stages/hatch.html'> Kimmel et al. 1993</a>. GOC:cvs ORCiD:0000-0002-2244-7917 Vein from the pectoral fin that drains into the ACV just cranial to the ACV-CCV junction. TAO:0005087 PV zebrafish_anatomy ZFA:0005087 pectoral vein ZFA:0005087 Vein from the pectoral fin that drains into the ACV just cranial to the ACV-CCV junction. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery. TAO:0005088 PMA caudal mesenteric artery zebrafish_anatomy ZFA:0005088 posterior mesenteric artery ZFA:0005088 Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery. ZFIN:ZDB-PUB-010205-5 An elaborate set of vessels that branch off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder. TAO:0005089 SBA zebrafish_anatomy ZFA:0005089 swim bladder artery ZFA:0005089 An elaborate set of vessels that branch off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder. ZFIN:ZDB-PUB-010205-5 Vein that collects blood from the small intestine, pancreas and spleen and routes it through the liver. TAO:0005090 HPV zebrafish_anatomy primary hepatic portal vein ZFA:0005090 hepatic portal vein ZFA:0005090 Vein that collects blood from the small intestine, pancreas and spleen and routes it through the liver. GOC:cvs ORCiD:0000-0002-2244-7917 http://www.vivo.colostate.edu/hbooks/pathphys/digestion/liver/anatomy.html Wide thin-walled blood vessels in the liver. The terminal branches of the hepatic portal vein and hepatic artery empty into the sinusoids where the blood mixes. In mammals they have neither venous or arterial markers. Sinusoids are scattered throughout the parenchyma and appear small and round. TAO:0005091 hepatic sinusoids zebrafish_anatomy ZFA:0005091 hepatic sinusoid ZFA:0005091 Wide thin-walled blood vessels in the liver. The terminal branches of the hepatic portal vein and hepatic artery empty into the sinusoids where the blood mixes. In mammals they have neither venous or arterial markers. Sinusoids are scattered throughout the parenchyma and appear small and round. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090422-17 hepatic sinusoids Paired veins that sprout from the dorsal midline junction and dive ventrally. The mesencephalic veins are fed by the mesencephalic arteries, after 2.5 dpf, and drain into the dorsal longitudinal vessel after 5dpf. TAO:0005092 MsV zebrafish_anatomy ZFA:0005092 mesencephalic vein ZFA:0005092 Paired veins that sprout from the dorsal midline junction and dive ventrally. The mesencephalic veins are fed by the mesencephalic arteries, after 2.5 dpf, and drain into the dorsal longitudinal vessel after 5dpf. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Vein that is fed by the nasal artery. It rises dorsally around the front of the head, draining into the ACeV and eventually into the PMBC on either side. TAO:0005093 NV zebrafish_anatomy ZFA:0005093 nasal vein ZFA:0005093 Vein that is fed by the nasal artery. It rises dorsally around the front of the head, draining into the ACeV and eventually into the PMBC on either side. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina. ZFA:0005228 TAO:0005094 CVP choroid vasculature zebrafish_anatomy ZFA:0005094 optic choroid vascular plexus ZFA:0005094 Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010205-5 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the fin. TAO:0005095 zebrafish_anatomy ZFA:0005095 fin vasculature ZFA:0005095 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the fin. GOC:cvs ORCiD:0000-0002-2244-7917 Vasculature of the pectoral fin. TAO:0005096 zebrafish_anatomy ZFA:0005096 pectoral fin vasculature ZFA:0005096 Vasculature of the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the caudal fin. TAO:0005097 zebrafish_anatomy ZFA:0005097 caudal fin vasculature ZFA:0005097 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia. TAO:0005098 central ray arteries zebrafish_anatomy ZFA:0005098 central ray artery ZFA:0005098 Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031119-3 central ray arteries Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme. TAO:0005099 ray veins zebrafish_anatomy ZFA:0005099 ray vein ZFA:0005099 Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031119-3 ray veins Vessels that travel between artery and veins or vein and vein in a single ray. TAO:0005100 intervessel comisures zebrafish_anatomy ZFA:0005100 intervessel commissure ZFA:0005100 Vessels that travel between artery and veins or vein and vein in a single ray. GOC:cvs ORCiD:0000-0002-2244-7917 intervessel comisures Vessels that travel between veins in adjacent rays. TAO:0005101 interray vessels zebrafish_anatomy ZFA:0005101 interray vessel ZFA:0005101 Vessels that travel between veins in adjacent rays. GOC:cvs ORCiD:0000-0002-2244-7917 interray vessels Stripe of tissue fated to become the median fin fold. TAO:0005102 zebrafish_anatomy ZFA:0005102 presumptive median fin fold ZFA:0005102 Stripe of tissue fated to become the median fin fold. GOC:cvs ORCiD:0000-0002-2244-7917 Stripe of tissue on the ventral side of the fish, fated to become the ventral region of the median fin fold. TAO:0005103 zebrafish_anatomy ZFA:0005103 presumptive ventral fin fold ZFA:0005103 Stripe of tissue on the ventral side of the fish, fated to become the ventral region of the median fin fold. GOC:cvs ORCiD:0000-0002-2244-7917 Stripe of tissue on the dorsal side of the fish, fated to become the dorsal region of the median fin fold. TAO:0005104 zebrafish_anatomy ZFA:0005104 presumptive dorsal fin fold ZFA:0005104 Stripe of tissue on the dorsal side of the fish, fated to become the dorsal region of the median fin fold. GOC:cvs ORCiD:0000-0002-2244-7917 A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. The walls are mostly composed of single layer of irregularly shaped endothelial cells. Lymphatic vessels are usually classified as either superficial or deep. TAO:0005105 lymph vessels zebrafish_anatomy lymph vessel ZFA:0005105 lymph vasculature ZFA:0005105 A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. The walls are mostly composed of single layer of irregularly shaped endothelial cells. Lymphatic vessels are usually classified as either superficial or deep. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 ZFIN:ZDB-PUB-130218-10 lymph vessels TAO:0005106 LLL zebrafish_anatomy ZFA:0005106 longitudinal lateral lymphatic vessel ZFA:0005106 TAO:0005107 PL zebrafish_anatomy ZFA:0005107 pectoral lymphatic vessel ZFA:0005107 TAO:0005108 FL zebrafish_anatomy ZFA:0005108 Probably a deep lymph vessel. This vessel was shown in ZDB-PUB-060616-13 at 5 weeks post fertilization using Berlin blue dye lymphangiography. facial lymphatic vessel ZFA:0005108 Lymph vessel that connects the lateral facial lymph vessel to the thoracic duct near the common cardinal vein. TAO:0005109 JL JLV zebrafish_anatomy ZFA:0005109 jugular lymphatic vessel ZFA:0005109 Lymph vessel that connects the lateral facial lymph vessel to the thoracic duct near the common cardinal vein. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein. TAO:0005110 zebrafish_anatomy ZFA:0005110 thoracic duct ZFA:0005110 The thoracic duct is the first perfused lymphatic, located between the dorsal aorta and posterior cardinal vein. ZFIN:ZDB-PUB-100719-62 Tract that originates in the telencephalon lies medial to the lateral forebrain bundle and extends into the diencephalon approaching the posterior tuberal nucleus. In embryos the tract connects cells in the ventral olfactory bulb to those in the septal area. TAO:0005111 medial forebrain bundles zebrafish_anatomy ZFA:0005111 medial forebrain bundle ZFA:0005111 Tract that originates in the telencephalon lies medial to the lateral forebrain bundle and extends into the diencephalon approaching the posterior tuberal nucleus. In embryos the tract connects cells in the ventral olfactory bulb to those in the septal area. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-071219-12 ZFIN:ZDB-PUB-961014-1280 medial forebrain bundles One of eight distinct lateral lines in the 4-day larva. The dorsal lateral line runs along the dorsal side of the body and never extends beyond the dorsal fin. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0005112 dorsal lateral lines zebrafish_anatomy ZFA:0005112 dorsal lateral line ZFA:0005112 One of eight distinct lateral lines in the 4-day larva. The dorsal lateral line runs along the dorsal side of the body and never extends beyond the dorsal fin. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-070907-34 dorsal lateral lines Neuromast that is part of the dorsal lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) TAO:0005113 neuromast dorsal zebrafish_anatomy ZFA:0005113 dorsal lateral line neuromast ZFA:0005113 Neuromast that is part of the dorsal lateral line. (Also see Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-576 The middle lateral line system develops from cranial ectodermal placodes, that give rise to both the neuromasts and the middle lateral line sensory nerves that innervate the neuromasts. The middle lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body that are innervated by several lateral line nerves, which project to the hindbrain. The middle lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. TAO:0005114 zebrafish_anatomy ZFA:0005114 middle lateral line system ZFA:0005114 The middle lateral line system develops from cranial ectodermal placodes, that give rise to both the neuromasts and the middle lateral line sensory nerves that innervate the neuromasts. The middle lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body that are innervated by several lateral line nerves, which project to the hindbrain. The middle lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis. TAO:0005115 primI primary posterior lateral line primordia zebrafish_anatomy ZFA:0005115 primary posterior lateral line primordium ZFA:0005115 Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-040319-12 ZFIN:ZDB-PUB-040916-1 primary posterior lateral line primordia Second lateral line primordium. These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction. TAO:0005116 secondary posterior lateral line primordia zebrafish_anatomy ZFA:0005116 secondary posterior lateral line primordium ZFA:0005116 Second lateral line primordium. These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-040319-12 ZFIN:ZDB-PUB-040916-1 secondary posterior lateral line primordia A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration. TAO:0005117 anterior lateral line primordia zebrafish_anatomy ZFA:0005117 anterior lateral line primordium ZFA:0005117 A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration. GOC:cvs ORCiD:0000-0002-2244-7917 anterior lateral line primordia A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them. TAO:0005118 middle lateral line primordia zebrafish_anatomy ZFA:0005118 middle lateral line primordium ZFA:0005118 A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them. GOC:cvs ORCiD:0000-0002-2244-7917 middle lateral line primordia A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel. TAO:0005119 barbel primordia zebrafish_anatomy ZFA:0005119 barbel primordium ZFA:0005119 A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 barbel primordia The serous membrane that lines the peritoneal cavity. The peritoneum secretes serous fluid which allows free movement of the peritoneum and the intraperitoneal organs. TAO:0005120 zebrafish_anatomy ZFA:0005120 peritoneum ZFA:0005120 The serous membrane that lines the peritoneal cavity. The peritoneum secretes serous fluid which allows free movement of the peritoneum and the intraperitoneal organs. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Dorsolateral placode that gives rise to the middle lateral line. TAO:0005121 middle lateral line placodes zebrafish_anatomy ZFA:0005121 middle lateral line placode ZFA:0005121 Dorsolateral placode that gives rise to the middle lateral line. GOC:cvs ORCiD:0000-0002-2244-7917 middle lateral line placodes Dorsal region of the axial hypoblast. TAO:0005122 zebrafish_anatomy ZFA:0005122 dorsal axial hypoblast ZFA:0005122 Dorsal region of the axial hypoblast. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Epithelium lining the lumen of the gut. TAO:0005123 zebrafish_anatomy ZFA:0005123 gut epithelium ZFA:0005123 Epithelium lining the lumen of the gut. GOC:cvs ORCiD:0000-0002-2244-7917 Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. TAO:0005124 intestine epithelium villous epithelium zebrafish_anatomy ZFA:0005124 intestinal epithelium ZFA:0005124 Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. ZFIN:ZDB-PUB-050209-3 villous epithelium ZFIN:ZDB-PUB-090217-11 The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. TAO:0005125 intestinal villi zebrafish_anatomy ZFA:0005125 intestinal villus ZFA:0005125 The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. ZFIN:ZDB-PUB-050209-3 intestinal villi Intestinal epithelium which lines the lumen of the intestinal bulb. TAO:0005126 zebrafish_anatomy ZFA:0005126 intestinal bulb epithelium ZFA:0005126 Intestinal epithelium which lines the lumen of the intestinal bulb. GOC:cvs ORCiD:0000-0002-2244-7917 Intestinal epithelium which lines the lumen of the mid intestine. TAO:0005127 zebrafish_anatomy ZFA:0005127 mid intestine epithelium ZFA:0005127 Intestinal epithelium which lines the lumen of the mid intestine. GOC:cvs ORCiD:0000-0002-2244-7917 Intestinal epithelium which lines the lumen of the posterior intestine. TAO:0005128 zebrafish_anatomy ZFA:0005128 posterior intestine epithelium ZFA:0005128 Intestinal epithelium which lines the lumen of the posterior intestine. GOC:cvs ORCiD:0000-0002-2244-7917 A double layer composed of peritoneum that attaches the visceral organs to the body wall. TAO:0005129 zebrafish_anatomy ZFA:0005129 mesentery ZFA:0005129 A double layer composed of peritoneum that attaches the visceral organs to the body wall. GOC:cvs ORCiD:0000-0002-2244-7917 The mesentery that originates from the dorsal side of the peritoneal cavity. TAO:0005130 zebrafish_anatomy ZFA:0005130 dorsal mesentery ZFA:0005130 The mesentery that originates from the dorsal side of the peritoneal cavity. GOC:cvs ORCiD:0000-0002-2244-7917 The peritoneum that lines the walls of the peritoneal cavity. TAO:0005131 zebrafish_anatomy ZFA:0005131 parietal peritoneum ZFA:0005131 The peritoneum that lines the walls of the peritoneal cavity. GOC:cvs ORCiD:0000-0002-2244-7917 The part of peritoneum that is a serous membrane covers the external surfaces of most abdominal organs. TAO:0005132 zebrafish_anatomy tunica serosa ZFA:0005132 visceral peritoneum ZFA:0005132 The part of peritoneum that is a serous membrane covers the external surfaces of most abdominal organs. GOC:cvs ORCiD:0000-0002-2244-7917 tunica serosa http:/www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html The mesentery that originates from the ventral side of the peritoneal cavity. TAO:0005133 zebrafish_anatomy ZFA:0005133 ventral mesentery ZFA:0005133 The mesentery that originates from the ventral side of the peritoneal cavity. GOC:cvs ORCiD:0000-0002-2244-7917 Epithelium that is part of a developing tooth or dental organ. TAO:0005134 dental epithelia zebrafish_anatomy ZFA:0005134 dental epithelium ZFA:0005134 Epithelium that is part of a developing tooth or dental organ. GOC:cvs ORCiD:0000-0002-2244-7917 dental epithelia Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth. TAO:0005135 pharyngeal tooth epithelium tooth epithelium zebrafish_anatomy ZFA:0005135 primary dental epithelium ZFA:0005135 Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth. GOC:cvs ORCiD:0000-0002-2244-7917 Inner layer of the dental organ, composed of ameloblasts. TAO:0005136 ide inner enamel epithelium zebrafish_anatomy ZFA:0005136 inner dental epithelium ZFA:0005136 Inner layer of the dental organ, composed of ameloblasts. GOC:cvs ORCiD:0000-0002-2244-7917 Outer layer of the dental organ. TAO:0005137 ode zebrafish_anatomy ZFA:0005137 outer dental epithelium ZFA:0005137 Outer layer of the dental organ. GOC:cvs ORCiD:0000-0002-2244-7917 A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth. TAO:0005138 enamel organ zebrafish_anatomy ZFA:0005138 dental organ ZFA:0005138 A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-001208-4 Mesenchyme enclosed by dental organ. TAO:0005139 zebrafish_anatomy ZFA:0005139 dental mesenchyme ZFA:0005139 Mesenchyme enclosed by dental organ. GOC:cvs ORCiD:0000-0002-2244-7917 Tissue of the developing tooth. It is composed of pre-odontoblast and undifferentiated mesenchyme cells and connects to the basal lamina. TAO:0005140 pharyngeal tooth mesenchyme tooth mesenchyme zebrafish_anatomy ZFA:0005140 dental papilla ZFA:0005140 Tissue of the developing tooth. It is composed of pre-odontoblast and undifferentiated mesenchyme cells and connects to the basal lamina. GOC:cvs ORCiD:0000-0002-2244-7917 Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast. TAO:0005141 zebrafish_anatomy ZFA:0005141 tooth pulp ZFA:0005141 Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast. GOC:cvs ORCiD:0000-0002-2244-7917 A dentine-like hypermineralized substance that covers the zebrafish tooth tip. TAO:0005142 zebrafish_anatomy enamel ZFA:0005142 enameloid ZFA:0005142 A dentine-like hypermineralized substance that covers the zebrafish tooth tip. GOC:cvs ORCiD:0000-0002-2244-7917 Mineralized collagen containing substance that forms the tooth structure. The dentine of first-generation teeth of zebrafish is entirely atubular. TAO:0005143 dentin zebrafish_anatomy ZFA:0005143 dentine ZFA:0005143 Mineralized collagen containing substance that forms the tooth structure. The dentine of first-generation teeth of zebrafish is entirely atubular. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-001208-4 Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris. TAO:0005144 ampullary nerves zebrafish_anatomy ZFA:0005144 ampullary nerve ZFA:0005144 Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris. GOC:cvs ORCiD:0000-0002-2244-7917 ampullary nerves Portion of tissue composed of contractile fibers. TAO:0005145 muscles zebrafish_anatomy ZFA:0005145 muscle ZFA:0005145 Portion of tissue composed of contractile fibers. GOC:cvs ORCiD:0000-0002-2244-7917 muscles An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. TAO:0005146 zebrafish_anatomy ZFA:0005146 area postrema ZFA:0005146 An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. ZFIN:ZDB-PUB-970602-2 A portion of tissue that is regrowing after damage or amputation. TAO:0005147 regenerating tissues zebrafish_anatomy ZFA:0005147 regenerating tissue ZFA:0005147 A portion of tissue that is regrowing after damage or amputation. GOC:cvs ORCiD:0000-0002-2244-7917 regenerating tissues Part of the regeneration epithelium closest to the fin. TAO:0005148 apical epidermal caps zebrafish_anatomy ZFA:0005148 apical epidermal cap ZFA:0005148 Part of the regeneration epithelium closest to the fin. GOC:cvs ORCiD:0000-0002-2244-7917 apical epidermal caps Part of regeneration epithelium at the tip of the fin. TAO:0005149 distal epidermal caps zebrafish_anatomy ZFA:0005149 distal epidermal cap ZFA:0005149 Part of regeneration epithelium at the tip of the fin. GOC:cvs ORCiD:0000-0002-2244-7917 distal epidermal caps Layer of the wound epidermis that surrounds the blastema. TAO:0005150 basal wound epidermis zebrafish_anatomy ZFA:0005150 basal regeneration epithelium ZFA:0005150 Layer of the wound epidermis that surrounds the blastema. GOC:cvs ORCiD:0000-0002-2244-7917 Iridescent iridophore containing gold reflecting platelets. Ceri 2009-03-12T12:34:16Z TAO:0005151 zebrafish_anatomy ZFA:0005151 gold iridophore ZFA:0005151 Iridescent iridophore containing gold reflecting platelets. GOC:cvs ORCiD:0000-0002-2244-7917 Iridescent iridophore containing silver reflecting platelets. Ceri 2009-03-12T12:48:18Z TAO:0005152 zebrafish_anatomy ZFA:0005152 silver iridophore ZFA:0005152 Iridescent iridophore containing silver reflecting platelets. GOC:cvs ORCiD:0000-0002-2244-7917 Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces. Ceri 2009-03-12T01:31:49Z TAO:0005153 diarthroses zebrafish_anatomy diarthrodial joints ZFA:0005153 synovial joint ZFA:0005153 Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of organism substance that is a clear fluid that occupies the space in synovial joints. Ceri 2009-03-12T01:42:07Z TAO:0005154 zebrafish_anatomy ZFA:0005154 synovial fluid ZFA:0005154 Portion of organism substance that is a clear fluid that occupies the space in synovial joints. GOC:cvs ORCiD:0000-0002-2244-7917 Is a joint where the ends of two bones are connected by cartilage. Ceri 2009-03-12T01:52:52Z TAO:0005155 synchondrosis zebrafish_anatomy ZFA:0005155 cartilaginous joint ZFA:0005155 Is a joint where the ends of two bones are connected by cartilage. GOC:cvs ORCiD:0000-0002-2244-7917 A joint where fibrous tissue such as ligament connects two calcified tissues. Ceri 2009-03-12T01:54:12Z TAO:0005156 syndesmoses syndesmosis zebrafish_anatomy ZFA:0005156 fibrous joint ZFA:0005156 A joint where fibrous tissue such as ligament connects two calcified tissues. GOC:cvs ORCiD:0000-0002-2244-7917 syndesmoses Tela chorioidea that lines the tectal ventricle. Ceri 2009-04-02T01:30:05Z TAO:0005157 tela choroidea tectal ventricle zebrafish_anatomy ZFA:0005157 tela chorioidea tectal ventricle ZFA:0005157 Tela chorioidea that lines the tectal ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Tela chorioidea that lines the fourth ventricle. Ceri 2009-04-02T01:40:34Z TAO:0005158 tela choroidea fourth ventricle zebrafish_anatomy ZFA:0005158 tela chorioidea fourth ventricle ZFA:0005158 Tela chorioidea that lines the fourth ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Tela chorioidea that lines the third ventricle. Ceri 2009-04-02T02:04:56Z TAO:0005159 tela choroidea third ventricle zebrafish_anatomy ZFA:0005159 tela chorioidea third ventricle ZFA:0005159 Tela chorioidea that lines the third ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Tela chorioidea that lines the telencephalic ventricle. Ceri 2009-04-02T02:20:33Z TAO:0005160 tela choroidea telencephalic ventricle zebrafish_anatomy ZFA:0005160 tela chorioidea telencephalic ventricle ZFA:0005160 Tela chorioidea that lines the telencephalic ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 Artery that supplies blood to the liver. Ceri 2009-04-20T03:43:46Z TAO:0005161 zebrafish_anatomy ZFA:0005161 hepatic artery ZFA:0005161 Artery that supplies blood to the liver. GOC:cvs ORCiD:0000-0002-2244-7917 Ducts that transport enzymes between organs in the digestive system. Ceri 2009-04-20T04:51:36Z TAO:0005162 zebrafish_anatomy ZFA:0005162 digestive system duct ZFA:0005162 Ducts that transport enzymes between organs in the digestive system. GOC:cvs ORCiD:0000-0002-2244-7917 Intercellular space surrounded by the basal surface of the hepatocytes that collect bile. Ceri 2009-04-20T05:33:42Z TAO:0005163 zebrafish_anatomy ZFA:0005163 Should be located in rather then part_of when we get the appropriate relation. bile canaliculus ZFA:0005163 Intercellular space surrounded by the basal surface of the hepatocytes that collect bile. GOC:cvs ORCiD:0000-0002-2244-7917 Digestive system duct that collects bile from the canaliculus and transports bile through the liver. Ceri 2009-04-20T05:39:12Z TAO:0005164 zebrafish_anatomy ZFA:0005164 bile ductule ZFA:0005164 Digestive system duct that collects bile from the canaliculus and transports bile through the liver. GOC:cvs ORCiD:0000-0002-2244-7917 Digestive system duct that collects bile from the hepatic bile duct and the cystic duct. Ceri 2009-04-20T05:43:23Z TAO:0005165 zebrafish_anatomy ZFA:0005165 common bile duct ZFA:0005165 Digestive system duct that collects bile from the hepatic bile duct and the cystic duct. GOC:cvs ORCiD:0000-0002-2244-7917 Duct that connects the gall bladder and the common bile duct. Ceri 2009-04-20T05:56:39Z TAO:0005166 zebrafish_anatomy ZFA:0005166 cystic duct ZFA:0005166 Duct that connects the gall bladder and the common bile duct. GOC:cvs ORCiD:0000-0002-2244-7917 Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine. Ceri 2009-04-20T05:59:27Z TAO:0005167 ampulla of Vater papilla Vateri zebrafish_anatomy papilla duodeni major ZFA:0005167 hepatopancreatic ampulla ZFA:0005167 Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine. ZFIN:ZDB-PUB-070212-11 ZFIN:ZDB-PUB-080414-12 Vein that is central to a lobule in the liver. Ceri 2009-04-21T02:46:13Z TAO:0005168 zebrafish_anatomy ZFA:0005168 central vein ZFA:0005168 Vein that is central to a lobule in the liver. GOC:cvs ORCiD:0000-0002-2244-7917 Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct. Ceri 2009-04-27T04:19:40Z TAO:0005169 zebrafish_anatomy ZFA:0005169 intrahepatic bile duct ZFA:0005169 Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct. GOC:cvs ORCiD:0000-0002-2244-7917 Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct. Ceri 2009-04-27T04:26:36Z TAO:0005170 zebrafish_anatomy ZFA:0005170 extrahepatic duct ZFA:0005170 Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct. GOC:cvs ORCiD:0000-0002-2244-7917 A tube shaped multi-tissue structure lined with epithelial cells that collects secretions and routes them to their destination. Ceri 2009-04-27T04:45:59Z TAO:0005171 zebrafish_anatomy ZFA:0005171 duct ZFA:0005171 A tube shaped multi-tissue structure lined with epithelial cells that collects secretions and routes them to their destination. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of the liver which develops on the fish's left side. Ceri 2009-04-27T05:51:33Z TAO:0005172 1st lobe first lobe zebrafish_anatomy ZFA:0005172 left liver lobe ZFA:0005172 Portion of the liver which develops on the fish's left side. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of the liver which develops on the fish's right side adjacent to the gall bladder. Ceri 2009-04-27T05:59:16Z TAO:0005173 2nd lobe gall bladder lobe second lobe zebrafish_anatomy ZFA:0005173 right liver lobe ZFA:0005173 Portion of the liver which develops on the fish's right side adjacent to the gall bladder. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of the liver which develops on the fish's ventral side. Ceri 2009-04-27T06:04:51Z TAO:0005174 3rd lobe third lobe zebrafish_anatomy ZFA:0005174 ventral liver lobe ZFA:0005174 Portion of the liver which develops on the fish's ventral side. GOC:cvs ORCiD:0000-0002-2244-7917 An interneuron in the spinal cord. CoPA are bipolar with "T" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. These neurons are glutamatergic. Ceri 2009-06-18T01:41:54Z TAO:0005175 primary commissural interneuron zebrafish_anatomy ZFA:0005175 This term is a leaf node in the zebrafish AO and is not in the CL. CoPA ZFA:0005175 An interneuron in the spinal cord. CoPA are bipolar with "T" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. These neurons are glutamatergic. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-010807-17 ZFIN:ZDB-PUB-230515-30 ZFIN:ZDB-PUB-961014-274 ZFIN:ZDB-PUB-961014-649 An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. These neurons are glutamatergic and glycinergic. Ceri 2009-06-18T02:07:49Z TAO:0005176 secondary commissural interneuron zebrafish_anatomy ZFA:0005176 This term is a leaf node in the zebrafish AO and is not in the CL. CoSA ZFA:0005176 An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. These neurons are glutamatergic and glycinergic. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-010807-17 ZFIN:ZDB-PUB-230515-30 ZFIN:ZDB-PUB-961014-649 An interneuron of the spinal cord. VeLD neurons have an ipsilateral longitudinal axon. Ceri 2009-06-18T02:14:18Z TAO:0005177 ventral longitudinal interneuron zebrafish_anatomy V2b interneuron ZFA:0005177 This term is a leaf node in the zebrafish AO and is not in the CL. VeLD ZFA:0005177 An interneuron of the spinal cord. VeLD neurons have an ipsilateral longitudinal axon. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-649 An interneuron of the spinal cord. These are ascending and glycinergic. Ceri 2009-06-18T02:21:58Z TAO:0005178 dorsal longitudinal interneuron zebrafish_anatomy ZFA:0005178 This term is a leaf node in the zebrafish AO and is not in the CL. DoLA ZFA:0005178 An interneuron of the spinal cord. These are ascending and glycinergic. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-230515-30 ZFIN:ZDB-PUB-961014-649 A primary motor neuron that is part of the spinal cord. The axon turns caudally and dorsally, coursing between the surface of the spinal cord and the medial surface of the axial muscles to the dorsal median septum. The MiP axon then extends dorsally to the surface of the muscle, where it turns to arborize ventrally over the lateral surface of the axial muscle. Ceri 2009-06-18T04:02:28Z TAO:0005179 middle primary motoneuron zebrafish_anatomy ZFA:0005179 This term is a leaf node in the zebrafish AO and is not in the CL. MiP motor neuron ZFA:0005179 A primary motor neuron that is part of the spinal cord. The axon turns caudally and dorsally, coursing between the surface of the spinal cord and the medial surface of the axial muscles to the dorsal median septum. The MiP axon then extends dorsally to the surface of the muscle, where it turns to arborize ventrally over the lateral surface of the axial muscle. ZFIN:ZDB-PUB-961014-1247 ZFIN:ZDB-PUB-961014-272 ZFIN:ZDB-PUB-961014-814 A primary motoneuron that is part of the spinal cord. The axon of the CaP motoneuron on emerging from the ventral root. At the horizontal septum, however, the RoP axon turns laterally to extend within the horizontal septum to the lateral surface of the muscle. Ceri 2009-06-18T04:05:40Z TAO:0005180 rostral primary motoneuron zebrafish_anatomy ZFA:0005180 This term is a leaf node in the zebrafish AO and is not in the CL. RoP motor neuron ZFA:0005180 A primary motoneuron that is part of the spinal cord. The axon of the CaP motoneuron on emerging from the ventral root. At the horizontal septum, however, the RoP axon turns laterally to extend within the horizontal septum to the lateral surface of the muscle. ZFIN:ZDB-PUB-961014-1247 ZFIN:ZDB-PUB-961014-272 ZFIN:ZDB-PUB-961014-814 A primary motor neuron of the spinal cord. This cell is present in slightly less than half of the trunk hemisegments. Additionally, this cell has at least 2 different fates: it may become a primary motoneuron and arborize in an exclusive muscle territory, or it may die during embryonic development. Ceri 2009-06-18T04:38:21Z TAO:0005181 variable primary motoneuron zebrafish_anatomy ZFA:0005181 This term is a leaf node in the zebrafish AO and is not in the CL. VaP motor neuron ZFA:0005181 A primary motor neuron of the spinal cord. This cell is present in slightly less than half of the trunk hemisegments. Additionally, this cell has at least 2 different fates: it may become a primary motoneuron and arborize in an exclusive muscle territory, or it may die during embryonic development. ZFIN:ZDB-PUB-961014-265 ZFIN:ZDB-PUB-961014-276 true ZFA:0005182 Hindbrain interneuron that is part of rhombomere 5 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral. Ceri 2009-06-18T05:05:22Z TAO:0005183 middle dorsal 2 ipsilateral interneuron zebrafish_anatomy ZFA:0005183 This term is a leaf node in the zebrafish AO and is not in the CL. MiD2i ZFA:0005183 Hindbrain interneuron that is part of rhombomere 5 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus. Ceri 2009-06-18T05:16:33Z TAO:0005184 middle dorsal 2 contralateral llf interneuron zebrafish_anatomy ZFA:0005184 This term is a leaf node in the zebrafish AO and is not in the CL. MiD2cl ZFA:0005184 Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus. Ceri 2009-06-18T05:18:53Z TAO:0005185 middle dorsal 2 contralateral mlf interneuron zebrafish_anatomy ZFA:0005185 This term is a leaf node in the zebrafish AO and is not in the CL. MiD2cm ZFA:0005185 Hindbrain interneuron, part of rhombomere 5, with one dorsal, caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus. ZFIN:ZDB-PUB-961014-770 A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body. Ceri 2009-06-23T11:38:16Z TAO:0005186 bifurcate commissural interneuron zebrafish_anatomy ZFA:0005186 This term is a leaf node in the zebrafish AO and is not in the CL. This may be the same as CoBL. CoB ZFA:0005186 A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-649 Hindbrain interneuron that is part of rhombomere 4, with one medial neuron in each hemi-rhombomere. Ceri 2009-06-23T12:31:49Z TAO:0005187 middle medial interneuron zebrafish_anatomy ZFA:0005187 MiM1 ZFA:0005187 Hindbrain interneuron that is part of rhombomere 4, with one medial neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 4 with one rostral neuron in each hemi-rhombomere. Ceri 2009-06-23T12:33:39Z TAO:0005188 middle rostral 1 interneuron zebrafish_anatomy ZFA:0005188 MiR1 ZFA:0005188 Hindbrain interneuron that is part of rhombomere 4 with one rostral neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 5 with one rostral neuron in each hemi-rhombomere. Ceri 2009-06-23T12:40:02Z TAO:0005189 middle rostral 2 interneuron zebrafish_anatomy ZFA:0005189 MiR2 ZFA:0005189 Hindbrain interneuron that is part of rhombomere 5 with one rostral neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 4 with six ventral neurons in each hemi-rhombomere. Ceri 2009-06-23T01:10:53Z TAO:0005190 middle ventral 1 neuron zebrafish_anatomy ZFA:0005190 MiV1 ZFA:0005190 Hindbrain interneuron that is part of rhombomere 4 with six ventral neurons in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 5 with five ventral neurons in each hemi-rhombomere. Ceri 2009-06-23T01:15:56Z TAO:0005191 middle ventral 2 neuron zebrafish_anatomy ZFA:0005191 MiV2 ZFA:0005191 Hindbrain interneuron that is part of rhombomere 5 with five ventral neurons in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 2 with two intermediate-caudal neurons in each hemi-rhombomere. Ceri 2009-06-23T02:39:18Z TAO:0005192 rostral intermediate 2 caudal interneuron zebrafish_anatomy ZFA:0005192 RoI2C ZFA:0005192 Hindbrain interneuron that is part of rhombomere 2 with two intermediate-caudal neurons in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 2 with one intermediate-rostral neuron in each hemi-rhombomere. Ceri 2009-06-23T03:08:46Z TAO:0005193 rostral intermediate 2 rostral interneuron zebrafish_anatomy ZFA:0005193 RoI2R ZFA:0005193 Hindbrain interneuron that is part of rhombomere 2 with one intermediate-rostral neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 1 with twelve neurons in each hemi-rhombomere. Axon runs in the dorsal spinal cord. The RoL1 stem axon projects ipsilaterally along the brain stem and spinal cord. From the more lateral location of its spinal axon, RoL1's collaterals projected both ventrally and medially. The branching of RoL1 collaterals within the medulla, occur at multiple levels. Ceri 2009-06-23T03:22:51Z TAO:0005194 rostral lateral 1 interneuron zebrafish_anatomy ZFA:0005194 May have 12 neurons in each hemi rhombomere ZDB-PUB-060217-9. 7 neurons in each hemi rhombomere 080227-17 and 931014-770. RoL1 ZFA:0005194 Hindbrain interneuron that is part of rhombomere 1 with twelve neurons in each hemi-rhombomere. Axon runs in the dorsal spinal cord. The RoL1 stem axon projects ipsilaterally along the brain stem and spinal cord. From the more lateral location of its spinal axon, RoL1's collaterals projected both ventrally and medially. The branching of RoL1 collaterals within the medulla, occur at multiple levels. ZFIN:ZDB-PUB-030319-6 ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron, part of rhombomere 6, with one caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus. Ceri 2009-06-22T05:10:40Z TAO:0005195 middle dorsal 3 contralateral llf interneuron zebrafish_anatomy ZFA:0005195 This term is a leaf node in the zebrafish AO and is not in the CL. MiD3cl ZFA:0005195 Hindbrain interneuron, part of rhombomere 6, with one caudal-lateral neuron in each hemi-rhombomere. The fibers pass through the lateral longitudinal fasciculus. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron, part of rhombomere 6, with one caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus. Ceri 2009-06-22T05:13:02Z TAO:0005196 middle dorsal 3 contralateral mlf interneuron zebrafish_anatomy ZFA:0005196 This term is a leaf node in the zebrafish AO and is not in the CL. MiD3cm ZFA:0005196 Hindbrain interneuron, part of rhombomere 6, with one caudal-medial neuron in each hemi-rhombomere. The fibers pass through the medial longitudinal fasciculus. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 6 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral. Ceri 2009-06-22T05:15:04Z TAO:0005197 middle dorsal 3 ipsilateral interneuron zebrafish_anatomy ZFA:0005197 This term is a leaf node in the zebrafish AO and is not in the CL. MiD3i ZFA:0005197 Hindbrain interneuron that is part of rhombomere 6 with one dorsal neuron in each hemi-rhombomere. The axonal projection is ipsilateral. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 2 with 4 lateral neurons in each hemi-rhombomere. Ceri 2009-06-26T04:33:20Z TAO:0005198 rostral lateral 2 interneuron zebrafish_anatomy ZFA:0005198 RoL2 ZFA:0005198 Hindbrain interneuron that is part of rhombomere 2 with 4 lateral neurons in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 The rostral RoL2 interneuron that is part of rhombomere 2. Ceri 2009-06-26T04:48:39Z TAO:0005199 rostral lateral 2 rostral interneuron zebrafish_anatomy ZFA:0005199 RoL2r ZFA:0005199 The rostral RoL2 interneuron that is part of rhombomere 2. ZFIN:ZDB-PUB-090217-9 The caudal RoL2 interneuron that is part of rhombomere 2. Ceri 2009-06-26T04:49:28Z TAO:0005200 rostral lateral 2 caudal interneuron zebrafish_anatomy ZFA:0005200 RoL2c ZFA:0005200 The caudal RoL2 interneuron that is part of rhombomere 2. ZFIN:ZDB-PUB-090217-9 Hindbrain interneuron that is part of rhombomere 3 with 1 lateral neuron in each hemi-rhombomere. Ceri 2009-06-26T05:06:36Z TAO:0005201 rostral lateral 3 interneuron zebrafish_anatomy ZFA:0005201 RoL3 ZFA:0005201 Hindbrain interneuron that is part of rhombomere 3 with 1 lateral neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 1 with one medial-caudal neuron in each hemi-rhombomere. Ceri 2009-06-26T05:08:26Z TAO:0005202 rostral medial 1 caudal interneuron zebrafish_anatomy ZFA:0005202 RoM1c ZFA:0005202 Hindbrain interneuron that is part of rhombomere 1 with one medial-caudal neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 1 with one medial-rostral neuron in each hemi-rhombomere. Ceri 2009-06-26T05:09:50Z TAO:0005203 rostral medial 1 rostral interneuron zebrafish_anatomy ZFA:0005203 RoM1r ZFA:0005203 Hindbrain interneuron that is part of rhombomere 1 with one medial-rostral neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 3 with three ventral neurons in each hemi-rhombomere. Ceri 2009-06-29T02:14:08Z rostral ventral 3 interneuron zebrafish_anatomy ZFA:0005204 RoV3 ZFA:0005204 Hindbrain interneuron that is part of rhombomere 3 with three ventral neurons in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 2 with one medial-lateral neuron in each hemi-rhombomere. Ceri 2009-06-29T02:43:42Z TAO:0005205 rostral medial 2 lateral interneuron zebrafish_anatomy ZFA:0005205 RoM2l ZFA:0005205 Hindbrain interneuron that is part of rhombomere 2 with one medial-lateral neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 2 with one medial neuron in each hemi-rhombomere. Ceri 2009-06-29T02:45:01Z TAO:0005206 rostral medial 2 medial interneuron zebrafish_anatomy ZFA:0005206 RoM2m ZFA:0005206 Hindbrain interneuron that is part of rhombomere 2 with one medial neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 3 with one lateral neuron in each hemi-rhombomere. Ceri 2009-06-29T02:46:19Z TAO:0005207 rostral medial 3 lateral interneuron zebrafish_anatomy ZFA:0005207 RoM3l ZFA:0005207 Hindbrain interneuron that is part of rhombomere 3 with one lateral neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 32 with two medial neurons in each hemi-rhombomere. Ceri 2009-06-29T02:52:04Z TAO:0005208 zebrafish_anatomy rostral medial 3 medial interneuron ZFA:0005208 RoM3m ZFA:0005208 Hindbrain interneuron that is part of rhombomere 32 with two medial neurons in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Is a CNS interneuron that is part of the hindbrain. Ceri 2009-07-08T10:21:27Z TAO:0005209 zebrafish_anatomy ZFA:0005209 hindbrain interneuron ZFA:0005209 Is a CNS interneuron that is part of the hindbrain. GOC:cvs ORCiD:0000-0002-2244-7917 CNS interneurons located in the midbrain. Ceri 2009-07-08T11:14:28Z TAO:0005210 zebrafish_anatomy ZFA:0005210 midbrain interneuron ZFA:0005210 CNS interneurons located in the midbrain. GOC:cvs ORCiD:0000-0002-2244-7917 Midbrain interneuron in the lateral midbrain. Ceri 2009-07-08T12:35:19Z TAO:0005211 mesencephalon lateral interneuron zebrafish_anatomy ZFA:0005211 MeL ZFA:0005211 Midbrain interneuron in the lateral midbrain. ZFIN:ZDB-PUB-961014-758 Midbrain interneuron located in the medial midbrain. Neuron bodies are part of a cluster. Ceri 2009-07-08T01:05:12Z TAO:0005212 mesencephalon medial interneuron zebrafish_anatomy ZFA:0005212 MeM ZFA:0005212 Midbrain interneuron located in the medial midbrain. Neuron bodies are part of a cluster. ZFIN:ZDB-PUB-961014-758 Midbrain interneuron at the rostral position in the lateral midbrain. Ceri 2009-07-08T01:26:45Z TAO:0005213 mesencephalon lateral rostral interneuron zebrafish_anatomy ZFA:0005213 MeLr ZFA:0005213 Midbrain interneuron at the rostral position in the lateral midbrain. ZFIN:ZDB-PUB-090217-9 Midbrain interneuron at the caudal position in the lateral midbrain. Ceri 2009-07-08T01:29:37Z TAO:0005214 mesencephalon lateral caudal interneuron zebrafish_anatomy ZFA:0005214 MeLc ZFA:0005214 Midbrain interneuron at the caudal position in the lateral midbrain. ZFIN:ZDB-PUB-090217-9 Midbrain interneuron at the medial position in the lateral midbrain. Ceri 2009-07-09T02:21:45Z TAO:0005215 mesencephalon lateral medial interneuron zebrafish_anatomy ZFA:0005215 MeLm ZFA:0005215 Midbrain interneuron at the medial position in the lateral midbrain. ZFIN:ZDB-PUB-090217-9 Midbrain interneuron located in the medial midbrain. The neuron body is positioned away from the MeM cluster. Ceri 2009-07-09T02:23:47Z TAO:0005216 mesencephalon medial 1 interneuron zebrafish_anatomy ZFA:0005216 MeM1 ZFA:0005216 Midbrain interneuron located in the medial midbrain. The neuron body is positioned away from the MeM cluster. ZFIN:ZDB-PUB-090217-9 Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere. Ceri 2009-07-09T02:33:31Z TAO:0005217 caudal ventral interneuron zebrafish_anatomy ZFA:0005217 CaV ZFA:0005217 Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Hindbrain interneuron that is part of rhombomere 7, with 1 dorsal neuron in each hemi-rhombomere. Ceri 2009-07-09T02:42:52Z TAO:0005218 caudal dorsal interneuron zebrafish_anatomy ZFA:0005218 CaD ZFA:0005218 Hindbrain interneuron that is part of rhombomere 7, with 1 dorsal neuron in each hemi-rhombomere. ZFIN:ZDB-PUB-961014-770 Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus. Ceri 2009-07-09T02:58:20Z TAO:0005219 CVC zebrafish_anatomy choroid vascular circuit ZFA:0005219 choroid plexus vascular circuit ZFA:0005219 Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus. ZFIN:ZDB-PUB-080908-11 A melanophore stripe that forms the immature pigment pattern. Ceri 2009-07-09T03:59:45Z TAO:0005220 zebrafish_anatomy ZFA:0005220 larval melanophore stripe ZFA:0005220 A melanophore stripe that forms the immature pigment pattern. ZFIN:ZDB-PUB-961014-576 A larval melanophore stripe that forms a band extending from the head to the tail along the dorsal apex of the myotomes. Ceri 2009-07-09T04:04:10Z TAO:0005221 zebrafish_anatomy ZFA:0005221 dorsal larval melanophore stripe ZFA:0005221 A larval melanophore stripe that forms a band extending from the head to the tail along the dorsal apex of the myotomes. ZFIN:ZDB-PUB-961014-576 A larval melanophore stripe that forms a band, of pigmentation extending from the bases of the eyes on each side of the midline to the top of the tail, that underlies the myotomes bilaterally, still is dorsal to the yolk. Ceri 2009-07-09T04:05:57Z TAO:0005222 zebrafish_anatomy ZFA:0005222 ventral larval melanophore stripe ZFA:0005222 A larval melanophore stripe that forms a band, of pigmentation extending from the bases of the eyes on each side of the midline to the top of the tail, that underlies the myotomes bilaterally, still is dorsal to the yolk. ZFIN:ZDB-PUB-961014-576 The larval melanophore stripe that is at the level of the horizontal myoseptum. Ceri 2009-07-09T04:29:18Z TAO:0005223 zebrafish_anatomy ZFA:0005223 lateral larval melanophore stripe ZFA:0005223 The larval melanophore stripe that is at the level of the horizontal myoseptum. ZFIN:ZDB-PUB-961014-576 The larval melanophore stripe that forms a band over the ventral surface of the yolk sac. Ceri 2009-07-09T04:30:34Z TAO:0005224 zebrafish_anatomy ZFA:0005224 yolk larval melanophore stripe ZFA:0005224 The larval melanophore stripe that forms a band over the ventral surface of the yolk sac. ZFIN:ZDB-PUB-961014-576 Lip that covers the lower portion of the mouth. Ceri 2009-07-09T04:42:58Z TAO:0002060 zebrafish_anatomy ZFA:0005225 lower lip ZFA:0005225 Lip that covers the lower portion of the mouth. GOC:cvs ORCiD:0000-0002-2244-7917 Lip that covers the upper portion of the mouth. Ceri 2009-07-09T04:43:52Z TAO:0001970 zebrafish_anatomy ZFA:0005226 upper lip ZFA:0005226 Lip that covers the upper portion of the mouth. GOC:cvs ORCiD:0000-0002-2244-7917 A group of about 20 cells deposited by the migrating lateral line primordium. A few hours after deposition these cells mature to form the neuromast. Ceri 2009-07-09T04:49:53Z TAO:0005227 zebrafish_anatomy immature neuromast proto neuromast proto-neuromast ZFA:0005227 protoneuromast ZFA:0005227 A group of about 20 cells deposited by the migrating lateral line primordium. A few hours after deposition these cells mature to form the neuromast. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070907-34 ZFIN:ZDB-PUB-080630-20 true ZFA:0005228 A portion of tissue that contains the choroid vasculature. It lies at the back of the eye. Ceri 2009-07-14T02:05:16Z TAO:0005229 choroid zebrafish_anatomy ZFA:0005229 optic choroid ZFA:0005229 A portion of tissue that contains the choroid vasculature. It lies at the back of the eye. GOC:cvs ISBN:1402070861 ORCiD:0000-0002-2244-7917 choroid ISBN:1402070861 A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally. Ceri 2009-07-17T01:12:14Z TAO:0005230 commissural bifurcating longitudinal zebrafish_anatomy ZFA:0005230 CoBL ZFA:0005230 A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-010807-17 Is a spinal interneuron that has an axon that splits into roughly equal size branches. Ceri 2009-07-17T01:22:50Z TAO:0005231 zebrafish_anatomy ZFA:0005231 bifurcate interneuron ZFA:0005231 Is a spinal interneuron that has an axon that splits into roughly equal size branches. GOC:cvs ORCiD:0000-0002-2244-7917 A multipolar interneuron with branching dendrites. The axon extend ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally. Ceri 2009-07-17T03:46:32Z TAO:0005232 multipolar commissural descending interneuron zebrafish_anatomy V0v larval VeLD ZFA:0005232 MCoD ZFA:0005232 A multipolar interneuron with branching dendrites. The axon extend ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-010807-17 V0v ZFIN:ZDB-PUB-230515-30 A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch. Ceri 2009-07-17T03:55:01Z TAO:0005233 circumferential descending interneuron commissural descending interneurons zebrafish_anatomy V2a interneuron ZFA:0005233 CiD ZFA:0005233 A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-010807-17 commissural descending interneurons ZFIN:ZDB-PUB-081114-2 A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch. These neurons are glycinergic. Ceri 2009-07-17T04:14:51Z TAO:0005234 commissural longitudinal ascending interneuron zebrafish_anatomy ZFA:0005234 CoLA ZFA:0005234 A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch. These neurons are glycinergic. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-010807-17 ZFIN:ZDB-PUB-230515-30 A unipolar spinal interneuron that forms dendritic trunk laterally with extensive dendritic branching. The axon extends ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally. Ceri 2009-07-17T04:26:07Z TAO:0005235 zebrafish_anatomy unipolar commissural descending interneuron ZFA:0005235 UCoD ZFA:0005235 A unipolar spinal interneuron that forms dendritic trunk laterally with extensive dendritic branching. The axon extends ventrally, lateral to the Mauthner axons before crossing the cord and descending ventrally. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-010807-17 A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. Ceri 2009-08-10T05:29:27Z CL:0000549 TAO:0005236 basophilic normoblast early erythroblast prorubricyte zebrafish_anatomy early normoblast ZFA:0005236 basophilic erythroblast ZFA:0005236 A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. ZFIN:ZDB-PUB-070221-1 basophilic normoblast ZFIN:ZDB-PUB-070221-1 early erythroblast ZFIN:ZDB-PUB-070221-1 prorubricyte ZFIN:ZDB-PUB-070221-1 early normoblast ZFIN:ZDB-PUB-070221-1 A nucleated precursor of an erythrocyte. Ceri 2009-08-10T05:13:41Z CL:0000765 TAO:0005237 normoblast zebrafish_anatomy ZFA:0005237 erythroblast ZFA:0005237 A nucleated precursor of an erythrocyte. ZFIN:ZDB-PUB-070221-1 A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation. Ceri 2009-08-10T05:41:07Z CL:0000648 TAO:0005238 kidney granular cell renin secreting cell zebrafish_anatomy ZFA:0005238 juxtaglomerular cell ZFA:0005238 A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation. GOC:cvs GOC:tfm ORCiD:0000-0002-2244-7917 PMID:11457727 Is a specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg. Ceri 2009-08-10T06:26:10Z CL:0007022 TAO:0005239 plug cell zebrafish_anatomy ZFA:0005239 micropylar cell ZFA:0005239 Is a specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg. ZFIN:ZDB-PUB-080630-14 Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. KA neurons are the dorsal population of CSF-cNs that originate from pMN. The apical extension of dorsal CSF-cNs is more extended along the border of the central canal than for ventral CSF-cNs. Dorsal CSF-cNs contact V0-v cells and project onto CoPA sensory interneuron and respond to lateral bending of the spinal cord. Ceri 2009-08-11T02:50:27Z CL:0005007 TAO:0005240 KA cell KA interneuron KA neuron Kolmer-Agduhr cell dorsal CSF-cN dorsal CSF-cNs zebrafish_anatomy ZFA:0005240 Kolmer-Agduhr neuron ZFA:0005240 Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. KA neurons are the dorsal population of CSF-cNs that originate from pMN. The apical extension of dorsal CSF-cNs is more extended along the border of the central canal than for ventral CSF-cNs. Dorsal CSF-cNs contact V0-v cells and project onto CoPA sensory interneuron and respond to lateral bending of the spinal cord. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-080825-21 ZFIN:ZDB-PUB-170409-2 KA interneuron ZFIN:ZDB-PUB-041115-5 KA neuron ZFIN:ZDB-PUB-980624-10 dorsal CSF-cN ZFIN:ZDB-PUB-170409-2 dorsal CSF-cNs ZFIN:ZDB-PUB-170409-2 A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely blue color, but takes on an acidophilic tint, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. Ceri 2009-08-11T03:38:32Z CL:0000550 TAO:0005241 intermediate erythroblast polychromatic erythroblast polychromatic normoblast rubricyte zebrafish_anatomy intermediate normoblast polychromatophilic normoblast ZFA:0005241 polychromatophilic erythroblast ZFA:0005241 A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely blue color, but takes on an acidophilic tint, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. ZFIN:ZDB-PUB-070221-1 A ciliated epithelial cell with many cilia. Ceri 2009-08-11T04:29:39Z ZFA:0009377 CL:0005012 TAO:0005242 multiciliated epithelial cell zebrafish_anatomy ZFA:0005242 multi-ciliated epithelial cell ZFA:0005242 A ciliated epithelial cell with many cilia. CL:Curator A ciliated epithelial cell with a single cilium. Ceri 2009-08-11T04:30:15Z ZFA:0009378 CL:0005013 TAO:0005243 single-ciliated epithelial cell zebrafish_anatomy ZFA:0005243 single ciliated epithelial cell ZFA:0005243 A ciliated epithelial cell with a single cilium. CL:curator A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells. Ceri 2009-08-11T04:41:03Z CL:0005014 TAO:0005244 auditory support cell zebrafish_anatomy ZFA:0005244 auditory epithelial support cell ZFA:0005244 A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells. CL:curator A non-terminally differentiated cell that originates from the neural crest and differentiates into a xanthophore. Ceri 2009-08-11T04:53:40Z ZFA:0005330 CL:0005002 TAO:0002148 zebrafish_anatomy ZFA:0005245 xanthoblast ZFA:0005245 A non-terminally differentiated cell that originates from the neural crest and differentiates into a xanthophore. CL:curator Is a fibroblast that differentiates from the de-differentiated cells of the blastema. Ceri 2009-08-12T01:43:26Z TAO:0005246 blastemal fibroblast blastemal fibroblasts zebrafish_anatomy ZFA:0005246 regeneration fibroblast ZFA:0005246 Is a fibroblast that differentiates from the de-differentiated cells of the blastema. GOC:cvs ORCiD:0000-0002-2244-7917 blastemal fibroblasts Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord. Ceri 2009-08-21T04:22:15Z TAO:0005247 circumferential ascending interneuron zebrafish_anatomy V1 interneuron ZFA:0005247 CiA ZFA:0005247 Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-040625-12 ZFIN:ZDB-PUB-060418-1 Vein segment that connects the PCeVs in the choroid plexus. Ceri 2009-11-02T04:07:52Z TAO:0005248 TCB zebrafish_anatomy ZFA:0005248 trans-choroid plexus branch ZFA:0005248 Vein segment that connects the PCeVs in the choroid plexus. ZFIN:ZDB-PUB-080908-10 TCB ZFIN:ZDB-PUB-080908-10 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism. Ceri 2009-11-10T02:31:54Z TAO:0001079 TAO:0005249 zebrafish_anatomy ZFA:0005249 vasculature ZFA:0005249 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism. GOC:cvs ORCiD:0000-0002-2244-7917 Microvessel of the blood circulation system lined with vascular endothelial cells. Ceri 2009-11-11T01:15:32Z TAO:0005250 zebrafish_anatomy ZFA:0005250 capillary ZFA:0005250 Microvessel of the blood circulation system lined with vascular endothelial cells. GOC:cvs ORCiD:0000-0002-2244-7917 A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels. Ceri 2009-11-11T01:16:24Z TAO:0005251 zebrafish_anatomy vasculature ZFA:0005251 microcirculatory vessel ZFA:0005251 A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels. GOC:cvs ORCiD:0000-0002-2244-7917 Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells. Ceri 2009-11-11T01:27:39Z TAO:0005252 zebrafish_anatomy ZFA:0005252 lymphatic capillary ZFA:0005252 Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells. GOC:cvs ORCiD:0000-0002-2244-7917 Simple squamous epithelium that lines the capsule of the renal glomerulus. Ceri 2009-11-11T01:39:19Z TAO:0005253 parietal epithelial layer zebrafish_anatomy ZFA:0005253 renal glomerular capsule epithelium ZFA:0005253 Simple squamous epithelium that lines the capsule of the renal glomerulus. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of tissue that encapsulates the glomerulus of the renal corpuscle. Ceri 2009-11-11T01:45:02Z TAO:0005254 Bowman's capsule zebrafish_anatomy ZFA:0005254 renal glomerular capsule ZFA:0005254 Portion of tissue that encapsulates the glomerulus of the renal corpuscle. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Multi-tissue structure part of the blood vasculature. Feeds into capillaries. Arterioles carry blood away from the heart. Ceri 2009-11-11T01:46:54Z TAO:0002138 zebrafish_anatomy ZFA:0005255 arteriole ZFA:0005255 Multi-tissue structure part of the blood vasculature. Feeds into capillaries. Arterioles carry blood away from the heart. GOC:cvs ORCiD:0000-0002-2244-7917 A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. Ceri 2010-01-07T12:26:13Z TAO:0005256 zebrafish_anatomy intestinal crypt ZFA:0005256 intervillus pockets ZFA:0005256 A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. ZFIN:ZDB-PUB-050209-3 intestinal crypt ZFIN:ZDB-PUB-090217-11 The vascular endothelium that lines blood vasculature. Ceri 2009-11-11T02:16:38Z TAO:0005257 zebrafish_anatomy ZFA:0005257 blood vessel endothelium ZFA:0005257 The vascular endothelium that lines blood vasculature. GOC:cvs ORCiD:0000-0002-2244-7917 The vascular endothelium that lines the lymph vessels. Ceri 2009-11-11T02:18:09Z TAO:0005258 zebrafish_anatomy ZFA:0005258 lymph vessel endothelium ZFA:0005258 The vascular endothelium that lines the lymph vessels. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel endothelium that has tight junctions between the endothelial cells. Ceri 2009-11-11T02:19:54Z TAO:0005259 zebrafish_anatomy ZFA:0005259 continuous blood vessel endothelium ZFA:0005259 Blood vessel endothelium that has tight junctions between the endothelial cells. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel endothelium that has pores that allow passage small molecules and proteins. Ceri 2009-11-11T02:21:55Z TAO:0005260 zebrafish_anatomy ZFA:0005260 fenestrated blood vessel endothelium ZFA:0005260 Blood vessel endothelium that has pores that allow passage small molecules and proteins. GOC:cvs ORCiD:0000-0002-2244-7917 Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous. Ceri 2009-11-11T02:51:27Z TAO:0005261 zebrafish_anatomy ZFA:0005261 sinusoidal blood vessel endothelium ZFA:0005261 Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous. GOC:cvs ORCiD:0000-0002-2244-7917 Caudal procurrent ray that is dorsally located on the caudal fin skeleton. There are 6 dorsal procurrent rays in the caudal fin. Ceri 2009-12-02T02:06:39Z TAO:0001829 dorsal procurrent caudal-fin ray zebrafish_anatomy ZFA:0005262 caudal fin dorsal procurrent ray ZFA:0005262 Caudal procurrent ray that is dorsally located on the caudal fin skeleton. There are 6 dorsal procurrent rays in the caudal fin. TAO:curator ZFIN:ZDB-PUB-031103-13 Caudal procurrent ray that is ventrally located on the caudal fin skeleton. There are 5 ventral procurrent rays in the caudal fin. Ceri 2009-12-02T02:13:14Z TAO:0001830 ventral procurrent ray zebrafish_anatomy ZFA:0005263 caudal fin ventral procurrent ray ZFA:0005263 Caudal procurrent ray that is ventrally located on the caudal fin skeleton. There are 5 ventral procurrent rays in the caudal fin. TAO:curator ZFIN:ZDB-PUB-031103-13 Ligament that connects the maxilla with the lower jaw. Ceri 2009-12-02T02:28:51Z TAO:0001828 articular-maxillary ligament ligamentum primordiale maxillo-mandibular ligament zebrafish_anatomy ZFA:0005264 primordial ligament ZFA:0005264 Ligament that connects the maxilla with the lower jaw. TAO:curator articular-maxillary ligament doi:10.1111/j.1096-3642.1964.tb00493.x Ligament that connects the premaxilla to the maxilla. Ceri 2009-12-02T02:52:49Z TAO:0001827 zebrafish_anatomy ZFA:0005265 premaxillary-maxillary ligament ZFA:0005265 Ligament that connects the premaxilla to the maxilla. TAO:curator Ceri 2009-12-02T04:19:10Z zebrafish_anatomy DLF ZFA:0005266 The DLF in zebrafish is not homologous to the Mammalian DLF. Mammalian DLF is in brain, the fish DLF is in spinal cord. dorsal longitudinal fasciculus ZFA:0005266 Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle. Ceri 2009-12-03T05:15:15Z TAO:0005267 zebrafish_anatomy ZFA:0005267 erector muscle ZFA:0005267 Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle. GOC:cvs ORCiD:0000-0002-2244-7917 A muscle that brings a body part closer to the sagittal plane of the body. Ceri 2009-12-04T12:59:52Z TAO:0002136 zebrafish_anatomy ZFA:0005268 adductor muscle ZFA:0005268 A muscle that brings a body part closer to the sagittal plane of the body. GOC:cvs ORCiD:0000-0002-2244-7917 A muscle that moves a body part away from the sagittal plane of the body. Ceri 2009-12-04T01:05:41Z TAO:0002135 zebrafish_anatomy ZFA:0005269 abductor muscle ZFA:0005269 A muscle that moves a body part away from the sagittal plane of the body. GOC:cvs ORCiD:0000-0002-2244-7917 A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle. Ceri 2009-12-04T01:15:51Z TAO:0005270 zebrafish_anatomy ZFA:0005270 depressor muscle ZFA:0005270 A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle. GOC:cvs ORCiD:0000-0002-2244-7917 A muscle that decrease the angle of a joint. Ceri 2009-12-04T01:20:04Z TAO:0005271 zebrafish_anatomy ZFA:0005271 flexor muscle ZFA:0005271 A muscle that decrease the angle of a joint. GOC:cvs ORCiD:0000-0002-2244-7917 Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes. Ceri 2009-12-09T11:35:20Z TAO:0005272 juvenile gonad juvenile ovary zebrafish_anatomy ZFA:0005272 immature gonad ZFA:0005272 Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes. ZFIN:ZDB-PUB-070305-2 juvenile ovary ZFIN:ZDB-PUB-070305-2 A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold. Ceri 2010-01-07T01:36:48Z TAO:0005273 zebrafish_anatomy intestinal lamina muscularis mucosae ZFA:0005273 intestinal mucosal muscle ZFA:0005273 A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold. ZFIN:ZDB-PUB-090217-11 intestinal lamina muscularis mucosae http://www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs. Ceri 2010-01-07T02:57:18Z TAO:0005274 zebrafish_anatomy ZFA:0005274 smooth muscle ZFA:0005274 A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs. GOC:cvs ORCiD:0000-0002-2244-7917 Fin muscle that is located on the anterior edge of the fin. Arrector muscles change the angle of the leading edge of the fin during swimming. Ceri 2010-01-07T04:50:10Z TAO:0002147 zebrafish_anatomy ZFA:0005275 arrector muscle ZFA:0005275 Fin muscle that is located on the anterior edge of the fin. Arrector muscles change the angle of the leading edge of the fin during swimming. GOC:cvs ORCiD:0000-0002-2244-7917 Ceri 2010-01-07T04:51:38Z TAO:0005276 zebrafish_anatomy ZFA:0005276 inclinator muscle ZFA:0005276 Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons. Ceri 2010-01-07T05:06:51Z TAO:0005277 zebrafish_anatomy ZFA:0005277 skeletal muscle ZFA:0005277 Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons. GOC:cvs ORCiD:0000-0002-2244-7917 Smooth muscle of the enteric muscle system in which the cells are aligned parallel to the lumen of the gut. Ceri 2010-01-07T05:48:52Z zebrafish_anatomy ZFA:0005278 enteric longitudinal muscle ZFA:0005278 Smooth muscle of the enteric muscle system in which the cells are aligned parallel to the lumen of the gut. GOC:cvs ORCiD:0000-0002-2244-7917 Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut. Ceri 2010-01-07T05:51:25Z TAO:0005279 zebrafish_anatomy ZFA:0005279 enteric circular muscle ZFA:0005279 Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut. GOC:cvs ORCiD:0000-0002-2244-7917 Muscle composed of cardiac muscle cells that is part of the heart. Ceri 2010-01-07T06:04:03Z TAO:0005280 zebrafish_anatomy ZFA:0005280 cardiac muscle ZFA:0005280 Muscle composed of cardiac muscle cells that is part of the heart. GOC:cvs ORCiD:0000-0002-2244-7917 The part of the nephron that filters blood. Ceri 2010-01-19T01:11:46Z TAO:0005281 Malpighian corpuscle zebrafish_anatomy ZFA:0005281 renal corpuscle ZFA:0005281 The part of the nephron that filters blood. GOC:cvs ORCiD:0000-0002-2244-7917 Functional unit of the kidney that filters waste. Ceri 2010-01-19T02:47:46Z TAO:0002153 zebrafish_anatomy ZFA:0005282 nephron ZFA:0005282 Functional unit of the kidney that filters waste. GOC:cvs ORCiD:0000-0002-2244-7917 Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule. Ceri 2010-01-19T02:51:01Z TAO:0005283 Bowman's space inter-glomerular space urinary space zebrafish_anatomy ZFA:0005283 renal capsular space ZFA:0005283 Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule. GOC:cvs ORCiD:0000-0002-2244-7917 Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level. Ceri 2010-01-19T03:00:45Z TAO:0005284 zebrafish_anatomy ZFA:0005284 glomerular capillary ZFA:0005284 Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-000824-1 Membrane between the mesonephric podocytes and the renal glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space. Ceri 2010-01-19T03:26:30Z TAO:0005285 glomerular filtration membrane zebrafish_anatomy ZFA:0005285 glomerular basement membrane ZFA:0005285 Membrane between the mesonephric podocytes and the renal glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-000824-1 Middle layer of the glomerular basement membrane. Ceri 2010-01-19T03:52:52Z TAO:0005286 zebrafish_anatomy ZFA:0005286 lamina densa ZFA:0005286 Middle layer of the glomerular basement membrane. GOC:cvs ORCiD:0000-0002-2244-7917 Layer of the glomerular basement membrane adjacent to the glomerular capillary. Ceri 2010-01-19T03:56:00Z TAO:0005287 zebrafish_anatomy ZFA:0005287 lamina rara interna ZFA:0005287 Layer of the glomerular basement membrane adjacent to the glomerular capillary. GOC:cvs ORCiD:0000-0002-2244-7917 Layer of the glomerular basement membrane adjacent to the podocytes and capsular space. Ceri 2010-01-19T03:56:32Z TAO:0005288 zebrafish_anatomy ZFA:0005288 lamina rara externa ZFA:0005288 Layer of the glomerular basement membrane adjacent to the podocytes and capsular space. GOC:cvs ORCiD:0000-0002-2244-7917 Tubes in the kidney that collect and transport urine. Ceri 2010-01-19T04:36:59Z TAO:0005289 zebrafish_anatomy ZFA:0005289 renal duct ZFA:0005289 Tubes in the kidney that collect and transport urine. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-071029-9 Renal tubule that connects to the renal corpuscle. Ceri 2010-01-20T12:39:12Z TAO:0005290 zebrafish_anatomy ZFA:0005290 proximal convoluted tubule ZFA:0005290 Renal tubule that connects to the renal corpuscle. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of the renal tubule which is just posterior to the proximal convoluted tubule. Ceri 2010-01-20T12:41:23Z TAO:0005291 zebrafish_anatomy ZFA:0005291 proximal straight tubule ZFA:0005291 Portion of the renal tubule which is just posterior to the proximal convoluted tubule. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of the renal tubule which is just posterior to the distal early tubule. Ceri 2010-01-20T12:43:22Z TAO:0005292 zebrafish_anatomy ZFA:0005292 distal late tubule ZFA:0005292 Portion of the renal tubule which is just posterior to the distal early tubule. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of the renal tubule which is just posterior to the proximal straight tubule. Ceri 2010-01-20T12:44:30Z TAO:0005293 distal early tubules zebrafish_anatomy ZFA:0005293 distal early tubule ZFA:0005293 Portion of the renal tubule which is just posterior to the proximal straight tubule. GOC:cvs ORCiD:0000-0002-2244-7917 distal early tubules Renal duct that collects the output from renal tubules. Ceri 2010-01-20T01:17:47Z TAO:0005294 zebrafish_anatomy ZFA:0005294 collecting duct ZFA:0005294 Renal duct that collects the output from renal tubules. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel that runs along the rostral-caudal axis of the fish. Ceri 2010-01-20T02:24:10Z TAO:0005295 zebrafish_anatomy ZFA:0005295 axial blood vessel ZFA:0005295 Blood vessel that runs along the rostral-caudal axis of the fish. GOC:cvs ORCiD:0000-0002-2244-7917 Lymph vessel that runs along the rostral-caudal axis of the fish. Ceri 2010-01-20T02:24:34Z zebrafish_anatomy ZFA:0005296 axial lymph vessel ZFA:0005296 Lymph vessel that runs along the rostral-caudal axis of the fish. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel part of cranial vasculature. Ceri 2010-01-20T02:25:23Z TAO:0005297 zebrafish_anatomy ZFA:0005297 cranial blood vessel ZFA:0005297 Blood vessel part of cranial vasculature. GOC:cvs ORCiD:0000-0002-2244-7917 Lymph vessel that is located in the head. Ceri 2010-01-20T02:25:47Z TAO:0005298 zebrafish_anatomy ZFA:0005298 cranial lymph vessel ZFA:0005298 Lymph vessel that is located in the head. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel part of fin. Ceri 2010-01-20T02:52:39Z TAO:0005299 zebrafish_anatomy ZFA:0005299 fin blood vessel ZFA:0005299 Blood vessel part of fin. GOC:cvs ORCiD:0000-0002-2244-7917 Lymph vessel part of fin. Ceri 2010-01-20T02:53:08Z TAO:0005300 zebrafish_anatomy ZFA:0005300 fin lymph vessel ZFA:0005300 Lymph vessel part of fin. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel part of pectoral fin. Ceri 2010-01-20T02:54:07Z TAO:0005301 zebrafish_anatomy ZFA:0005301 pectoral fin blood vessel ZFA:0005301 Blood vessel part of pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 Lymph vessel part of pectoral fin. Ceri 2010-01-20T02:54:43Z TAO:0005302 zebrafish_anatomy ZFA:0005302 pectoral fin lymph vessel ZFA:0005302 Lymph vessel part of pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 Lymph vessel that is located in the caudal fin. Ceri 2010-01-20T02:55:44Z TAO:0005303 zebrafish_anatomy ZFA:0005303 caudal fin lymph vessel ZFA:0005303 Lymph vessel that is located in the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel located within the caudal fin. Ceri 2010-01-20T02:55:49Z TAO:0005304 zebrafish_anatomy ZFA:0005304 caudal fin blood vessel ZFA:0005304 Blood vessel located within the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the kidney. Ceri 2010-01-20T03:02:06Z TAO:0005305 zebrafish_anatomy ZFA:0005305 kidney vasculature ZFA:0005305 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the kidney. GOC:cvs ORCiD:0000-0002-2244-7917 Blood vessel part of kidney. Ceri 2010-01-20T03:02:27Z TAO:0005306 zebrafish_anatomy ZFA:0005306 kidney blood vessel ZFA:0005306 Blood vessel part of kidney. GOC:cvs ORCiD:0000-0002-2244-7917 Arteriole that carries blood into the glomerular capillaries. Ceri 2010-01-20T03:02:56Z TAO:0002139 zebrafish_anatomy ZFA:0005307 afferent glomerular arteriole ZFA:0005307 Arteriole that carries blood into the glomerular capillaries. GOC:cvs ORCiD:0000-0002-2244-7917 Arteriole that carries blood out of the glomerular capillaries. Ceri 2010-01-20T03:05:49Z TAO:0002140 zebrafish_anatomy ZFA:0005308 efferent glomerular arteriole ZFA:0005308 Arteriole that carries blood out of the glomerular capillaries. GOC:cvs ORCiD:0000-0002-2244-7917 Capillary that is part of the pronephric glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level. Ceri 2010-01-29T11:29:44Z TAO:0005309 zebrafish_anatomy ZFA:0005309 pronephric glomerular capillary ZFA:0005309 Capillary that is part of the pronephric glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-000824-1 Portion of tissue that encapsulates the glomerulus of the pronephros. Ceri 2010-01-29T11:39:01Z TAO:0005310 Bowman's capsule zebrafish_anatomy ZFA:0005310 pronephric glomerular capsule ZFA:0005310 Portion of tissue that encapsulates the glomerulus of the pronephros. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Simple squamous epithelium that lines the capsule of the pronephric glomerulus. Ceri 2010-01-29T11:40:01Z TAO:0005311 pronephric parietal epithelial layer zebrafish_anatomy ZFA:0005311 pronephric glomerular capsule epithelium ZFA:0005311 Simple squamous epithelium that lines the capsule of the pronephric glomerulus. GOC:cvs ORCiD:0000-0002-2244-7917 Space between the pronephric glomerulus and the pronephric glomerular capsule. Renal filtrate collects here then passes into the pronephric tubule. Ceri 2010-01-29T11:41:05Z TAO:0005312 Bowman's space inter-glomerular space urinary space zebrafish_anatomy ZFA:0005312 pronephric capsular space ZFA:0005312 Space between the pronephric glomerulus and the pronephric glomerular capsule. Renal filtrate collects here then passes into the pronephric tubule. GOC:cvs ORCiD:0000-0002-2244-7917 Membrane between the pronephric podocytes and the pronephric glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space. Ceri 2010-01-29T11:59:03Z TAO:0005313 pronephric glomerular filtration membrane zebrafish_anatomy ZFA:0005313 pronephric glomerular basement membrane ZFA:0005313 Membrane between the pronephric podocytes and the pronephric glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-000824-1 Any of the tubular multi-tissue structures through which blood circulates in the body. Ceri 2010-01-29T02:17:51Z TAO:0002137 zebrafish_anatomy ZFA:0005314 blood vessel ZFA:0005314 Any of the tubular multi-tissue structures through which blood circulates in the body. vHOG:curator Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart. Ceri 2010-01-29T03:29:15Z TAO:0005315 zebrafish_anatomy ZFA:0005315 venule ZFA:0005315 Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart. GOC:cvs ORCiD:0000-0002-2244-7917 Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold. Ceri 2010-02-10T02:37:39Z TAO:0005316 zebrafish_anatomy fin membrane pectoral fin bud ZFA:0005316 fin fold pectoral fin bud ZFA:0005316 Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold. ZFIN:ZDB-PUB-001101-7 ZFIN:ZDB-PUB-990210-18 The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds. Ceri 2010-02-10T03:27:29Z TAO:0005317 pectoral fin membrane zebrafish_anatomy ZFA:0005317 pectoral fin fold ZFA:0005317 The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-990210-18 Ceri 2010-02-10T03:44:48Z TAO:0005318 zebrafish_anatomy ZFA:0005318 Does not exist in teleosts. Menke, A.L., Spitsbergen, J.M., Wolterbeek, A.P., and Woutersen, R.A. (2011) Normal Anatomy and Histology of the Adult Zebrafish. Toxicol. Pathol. 39(5): 759-775. lymph node true ZFA:0005318 Lymph vessel that is located between the somites. Ceri 2010-02-10T05:28:00Z TAO:0005319 islv zebrafish_anatomy ZFA:0005319 intersegmental lymph vessel ZFA:0005319 Lymph vessel that is located between the somites. GOC:cvs ORCiD:0000-0002-2244-7917 Ceri 2010-02-10T05:29:42Z TAO:0005320 dllv zebrafish_anatomy ZFA:0005320 dorsal longitudinal lymphatic vessel ZFA:0005320 Smooth muscle that is part of the blood vessel wall. Ceri 2010-02-10T05:39:30Z TAO:0005321 zebrafish_anatomy ZFA:0005321 vascular smooth muscle ZFA:0005321 Smooth muscle that is part of the blood vessel wall. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060216-3 A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts. Ceri 2010-02-10T06:32:34Z ZFA:0009373 CL:0005009 TAO:0005322 zebrafish_anatomy ZFA:0005322 renal principal cell ZFA:0005322 A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts. GOC:cvs ORCiD:0000-0002-2244-7917 Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment. Ceri 2010-02-22T01:18:18Z CL:0005006 TAO:0005323 zebrafish_anatomy ZFA:0005323 ionocyte ZFA:0005323 Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment. ZFIN:ZDB-PUB-070625-18 ZFIN:ZDB-PUB-090310-19 Ionocyte located in the gills. Ceri 2010-02-22T01:22:16Z TAO:0005324 zebrafish_anatomy ZFA:0005324 gill ionocyte ZFA:0005324 Ionocyte located in the gills. GOC:cvs ORCiD:0000-0002-2244-7917 Ionocyte located in the integument during embryonic and larval stages. Ceri 2010-02-22T02:13:14Z TAO:0005325 skin ionocyte zebrafish_anatomy extrabranchial ionocyte ZFA:0005325 integument ionocyte ZFA:0005325 Ionocyte located in the integument during embryonic and larval stages. GOC:cvs ORCiD:0000-0002-2244-7917 Integument ionocyte rich in Na,K-ATPase. Ceri 2010-02-22T02:29:17Z TAO:0005326 zebrafish_anatomy NaK-MRC NaR cell ZFA:0005326 NaK ionocyte ZFA:0005326 Integument ionocyte rich in Na,K-ATPase. GOC:cvs ORCiD:0000-0002-2244-7917 Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase. Ceri 2010-02-22T02:32:20Z TAO:0005327 zebrafish_anatomy HR cell VH-MRC ZFA:0005327 vH ionocyte ZFA:0005327 Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase. GOC:cvs ORCiD:0000-0002-2244-7917 A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore. Ceri 2010-02-22T03:51:51Z CL:0005001 TAO:0005328 zebrafish_anatomy ZFA:0005328 iridoblast ZFA:0005328 A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore. CL:curator A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore. Ceri 2010-02-22T03:51:51Z CL:0005003 TAO:0005329 zebrafish_anatomy ZFA:0005329 leucoblast ZFA:0005329 A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore. CL:curator true ZFA:0005330 A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore. Ceri 2010-02-22T03:51:51Z CL:0005004 TAO:0005331 zebrafish_anatomy ZFA:0005331 pigment erythroblast ZFA:0005331 A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore. CL:curator A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore. Ceri 2010-02-22T03:51:51Z CL:0005005 TAO:0005332 zebrafish_anatomy ZFA:0005332 cyanoblast ZFA:0005332 A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore. CL:curator A multi-tissue mediosagittal cylinder-shaped structure, clearly isolated from the jaw and adhered by differentiated plicae to the lateral walls. It is composed of a muscle surrounded by a squamous epithelium. Ceri 2010-03-18T03:04:28Z TAO:0005333 zebrafish_anatomy ZFA:0005333 tongue ZFA:0005333 A multi-tissue mediosagittal cylinder-shaped structure, clearly isolated from the jaw and adhered by differentiated plicae to the lateral walls. It is composed of a muscle surrounded by a squamous epithelium. ZFIN:ZDB-PUB-060921-12 ZFIN:ZDB-PUB-091204-24 The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds. Ceri 2010-03-18T03:12:14Z TAO:0005334 zebrafish_anatomy ZFA:0005334 lip epithelium ZFA:0005334 The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060921-12 Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder. Ceri 2010-03-18T03:59:33Z TAO:0005335 zebrafish_anatomy ZFA:0005335 swim bladder bud ZFA:0005335 Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder. ZFIN:ZDB-PUB-090511-18 ZFIN:ZDB-PUB-100202-11 Portion of the gut endoderm that will eventually develop into the swim bladder. Ceri 2010-03-18T04:20:42Z TAO:0005336 zebrafish_anatomy swim bladder anlage ZFA:0005336 presumptive swim bladder ZFA:0005336 Portion of the gut endoderm that will eventually develop into the swim bladder. ZFIN:ZDB-PUB-090511-18 swim bladder anlage ZFIN:ZDB-PUB-100202-11 Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder. Ceri 2010-03-18T04:28:20Z TAO:0002145 zebrafish_anatomy ZFA:0005337 anterior swim bladder bud ZFA:0005337 Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder. ZFIN:ZDB-PUB-090511-18 Posterior protrusion of the third ventricle. Ceri 2010-03-18T05:40:53Z TAO:0005338 posterior recess of diencephalic ventricle recessus posterior zebrafish_anatomy ZFA:0005338 posterior recess ZFA:0005338 Posterior protrusion of the third ventricle. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 posterior recess of diencephalic ventricle ZFIN:ZDB-PUB-091221-27 recessus posterior ZFIN:ZDB-PUB-961014-1280 Is a diencephalic nucleus located in the caudal periventricular hypothalamus surrounding the lateral recess of the third ventricle. Ceri 2010-03-18T05:52:56Z TAO:0005339 zebrafish_anatomy ZFA:0005339 nucleus of the lateral recess ZFA:0005339 Is a diencephalic nucleus located in the caudal periventricular hypothalamus surrounding the lateral recess of the third ventricle. ZFIN:ZDB-PUB-091221-27 A diencephalic nucleus that is part of caudal periventricular hypothalmus surrounding the posterior recess of the third ventricle. Ceri 2010-03-18T05:59:24Z TAO:0005340 zebrafish_anatomy ZFA:0005340 nucleus of the posterior recess ZFA:0005340 A diencephalic nucleus that is part of caudal periventricular hypothalmus surrounding the posterior recess of the third ventricle. ZFIN:ZDB-PUB-091221-27 CNS white matter tract, major catecholaminergic tract that originates in the diencephalon, passes the locus coeruleus and projects through the hindbrain into the spinal cord. Dopaminergic neurons of the posterior tuberculum and lateral hypothalamus provide the predominant contribution to descending mlct projections. Ceri 2010-03-18T06:07:36Z TAO:0005341 medial longitudinal CA tract mlct zebrafish_anatomy ZFA:0005341 medial longitudinal catecholaminergic tract ZFA:0005341 CNS white matter tract, major catecholaminergic tract that originates in the diencephalon, passes the locus coeruleus and projects through the hindbrain into the spinal cord. Dopaminergic neurons of the posterior tuberculum and lateral hypothalamus provide the predominant contribution to descending mlct projections. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-091221-28 medial longitudinal CA tract ZFIN:ZDB-PUB-091221-28 CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract. Ceri 2010-03-18T06:11:28Z TAO:0002144 zebrafish_anatomy ZFA:0005342 anterior catecholaminergic tract ZFA:0005342 CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-091221-28 CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus. Ceri 2010-03-18T06:13:25Z TAO:0005343 zebrafish_anatomy ZFA:0005343 endohypothalamic tract ZFA:0005343 CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-091221-28 CNS white matter, axonal tract between the preoptic region and ventral diencephalon. Ceri 2010-03-18T06:14:28Z TAO:0005344 zebrafish_anatomy ZFA:0005344 preopticohypothalamic tract ZFA:0005344 CNS white matter, axonal tract between the preoptic region and ventral diencephalon. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-091221-28 Connective tissue in which fat is stored. All adipose tissue in the zebrafish is white adipose tissue and is comprised of adipocytes, stroma, macrophages and vasculature. Mature adipocytes express adipokines, such as adipsin, adiponectin, and leptin so white adipose tissue is considered an endocrine organ. The connective tissue is loose and infiltrated by a vascular network. Ceri 2010-03-19T10:04:38Z TAO:0002134 white adipose tissue zebrafish_anatomy ZFA:0005345 adipose tissue ZFA:0005345 Connective tissue in which fat is stored. All adipose tissue in the zebrafish is white adipose tissue and is comprised of adipocytes, stroma, macrophages and vasculature. Mature adipocytes express adipokines, such as adipsin, adiponectin, and leptin so white adipose tissue is considered an endocrine organ. The connective tissue is loose and infiltrated by a vascular network. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101011-51 Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla. Ceri 2010-03-19T03:17:51Z TAO:0005346 zebrafish_anatomy ZFA:0005346 extrapancreatic duct ZFA:0005346 Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla. ZFIN:ZDB-PUB-050623-3 Vertebra that is posteriorly adjacent to vertebra 4. Ceri 2010-04-21T04:13:30Z TAO:0001732 zebrafish_anatomy ZFA:0005347 vertebra 5 ZFA:0005347 Vertebra that is posteriorly adjacent to vertebra 4. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 5. Ceri 2010-04-21T04:31:28Z TAO:0001980 zebrafish_anatomy ZFA:0005348 vertebra 6 ZFA:0005348 Vertebra that is posteriorly adjacent to vertebra 5. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 6. Ceri 2010-04-21T04:31:47Z TAO:0001981 zebrafish_anatomy ZFA:0005349 vertebra 7 ZFA:0005349 Vertebra that is posteriorly adjacent to vertebra 6. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 7. Ceri 2010-04-21T04:32:12Z TAO:0001982 zebrafish_anatomy ZFA:0005350 vertebra 8 ZFA:0005350 Vertebra that is posteriorly adjacent to vertebra 7. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 8. Ceri 2010-04-21T04:32:37Z TAO:0002149 zebrafish_anatomy ZFA:0005351 vertebra 9 ZFA:0005351 Vertebra that is posteriorly adjacent to vertebra 8. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib. Ceri 2010-04-21T04:33:09Z TAO:0002152 zebrafish_anatomy ZFA:0005352 vertebra 12 ZFA:0005352 Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib. ZFIN:ZDB-PUB-020807-1 Vertebra that is posteriorly adjacent to vertebra 9. Ceri 2010-04-21T04:33:57Z TAO:0002150 zebrafish_anatomy ZFA:0005353 vertebra 10 ZFA:0005353 Vertebra that is posteriorly adjacent to vertebra 9. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 10. Ceri 2010-04-21T04:34:16Z TAO:0002151 zebrafish_anatomy ZFA:0005354 vertebra 11 ZFA:0005354 Vertebra that is posteriorly adjacent to vertebra 10. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 First lepidotrichium of dorsal fin. Ceri 2010-04-22T05:26:13Z TAO:0001754 dorsal fin ray 1 zebrafish_anatomy ZFA:0005355 dorsal fin lepidotrichium 1 ZFA:0005355 First lepidotrichium of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Second lepidotrichium of dorsal fin. Ceri 2010-04-22T05:28:14Z TAO:0001755 dorsal fin ray 2 zebrafish_anatomy ZFA:0005356 dorsal fin lepidotrichium 2 ZFA:0005356 Second lepidotrichium of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Third lepidotrichium of dorsal fin. Ceri 2010-04-22T05:28:28Z TAO:0001756 dorsal fin ray 3 zebrafish_anatomy ZFA:0005357 dorsal fin lepidotrichium 3 ZFA:0005357 Third lepidotrichium of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fourth lepidotrichium of dorsal fin. Ceri 2010-04-22T05:29:09Z TAO:0001757 dorsal fin ray 4 zebrafish_anatomy ZFA:0005358 dorsal fin lepidotrichium 4 ZFA:0005358 Fourth lepidotrichium of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fifth lepidotrichium of dorsal fin. Ceri 2010-04-22T05:29:18Z TAO:0001758 dorsal fin ray 5 zebrafish_anatomy ZFA:0005359 dorsal fin lepidotrichium 5 ZFA:0005359 Fifth lepidotrichium of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Sixth lepidotrichium of dorsal fin. Ceri 2010-04-22T05:29:33Z TAO:0001759 dorsal fin ray 6 zebrafish_anatomy ZFA:0005360 dorsal fin lepidotrichium 6 ZFA:0005360 Sixth lepidotrichium of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Seventh lepidotrichium of dorsal fin. Ceri 2010-04-22T05:29:52Z TAO:0001760 dorsal fin ray 7 zebrafish_anatomy ZFA:0005361 dorsal fin lepidotrichium 7 ZFA:0005361 Seventh lepidotrichium of dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 First proximal radial of the dorsal fin. Ceri 2010-04-22T05:39:57Z TAO:0001818 zebrafish_anatomy ZFA:0005362 dorsal fin proximal radial 1 ZFA:0005362 First proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Second proximal radial of the dorsal fin. Ceri 2010-04-22T05:40:13Z TAO:0001819 zebrafish_anatomy ZFA:0005363 dorsal fin proximal radial 2 ZFA:0005363 Second proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Dorsal fin pterygiophore that is the rostralmost pterygiophore of the dorsal fin. Ceri 2010-04-22T05:47:57Z TAO:0002094 dorsal fin radial 1 zebrafish_anatomy ZFA:0005364 dorsal fin pterygiophore 1 ZFA:0005364 Dorsal fin pterygiophore that is the rostralmost pterygiophore of the dorsal fin. TAO:curator Dorsal fin pterygiophore that is caudal to pterygiophore 1 of the dorsal fin. Ceri 2010-04-22T05:48:12Z TAO:0005365 dorsal fin radial 2 zebrafish_anatomy ZFA:0005365 dorsal fin pterygiophore 2 ZFA:0005365 Dorsal fin pterygiophore that is caudal to pterygiophore 1 of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Dorsal fin pterygiophore that is caudal to pterygiophore 2 of the dorsal fin. Ceri 2010-04-22T05:48:36Z TAO:0005366 dorsal fin radial 3 zebrafish_anatomy ZFA:0005366 dorsal fin pterygiophore 3 ZFA:0005366 Dorsal fin pterygiophore that is caudal to pterygiophore 2 of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 Dorsal fin pterygiophore that is caudal to pterygiophore 3 of the dorsal fin. One of the two first radials to ossify. Ceri 2010-04-22T05:48:48Z TAO:0005367 dorsal fin radial 4 zebrafish_anatomy ZFA:0005367 dorsal fin pterygiophore 4 ZFA:0005367 Dorsal fin pterygiophore that is caudal to pterygiophore 3 of the dorsal fin. One of the two first radials to ossify. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 Dorsal fin pterygiophore that is caudal to pterygiophore 4 of the dorsal fin. One of the two first radials to ossify. Ceri 2010-04-22T05:49:00Z TAO:0005368 dorsal fin radial 5 zebrafish_anatomy ZFA:0005368 dorsal fin pterygiophore 5 ZFA:0005368 Dorsal fin pterygiophore that is caudal to pterygiophore 4 of the dorsal fin. One of the two first radials to ossify. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 Dorsal fin pterygiophore that is caudal to pterygiophore 5 of the dorsal fin. Ceri 2010-04-22T05:49:26Z TAO:0005369 dorsal fin radial 6 zebrafish_anatomy ZFA:0005369 dorsal fin pterygiophore 6 ZFA:0005369 Dorsal fin pterygiophore that is caudal to pterygiophore 5 of the dorsal fin. ZFIN:ZDB-PUB-031103-13 Dorsal fin pterygiophore that is caudal to pterygiophore 6 of the dorsal fin. Ceri 2010-04-22T05:49:39Z TAO:0005370 dorsal fin radial 7 zebrafish_anatomy ZFA:0005370 dorsal fin pterygiophore 7 ZFA:0005370 Dorsal fin pterygiophore that is caudal to pterygiophore 6 of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 Dorsal fin pterygiophore that is caudal to pterygiophore 7 of the dorsal fin. The most caudal pterygiophore of the dorsal fin. Ceri 2010-04-22T05:53:09Z TAO:0005371 dorsal fin radial 8 zebrafish_anatomy ZFA:0005371 dorsal fin pterygiophore 8 ZFA:0005371 Dorsal fin pterygiophore that is caudal to pterygiophore 7 of the dorsal fin. The most caudal pterygiophore of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-031103-13 First distal radial of the dorsal fin. Ceri 2010-04-22T05:54:49Z TAO:0005372 zebrafish_anatomy ZFA:0005372 dorsal fin distal radial 1 ZFA:0005372 First distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Second distal radial of the dorsal fin. Ceri 2010-04-22T05:55:31Z TAO:0005373 zebrafish_anatomy ZFA:0005373 dorsal fin distal radial 2 ZFA:0005373 Second distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Third distal radial of the dorsal fin. Ceri 2010-04-22T05:57:11Z TAO:0005374 zebrafish_anatomy ZFA:0005374 dorsal fin distal radial 3 ZFA:0005374 Third distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fourth distal radial of the dorsal fin. Ceri 2010-04-22T05:57:21Z TAO:0005375 zebrafish_anatomy ZFA:0005375 dorsal fin distal radial 4 ZFA:0005375 Fourth distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fifth distal radial of the dorsal fin. Ceri 2010-04-22T05:57:32Z TAO:0005376 zebrafish_anatomy ZFA:0005376 dorsal fin distal radial 5 ZFA:0005376 Fifth distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Sixth distal radial of the dorsal fin. Ceri 2010-04-22T05:57:48Z TAO:0005377 zebrafish_anatomy ZFA:0005377 dorsal fin distal radial 6 ZFA:0005377 Sixth distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Seventh distal radial of the dorsal fin. Ceri 2010-04-22T05:58:04Z TAO:0005378 zebrafish_anatomy ZFA:0005378 dorsal fin distal radial 7 ZFA:0005378 Seventh distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Eighth distal radial of the dorsal fin. Ceri 2010-04-22T05:58:19Z TAO:0005379 zebrafish_anatomy ZFA:0005379 dorsal fin distal radial 8 ZFA:0005379 Eighth distal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Third proximal radial of the dorsal fin. Ceri 2010-04-22T05:58:39Z TAO:0005380 zebrafish_anatomy ZFA:0005380 dorsal fin proximal radial 3 ZFA:0005380 Third proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fourth proximal radial of the dorsal fin. Ceri 2010-04-22T05:59:08Z TAO:0005381 zebrafish_anatomy ZFA:0005381 dorsal fin proximal radial 4 ZFA:0005381 Fourth proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fifth proximal radial of the dorsal fin. Ceri 2010-04-22T05:59:20Z TAO:0005382 zebrafish_anatomy ZFA:0005382 dorsal fin proximal radial 5 ZFA:0005382 Fifth proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Sixth proximal radial of the dorsal fin. Ceri 2010-04-22T05:59:30Z TAO:0005383 zebrafish_anatomy ZFA:0005383 dorsal fin proximal radial 6 ZFA:0005383 Sixth proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Seventh proximal radial of the dorsal fin. Ceri 2010-04-22T05:59:42Z TAO:0005384 zebrafish_anatomy ZFA:0005384 dorsal fin proximal radial 7 ZFA:0005384 Seventh proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Eighth proximal radial of the dorsal fin. Ceri 2010-04-22T05:59:54Z TAO:0005385 zebrafish_anatomy ZFA:0005385 dorsal fin proximal radial 8 ZFA:0005385 Eighth proximal radial of the dorsal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves. Ceri 2010-04-23T11:01:27Z TAO:0001736 foramina zebrafish_anatomy ZFA:0005386 foramen ZFA:0005386 Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves. TAO:curator foramina Foramen in the occipital region of neurocranium to allow passage of spinal cord. Ceri 2010-04-23T11:02:49Z TAO:0002045 zebrafish_anatomy ZFA:0005387 foramen magnum ZFA:0005387 Foramen in the occipital region of neurocranium to allow passage of spinal cord. TAO:curator Anatomical space that is a concavity, shallow depression, or groove on a bone. Ceri 2010-04-23T11:04:59Z TAO:0001743 zebrafish_anatomy ZFA:0005388 fossa ZFA:0005388 Anatomical space that is a concavity, shallow depression, or groove on a bone. TAO:curator Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head. Ceri 2010-04-23T11:06:34Z TAO:0002057 zebrafish_anatomy ZFA:0005389 gill opening ZFA:0005389 Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head. TAO:curator Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage. Ceri 2010-04-23T11:17:01Z TAO:0001856 zebrafish_anatomy ZFA:0005390 gill ray ZFA:0005390 Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage. TAO:curator Lateral line system on head and pectoral girdle. Ceri 2010-04-23T01:42:45Z TAO:0001873 zebrafish_anatomy ZFA:0005391 head sensory canal system ZFA:0005391 Lateral line system on head and pectoral girdle. TAO:WD Sensory canal associated with the infraorbital bones. Located in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired. The canal has 3 pores. The first opens dorsally below the nasal sac, the second opens laterally posterior to the anterior maxilary barbel, the third pore is present where infraorbital 1 meets infraorbital 2. Ceri 2010-04-23T01:44:27Z TAO:0001811 zebrafish_anatomy ZFA:0005392 infraorbital sensory canal ZFA:0005392 Sensory canal associated with the infraorbital bones. Located in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired. The canal has 3 pores. The first opens dorsally below the nasal sac, the second opens laterally posterior to the anterior maxilary barbel, the third pore is present where infraorbital 1 meets infraorbital 2. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired. Ceri 2010-04-23T01:45:04Z TAO:0001629 zebrafish_anatomy ZFA:0005393 otic sensory canal ZFA:0005393 Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired. TAO:curator Sensory canal that forms dorsal to the horizontal semicircular canal of the ear. The anterior end of the canal may span or remain posterior to the pterotic-sphenotic junction. The posterior end of the postotic canal meets the temporal and supratemporal canals. The canal lies between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired and when mature is fully enclosed in bone. Ceri 2010-04-23T01:45:48Z TAO:0001619 postotic sensory canal zebrafish_anatomy ZFA:0005394 post-otic sensory canal ZFA:0005394 Sensory canal that forms dorsal to the horizontal semicircular canal of the ear. The anterior end of the canal may span or remain posterior to the pterotic-sphenotic junction. The posterior end of the postotic canal meets the temporal and supratemporal canals. The canal lies between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired and when mature is fully enclosed in bone. TAO:curator ZFIN:ZDB-PUB-961014-192 postotic sensory canal ZFIN:ZDB-PUB-961014-192 Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones. Ceri 2010-04-23T01:59:39Z TAO:0001812 zebrafish_anatomy ZFA:0005395 preoperculo-mandibular sensory canal ZFA:0005395 Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones. TAO:curator Sensory canal contained in the nasal and frontal bones. It contains 4 or 5 neuromast. The first neuromast is positioned in the tubular nasal bone and the other neuromasts are located in the frontal bone. The canal is anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired. Ceri 2010-04-23T02:00:48Z TAO:0001810 zebrafish_anatomy ZFA:0005396 supraorbital sensory canal ZFA:0005396 Sensory canal contained in the nasal and frontal bones. It contains 4 or 5 neuromast. The first neuromast is positioned in the tubular nasal bone and the other neuromasts are located in the frontal bone. The canal is anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired. TAO:curator ZFIN:ZDB-PUB-031103-11 Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2. Ceri 2010-04-23T02:54:34Z TAO:0002010 zebrafish_anatomy ZFA:0005397 hyoideomandibular nerve ZFA:0005397 Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2. TAO:curator Actinotrichium that is part of the anal fin skeleton. Ceri 2010-04-23T04:54:17Z TAO:0000375 anal fin actinotricia zebrafish_anatomy ZFA:0005398 anal fin actinotrichium ZFA:0005398 Actinotrichium that is part of the anal fin skeleton. TAO:curator anal fin actinotricia First lepidotrichium of anal fin. Ceri 2010-04-23T04:57:18Z TAO:0001769 zebrafish_anatomy ZFA:0005399 anal fin lepidotrichium 1 ZFA:0005399 First lepidotrichium of anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Second lepidotrichium of anal fin. Ceri 2010-04-23T04:57:31Z TAO:0001770 zebrafish_anatomy ZFA:0005400 anal fin lepidotrichium 2 ZFA:0005400 Second lepidotrichium of anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Third epidotrichium of anal fin. Ceri 2010-04-23T04:57:43Z TAO:0001771 zebrafish_anatomy ZFA:0005401 anal fin lepidotrichium 3 ZFA:0005401 Third epidotrichium of anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fourth lepidotrichium of anal fin. Ceri 2010-04-23T04:57:55Z TAO:0001772 zebrafish_anatomy ZFA:0005402 anal fin lepidotrichium 4 ZFA:0005402 Fourth lepidotrichium of anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fifth lepidotrichium of anal fin. Ceri 2010-04-23T04:58:07Z TAO:0001773 zebrafish_anatomy ZFA:0005403 anal fin lepidotrichium 5 ZFA:0005403 Fifth lepidotrichium of anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Sixth lepidotrichium of anal fin. Ceri 2010-04-23T04:58:19Z TAO:0001774 zebrafish_anatomy ZFA:0005404 anal fin lepidotrichium 6 ZFA:0005404 Sixth lepidotrichium of anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Seventh lepidotrichium of anal fin. Ceri 2010-04-23T04:58:32Z TAO:0001775 zebrafish_anatomy ZFA:0005405 anal fin lepidotrichium 7 ZFA:0005405 Seventh lepidotrichium of anal fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature. Ceri 2010-04-23T05:11:17Z TAO:0001927 zebrafish_anatomy ZFA:0005406 Dbxref for ZFIN changed to match actual database accession number. Old Dbxref ZDB-ANAT-100614-560 correct Dbxref ZDB-ANAT-100614-60. anterior myodome ZFA:0005406 Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature. TAO:curator Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired. Ceri 2010-04-23T05:12:00Z TAO:0001937 zebrafish_anatomy ZFA:0005407 anterior nasal barbel ZFA:0005407 Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired. TAO:curator Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired. Maxillary barbel has considerable range of motion, with contraction and protraction motivated by maxillary blood sinus. The maxillary barbel integument has taste buds. Capable of regeneration. Ceri 2010-04-23T05:13:52Z TAO:0001938 ZMB zebrafish_anatomy ZFA:0005408 maxillary barbel ZFA:0005408 Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired. Maxillary barbel has considerable range of motion, with contraction and protraction motivated by maxillary blood sinus. The maxillary barbel integument has taste buds. Capable of regeneration. GOC:ymb ORCiD:0000-0002-9900-7880 TAO:WD ZFIN:ZDB-PUB-140816-6 ZMB ZFIN:ZDB-PUB-140813-6 The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle. ceri 2010-05-17T10:43:19Z TAO:0005409 zebrafish_anatomy ZFA:0005409 pars superior ear ZFA:0005409 The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 The ventral portion of the ear. It contains the saccule and the lagena which are the primary auditory organs. ceri 2010-05-17T10:51:56Z TAO:0005410 zebrafish_anatomy ZFA:0005410 pars inferior ear ZFA:0005410 The ventral portion of the ear. It contains the saccule and the lagena which are the primary auditory organs. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Duct that forms when the nonampullary ends of the posterior and anterior semicircular canals merge. The common crus descends connecting the semicircular canals to the horizontal canal. ceri 2010-05-17T11:03:13Z TAO:0005411 zebrafish_anatomy ZFA:0005411 common crus ZFA:0005411 Duct that forms when the nonampullary ends of the posterior and anterior semicircular canals merge. The common crus descends connecting the semicircular canals to the horizontal canal. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-7 ZFIN:ZDB-PUB-020403-4 Duct that crosses the midline connecting the sacculi. ceri 2010-05-17T03:08:14Z TAO:0005412 zebrafish_anatomy ZFA:0005412 transverse canal ZFA:0005412 Duct that crosses the midline connecting the sacculi. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Portion of organism substance that is an extracellular fluid that has a low potassium concentration. ceri 2010-05-17T03:11:11Z TAO:0005413 zebrafish_anatomy ZFA:0005413 perilymph ZFA:0005413 Portion of organism substance that is an extracellular fluid that has a low potassium concentration. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010912-7 The portion of organism substance that is an extracellular fluid that has a high potassium and sodium concentration. It bathes the hair cells and is thought to be generated by the semicircular canal epithelium. ceri 2010-05-17T03:11:30Z TAO:0005414 zebrafish_anatomy ZFA:0005414 endolymph ZFA:0005414 The portion of organism substance that is an extracellular fluid that has a high potassium and sodium concentration. It bathes the hair cells and is thought to be generated by the semicircular canal epithelium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090731-6 Foramen in the inner ear. ceri 2010-05-18T11:11:52Z TAO:0005415 zebrafish_anatomy ZFA:0005415 inner ear foramen ZFA:0005415 Foramen in the inner ear. GOC:cvs ORCiD:0000-0002-2244-7917 Inner ear foramen that connects the lagena to the caudal half of the saccule. ceri 2010-05-19T07:13:29Z TAO:0005416 zebrafish_anatomy ZFA:0005416 sacculoagenar foramen ZFA:0005416 Inner ear foramen that connects the lagena to the caudal half of the saccule. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-020403-4 Inner ear foramen that connects the rostral saccula to the utricle. ceri 2010-05-19T07:15:09Z zebrafish_anatomy ZFA:0005417 utriculosaccular foramen ZFA:0005417 Inner ear foramen that connects the rostral saccula to the utricle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-020403-4 Opening in the neurocranium to allow communication between the swim bladder and the inner ear. Ceri 2010-05-25T05:28:33Z TAO:0002066 auditory fenestrae zebrafish_anatomy ZFA:0005418 auditory fenestra ZFA:0005418 Opening in the neurocranium to allow communication between the swim bladder and the inner ear. TAO:curator auditory fenestrae Foramen through which cranial nerve VIII (auditory) exits. Ceri 2010-05-25T05:29:43Z TAO:0001742 zebrafish_anatomy ZFA:0005419 auditory foramen ZFA:0005419 Foramen through which cranial nerve VIII (auditory) exits. TAO:curator Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired. Ceri 2010-05-25T05:31:28Z TAO:0001608 zebrafish_anatomy ZFA:0005420 autopalatine-lateral ethmoid joint ZFA:0005420 Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired. TAO:curator Joint that articulates the autopalatine cartilage or bone and maxilla. Ceri 2010-05-25T05:32:51Z TAO:0001942 zebrafish_anatomy ZFA:0005421 autopalatine-maxillary joint ZFA:0005421 Joint that articulates the autopalatine cartilage or bone and maxilla. TAO:curator Joint that articulates autopalatine and vomer bones. Autopalatine vomer joint is paired. Ceri 2010-05-25T05:34:03Z TAO:0001784 zebrafish_anatomy ZFA:0005422 autopalatine-vomer joint ZFA:0005422 Joint that articulates autopalatine and vomer bones. Autopalatine vomer joint is paired. TAO:curator Joint that articulates the basioccipital and exoccipital. Basioccipital exoccipital joint is paired. Ceri 2010-05-25T05:55:17Z TAO:0002038 zebrafish_anatomy ZFA:0005423 basioccipital-exoccipital joint ZFA:0005423 Joint that articulates the basioccipital and exoccipital. Basioccipital exoccipital joint is paired. TAO:curator Actinotrichium that is part of the caudal fin skeleton. Ceri 2010-05-25T06:07:35Z TAO:0000437 caudal fin actinotrichia zebrafish_anatomy ZFA:0005424 caudal fin actinotrichium ZFA:0005424 Actinotrichium that is part of the caudal fin skeleton. TAO:curator caudal fin actinotrichia A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer. Ceri 2010-05-26T10:36:36Z TAO:0005425 zebrafish_anatomy ZFA:0005425 serous membrane ZFA:0005425 A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer. http://en.wikipedia.org/wiki/Serous_membrane Foramen that is located in the coracoid. Ceri 2010-05-26T01:35:35Z TAO:0001737 zebrafish_anatomy ZFA:0005426 coracoid foramen ZFA:0005426 Foramen that is located in the coracoid. TAO:curator Foramen located on the dentary for passage of the mandibular nerve. Ceri 2010-05-26T01:36:29Z TAO:0002012 zebrafish_anatomy ZFA:0005427 dentary foramen ZFA:0005427 Foramen located on the dentary for passage of the mandibular nerve. TAO:curator Foramen in the orbital region of the neurocranium for the passage of the optic nerve (cranial nerve II). Ceri 2010-05-26T02:34:08Z TAO:0002025 optic nerve (II) foramen zebrafish_anatomy ZFA:0005428 optic foramen ZFA:0005428 Foramen in the orbital region of the neurocranium for the passage of the optic nerve (cranial nerve II). TAO:curator optic nerve (II) foramen ZFIN:ZDB-PUB-961014-192 Foramen for the passage of the olfactory nerve or cranial nerve 1. Ceri 2010-05-26T02:35:17Z TAO:0001804 zebrafish_anatomy ZFA:0005429 olfactory nerve foramen ZFA:0005429 Foramen for the passage of the olfactory nerve or cranial nerve 1. TAO:curator Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal). Ceri 2010-05-26T02:36:02Z TAO:0002031 zebrafish_anatomy ZFA:0005430 orbital foramen ZFA:0005430 Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal). TAO:curator Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone. Ceri 2010-05-26T02:37:13Z TAO:0001735 zebrafish_anatomy ZFA:0005431 scapular foramen ZFA:0005431 Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone. TAO:curator Foramen through which the superficial ophthalmic nerve passes. Ceri 2010-05-26T02:38:20Z TAO:0001748 zebrafish_anatomy ZFA:0005432 superficial ophthalmic nerve foramen ZFA:0005432 Foramen through which the superficial ophthalmic nerve passes. TAO:curator Barbel that originates on the chin. Ceri 2010-05-26T05:43:41Z TAO:0002024 zebrafish_anatomy ZFA:0005433 mental barbel ZFA:0005433 Barbel that originates on the chin. TAO:curator Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth. Ceri 2010-05-26T06:11:37Z TAO:0001973 zebrafish_anatomy ZFA:0005434 tooth cusp ZFA:0005434 Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth. TAO:curator Skeletal element which is a slender, horny, flexible, unsegmented fibril which provide structural support to fin folds or fins. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine. Ceri 2010-06-08T04:31:42Z TAO:0000089 actinotrichia zebrafish_anatomy ZFA:0005435 actinotrichium ZFA:0005435 Skeletal element which is a slender, horny, flexible, unsegmented fibril which provide structural support to fin folds or fins. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine. GOC:cvs ORCiD:0000-0002-2244-7917 actinotrichia Nerve that is part of the pectoral fin. Ceri 2010-06-20T10:18:37Z zebrafish_anatomy ZFA:0005436 pectoral fin nerve ZFA:0005436 Nerve that is part of the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 Motor nerve that is located in the pectoral fin. Ceri 2010-06-20T10:19:45Z zebrafish_anatomy ZFA:0005437 pectoral fin motor nerve ZFA:0005437 Motor nerve that is located in the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070726-9 Sensory nerve that innervates the pectoral fin. Ceri 2010-06-20T10:21:38Z zebrafish_anatomy ZFA:0005438 pectoral fin sensory nerve ZFA:0005438 Sensory nerve that innervates the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070726-9 Pectoral fin motor nerve that enters the fin from the dorsal side of the fin rostral of all other motor nerves and innervates the dorsal side of the pectoral fin. Ceri 2010-06-20T10:22:40Z zebrafish_anatomy ZFA:0005439 pectoral fin motor nerve 1 ZFA:0005439 Pectoral fin motor nerve that enters the fin from the dorsal side of the fin rostral of all other motor nerves and innervates the dorsal side of the pectoral fin. ZFIN:ZDB-PUB-070726-9 Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and rostral of all other motor nerves and innervates the dorsal side of the pectoral fin. Ceri 2010-06-20T10:27:40Z zebrafish_anatomy ZFA:0005440 pectoral fin motor nerve 2 ZFA:0005440 Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and rostral of all other motor nerves and innervates the dorsal side of the pectoral fin. ZFIN:ZDB-PUB-070726-9 Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and 2 and rostral of nerve 4 and innervates the dorsal side of the pectoral fin. Ceri 2010-06-20T10:28:55Z zebrafish_anatomy ZFA:0005441 pectoral fin motor nerve 3 ZFA:0005441 Pectoral fin motor nerve that enters the fin from the dorsal side of the fin caudal of nerve 1 and 2 and rostral of nerve 4 and innervates the dorsal side of the pectoral fin. ZFIN:ZDB-PUB-070726-9 Fossa of opercle that articulates with hyomandibular condyle for opercle. Ceri 2010-06-24T02:57:49Z TAO:0001928 zebrafish_anatomy ZFA:0005442 articular fossa of opercle ZFA:0005442 Fossa of opercle that articulates with hyomandibular condyle for opercle. TAO:curator Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromasts. Ceri 2010-06-24T05:31:47Z TAO:0001612 zebrafish_anatomy ZFA:0005443 sensory canal ZFA:0005443 Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromasts. TAO:curator Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to the caudal fin. The trunk sensory canal is bilaterally paired. Ceri 2010-06-24T05:39:49Z TAO:0001617 zebrafish_anatomy ZFA:0005444 trunk sensory canal ZFA:0005444 Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to the caudal fin. The trunk sensory canal is bilaterally paired. TAO:curator Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired. Ceri 2010-06-25T10:45:28Z TAO:0001630 zebrafish_anatomy ZFA:0005445 supratemporal sensory canal ZFA:0005445 Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired. TAO:curator Foramen in a bone that is part of a sensory canal. Ceri 2010-06-28T10:26:50Z zebrafish_anatomy ZFA:0005446 neuromast foramen ZFA:0005446 Foramen in a bone that is part of a sensory canal. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so. Ceri 2010-06-25T10:46:49Z TAO:0001933 zebrafish_anatomy ZFA:0005447 sensory canal tubule ZFA:0005447 Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so. TAO:curator Sensory canal associated with the preopercle bone. It lies in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired. Ceri 2010-06-25T10:58:48Z TAO:0001813 zebrafish_anatomy ZFA:0005448 preopercular sensory canal ZFA:0005448 Sensory canal associated with the preopercle bone. It lies in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired. GOC:cvs ORCiD:0000-0002-2244-7917 An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space. Ceri 2010-06-28T11:08:35Z TAO:0001791 zebrafish_anatomy ZFA:0005449 pore ZFA:0005449 An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space. TAO:curator Pectoral fin motor nerve that enters the fin from the ventral side of the fin and innervates the ventral side of the pectoral fin. Ceri 2010-06-28T01:47:43Z zebrafish_anatomy ZFA:0005450 pectoral fin motor nerve 4 ZFA:0005450 Pectoral fin motor nerve that enters the fin from the ventral side of the fin and innervates the ventral side of the pectoral fin. ZFIN:ZDB-PUB-070726-9 Sensory canal associated with the angular and dentary bones. Located anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and does not meet at the mandibular symphysis. The mandibular lateral line canal has 3 neuromast located between the canal pores. Two neuromast are located in the portion of the can in the dentary bone. The third neuromast is located in the anguloarticular bone. The rostral end of the canal has a terminal pore adjacent to the mandibular symphysis. There are three more pores, two, at the posterior of the dentary and the anterior of the anguloarticular share a common epithelial pore. Ceri 2010-06-25T12:27:58Z TAO:0001814 zebrafish_anatomy ZFA:0005451 mandibular sensory canal ZFA:0005451 Sensory canal associated with the angular and dentary bones. Located anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and does not meet at the mandibular symphysis. The mandibular lateral line canal has 3 neuromast located between the canal pores. Two neuromast are located in the portion of the can in the dentary bone. The third neuromast is located in the anguloarticular bone. The rostral end of the canal has a terminal pore adjacent to the mandibular symphysis. There are three more pores, two, at the posterior of the dentary and the anterior of the anguloarticular share a common epithelial pore. TAO:curator ZFIN:ZDB-PUB-031103-11 Tract which originates from several clusters of cell bodies in the rostral midbrain, the anterior tegmentum and the nucleus of the posterior commissure. The neurons that are part of the nucleus of the posterior commissure have axons which course ventrally toward the anterior tegmentum, while the ventral tegmental clusters of neurons have axons which course dorsally along the posterior commissure and cross the dorsal midline to the contralateral side they then turn posteriorly and extend to the posterior region of the tegmentum and eventually into the hindbrain via the tract of the postoptic commissure. . Ceri 2010-07-21T01:49:43Z tract of the posterior commissure zebrafish_anatomy TPC ZFA:0005452 tract of the caudal commissure ZFA:0005452 Tract which originates from several clusters of cell bodies in the rostral midbrain, the anterior tegmentum and the nucleus of the posterior commissure. The neurons that are part of the nucleus of the posterior commissure have axons which course ventrally toward the anterior tegmentum, while the ventral tegmental clusters of neurons have axons which course dorsally along the posterior commissure and cross the dorsal midline to the contralateral side they then turn posteriorly and extend to the posterior region of the tegmentum and eventually into the hindbrain via the tract of the postoptic commissure. . GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1268 ZFIN:ZDB-PUB-961014-167 tract of the posterior commissure ZFIN:ZDB-PUB-961014-421 TPC ZFIN:ZDB-PUB-961014-1268 Opening in the prootic. The basicapsular fenestra is paired. Ceri 2010-06-25T05:40:06Z basicapsular fenestrae zebrafish_anatomy ZFA:0005453 basicapsular fenestra ZFA:0005453 Opening in the prootic. The basicapsular fenestra is paired. GOC:cvs ORCiD:0000-0002-2244-7917 basicapsular fenestrae Fossa where the anteromedial rim is formed by the prootic, the remainder of the fossa is formed by the exoccipital and pterotic. Ceri 2010-06-25T05:47:28Z TAO:0001974 zebrafish_anatomy ZFA:0005454 subtemporal fossa ZFA:0005454 Fossa where the anteromedial rim is formed by the prootic, the remainder of the fossa is formed by the exoccipital and pterotic. ZFIN:ZDB-PUB-961014-192 Foramen formed between the anterolateral extension of the prootic that contacts the pterosphenoid the prootic and the pterosphenoid. Ceri 2010-06-25T05:53:27Z anterior trigemino-facialis foramen of Howes trigeminal notch of Harrington zebrafish_anatomy ZFA:0005455 prootic foramen ZFA:0005455 Foramen formed between the anterolateral extension of the prootic that contacts the pterosphenoid the prootic and the pterosphenoid. ZFIN:ZDB-PUB-961014-192 Perilymphatic compartment of the zebrafish ear. Chamber positioned ventral of the medulla, the anterior end surrounds the posterior portion of the transverse canal. Ceri 2010-07-21T02:01:50Z zebrafish_anatomy ZFA:0005456 sinus impar ZFA:0005456 Perilymphatic compartment of the zebrafish ear. Chamber positioned ventral of the medulla, the anterior end surrounds the posterior portion of the transverse canal. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-7 Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired. Ceri 2010-07-21T02:02:25Z TAO:0001847 zebrafish_anatomy ZFA:0005457 dorsal hypohyal-urohyal joint ZFA:0005457 Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired. TAO:curator Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired. Ceri 2010-07-21T02:02:53Z TAO:0001845 zebrafish_anatomy ZFA:0005458 dorsal hypohyal-ventral hypohyal joint ZFA:0005458 Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired. TAO:curator Space that contains perilymph. Ceri 2010-07-21T02:03:28Z zebrafish_anatomy ZFA:0005459 perilymphatic space ZFA:0005459 Space that contains perilymph. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Bilaterally paired perilymphatic chambers posterior to the sinus impar. These connect to the anterior end of the otic duct. Ceri 2010-07-21T02:06:23Z zebrafish_anatomy ZFA:0005460 atrium of sinus impar ZFA:0005460 Bilaterally paired perilymphatic chambers posterior to the sinus impar. These connect to the anterior end of the otic duct. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-7 Duct that contains perilymph. Ceri 2010-07-21T02:15:02Z zebrafish_anatomy ZFA:0005461 perilymphatic duct ZFA:0005461 Duct that contains perilymph. GOC:cvs ORCiD:0000-0002-2244-7917 Pair of perilymphatic ducts that extend from the dorsal ends of the atria of the sinus impar, pass on either side of the medulla and merge and extend dorsally toward the surface of the head. Ceri 2010-07-21T02:15:52Z zebrafish_anatomy ZFA:0005462 otic duct ZFA:0005462 Pair of perilymphatic ducts that extend from the dorsal ends of the atria of the sinus impar, pass on either side of the medulla and merge and extend dorsally toward the surface of the head. ZFIN:ZDB-PUB-010912-7 Ectoderm of the oral region. Ceri 2010-07-21T03:22:11Z zebrafish_anatomy ZFA:0005463 oral ectoderm ZFA:0005463 Ectoderm of the oral region. GOC:cvs ORCiD:0000-0002-2244-7917 Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired. Ceri 2010-07-21T03:56:09Z TAO:0001749 zebrafish_anatomy ZFA:0005464 dentary-anguloarticular joint ZFA:0005464 Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired. TAO:curator Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired. Ceri 2010-07-21T03:56:35Z TAO:0001850 zebrafish_anatomy ZFA:0005465 ceratohyal-branchiostegal ray joint ZFA:0005465 Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired. TAO:curator Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired. Ceri 2010-07-21T03:56:50Z TAO:0001844 zebrafish_anatomy ZFA:0005466 ceratohyal-ventral hypohyal joint ZFA:0005466 Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired. TAO:curator Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired. Ceri 2010-07-21T03:57:08Z TAO:0001843 zebrafish_anatomy ZFA:0005467 ceratohyal-dorsal hypohyal joint ZFA:0005467 Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired. TAO:curator Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired. Ceri 2010-07-21T03:57:53Z TAO:0001711 zebrafish_anatomy ZFA:0005468 frontal-pterotic joint ZFA:0005468 Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired. TAO:curator Joint that articulates the hyomandibula bone and metapterygoid bone. Ceri 2010-07-21T03:58:13Z TAO:0001979 zebrafish_anatomy ZFA:0005469 hyomandibula-metapterygoid joint ZFA:0005469 Joint that articulates the hyomandibula bone and metapterygoid bone. TAO:curator Joint between the right and left coracoid bones of the pectoral girdle. Ceri 2010-07-21T03:58:45Z TAO:0002040 zebrafish_anatomy ZFA:0005470 inter-coracoid joint ZFA:0005470 Joint between the right and left coracoid bones of the pectoral girdle. TAO:curator Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired. Ceri 2010-07-21T03:59:58Z TAO:0001939 zebrafish_anatomy ZFA:0005471 inter-basipterygium joint ZFA:0005471 Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired. TAO:curator Joint between the left and right frontal bone. Ceri 2010-07-21T04:01:00Z TAO:0001922 interfrontal joint interfrontal suture zebrafish_anatomy metopic suture ZFA:0005472 inter-frontal joint ZFA:0005472 Joint between the left and right frontal bone. TAO:WD interfrontal suture ZFIN:ZDB-PUB-060323-12 metopic suture ZFIN:ZDB-PUB-060323-12 Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired. Ceri 2010-07-21T04:01:23Z TAO:0001841 zebrafish_anatomy ZFA:0005473 interhyal-epihyal joint ZFA:0005473 Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired. TAO:curator Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired. Ceri 2010-07-21T04:01:35Z TAO:0001863 zebrafish_anatomy ZFA:0005474 inter-hypobranchial 3 joint ZFA:0005474 Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired. TAO:curator Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired. Ceri 2010-07-21T04:01:59Z TAO:0001950 zebrafish_anatomy ZFA:0005475 inter-premaxillary joint ZFA:0005475 Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired. TAO:curator Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired. Ceri 2010-07-21T04:02:17Z TAO:0001846 zebrafish_anatomy ZFA:0005476 inter-ventral hypohyal joint ZFA:0005476 Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired. TAO:curator Joint that articulates the lateral ethmoid and frontal. Lateral ethmoid-frontal joint is paired. Ceri 2010-07-21T04:02:40Z TAO:0002032 zebrafish_anatomy ZFA:0005477 lateral ethmoid-frontal joint ZFA:0005477 Joint that articulates the lateral ethmoid and frontal. Lateral ethmoid-frontal joint is paired. TAO:curator Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired. Ceri 2010-07-21T04:03:01Z TAO:0001710 zebrafish_anatomy ZFA:0005478 opercle-interopercle joint ZFA:0005478 Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired. TAO:curator Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired. Ceri 2010-07-21T04:03:17Z TAO:0001941 zebrafish_anatomy ZFA:0005479 orbitosphenoid-lateral ethmoid joint ZFA:0005479 Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired. TAO:curator Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired. Ceri 2010-07-21T04:03:30Z TAO:0001794 zebrafish_anatomy ZFA:0005480 orbitosphenoid-prootic joint ZFA:0005480 Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired. TAO:curator Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired. Ceri 2010-07-21T04:41:27Z TAO:0002034 zebrafish_anatomy ZFA:0005481 prootic-exoccipital joint ZFA:0005481 Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired. TAO:curator Joint that articulates the prootic and pterosphenoid. Prootic-pterosphenoid joint is paired. The parasphenoid borders the prootic medially in a syndesmosis. Ceri 2010-07-21T04:41:53Z TAO:0002033 zebrafish_anatomy ZFA:0005482 prootic-pterosphenoid joint ZFA:0005482 Joint that articulates the prootic and pterosphenoid. Prootic-pterosphenoid joint is paired. The parasphenoid borders the prootic medially in a syndesmosis. TAO:curator ZFIN:ZDB-PUB-961014-192 Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired. Ceri 2010-07-21T04:42:11Z TAO:0001831 zebrafish_anatomy ZFA:0005483 pterosphenoid-orbitosphenoid joint ZFA:0005483 Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired. TAO:curator Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired. Ceri 2010-07-21T04:44:59Z TAO:0001802 zebrafish_anatomy jaw joint ZFA:0005484 quadrate-anguloarticular joint ZFA:0005484 Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired. TAO:curator Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired. Ceri 2010-07-21T04:45:14Z TAO:0001801 zebrafish_anatomy ZFA:0005485 quadrate-hyomandibula joint ZFA:0005485 Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired. TAO:curator Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired. Ceri 2010-07-21T04:45:27Z TAO:0001803 zebrafish_anatomy ZFA:0005486 quadrate-metapterygoid joint ZFA:0005486 Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired. TAO:curator Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired. Ceri 2010-07-21T04:46:00Z TAO:0001848 zebrafish_anatomy ZFA:0005487 ventral hypohyal-urohyal joint ZFA:0005487 Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired. TAO:curator Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired. Ceri 2010-07-21T04:55:35Z TAO:0001851 dentary symphysis inter-mandibular joint zebrafish_anatomy ZFA:0005488 mandibular symphysis ZFA:0005488 Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired. TAO:curator Is a portion of tissue part of the heart primordium which will give rise to the endocardium. Ceri 2010-07-21T02:50:10Z zebrafish_anatomy ZFA:0005489 endocardial precursor ZFA:0005489 Is a portion of tissue part of the heart primordium which will give rise to the endocardium. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of tissue that will develop into the myocardium. Ceri 2010-07-21T02:53:48Z zebrafish_anatomy ZFA:0005490 myocardial precursor ZFA:0005490 Portion of tissue that will develop into the myocardium. GOC:cvs ORCiD:0000-0002-2244-7917 Groove that is in the ventral optic cup remnant of the optic fissure. Ceri 2010-07-21T03:00:49Z zebrafish_anatomy optic fissure ZFA:0005491 optic furrow ZFA:0005491 Groove that is in the ventral optic cup remnant of the optic fissure. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090819-12 Fossa where the hyomandibula articulates with the sphenotic and prootic to form the hyomandibular-otic region joint. Ceri 2010-07-22T11:19:01Z TAO:0002090 zebrafish_anatomy ZFA:0005492 sphenotic-prootic fossa ZFA:0005492 Fossa where the hyomandibula articulates with the sphenotic and prootic to form the hyomandibular-otic region joint. ZFIN:ZDB-PUB-961014-192 true ZFA:0005493 Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages. Ceri 2010-07-22T11:20:29Z TAO:0001890 VSAO:0000128 zebrafish_anatomy ZFA:0005494 skeletal element ZFA:0005494 Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages. VSAO:curator Surface structure that is a portion of skin that projects or hangs from the body. Ceri 2010-07-22T11:21:23Z TAO:0001951 zebrafish_anatomy ZFA:0005495 skin flap ZFA:0005495 Surface structure that is a portion of skin that projects or hangs from the body. TAO:curator Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout. Ceri 2010-07-22T11:22:07Z TAO:0001712 zebrafish_anatomy ZFA:0005496 snout ZFA:0005496 Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout. TAO:curator Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired. Ceri 2010-07-22T12:32:09Z TAO:0001842 zebrafish_anatomy ZFA:0005497 epihyal-ceratohyal joint ZFA:0005497 Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired. TAO:curator Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired. Ceri 2010-07-22T12:32:23Z TAO:0001849 zebrafish_anatomy ZFA:0005498 epihyal-branchiostegal ray joint ZFA:0005498 Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired. TAO:curator Fine ridges on surface of scale, often parallel to the circumference of scale. Ceri 2010-07-22T12:33:11Z TAO:0002051 circuli zebrafish_anatomy ZFA:0005499 circulus ZFA:0005499 Fine ridges on surface of scale, often parallel to the circumference of scale. TAO:curator http://www.briancoad.com/main.asp?page=fishdictionary.htm circuli Is a bony partially gas filled sphere located ventral and anterior to the inner ear. The prootic bulla is paired. Ceri 2010-07-22T02:22:46Z TAO:0002111 zebrafish_anatomy ZFA:0005500 prootic bulla ZFA:0005500 Is a bony partially gas filled sphere located ventral and anterior to the inner ear. The prootic bulla is paired. GOC:ymb ORCiD:0000-0002-9900-7880 Interopercular-mandibular ligament is a ligament that connects the interopercle to the retroarticular element of the lower jaw. Ceri 2010-07-22T12:38:04Z TAO:0001687 interoperculomandibular ligament zebrafish_anatomy ZFA:0005501 The interopercle ossifies in the interoperculomandibular ligament, which attaches to the retroarticular. The interopercle approximates and is ligamentously attached to the retroarticular anteroventrally. ZDB-PUB-961014-192. Need develops_in relationship for interopercle. interopercular-mandibular ligament ZFA:0005501 Interopercular-mandibular ligament is a ligament that connects the interopercle to the retroarticular element of the lower jaw. TAO:curator ZFIN:ZDB-PUB-961014-192 interoperculomandibular ligament ZFIN:ZDB-PUB-961014-192 Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine. Ceri 2010-07-22T12:38:20Z TAO:0001944 zebrafish_anatomy ZFA:0005502 lateral ethmoid-autopalatine ligament ZFA:0005502 Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine. TAO:curator Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid. Ceri 2010-07-22T12:38:32Z TAO:0001685 zebrafish_anatomy ZFA:0005503 lateral ethmoid-ectopterygoid ligament ZFA:0005503 Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid. TAO:curator Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5. Ceri 2010-07-22T01:33:36Z TAO:0001940 zebrafish_anatomy ZFA:0005504 vertebra 4-vertebra 5 joint ZFA:0005504 Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5. TAO:curator Joint between the centra, and sometimes the neural arches or parapophyses. Ceri 2010-07-22T01:33:50Z TAO:0002054 zebrafish_anatomy ZFA:0005505 vertebra 5-vertebra 6 joint ZFA:0005505 Joint between the centra, and sometimes the neural arches or parapophyses. TAO:curator Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7. Ceri 2010-07-22T01:34:02Z TAO:0002055 zebrafish_anatomy ZFA:0005506 vertebra 6 - vertebra 7 joint ZFA:0005506 Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7. TAO:curator Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium. Ceri 2010-07-23T11:47:54Z TAO:0002035 zebrafish_anatomy ZFA:0005507 nasal capsule ZFA:0005507 Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium. GOC:cvs ORCiD:0000-0002-2244-7917 Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel. Ceri 2010-07-23T12:08:04Z TAO:0001969 zebrafish_anatomy ZFA:0005508 inner mental barbel ZFA:0005508 Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel. TAO:curator Anatomical cluster that is the upper roof of the mouth that is roofed by bones such as the parasphenoid, prevomer, metapterygoid, orbitosphenoid. Ceri 2010-07-23T12:10:28Z TAO:0002093 zebrafish_anatomy ZFA:0005509 palate ZFA:0005509 Anatomical cluster that is the upper roof of the mouth that is roofed by bones such as the parasphenoid, prevomer, metapterygoid, orbitosphenoid. TAO:curator Shallow area that exists on the prootic. Ceri 2010-07-23T12:30:37Z TAO:0002052 zebrafish_anatomy ZFA:0005510 prootic depression ZFA:0005510 Shallow area that exists on the prootic. TAO:curator Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal. Ceri 2010-07-23T12:32:05Z TAO:0001932 zebrafish_anatomy ZFA:0005511 sensory canal tubular ossicle ZFA:0005511 Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal. TAO:curator Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin. Ceri 2010-07-23T12:45:32Z TAO:0001713 caudal principal lepidotrichium 1 caudal principal ray 1 zebrafish_anatomy ZFA:0005512 caudal fin principal ray 1 ZFA:0005512 Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 2. Ceri 2010-07-23T01:01:02Z TAO:0001715 caudal principal lepidotrichium 3 caudal principal ray 3 zebrafish_anatomy ZFA:0005513 caudal fin principal ray 3 ZFA:0005513 Caudal principal ray that is ventrally adjacent to caudal principal ray 2. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 1. Ceri 2010-07-23T12:57:40Z TAO:0001714 caudal principal lepidotrichium 2 caudal principal ray 2 zebrafish_anatomy ZFA:0005514 caudal fin principal ray 2 ZFA:0005514 Caudal principal ray that is ventrally adjacent to caudal principal ray 1. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 3. Ceri 2010-07-23T01:01:37Z TAO:0001716 caudal principal lepidotrichium 4 caudal principal ray 4 zebrafish_anatomy ZFA:0005515 caudal fin principal ray 4 ZFA:0005515 Caudal principal ray that is ventrally adjacent to caudal principal ray 3. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 4. Ceri 2010-07-23T01:02:04Z TAO:0001717 caudal principal lepidotrichium 5 caudal principal ray 5 zebrafish_anatomy ZFA:0005516 caudal fin principal ray 5 ZFA:0005516 Caudal principal ray that is ventrally adjacent to caudal principal ray 4. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 5. Ceri 2010-07-23T01:02:36Z TAO:0001718 caudal principal lepidotrichium 6 caudal principal ray 6 zebrafish_anatomy ZFA:0005517 caudal fin principal ray 6 ZFA:0005517 Caudal principal ray that is ventrally adjacent to caudal principal ray 5. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 6. Ceri 2010-07-23T01:02:36Z TAO:0001719 caudal principal lepidotrichium 7 caudal principal ray 7 zebrafish_anatomy ZFA:0005518 caudal fin principal ray 7 ZFA:0005518 Caudal principal ray that is ventrally adjacent to caudal principal ray 6. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 7. Ceri 2010-07-23T01:02:36Z TAO:0001720 caudal principal lepidotrichium 8 caudal principal ray 8 zebrafish_anatomy ZFA:0005519 caudal fin principal ray 8 ZFA:0005519 Caudal principal ray that is ventrally adjacent to caudal principal ray 7. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 8. Ceri 2010-07-23T01:02:36Z TAO:0001721 caudal principal lepidotrichium 9 caudal principal ray 9 zebrafish_anatomy ZFA:0005520 caudal fin principal ray 9 ZFA:0005520 Caudal principal ray that is ventrally adjacent to caudal principal ray 8. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 9. Ceri 2010-07-23T01:02:36Z TAO:0001722 caudal principal lepidotrichium 10 caudal principal ray 10 zebrafish_anatomy ZFA:0005521 caudal fin principal ray 10 ZFA:0005521 Caudal principal ray that is ventrally adjacent to caudal principal ray 9. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 10. Ceri 2010-07-23T01:02:36Z TAO:0001723 caudal principal lepidotrichium 11 caudal principal ray 11 zebrafish_anatomy ZFA:0005522 caudal fin principal ray 11 ZFA:0005522 Caudal principal ray that is ventrally adjacent to caudal principal ray 10. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 11. Ceri 2010-07-23T01:02:36Z TAO:0001724 caudal principal lepidotrichium 12 caudal principal ray 12 zebrafish_anatomy ZFA:0005523 caudal fin principal ray 12 ZFA:0005523 Caudal principal ray that is ventrally adjacent to caudal principal ray 11. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 13. Ceri 2010-07-23T01:02:36Z TAO:0001726 caudal principal lepidotrichium 14 caudal principal ray 14 zebrafish_anatomy ZFA:0005524 caudal fin principal ray 14 ZFA:0005524 Caudal principal ray that is ventrally adjacent to caudal principal ray 13. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 14. Ceri 2010-07-23T01:02:36Z TAO:0001727 caudal principal lepidotrichium 15 caudal principal ray 15 zebrafish_anatomy ZFA:0005525 caudal fin principal ray 15 ZFA:0005525 Caudal principal ray that is ventrally adjacent to caudal principal ray 14. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 15. Ceri 2010-07-23T01:02:36Z TAO:0001728 caudal principal lepidotrichium 16 caudal principal ray 16 zebrafish_anatomy ZFA:0005526 caudal fin principal ray 16 ZFA:0005526 Caudal principal ray that is ventrally adjacent to caudal principal ray 15. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 16. Ceri 2010-07-23T01:02:36Z TAO:0001729 caudal principal lepidotrichium 17 caudal principal ray 17 zebrafish_anatomy ZFA:0005527 caudal fin principal ray 17 ZFA:0005527 Caudal principal ray that is ventrally adjacent to caudal principal ray 16. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 17. Ceri 2010-07-23T01:02:36Z TAO:0001730 caudal principal lepidotrichium 18 caudal principal ray 18 zebrafish_anatomy ZFA:0005528 caudal fin principal ray 18 ZFA:0005528 Caudal principal ray that is ventrally adjacent to caudal principal ray 17. TAO:curator Caudal principal ray that is ventrally adjacent to caudal principal ray 18. Ceri 2010-07-23T01:02:36Z TAO:0001731 caudal principal lepidotrichium 19 caudal principal ray 19 zebrafish_anatomy ZFA:0005529 caudal fin principal ray 19 ZFA:0005529 Caudal principal ray that is ventrally adjacent to caudal principal ray 18. TAO:curator Scale that is associated with the lateral line sensory canal. Ceri 2010-07-23T01:49:27Z TAO:0001824 zebrafish_anatomy ZFA:0005530 lateral line scale ZFA:0005530 Scale that is associated with the lateral line sensory canal. TAO:curator The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit. Ceri 2010-07-23T01:52:58Z TAO:0001686 zebrafish_anatomy ZFA:0005531 bony shelf above orbit ZFA:0005531 The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit. TAO:curator Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series. Ceri 2010-07-23T01:53:33Z TAO:0002053 zebrafish_anatomy ZFA:0005532 bony plate ZFA:0005532 Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series. TAO:curator Caudal fin lepidotrichium that is distally branched. Ceri 2010-07-23T01:55:31Z TAO:0002062 zebrafish_anatomy ZFA:0005533 branched caudal fin ray ZFA:0005533 Caudal fin lepidotrichium that is distally branched. TAO:curator Dorsal fin ray that is distally branched. Ceri 2010-07-23T01:55:54Z TAO:0001785 zebrafish_anatomy ZFA:0005534 branched dorsal fin ray ZFA:0005534 Dorsal fin ray that is distally branched. GOC:cvs ORCiD:0000-0002-2244-7917 Anal fin lepidotrichium that is distally branched. Ceri 2010-07-23T01:56:47Z TAO:0001992 anal fin branched ray zebrafish_anatomy ZFA:0005535 branched anal fin ray ZFA:0005535 Anal fin lepidotrichium that is distally branched. TAO:curator Anatomical space between bones of the neurocranium. Frequently closes during development. Ceri 2010-07-29T06:27:16Z TAO:0001738 zebrafish_anatomy ZFA:0005536 fontanel ZFA:0005536 Anatomical space between bones of the neurocranium. Frequently closes during development. GOC:cvs ORCiD:0000-0002-2244-7917 Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired. Ceri 2010-07-29T06:28:46Z TAO:0002011 zebrafish_anatomy ZFA:0005537 lateral fontanel of frontal ZFA:0005537 Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired. TAO:curator Rib that articulates with the parapophysis of the first centrum. Ceri 2010-07-29T06:29:54Z TAO:0001879 zebrafish_anatomy ZFA:0005538 rib of vertebra 1 ZFA:0005538 Rib that articulates with the parapophysis of the first centrum. TAO:curator Rib that articulates with the parapophysis of the second centrum. Ceri 2010-07-29T06:30:06Z TAO:0001878 zebrafish_anatomy ZFA:0005539 rib of vertebra 2 ZFA:0005539 Rib that articulates with the parapophysis of the second centrum. TAO:curator Rib that articulates with the parapophysis of the third centrum. Ceri 2010-07-29T06:30:18Z TAO:0001880 zebrafish_anatomy ZFA:0005540 rib of vertebra 3 ZFA:0005540 Rib that articulates with the parapophysis of the third centrum. TAO:curator Rib that articulates with the parapophysis of the fourth centrum. Ceri 2010-07-29T06:30:34Z TAO:0001881 zebrafish_anatomy ZFA:0005541 rib of vertebra 4 ZFA:0005541 Rib that articulates with the parapophysis of the fourth centrum. TAO:curator Rib that articulates with the parapophysis of the fifth centrum. Ceri 2010-07-29T06:30:51Z TAO:0001751 zebrafish_anatomy ZFA:0005542 rib of vertebra 5 ZFA:0005542 Rib that articulates with the parapophysis of the fifth centrum. TAO:curator Rib that articulates with the parapophysis of the sixth centrum. Ceri 2010-07-29T06:31:02Z TAO:0001750 zebrafish_anatomy ZFA:0005543 rib of vertebra 6 ZFA:0005543 Rib that articulates with the parapophysis of the sixth centrum. TAO:curator Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired. Ceri 2010-07-30T10:38:51Z TAO:0001947 hyomandibula-sphenotic-prootic joint zebrafish_anatomy ZFA:0005544 hyomandibular-otic region joint ZFA:0005544 Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired. TAO:curator Actinotrichium that is part of the pectoral fin. Ceri 2010-07-30T10:50:19Z TAO:0000544 zebrafish_anatomy ZFA:0005545 pectoral fin actinotrichium ZFA:0005545 Actinotrichium that is part of the pectoral fin. TAO:curator Actinotrichium that is part of the pelvic fin. Ceri 2010-07-30T10:50:46Z TAO:0000596 zebrafish_anatomy ZFA:0005546 pelvic fin actinotrichium ZFA:0005546 Actinotrichium that is part of the pelvic fin. TAO:curator Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched. Ceri 2010-07-30T10:55:24Z TAO:0001761 zebrafish_anatomy ZFA:0005547 pectoral fin lepidotrichium 1 ZFA:0005547 Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched. TAO:curator Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray, usually branched and segmented. Ceri 2010-07-30T10:58:18Z TAO:0001762 zebrafish_anatomy ZFA:0005548 pectoral fin lepidotrichium 2 ZFA:0005548 Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray, usually branched and segmented. TAO:curator Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray, usually branched and segmented. Ceri 2010-07-30T10:58:24Z TAO:0001763 zebrafish_anatomy ZFA:0005549 pectoral fin lepidotrichium 3 ZFA:0005549 Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray, usually branched and segmented. TAO:curator Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray, usually branched and segmented. Ceri 2010-07-30T10:59:08Z TAO:0001766 zebrafish_anatomy ZFA:0005550 pectoral fin lepidotrichium 6 ZFA:0005550 Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray, usually branched and segmented. TAO:curator Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray, usually branched and segmented. Ceri 2010-07-30T10:59:13Z TAO:0001767 zebrafish_anatomy ZFA:0005551 pectoral fin lepidotrichium 7 ZFA:0005551 Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray, usually branched and segmented. TAO:curator Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray , usually branched and segmented. Ceri 2010-07-30T10:59:20Z TAO:0001765 zebrafish_anatomy ZFA:0005552 pectoral fin lepidotrichium 5 ZFA:0005552 Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray , usually branched and segmented. TAO:curator Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray, usually branched and segmented. Ceri 2010-07-30T10:59:26Z TAO:0001764 zebrafish_anatomy ZFA:0005553 pectoral fin lepidotrichium 4 ZFA:0005553 Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray, usually branched and segmented. TAO:curator First lepidotrichium of pelvic fin. Ceri 2010-07-30T11:13:56Z TAO:0001776 zebrafish_anatomy ZFA:0005554 pelvic fin lepidotrichium 1 ZFA:0005554 First lepidotrichium of pelvic fin. GOC:cvs ORCiD:0000-0002-2244-7917 Second lepidotrichium of pelvic fin. Ceri 2010-07-30T11:15:37Z TAO:0001777 zebrafish_anatomy ZFA:0005555 pelvic fin lepidotrichium 2 ZFA:0005555 Second lepidotrichium of pelvic fin. GOC:cvs ORCiD:0000-0002-2244-7917 Fourth lepidotrichium of pelvic fin. Ceri 2010-07-30T11:15:48Z TAO:0001779 zebrafish_anatomy ZFA:0005556 pelvic fin lepidotrichium 4 ZFA:0005556 Fourth lepidotrichium of pelvic fin. GOC:cvs ORCiD:0000-0002-2244-7917 Third lepidotrichium of pelvic fin. Ceri 2010-07-30T11:15:48Z TAO:0001778 zebrafish_anatomy ZFA:0005557 pelvic fin lepidotrichium 3 ZFA:0005557 Third lepidotrichium of pelvic fin. GOC:cvs ORCiD:0000-0002-2244-7917 Anatomical space that is the concavity containing the eye. Ceri 2010-07-30T11:17:20Z TAO:0001967 zebrafish_anatomy ZFA:0005558 orbit ZFA:0005558 Anatomical space that is the concavity containing the eye. TAO:curator Portion of vessel wall that extends to form a new vessel. Ceri 2010-09-23T05:54:14Z zebrafish_anatomy angiogenic sprout ZFA:0005559 vascular sprouts ZFA:0005559 Portion of vessel wall that extends to form a new vessel. GOC:cvs ORCiD:0000-0002-2244-7917 Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is paired. Ceri 2010-09-24T11:52:49Z TAO:0001832 zebrafish_anatomy ZFA:0005560 parasphenoid-basioccipital joint ZFA:0005560 Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is paired. TAO:curator Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye. Ceri 2010-11-10T01:16:52Z TAO:0002290 vitreous body vitreous humor zebrafish_anatomy ZFA:0005561 vitreous ZFA:0005561 Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye. GOC:cvs ORCiD:0000-0002-2244-7917 PMID:18344966 Acellular anatomical structure that is the innermost layer of the optic choroid. Ceri 2010-11-10T02:16:43Z vitreous lamina zebrafish_anatomy ZFA:0005562 Bruch's membrane ZFA:0005562 Acellular anatomical structure that is the innermost layer of the optic choroid. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070614-11 Multi-tissue structure that composes the opaque fibrous outer layer of the eye. Ceri 2010-11-11T10:53:23Z TAO:0002289 zebrafish_anatomy ZFA:0005563 sclera ZFA:0005563 Multi-tissue structure that composes the opaque fibrous outer layer of the eye. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells. Ceri 2010-11-11T11:10:25Z TAO:0002288 zebrafish_anatomy ZFA:0005564 aqueous humor ZFA:0005564 Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place. Ceri 2010-11-11T01:59:44Z CL:0002450 zebrafish_anatomy ZFA:0005565 tether cell ZFA:0005565 A specialized hair cell that has an elongated kinocilium upon which an otolith accretes. The tether cell then anchors the otolith in place. ZFIN:ZDB-PUB-971216-3 Anatomical cluster comprising the rostral portion of the eye; the cornea, lens, iris, ciliary zone, anterior chamber, and annular ligament. Ceri 2010-11-11T05:44:57Z zebrafish_anatomy ZFA:0005566 anterior segment eye ZFA:0005566 Anatomical cluster comprising the rostral portion of the eye; the cornea, lens, iris, ciliary zone, anterior chamber, and annular ligament. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 Anatomical cluster comprising the caudal portion of the eye: the retina, posterior chamber, optic choroid, and vitreous. Ceri 2010-11-12T11:52:42Z zebrafish_anatomy ZFA:0005567 posterior segment eye ZFA:0005567 Anatomical cluster comprising the caudal portion of the eye: the retina, posterior chamber, optic choroid, and vitreous. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 Blood vessels within the stroma of the iris. The vessels cluster and are more dense at the base of the stroma where the iris is thicker. Ceri 2010-12-01T02:00:15Z zebrafish_anatomy ZFA:0005568 iris blood vessels ZFA:0005568 Blood vessels within the stroma of the iris. The vessels cluster and are more dense at the base of the stroma where the iris is thicker. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 Portion of the iris which contains bundles of fibers, most of which are oriented radially around the pupil. The stroma is innervated by the iris blood vessels and develops from the periocular mesenchyme. Ceri 2010-12-01T02:28:06Z zebrafish_anatomy ZFA:0005569 iris stroma ZFA:0005569 Portion of the iris which contains bundles of fibers, most of which are oriented radially around the pupil. The stroma is innervated by the iris blood vessels and develops from the periocular mesenchyme. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 The line where the cornea and the sclera meet. Ceri 2010-11-12T03:45:32Z zebrafish_anatomy ZFA:0005570 corneo-scleral junction ZFA:0005570 The line where the cornea and the sclera meet. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090309-8 Duct present in the angle where the cornea meets the ciliary zone that absorbs the aqueous humor. Ceri 2010-11-12T03:51:50Z zebrafish_anatomy ZFA:0005571 ventral canal eye ZFA:0005571 Duct present in the angle where the cornea meets the ciliary zone that absorbs the aqueous humor. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 Head mesenchyme surrounding the immature eye that gives rise to specialized structures of the anterior segment of the eye. Ceri 2010-12-02T12:29:18Z zebrafish_anatomy ZFA:0005572 periocular mesenchyme ZFA:0005572 Head mesenchyme surrounding the immature eye that gives rise to specialized structures of the anterior segment of the eye. ZFIN:ZDB-PUB-050701-15 Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary. Ceri 2010-12-02T06:08:45Z zonules zebrafish_anatomy ZFA:0005573 zonule ZFA:0005573 Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050701-15 zonules The lens capsule is a modified basement membrane that completely surrounds the ocular lens. Ceri 2010-12-03T11:36:36Z zebrafish_anatomy ZFA:0005574 lens capsule ZFA:0005574 The lens capsule is a modified basement membrane that completely surrounds the ocular lens. GOC:cvs ORCiD:0000-0002-2244-7917 PMID:18773892 Portion of tissue that are compact accumulations of neurons having roughly similar connections and functions. Ceri 2011-01-28T05:31:14Z brain nuclei zebrafish_anatomy ZFA:0005575 brain nucleus ZFA:0005575 Portion of tissue that are compact accumulations of neurons having roughly similar connections and functions. GOC:mh ISBN:0878937420 ORCiD:0000-0001-9114-8737 brain nuclei Brain nuclei located in the ventral thalamus. Ceri 2011-02-24T04:49:33Z zebrafish_anatomy ZFA:0005576 ventral thalamus nucleus ZFA:0005576 Brain nuclei located in the ventral thalamus. GOC:cvs ORCiD:0000-0002-2244-7917 Ceri 2011-02-24T04:54:52Z zebrafish_anatomy ZFA:0005577 tegmental nucleus ZFA:0005577 The multi-tissue structure that is the beginning of the spinal nerve leaving the spinal cord. Ceri 2011-03-04T05:17:42Z zebrafish_anatomy ZFA:0005578 spinal nerve root ZFA:0005578 The multi-tissue structure that is the beginning of the spinal nerve leaving the spinal cord. http://en.wikipedia.org/wiki/Nerve_root Integument ionocyte rich in Na-Cl co-transporter (NCC) activity. Ceri 2011-03-07T02:03:05Z NCC cell zebrafish_anatomy ZFA:0005579 NCC ionocyte ZFA:0005579 Integument ionocyte rich in Na-Cl co-transporter (NCC) activity. ZFIN:ZDB-PUB-090318-15 Rostral portion of pars anterior of the adenohypophysis where corticotropes and lactotropes localize. Ceri 2011-04-13T11:44:33Z rostral pars distalis zebrafish_anatomy ZFA:0005580 rostral pars anterior ZFA:0005580 Rostral portion of pars anterior of the adenohypophysis where corticotropes and lactotropes localize. ZFIN:ZDB-PUB-080616-4 Caudal portion of pars anterior of the adenohypophysis where somatotropes, thyrotropes and gonadotropes are localized. The proximal pars anterior has functional homology to the mammalian pars tuberalis, secreting the same hormones. Ceri 2011-04-13T02:37:52Z proximal pars distalis zebrafish_anatomy ZFA:0005581 proximal pars anterior ZFA:0005581 Caudal portion of pars anterior of the adenohypophysis where somatotropes, thyrotropes and gonadotropes are localized. The proximal pars anterior has functional homology to the mammalian pars tuberalis, secreting the same hormones. ZFIN:ZDB-PUB-080616-4 Cluster of cells along the edge of the neural plate that have the potential to become neuroblast. Ceri 2011-04-14T02:02:16Z zebrafish_anatomy ZFA:0005582 dorsal proneural cluster ZFA:0005582 Cluster of cells along the edge of the neural plate that have the potential to become neuroblast. ZFIN:ZDB-PUB-990921-1 Cluster of cells along the center of the neural plate that have the potential to become neuroblast. Ceri 2011-04-14T02:02:55Z zebrafish_anatomy ZFA:0005583 ventral proneural cluster ZFA:0005583 Cluster of cells along the center of the neural plate that have the potential to become neuroblast. ZFIN:ZDB-PUB-990921-1 Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons. Ceri 2011-04-26T04:10:09Z zebrafish_anatomy ZFA:0005584 developing mesonephric nephron ZFA:0005584 Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons. GOC:cvs ORCiD:0000-0002-2244-7917 Renal duct that will develop into the mesonephric proximal tubule. Ceri 2011-04-27T10:55:07Z zebrafish_anatomy ZFA:0005585 developing mesonephric proximal tubule ZFA:0005585 Renal duct that will develop into the mesonephric proximal tubule. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Hollow cluster of epithelial cells derived from the nephron progenitor. Ceri 2011-04-26T04:25:56Z stage I nephron zebrafish_anatomy ZFA:0005586 renal vesicle ZFA:0005586 Hollow cluster of epithelial cells derived from the nephron progenitor. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110131-33 Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells. Ceri 2011-04-26T04:26:56Z zebrafish_anatomy ZFA:0005587 nephron progenitor ZFA:0005587 Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110131-33 Developing nephron with a comma shaped appearance. Ceri 2011-04-26T04:41:04Z zebrafish_anatomy ZFA:0005588 comma-shaped body ZFA:0005588 Developing nephron with a comma shaped appearance. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110131-33 Developing nephron with a tubular morphology that has a renal corpuscle anlage at the distal end. Ceri 2011-04-26T05:07:54Z zebrafish_anatomy stage II nephron ZFA:0005589 s-shaped body ZFA:0005589 Developing nephron with a tubular morphology that has a renal corpuscle anlage at the distal end. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110131-33 Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft. Ceri 2011-04-26T05:45:15Z zebrafish_anatomy ZFA:0005590 capillary loop nephron ZFA:0005590 Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft. GOC:cvs ORCiD:0000-0002-2244-7917 Renal duct that will develop into the mesonephric distal tubule. Ceri 2011-04-27T10:55:41Z zebrafish_anatomy ZFA:0005591 developing mesonephric distal tubule ZFA:0005591 Renal duct that will develop into the mesonephric distal tubule. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 A branched nephron of the mature kidney. Ceri 2011-04-27T12:15:19Z stage IV nephron zebrafish_anatomy ZFA:0005592 mesonephric nephron ZFA:0005592 A branched nephron of the mature kidney. ZFIN:ZDB-PUB-110131-33 An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis. Ceri 2011-05-02T01:03:43Z zebrafish_anatomy ZFA:0005593 neuraxis flexure ZFA:0005593 An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis. GOC:cvs ORCiD:0000-0002-2244-7917 Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. ZFIN 2011-03-22T10:34:12Z CARO:0000010 zebrafish_anatomy ZFA:0005594 anatomical surface ZFA:0005594 Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. CARO:MAH ORCiD:0000-0001-9114-8737 Caudal principal ray that is ventrally adjacent to caudal principal ray 12. Ceri 2011-11-04T02:44:32Z TAO:0001725 caudal principal lepidotrichium 13 caudal principal ray 13 zebrafish_anatomy ZFA:0005595 caudal fin principal ray 13 ZFA:0005595 Caudal principal ray that is ventrally adjacent to caudal principal ray 12. TAO:curator Fin that is one of a pair located ventrally on the organism. Ceri 2011-11-11T11:22:21Z TAO:0002278 zebrafish_anatomy ZFA:0005596 paired fin ZFA:0005596 Fin that is one of a pair located ventrally on the organism. TAO:curator Fin that is an unpaired fin located in the sagittal plane of the organism. Ceri 2011-11-11T11:33:02Z TAO:0002276 zebrafish_anatomy ZFA:0005597 median fin ZFA:0005597 Fin that is an unpaired fin located in the sagittal plane of the organism. TAO:curator Ghrelin secreting cells found in the found in the exocrine pancreas. Ceri 2011-11-17T01:02:01Z ZFA:0009382 CL:0005019 pancreatic E cell zebrafish_anatomy ZFA:0005598 In mammals the endocrine pancreas is called the Islets of Langerhans. pancreatic epsilon cell ZFA:0005598 Ghrelin secreting cells found in the found in the exocrine pancreas. PMID:14970313 A cell that secretes ghrelin, the peptide hormone that stimulates hunger. Ceri 2011-11-17T01:03:24Z ZFA:0009381 CL:0005018 zebrafish_anatomy ZFA:0005599 ghrelin secreting cell ZFA:0005599 A cell that secretes ghrelin, the peptide hormone that stimulates hunger. CL:curator Region at venious pole of heart tube that initiates heart beat. Ceri 2011-11-22T04:14:44Z zebrafish_anatomy ZFA:0005600 sinoatrial region ZFA:0005600 Region at venious pole of heart tube that initiates heart beat. ZFIN:ZDB-PUB-101115-23 Ring of cardiac conduction tissue around the sinoatrial region of the heart tube that performs pacemaker function. Ceri 2011-11-22T04:16:19Z zebrafish_anatomy ZFA:0005601 sinoatrial ring ZFA:0005601 Ring of cardiac conduction tissue around the sinoatrial region of the heart tube that performs pacemaker function. ZFIN:ZDB-PUB-101115-23 Supraneural located posterior to supraneural 9. This supraneural does not appear in most specimens. jonknight 2011-12-05T12:56:49Z zebrafish_anatomy ZFA:0005602 supraneural 10 ZFA:0005602 Supraneural located posterior to supraneural 9. This supraneural does not appear in most specimens. ZFIN:ZDB-PUB-031103-13 Portion of vessel wall that extends to form a new lymph vessel. Ceri 2011-12-27T12:39:43Z zebrafish_anatomy ZFA:0005603 lymphangiogenic sprout ZFA:0005603 Portion of vessel wall that extends to form a new lymph vessel. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-100719-62 Portion of vessel wall that extends to form a new blood vessel. Ceri 2011-12-27T12:41:09Z zebrafish_anatomy ZFA:0005604 angiogenic sprout ZFA:0005604 Portion of vessel wall that extends to form a new blood vessel. GOC:cvs ORCiD:0000-0002-2244-7917 The primordial vasculature that will develop into lymph vessels. The lymphangioblast cord is composed of lymphangioblast or lymph endothelial cells in a solid linear mass called a cord. The cord then undergoes morphogenesis to form the lumen of the vessel. Ceri 2011-12-27T12:45:30Z parachordal lymphangioblast string zebrafish_anatomy ZFA:0005605 lymphangioblast cord ZFA:0005605 The primordial vasculature that will develop into lymph vessels. The lymphangioblast cord is composed of lymphangioblast or lymph endothelial cells in a solid linear mass called a cord. The cord then undergoes morphogenesis to form the lumen of the vessel. ZFIN:ZDB-PUB-100719-62 parachordal lymphangioblast string ZFIN:ZDB-PUB-110613-5 Anatomical cluster of skeletal elements that forms the roof over the brain. Ceri 2012-01-30T12:33:01Z calvaria calvarium zebrafish_anatomy calva skullcap ZFA:0005606 cranial vault ZFA:0005606 Anatomical cluster of skeletal elements that forms the roof over the brain. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060323-12 calvaria Fibrous joint connecting the parietal bones. Ceri 2012-01-30T02:35:47Z TAO:0005245 zebrafish_anatomy sagittal suture ZFA:0005607 inter-parietal joint ZFA:0005607 Fibrous joint connecting the parietal bones. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060323-12 Fibrous joint connecting the frontal bone to the parietal bone. This joint remains patent in zebrafish throughout their lifetime. Ceri 2012-01-30T02:37:39Z TAO:0005255 zebrafish_anatomy coronal suture ZFA:0005608 frontal-parietal joint ZFA:0005608 Fibrous joint connecting the frontal bone to the parietal bone. This joint remains patent in zebrafish throughout their lifetime. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060323-12 ZFIN:ZDB-PUB-111111-5 Fibrous joint connecting the supraoccipital to the parietal bone. Ceri 2012-01-30T02:48:16Z TAO:0005264 zebrafish_anatomy lamdoid suture ZFA:0005609 supraoccipital-parietal joint ZFA:0005609 Fibrous joint connecting the supraoccipital to the parietal bone. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060323-12 lamdoid suture ZFIN:ZDB-PUB-060323-12 Joint in which the articulating bones are connected by bone. Ceri 2012-01-30T03:09:13Z zebrafish_anatomy ZFA:0005610 synostosis ZFA:0005610 Joint in which the articulating bones are connected by bone. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Synostosis where the entopterygoid meets the quadrate. Ceri 2012-01-30T03:28:11Z ectopterygoid-quadrate synostosis zebrafish_anatomy ZFA:0005611 ectopterygoid-quadrate joint ZFA:0005611 Synostosis where the entopterygoid meets the quadrate. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Synostosis where the ectopterygoid meets the entopterygoid. Ceri 2012-01-30T03:31:09Z ectopterygoid-entopterygoid synostosis zebrafish_anatomy ZFA:0005612 ectopterygoid-entopterygoid joint ZFA:0005612 Synostosis where the ectopterygoid meets the entopterygoid. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Synchondrosis where the basioccipital meets the prootic anteriorly. Ceri 2012-01-31T03:48:07Z zebrafish_anatomy ZFA:0005613 basioccipital-prootic joint ZFA:0005613 Synchondrosis where the basioccipital meets the prootic anteriorly. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Synostosis where the entopterygoid meets the metapterygoid. The metapterygoid has an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. Ceri 2012-01-30T03:45:11Z entopterygoid-metapterygoid synostosis zebrafish_anatomy ZFA:0005614 entopterygoid-metapterygoid joint ZFA:0005614 Synostosis where the entopterygoid meets the metapterygoid. The metapterygoid has an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Opening formed between the ventral border of the metapterygoid and the dorsal border of the symplectic. Ceri 2012-01-30T03:53:50Z zebrafish_anatomy ZFA:0005615 metapterygoid-symplectic fenestra ZFA:0005615 Opening formed between the ventral border of the metapterygoid and the dorsal border of the symplectic. ZFIN:ZDB-PUB-961014-192 Synchondrosis where the quadrate meets the entopterygoid dorsally. Ceri 2012-01-30T03:57:23Z zebrafish_anatomy ZFA:0005616 quadrate-entopterygoid joint ZFA:0005616 Synchondrosis where the quadrate meets the entopterygoid dorsally. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Synostosis where anteromedial extensions of the lateral ethmoid project to meet the supraethmoid dorsally. Ceri 2012-02-09T11:27:00Z zebrafish_anatomy ZFA:0005617 lateral ethmoid-supraethmoid ZFA:0005617 Synostosis where anteromedial extensions of the lateral ethmoid project to meet the supraethmoid dorsally. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Cartilaginous joint that articulates the anguloarticular posteroventrally with the retroarticular. Ceri 2012-02-09T11:51:45Z zebrafish_anatomy ZFA:0005618 anguloarticular-retroarticular joint ZFA:0005618 Cartilaginous joint that articulates the anguloarticular posteroventrally with the retroarticular. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Connective tissue that functions in mechanical and structural support. Ceri 2012-02-09T03:59:26Z VSAO:0000015 zebrafish_anatomy ZFA:0005619 skeletal tissue ZFA:0005619 Connective tissue that functions in mechanical and structural support. VSAO:curator A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification. Ceri 2012-02-09T02:36:59Z VSAO:0000139 zebrafish_anatomy ZFA:0005620 endochondral element ZFA:0005620 A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification. VSAO:curator Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts. Ceri 2012-02-09T04:00:34Z VSAO:0000047 zebrafish_anatomy ZFA:0005621 bone tissue ZFA:0005621 Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts. VSAO:curator Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts. Ceri 2012-02-09T04:01:46Z VSAO:0000040 zebrafish_anatomy ZFA:0005622 cartilage tissue ZFA:0005622 Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts. VSAO:curator Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla. Ceri 2012-02-09T04:05:11Z VSAO:0000063 zebrafish_anatomy ZFA:0005623 odontoid tissue ZFA:0005623 Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla. VSAO:curator Skeletal element that forms as a replacement or substitution of another element or tissue. Ceri 2012-03-14T12:37:44Z zebrafish_anatomy ZFA:0005624 replacement element ZFA:0005624 Skeletal element that forms as a replacement or substitution of another element or tissue. TAO:curator Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra. Ceri 2012-03-15T03:52:38Z TAO:0005269 hypophyseal fenestrae zebrafish_anatomy ZFA:0005625 hypophyseal fenestra ZFA:0005625 Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra. ZFIN:ZDB-PUB-961014-192 hypophyseal fenestrae Synovial joint that articulates the hyomandibula and the opercle. Ceri 2012-03-15T04:19:50Z TAO:0005265 zebrafish_anatomy ZFA:0005626 hyomandibula-opercle joint ZFA:0005626 Synovial joint that articulates the hyomandibula and the opercle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Synovial joint that articulates the hyomandibula with the pterotic. Ceri 2012-03-15T04:14:40Z zebrafish_anatomy ZFA:0005627 hyomandibula-pterotic joint ZFA:0005627 Synovial joint that articulates the hyomandibula with the pterotic. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. Ceri 2012-03-15T04:23:27Z TAO:0001753 temporal fossa zebrafish_anatomy ZFA:0005628 posttemporal fossa ZFA:0005628 Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. ZFIN:ZDB-PUB-961014-192 Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII). The foramen develop in the hyosymplectic. The hyomandibular foramen are paired. Ceri 2012-03-15T04:32:30Z TAO:0005275 facial foramen facial nerve foramen hyosymplectic foramen zebrafish_anatomy ZFA:0005629 hyomandibular foramen ZFA:0005629 Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII). The foramen develop in the hyosymplectic. The hyomandibular foramen are paired. ZFIN:ZDB-PUB-961014-192 facial nerve foramen ZFIN:ZDB-PUB-961014-192 hyosymplectic foramen ZFIN:ZDB-PUB-961014-192 Fossa on the pterotic where the hyomandibula articulates. Ceri 2012-03-15T04:35:40Z TAO:0005266 zebrafish_anatomy ZFA:0005630 pterotic fossa ZFA:0005630 Fossa on the pterotic where the hyomandibula articulates. ZFIN:ZDB-PUB-961014-192 Fibrous joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic. Ceri 2012-03-20T05:02:00Z TAO:0005268 zebrafish_anatomy ZFA:0005631 preopercle horizontal limb-symplectic joint ZFA:0005631 Fibrous joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Fibrous joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula. Ceri 2012-03-20T05:04:12Z TAO:0005278 zebrafish_anatomy ZFA:0005632 preopercle vertical limb-hyomandibula joint ZFA:0005632 Fibrous joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Skeletal element which is part of lepidotrichium articulating with other lepidotrichium segments by lepidotrichium joints. Ceri 2012-04-06T02:21:01Z zebrafish_anatomy ZFA:0005633 lepidotrichium segment ZFA:0005633 Skeletal element which is part of lepidotrichium articulating with other lepidotrichium segments by lepidotrichium joints. GOC:cvs ORCiD:0000-0002-2244-7917 Joint that articulates segments of the fin ray. Ceri 2012-04-06T02:22:29Z intra-ray joint zebrafish_anatomy ZFA:0005634 lepidotrichium joint ZFA:0005634 Joint that articulates segments of the fin ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-000803-4 Odontoid tissue formed of a loose matrix of collagen. The fibrils of the predentine are homogeneously distributed and preferentially oriented along the long axis of the tooth. They are of variable thickness, measuring from 50 to 100 nm in diameter. Ceri 2012-04-19T02:42:59Z pre-dentine predentin zebrafish_anatomy ZFA:0005635 predentine ZFA:0005635 Odontoid tissue formed of a loose matrix of collagen. The fibrils of the predentine are homogeneously distributed and preferentially oriented along the long axis of the tooth. They are of variable thickness, measuring from 50 to 100 nm in diameter. ZFIN:ZDB-PUB-001208-4 Ligament that connects the intercalarium to the anterior process of the tripus and the scaphium. Ceri 2012-04-19T04:04:31Z zebrafish_anatomy ZFA:0005636 interossicular ligament ZFA:0005636 Ligament that connects the intercalarium to the anterior process of the tripus and the scaphium. ZFIN:ZDB-PUB-031103-13 ZFIN:ZDB-PUB-120214-1 Ligament that connects one rib to another. Ceri 2012-04-19T04:20:23Z TAO:0001972 zebrafish_anatomy ZFA:0005637 intercostal ligament ZFA:0005637 Ligament that connects one rib to another. TAO:curator Ligaments that runs from the parapophyses of the anteriormost centrum to the exoccipital. There are two scapulo-vertebral ligaments in zebrafish. Ceri 2012-04-24T12:23:51Z Baudelot's ligaments scapulo-vertebral ligaments zebrafish_anatomy ZFA:0005638 scapulo-vertebral ligament ZFA:0005638 Ligaments that runs from the parapophyses of the anteriormost centrum to the exoccipital. There are two scapulo-vertebral ligaments in zebrafish. ZFIN:ZDB-PUB-961014-192 scapulo-vertebral ligaments Ligament that runs from the ventral third of the supracleithrum to the exoccipital. Ceri 2012-04-24T12:25:49Z Baudelot's ligament zebrafish_anatomy ZFA:0005639 supracleithrum-vertebral ligament ZFA:0005639 Ligament that runs from the ventral third of the supracleithrum to the exoccipital. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Ligament that run from the dorsal tip of the cleithrum to the exoccipital. Ceri 2012-04-24T12:26:31Z Baudelot's ligament zebrafish_anatomy ZFA:0005640 cleithrum-vertebral ligament ZFA:0005640 Ligament that run from the dorsal tip of the cleithrum to the exoccipital. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Ligament that connects the dentary to the maxilla. Ceri 2012-04-24T01:00:12Z zebrafish_anatomy ZFA:0005641 maxillo-mandibular ligament ZFA:0005641 Ligament that connects the dentary to the maxilla. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Ligament that connects the rostral process of the maxilla to the kinethmoid. Ceri 2012-04-24T01:00:52Z zebrafish_anatomy ZFA:0005642 maxillo-rostroid ligament ZFA:0005642 Ligament that connects the rostral process of the maxilla to the kinethmoid. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Ligament that, in the adult, attaches the premaxilla to its counterpart at the midline and the kinethmoid posterodorsally. Ceri 2012-04-24T01:03:14Z zebrafish_anatomy ZFA:0005643 premaxillo-rostroid ligament ZFA:0005643 Ligament that, in the adult, attaches the premaxilla to its counterpart at the midline and the kinethmoid posterodorsally. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 The ligament that connects the anteroventral tips of ceratobranchials 5 medially. Ceri 2012-04-24T01:03:58Z zebrafish_anatomy ZFA:0005644 ceratobranchial 5 ligament ZFA:0005644 The ligament that connects the anteroventral tips of ceratobranchials 5 medially. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Short ligament that runs from the hooked anterior end of the supracleithrum to the intercalar. Ceri 2012-04-24T01:04:45Z zebrafish_anatomy ZFA:0005645 supracleithrum-intercalar ligament ZFA:0005645 Short ligament that runs from the hooked anterior end of the supracleithrum to the intercalar. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Ligament that connects the preopercle to the retroarticular anteroventrally. Ceri 2012-04-24T01:05:19Z zebrafish_anatomy ZFA:0005646 preopercle-retroarticular ligament ZFA:0005646 Ligament that connects the preopercle to the retroarticular anteroventrally. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Dense regular connective tissue that connects muscle to bone. Ceri 2012-04-24T02:02:48Z VSAO:0000073 zebrafish_anatomy ZFA:0005647 tendon ZFA:0005647 Dense regular connective tissue that connects muscle to bone. VSAO:curator Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired. Ceri 2012-04-24T05:24:57Z TAO:0001679 zebrafish_anatomy ZFA:0005648 mesethmoid-lateral ethmoid joint ZFA:0005648 Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired. TAO:curator ZFIN:ZDB-PUB-961014-192 Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired. Ceri 2012-04-24T05:26:11Z TAO:0001680 zebrafish_anatomy ZFA:0005649 mesethmoid-vomer joint ZFA:0005649 Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired. TAO:curator Adductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane. Ceri 2012-05-08T03:51:06Z zebrafish_anatomy ZFA:0005650 primitive pectoral fin adductor ZFA:0005650 Adductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 Abductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane. Ceri 2012-05-08T03:59:41Z zebrafish_anatomy ZFA:0005651 primitive pectoral fin abductor ZFA:0005651 Abductor that originates at the cleithrum the muscle fibers run in sheets along the endoskeletal disk extending dorsally and caudally from its base. Distally, the muscles insert onto the fin membrane. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050920-7 Layers of broad flat tendons. Ceri 2012-06-15T10:41:21Z aponeuroses zebrafish_anatomy ZFA:0005652 aponeurosis ZFA:0005652 Layers of broad flat tendons. GOC:cvs ORCiD:0000-0002-2244-7917 aponeuroses Portion of tissue in the vagal lobe that contains GABAergic sensory interneurons. Ceri 2012-07-03T01:25:32Z zebrafish_anatomy ZFA:0005653 vagal sensory zone ZFA:0005653 Portion of tissue in the vagal lobe that contains GABAergic sensory interneurons. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120409-2 Portion of organism substance that is the liquid matrix of blood. Ceri 2012-09-25T10:30:55Z zebrafish_anatomy ZFA:0005654 blood plasma ZFA:0005654 Portion of organism substance that is the liquid matrix of blood. GOC:cvs ORCiD:0000-0002-2244-7917 Endochondral process of the autopalatine that forms the socket of the autopalatine-preethmoid joint. Ceri 2012-09-25T03:42:27Z zebrafish_anatomy ZFA:0005655 anterior ventromedial process of autopalatine ZFA:0005655 Endochondral process of the autopalatine that forms the socket of the autopalatine-preethmoid joint. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-192 Synovial, ball and socket joint that articulates the autopalatine and the preethmoid. Ceri 2012-09-25T03:47:27Z zebrafish_anatomy ZFA:0005656 autopalatine-preethmoid joint ZFA:0005656 Synovial, ball and socket joint that articulates the autopalatine and the preethmoid. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Endochondral bone part of autopalatine that extends towards the first infraorbital. Ceri 2012-09-25T03:55:15Z zebrafish_anatomy ZFA:0005657 anterior lateral process of autopalatine ZFA:0005657 Endochondral bone part of autopalatine that extends towards the first infraorbital. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-192 Portion of organism substance found in the lymphatic system. Lymph usually consists of interstitial fluid that has made its way into the lymphatic system. Ceri 2012-11-28T03:32:48Z zebrafish_anatomy ZFA:0005658 lymph ZFA:0005658 Portion of organism substance found in the lymphatic system. Lymph usually consists of interstitial fluid that has made its way into the lymphatic system. GOC:cvs ORCiD:0000-0002-2244-7917 UBERON:curator Thin layer of loose connective tissue which lies beneath the intestinal epithelium. The intestinal lamina propria is less complex then the corresponding mammalian tissue. Ceri 2013-03-07T12:15:28Z zebrafish_anatomy ZFA:0005659 intestinal lamina propria mucosa ZFA:0005659 Thin layer of loose connective tissue which lies beneath the intestinal epithelium. The intestinal lamina propria is less complex then the corresponding mammalian tissue. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050120-6 Multi-tissue structure of the intestine comprising of the intestinal epithelium and the intestinal lamina propria mucosa. Ceri 2013-03-07T12:18:22Z zebrafish_anatomy ZFA:0005660 intestinal mucosa ZFA:0005660 Multi-tissue structure of the intestine comprising of the intestinal epithelium and the intestinal lamina propria mucosa. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050120-6 Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve. Ceri 2013-03-19T02:15:11Z zebrafish_anatomy ZFA:0005661 olfactory bulb glomerulus ZFA:0005661 Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Bilaterally-paired nerve connecting each segment of the spinal cord to the limbs and organs. Ceri 2013-03-19T04:04:36Z zebrafish_anatomy ZFA:0005662 spinal nerve ZFA:0005662 Bilaterally-paired nerve connecting each segment of the spinal cord to the limbs and organs. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1247 ZFIN:ZDB-PUB-961014-814 Dorsal branch of the spinal nerve, coursing dorsally and caudally between the muscle and the vertebrae. It remains in the center of the muscle segment and could be followed to the dorsal aspect of the muscle. MiP primary motoneuron axons extend in this branch. Ceri 2013-03-19T04:08:16Z dorsal nerve zebrafish_anatomy ZFA:0005663 dorsal spinal nerve ZFA:0005663 Dorsal branch of the spinal nerve, coursing dorsally and caudally between the muscle and the vertebrae. It remains in the center of the muscle segment and could be followed to the dorsal aspect of the muscle. MiP primary motoneuron axons extend in this branch. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1247 ZFIN:ZDB-PUB-961014-814 Ventral branch of the spinal nerve that projects toward the lateral surface of the myotome, initially extending parallel to the horizontal myoseptum. RoP primary motoneuron axons extend in this branch. Ceri 2013-03-19T04:09:27Z lateral nerve zebrafish_anatomy ZFA:0005664 lateral spinal nerve ZFA:0005664 Ventral branch of the spinal nerve that projects toward the lateral surface of the myotome, initially extending parallel to the horizontal myoseptum. RoP primary motoneuron axons extend in this branch. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1247 ZFIN:ZDB-PUB-961014-814 Ventral spinal nerve branch that projects to the ventral myotome. The axon of the CaP primary motoneuron extends in this branch. Ceri 2013-03-19T04:11:19Z ventral nerve zebrafish_anatomy ZFA:0005665 ventral spinal nerve ZFA:0005665 Ventral spinal nerve branch that projects to the ventral myotome. The axon of the CaP primary motoneuron extends in this branch. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1247 Ventral spinal nerve sub-branch that runs near the rostral end of the myotome near the vertical myoseptum. Ceri 2013-03-19T04:13:53Z zebrafish_anatomy ZFA:0005666 ventral spinal nerve septal branch ZFA:0005666 Ventral spinal nerve sub-branch that runs near the rostral end of the myotome near the vertical myoseptum. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1247 Ventral spinal nerve sub-branch that projects ventrally in the rostro-caudal center of the myotome. The axon of the CaP primary motoneuron extends in this branch. Ceri 2013-03-19T04:14:46Z zebrafish_anatomy ZFA:0005667 ventral spinal nerve median branch ZFA:0005667 Ventral spinal nerve sub-branch that projects ventrally in the rostro-caudal center of the myotome. The axon of the CaP primary motoneuron extends in this branch. ZFIN:ZDB-PUB-961014-1247 ZFIN:ZDB-PUB-961014-814 Multi-tissue structure part of the olfactory bulb comprised of ciliated and microvillous olfactory sensory neurons projections that form specialized neuropilar regions comprised of olfactory sensor axons and the dendrites of olfactory bulb neurons. Ceri 2013-04-29T11:55:43Z glomerular precursors zebrafish_anatomy ZFA:0005668 olfactory bulb protoglomerulus ZFA:0005668 Multi-tissue structure part of the olfactory bulb comprised of ciliated and microvillous olfactory sensory neurons projections that form specialized neuropilar regions comprised of olfactory sensor axons and the dendrites of olfactory bulb neurons. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120330-2 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. The neurons composing lateral protoglomeruli respond to amino acid stimuli. Ceri 2013-04-29T01:58:36Z lateral protoglomeruli zebrafish_anatomy ZFA:0005669 lateral protoglomerulus ZFA:0005669 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. The neurons composing lateral protoglomeruli respond to amino acid stimuli. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050617-6 ZFIN:ZDB-PUB-980729-35 lateral protoglomeruli Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Ceri 2013-04-29T02:06:50Z zebrafish_anatomy ZFA:0005670 central zone protoglomerulus ZFA:0005670 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Mediates the signals produced in response to bile acids. Ceri 2013-04-29T02:10:49Z zebrafish_anatomy ZFA:0005671 medial protoglomerulus ZFA:0005671 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Mediates the signals produced in response to bile acids. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050617-6 ZFIN:ZDB-PUB-980729-35 Single large glomerulus located in the ventral posterior region of the maturing glomerular layer of the olfactory bulb. Ceri 2013-04-29T02:17:00Z zebrafish_anatomy VPG ZFA:0005672 ventral posterior glomerulus ZFA:0005672 Single large glomerulus located in the ventral posterior region of the maturing glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Central region of the glomerular layer of the olfactory bulb. Ceri 2013-04-29T02:25:20Z zebrafish_anatomy ZFA:0005673 central zone olfactory bulb ZFA:0005673 Central region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Dorsal region of the glomerular layer of the olfactory bulb. Ceri 2013-04-29T02:26:28Z zebrafish_anatomy ZFA:0005674 dorsal zone olfactory bulb ZFA:0005674 Dorsal region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Lateral region of the glomerular layer of the olfactory bulb. The lateral region of the olfactory bulb consisted of morphologically diverse glomeruli and a diffuse aggregate of OSN axons, the lateral plexus. Ceri 2013-04-29T02:27:13Z zebrafish_anatomy ZFA:0005675 lateral zone olfactory bulb ZFA:0005675 Lateral region of the glomerular layer of the olfactory bulb. The lateral region of the olfactory bulb consisted of morphologically diverse glomeruli and a diffuse aggregate of OSN axons, the lateral plexus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Medial region of the glomerular layer of the olfactory bulb. Ceri 2013-04-29T02:28:47Z zebrafish_anatomy ZFA:0005676 medial zone olfactory bulb ZFA:0005676 Medial region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Ventral region of the glomerular layer of the olfactory bulb. Ceri 2013-04-29T02:29:39Z zebrafish_anatomy ZFA:0005677 ventral zone olfactory bulb ZFA:0005677 Ventral region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Lateral region of the dorsal zone of the olfactory bulb. Glomeruli in this zone are tightly clustered in both male and female fish. Ceri 2013-05-06T04:46:27Z zebrafish_anatomy ZFA:0005678 dorsolateral zone olfactory bulb ZFA:0005678 Lateral region of the dorsal zone of the olfactory bulb. Glomeruli in this zone are tightly clustered in both male and female fish. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050523-2 ZFIN:ZDB-PUB-101222-42 ZFIN:ZDB-PUB-120516-14 Medial portion of the ventral region of the glomerular layer of the olfactory bulb. Ceri 2013-05-07T09:59:45Z zebrafish_anatomy ZFA:0005679 ventromedial zone olfactory bulb ZFA:0005679 Medial portion of the ventral region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Anterior portion of the ventral region of the glomerular layer of the olfactory bulb. In the ventroanterior zone there are typically seven small glomeruli located 11-20 micrometers beneath the superficial axon bundles The ganglion differed conspicuously in sizes, shapes, and distribution, and were not individually identifiable. Ceri 2013-05-07T10:03:15Z zebrafish_anatomy vaGx ZFA:0005680 ventroanterior zone of olfactory bulb ZFA:0005680 Anterior portion of the ventral region of the glomerular layer of the olfactory bulb. In the ventroanterior zone there are typically seven small glomeruli located 11-20 micrometers beneath the superficial axon bundles The ganglion differed conspicuously in sizes, shapes, and distribution, and were not individually identifiable. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Posterior portion of the ventral region of the glomerular layer of the olfactory bulb. Ceri 2013-05-07T10:22:38Z zebrafish_anatomy ZFA:0005681 ventroposterior zone olfactory bulb ZFA:0005681 Posterior portion of the ventral region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Dorsal part of the medial region of the glomerular layer of the olfactory bulb. Ceri 2013-05-07T01:37:59Z zebrafish_anatomy ZFA:0005682 mediodorsal zone of the olfactory bulb ZFA:0005682 Dorsal part of the medial region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 Anterior portion of the medial region of the glomerular layer of the olfactory bulb. Ceri 2013-05-07T01:39:48Z medial anterior zone olfactory bulb zebrafish_anatomy ZFA:0005683 anteromedial zone olfactory bulb ZFA:0005683 Anterior portion of the medial region of the glomerular layer of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 Glomerulus located between ventromedial and medial olfactory bulb surfaces. The mpG is generally elongated and innervated by a single thick axon. Ceri 2013-05-07T01:48:45Z mpG zebrafish_anatomy ZFA:0005684 posteromedial glomerulus ZFA:0005684 Glomerulus located between ventromedial and medial olfactory bulb surfaces. The mpG is generally elongated and innervated by a single thick axon. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050523-2 ZFIN:ZDB-PUB-961014-62 Glomerulus located in the dorsal zone of the olfactory bulb. It is located in a stereotypic position near the posterior edge of the dorsal glomerular zone and stains with anti-calretinin. Ceri 2013-05-21T02:25:26Z dorsal glomerulus 1 zebrafish_anatomy ZFA:0005685 dG1 ZFA:0005685 Glomerulus located in the dorsal zone of the olfactory bulb. It is located in a stereotypic position near the posterior edge of the dorsal glomerular zone and stains with anti-calretinin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the dorsolateral zone of the olfactory bulb. Dorsalmost of glomeruli located along the caudal edge of the olfactory bulb. Ceri 2013-05-21T02:34:12Z dorsolateral glomerulus 1 zebrafish_anatomy ZFA:0005686 dlG1 ZFA:0005686 Glomerulus located in the dorsolateral zone of the olfactory bulb. Dorsalmost of glomeruli located along the caudal edge of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG1 and located along the caudal edge of the olfactory bulb. Ceri 2013-05-21T02:38:24Z dorsolateral glomerulus 2 zebrafish_anatomy ZFA:0005687 dlG2 ZFA:0005687 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG1 and located along the caudal edge of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG2 and located along the caudal edge of the olfactory bulb. Ceri 2013-05-21T02:40:59Z dorsolateral glomerulus 3 zebrafish_anatomy ZFA:0005688 dlG3 ZFA:0005688 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG2 and located along the caudal edge of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG3 and located along the caudal edge of the olfactory bulb. Ceri 2013-05-21T02:42:35Z zebrafish_anatomy dorsolateral glomerulus 4 ZFA:0005689 dlG4 ZFA:0005689 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG3 and located along the caudal edge of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG4, and located along the caudal edge of the olfactory bulb. Ceri 2013-05-21T02:45:36Z zebrafish_anatomy dorsolateral glomerulus 5 ZFA:0005690 dlG5 ZFA:0005690 Glomerulus located in the dorsolateral zone of the olfactory bulb. Ventral to dlG4, and located along the caudal edge of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Anteriormost of the triplet of glomeruli strongly expressing calretinin. Ceri 2013-05-21T03:10:31Z ventral triplet glomerulus 1 ventromedial glomerulus 1 zebrafish_anatomy ZFA:0005691 vmG1 ZFA:0005691 Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Anteriormost of the triplet of glomeruli strongly expressing calretinin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posterior to vmG1 in the triplet of glomeruli strongly expressing calretinin. Ceri 2013-05-21T03:17:25Z ventral triplet glomerulus 2 ventromedial glomerulus 2 zebrafish_anatomy ZFA:0005692 vmG2 ZFA:0005692 Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posterior to vmG1 in the triplet of glomeruli strongly expressing calretinin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posteriormost glomerulus in the triplet of glomeruli strongly expressing calretinin. Ceri 2013-05-21T03:19:23Z ventral triplet glomerulus 3 ventromedial glomerulus 3 zebrafish_anatomy ZFA:0005693 vmG3 ZFA:0005693 Glomerulus located in the ventromedial zone of the olfactory bulb. Stains strongly with anti-calretinin. Posteriormost glomerulus in the triplet of glomeruli strongly expressing calretinin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to the triplet of ventromedial glomeruli strongly expressing calretinin. Ceri 2013-05-21T03:24:43Z ventromedial glomerulus 4 zebrafish_anatomy ZFA:0005694 vmG4 ZFA:0005694 Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to the triplet of ventromedial glomeruli strongly expressing calretinin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4. Ceri 2013-05-21T03:26:20Z ventromedial glomerulus 5 zebrafish_anatomy ZFA:0005695 vmG5 ZFA:0005695 Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4 adjacent to vmG5. Ceri 2013-05-21T03:27:26Z ventromedial glomerulus 6 zebrafish_anatomy ZFA:0005696 vmG6 ZFA:0005696 Glomerulus located in the ventromedial zone of the olfactory bulb. Posterior to vmG4 adjacent to vmG5. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the ventromedial zone of the olfactory bulb. vmG7 is located anteriorly to vmG1-3 and vmG4-6. Ceri 2013-05-21T03:31:32Z ventromedial glomerulus 7 zebrafish_anatomy ZFA:0005697 vmG7 ZFA:0005697 Glomerulus located in the ventromedial zone of the olfactory bulb. vmG7 is located anteriorly to vmG1-3 and vmG4-6. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Group of glomerulus located in the ventromedial zone of the olfactory bulb The vmGx group, is located 10-50 micrometers from the ventral surface of the olfactory bulb. And were located anywhere between the posteroventral and anteroventral regions of the olfactory bulb. It was not possible to unambiguously identify the vmGx because they displayed varying distributions and numbers in the olfactory bulbs of different animals. Ceri 2013-05-21T03:34:17Z ventromedial glomerular group x zebrafish_anatomy ZFA:0005698 vmGx ZFA:0005698 Group of glomerulus located in the ventromedial zone of the olfactory bulb The vmGx group, is located 10-50 micrometers from the ventral surface of the olfactory bulb. And were located anywhere between the posteroventral and anteroventral regions of the olfactory bulb. It was not possible to unambiguously identify the vmGx because they displayed varying distributions and numbers in the olfactory bulbs of different animals. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Group of glomerulus located in the ventromedial zone of the olfactory bulb. A cluster of comparatively small glomeruli located near the midline between the two olfactory bulbs The glomeruli in the vmGy were among the smallest glomeruli in the olfactory bulb. Ceri 2013-05-21T03:37:11Z ventromedial glomerular group y zebrafish_anatomy ZFA:0005699 vmGy ZFA:0005699 Group of glomerulus located in the ventromedial zone of the olfactory bulb. A cluster of comparatively small glomeruli located near the midline between the two olfactory bulbs The glomeruli in the vmGy were among the smallest glomeruli in the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 One of two large glomeruli located in the medial side of the ventroposterior zone olfactory bulb. Ceri 2013-05-21T03:46:05Z ventroposterior glomerulus 1 zebrafish_anatomy ZFA:0005700 vpG1 ZFA:0005700 One of two large glomeruli located in the medial side of the ventroposterior zone olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 One of two large glomeruli located in the lateral side of the ventroposterior zone olfactory bulb. Ceri 2013-05-21T03:47:52Z ventroposterior glomerulus 2 zebrafish_anatomy ZFA:0005701 vpG2 ZFA:0005701 One of two large glomeruli located in the lateral side of the ventroposterior zone olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the lateral zone of the olfactory bulb. LG1 is surrounded by a diffuse aggregate of OSN axons. Ceri 2013-05-21T04:11:01Z glomerulus 1 of the lateral chain lateral glomerulus 1 zebrafish_anatomy ZFA:0005702 lg1 ZFA:0005702 Glomerulus located in the lateral zone of the olfactory bulb. LG1 is surrounded by a diffuse aggregate of OSN axons. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the lateral zone of the olfactory bulb. Located on the caudal edge of the lateral glomerulus. Ceri 2013-05-21T04:15:43Z glomerulus 2 of the lateral chain lateral glomerulus 2 lcG2 zebrafish_anatomy ZFA:0005703 lG2 ZFA:0005703 Glomerulus located in the lateral zone of the olfactory bulb. Located on the caudal edge of the lateral glomerulus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the dorsoanterior region of the lateral zone of the olfactory bulb. Expresses calretinin. Ceri 2013-05-21T04:18:03Z glomerulus 3 of the lateral chain lateral glomerulus 3 lcG3 zebrafish_anatomy ZFA:0005704 lG3 ZFA:0005704 Glomerulus located in the dorsoanterior region of the lateral zone of the olfactory bulb. Expresses calretinin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the lateral zone of the olfactory bulb. Ceri 2013-05-22T11:07:13Z glomerulus 4 of the lateral chain lateral glomerulus 4 zebrafish_anatomy lcG4 ZFA:0005705 lG4 ZFA:0005705 Glomerulus located in the lateral zone of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 Glomerulus located in the lateral zone of the olfactory bulb. LG5 is surrounded by a diffuse aggregate of OSN axons. Ceri 2013-05-22T11:11:41Z glomerulus 5 of the lateral chain lcG5 zebrafish_anatomy lateral glomerulus 5 ZFA:0005706 lg5 ZFA:0005706 Glomerulus located in the lateral zone of the olfactory bulb. LG5 is surrounded by a diffuse aggregate of OSN axons. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Group of glomerulus located in the lateral region of the olfactory bulb. The glomeruli that compose lGx are smaller than the lG1-6 and varied in shape, sizes, and locations between olfactory bulbs of the same and different animals. The lGx were located either along the ventral edge of the lateral group or below the lateral olfactory bulb surface. Ceri 2013-05-22T11:16:21Z zebrafish_anatomy ZFA:0005707 lGx ZFA:0005707 Group of glomerulus located in the lateral region of the olfactory bulb. The glomeruli that compose lGx are smaller than the lG1-6 and varied in shape, sizes, and locations between olfactory bulbs of the same and different animals. The lGx were located either along the ventral edge of the lateral group or below the lateral olfactory bulb surface. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the lateral zone of the olfactory bulb. LG6 is located on the ventroposterior edge of the lateral group. Ceri 2013-05-22T11:19:31Z lateral glomerulus 6 lvpG zebrafish_anatomy ZFA:0005708 lg6 ZFA:0005708 Glomerulus located in the lateral zone of the olfactory bulb. LG6 is located on the ventroposterior edge of the lateral group. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the mediodorsal zone of the olfactory bulb. It lies caudal to mdG5 and mdG6 and rostral of mdG3. Ceri 2013-05-22T11:49:49Z mdpG1 mediodorsal glomerulus 1 mediodorsal posterior glomerulus 1 zebrafish_anatomy ZFA:0005709 mdG1 ZFA:0005709 Glomerulus located in the mediodorsal zone of the olfactory bulb. It lies caudal to mdG5 and mdG6 and rostral of mdG3. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus expresses a S100 protein. It is the most posterior-caudal of the mediodorsal glomeruli. Ceri 2013-05-22T11:53:33Z mdpG2 mediodorsal glomerulus 2 mediodorsal posterior glomerulus 2 zebrafish_anatomy ZFA:0005710 mdG2 ZFA:0005710 Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus expresses a S100 protein. It is the most posterior-caudal of the mediodorsal glomeruli. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the mediodorsal zone of the olfactory bulb. Glomerulus that lies ventral to mdG2 on the caudal edge of the mediodorsal glomeruli. Ceri 2013-05-22T11:54:46Z mediodorsal glomerulus 3 zebrafish_anatomy ZFA:0005711 mdG3 ZFA:0005711 Glomerulus located in the mediodorsal zone of the olfactory bulb. Glomerulus that lies ventral to mdG2 on the caudal edge of the mediodorsal glomeruli. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the mediodorsal zone of the olfactory bulb. Positioned between mdG2 and mdG5 on the dorsal edge of the medial dorsal glomerular cluster. Ceri 2013-05-22T11:56:36Z mediodorsal glomerulus 4 zebrafish_anatomy ZFA:0005712 mdG4 ZFA:0005712 Glomerulus located in the mediodorsal zone of the olfactory bulb. Positioned between mdG2 and mdG5 on the dorsal edge of the medial dorsal glomerular cluster. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the mediodorsal zone of the olfactory bulb. . This glomerulus expresses a protein that cross reacts with antibodies raised against GNAO1. It is the dorsal to mdG6 on the rostral edge of the mediodorsal cluster. Ceri 2013-05-22T11:57:20Z mediodorsal glomerulus 5 zebrafish_anatomy ZFA:0005713 mdG5 ZFA:0005713 Glomerulus located in the mediodorsal zone of the olfactory bulb. . This glomerulus expresses a protein that cross reacts with antibodies raised against GNAO1. It is the dorsal to mdG6 on the rostral edge of the mediodorsal cluster. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus is the most ventral glomerulus in the mediodorsal cluster. Ceri 2013-05-22T11:58:01Z mediodorsal glomerulus 6 zebrafish_anatomy ZFA:0005714 mdG6 ZFA:0005714 Glomerulus located in the mediodorsal zone of the olfactory bulb. This glomerulus is the most ventral glomerulus in the mediodorsal cluster. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Glomerulus located in the anteromedial zone of the olfactory bulb. Ceri 2013-05-22T12:02:52Z medial anterior glomerulus 1 zebrafish_anatomy maG ZFA:0005715 maG1 ZFA:0005715 Glomerulus located in the anteromedial zone of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 Group of small glomeruli located in the anteromedial zone of the olfactory bulb. The arrangements of glomeruli maGx varies between animals and they can't be identified as individual units. Ceri 2013-05-22T12:04:40Z zebrafish_anatomy medial anterior glomeruli ZFA:0005716 maGx ZFA:0005716 Group of small glomeruli located in the anteromedial zone of the olfactory bulb. The arrangements of glomeruli maGx varies between animals and they can't be identified as individual units. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120516-14 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsolateral protoglomerulus located in the lateral region of the olfactory bulb. Ceri 2013-05-22T03:52:20Z zebrafish_anatomy LG1 ZFA:0005717 lateral protoglomerulus 1 ZFA:0005717 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsolateral protoglomerulus located in the lateral region of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventromedial protoglomerulus located in the lateral region of the olfactory bulb. Ceri 2013-05-22T04:06:52Z zebrafish_anatomy LG2 ZFA:0005718 lateral protoglomerulus 2 ZFA:0005718 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventromedial protoglomerulus located in the lateral region of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsomedial protoglomerulus located in the lateral region of the olfactory bulb. Ceri 2013-05-22T04:08:18Z zebrafish_anatomy LG3 ZFA:0005719 lateral protoglomerulus 3 ZFA:0005719 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Dorsomedial protoglomerulus located in the lateral region of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventrolateral protoglomerulus located in the lateral region of the olfactory bulb. Ceri 2013-05-22T04:08:37Z zebrafish_anatomy LG4 ZFA:0005720 lateral protoglomerulus 4 ZFA:0005720 Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. Ventrolateral protoglomerulus located in the lateral region of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most lateral protoglomerulus in the central zone. Ceri 2013-05-22T05:13:36Z CZ1 zebrafish_anatomy ZFA:0005721 central zone protoglomerulus 1 ZFA:0005721 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most lateral protoglomerulus in the central zone. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 1. Ceri 2013-05-22T05:20:35Z CZ2 zebrafish_anatomy ZFA:0005722 central zone protoglomerulus 2 ZFA:0005722 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 1. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 2. Ceri 2013-05-22T05:21:01Z CZ3 zebrafish_anatomy ZFA:0005723 central zone protoglomerulus 3 ZFA:0005723 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 2. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 3. Ceri 2013-05-22T05:35:43Z CZ4 zebrafish_anatomy ZFA:0005724 central zone protoglomerulus 4 ZFA:0005724 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Located medially to protoglomerulus 3. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most medial protoglomerulus in the central zone. Ceri 2013-05-22T05:36:02Z CZ5 zebrafish_anatomy ZFA:0005725 central zone protoglomerulus 5 ZFA:0005725 Protoglomeruli in the central zone of the glomerular layer of the olfactory bulb. The central zone protoglomeruli have somewhat indistinct boundaries. Most medial protoglomerulus in the central zone. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most posterio-lateral of the medial protoglomeruli. Ceri 2013-05-22T05:39:34Z zebrafish_anatomy MG1 ZFA:0005726 medial protoglomerulus 1 ZFA:0005726 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most posterio-lateral of the medial protoglomeruli. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050617-6 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most dorsally located medial protoglomerulus and medial to protoglomerulus 1. Ceri 2013-05-22T05:42:18Z zebrafish_anatomy MG2 ZFA:0005727 medial protoglomerulus 2 ZFA:0005727 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most dorsally located medial protoglomerulus and medial to protoglomerulus 1. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050617-6 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Located between medial glomerulus 2 and medial glomerulus 4 along dorsal-ventral axis of the medial region of the olfactory bulb. Ceri 2013-05-22T05:42:38Z zebrafish_anatomy MG3 ZFA:0005728 medial protoglomerulus 3 ZFA:0005728 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Located between medial glomerulus 2 and medial glomerulus 4 along dorsal-ventral axis of the medial region of the olfactory bulb. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050617-6 ZFIN:ZDB-PUB-980729-35 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most ventral of the medial protoglomeruli. Ceri 2013-05-22T05:42:57Z zebrafish_anatomy MG4 ZFA:0005729 medial protoglomerulus 4 ZFA:0005729 Protoglomeruli in the medial region of the glomerular layer of the olfactory bulb. Most ventral of the medial protoglomeruli. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050617-6 ZFIN:ZDB-PUB-980729-35 Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs. Ceri 2013-06-20T02:04:57Z CL:0015000 cranial motoneuron zebrafish_anatomy ZFA:0005730 cranial motor neuron ZFA:0005730 Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs. GOC:cvs ORCiD:0000-0002-2244-7917 Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches. Ceri 2013-06-20T02:06:26Z CL:0005023 branchi motor neuron special visceral motor neuron zebrafish_anatomy ZFA:0005731 branchiomotor neuron ZFA:0005731 Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches. GOC:cvs ORCiD:0000-0002-2244-7917 PMID:14699587 Cranial motor neurons are found in the hindbrain, and innervate parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems. Ceri 2013-06-20T02:08:10Z CL:0005025 general visceral motor neuron zebrafish_anatomy ZFA:0005732 visceromotor neuron ZFA:0005732 Cranial motor neurons are found in the hindbrain, and innervate parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems. GOC:cvs ORCiD:0000-0002-2244-7917 PMID:14699587 Cranial motor neurons found in the midbrain and hindbrain that innervates muscles that control eye and tongue. Ceri 2013-06-20T02:09:35Z CL:0005024 zebrafish_anatomy ZFA:0005733 somatomotor neuron ZFA:0005733 Cranial motor neurons found in the midbrain and hindbrain that innervates muscles that control eye and tongue. GOC:cvs ORCiD:0000-0002-2244-7917 PMID:14699587 A system of osteocytes connected through canals within the vertebra. Osteocytes extend processes through canals within ossified bone. The lacunocanalicular system is poorly developed in zebrafish with most osteocytes having one or two cytoplasmic processes. Ceri 2013-07-08T11:48:50Z zebrafish_anatomy ZFA:0005734 lacunocanalicular system ZFA:0005734 A system of osteocytes connected through canals within the vertebra. Osteocytes extend processes through canals within ossified bone. The lacunocanalicular system is poorly developed in zebrafish with most osteocytes having one or two cytoplasmic processes. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-22629-14 Anatomical space, part of the lacunocanalicular system that connects lacuna within bone tissue allowing osteocyte projections to connect. Ceri 2013-07-08T12:10:17Z zebrafish_anatomy ZFA:0005735 lacunocanalicular canal ZFA:0005735 Anatomical space, part of the lacunocanalicular system that connects lacuna within bone tissue allowing osteocyte projections to connect. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-11518-14 Anatomical space a small cavity, in the matrix of bone tissue. Part of the lacunocanalicular system. Ceri 2013-07-08T12:19:22Z zebrafish_anatomy ZFA:0005736 lacuna ZFA:0005736 Anatomical space a small cavity, in the matrix of bone tissue. Part of the lacunocanalicular system. GOC:cvs ORCiD:0000-0002-2244-7917 Multicellular structure composed of endodermal cells that forms a continuous rod along the anterior-posterior axis of the embryo in contact with the YSL. This rod will give rise to the endodermal components of the alimentary canal and its connected organs: liver, gall bladder pancreas and swim bladder. Does not have part pharyngeal endoderm. Ceri 2013-07-23T03:03:23Z zebrafish_anatomy endodermal rod intestinal anlage ZFA:0005737 intestinal rod ZFA:0005737 Multicellular structure composed of endodermal cells that forms a continuous rod along the anterior-posterior axis of the embryo in contact with the YSL. This rod will give rise to the endodermal components of the alimentary canal and its connected organs: liver, gall bladder pancreas and swim bladder. Does not have part pharyngeal endoderm. ZFIN:ZDB-PUB-030115-26 endodermal rod ZFIN:ZDB-PUB-030115-26 intestinal anlage ZFIN:ZDB-PUB-050120-6. Portion of the intestinal rod that loops to left between 26-30hpf and gives rise to the intestinal bulb and liver and anterior pancreatic primordium. The endoderm at this stage is a compact mass of cells with little to no polarization. Ceri 2013-07-23T03:06:11Z zebrafish_anatomy ZFA:0005738 intestinal bulb primordium ZFA:0005738 Portion of the intestinal rod that loops to left between 26-30hpf and gives rise to the intestinal bulb and liver and anterior pancreatic primordium. The endoderm at this stage is a compact mass of cells with little to no polarization. ZFIN:ZDB-PUB-031103-19 A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, has a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules. Ceri 2013-07-29T10:13:45Z CL:0002064 zebrafish_anatomy ZFA:0005739 pancreatic acinar cell ZFA:0005739 A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, has a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules. GOC:tfm ZFIN:ZDB-PUB-050623-3 A cuboidal epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types. Ceri 2013-07-29T10:16:32Z CL:0002080 CAC zebrafish_anatomy ZFA:0005740 pancreatic centroacinar cell ZFA:0005740 A cuboidal epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types. GOC:tfm ZFIN:ZDB-PUB-050623-3 CAC ZFIN:ZDB-PUB-050623-3 Portion of exocrine pancreas that is comprised of polarized cells containing apical zymogen granules that store digestive enzymes such as trypsin and chymotrypsin and abundant rough endoplasmic reticulum and mitochondria. Ceri 2013-07-29T10:42:33Z exocrine glands pancreas pancreatic acini zebrafish_anatomy ZFA:0005741 pancreatic acinar gland ZFA:0005741 Portion of exocrine pancreas that is comprised of polarized cells containing apical zymogen granules that store digestive enzymes such as trypsin and chymotrypsin and abundant rough endoplasmic reticulum and mitochondria. ZFIN:ZDB-PUB-050623-3 ZFIN:ZDB-PUB-070310-3 Polypeptide producing cell located in the islets of the pancreas. Ceri 2013-07-29T10:59:29Z CL:0002275 PP cell of pancreatic islet PP-cell of pancreatic islet pancreatic polypeptide-secreting cell zebrafish_anatomy pancreatic F cells ZFA:0005742 pancreatic PP cell ZFA:0005742 Polypeptide producing cell located in the islets of the pancreas. GOC:tfm A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin. Ceri 2013-07-29T11:03:15Z CL:0000173 D-cell of pancreatic islet delta cell of islet pancreatic delta cell somatostatin-secreting pancreatic cell zebrafish_anatomy ZFA:0005743 pancreatic D cell ZFA:0005743 A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin. CL:tfm Cells that form an epithelial-like sheath around the vacuolated inner notochord cells. Outer cells secrete a thick extracellular perinotochordal basement membrane. Ceri 2013-07-30T04:09:49Z CL:0007007 zebrafish_anatomy notochord sheath cell ZFA:0005744 notochord outer sheath cell ZFA:0005744 Cells that form an epithelial-like sheath around the vacuolated inner notochord cells. Outer cells secrete a thick extracellular perinotochordal basement membrane. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-130322-23 A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism. Ceri 2013-07-30T04:14:44Z CL:0000293 zebrafish_anatomy ZFA:0005745 structural cell ZFA:0005745 A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism. TAIR:sr Structural cell of notochord that contain one large fluid-filled intracellular vacuole that occupies most of the cell volume. Ceri 2013-07-30T04:15:56Z chordocytes zebrafish_anatomy ZFA:0005746 notochord inner cell ZFA:0005746 Structural cell of notochord that contain one large fluid-filled intracellular vacuole that occupies most of the cell volume. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-130322-23 Lymph vessels that are located on either side of the PCV in the posterior region of the intestine. Ceri 2013-07-31T10:44:16Z SIL zebrafish_anatomy ZFA:0005747 supraintestinal lymphatic vessel ZFA:0005747 Lymph vessels that are located on either side of the PCV in the posterior region of the intestine. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Digestive duct within the pancreas. The pancreatic duct carries inactive digestive enzymes to the intestine. Ceri 2013-08-01T02:17:49Z zebrafish_anatomy ZFA:0005748 intrapancreatic duct ZFA:0005748 Digestive duct within the pancreas. The pancreatic duct carries inactive digestive enzymes to the intestine. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050623-3 ZFIN:ZDB-PUB-101201-32 The portion of the intrapancreatic duct leading from the pancreatic acinar gland to the intralobular duct. Ceri 2013-08-01T02:44:27Z zebrafish_anatomy ZFA:0005749 intercalated duct pancreas ZFA:0005749 The portion of the intrapancreatic duct leading from the pancreatic acinar gland to the intralobular duct. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050623-3 Intrapancreatic duct within a pancreatic lobe that connects all the intercalated duct with an interlobular duct. The intralobular duct is lined with cuboidal cells. Ceri 2013-08-01T02:50:38Z zebrafish_anatomy ZFA:0005750 pancreatic intralobular duct ZFA:0005750 Intrapancreatic duct within a pancreatic lobe that connects all the intercalated duct with an interlobular duct. The intralobular duct is lined with cuboidal cells. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050623-3 Intrapancreatic duct that connects the intralobular duct to the main pancreatic duct. Ceri 2013-08-01T02:53:52Z zebrafish_anatomy ZFA:0005751 pancreatic interlobular duct ZFA:0005751 Intrapancreatic duct that connects the intralobular duct to the main pancreatic duct. GOC:cvs ORCiD:0000-0002-2244-7917 Intrapancreatic duct that connects to the interlobular ducts and drains into the extrapancreatic duct. The main duct may not be present in all larva and may develop in a segmented fashion. Ceri 2013-08-01T02:55:07Z zebrafish_anatomy ZFA:0005752 main intrapancreatic duct ZFA:0005752 Intrapancreatic duct that connects to the interlobular ducts and drains into the extrapancreatic duct. The main duct may not be present in all larva and may develop in a segmented fashion. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050623-3 ZFIN:ZDB-PUB-070310-3 Cluster of acinar glands surrounding an intralobular duct. Ceri 2013-08-01T03:16:34Z exocrine lobule zebrafish_anatomy ZFA:0005753 Lobules are composed of multiple acini so are only apparent starting ~72hpf. Before 72hpf consider annotating to acinar gland. pancreatic lobule ZFA:0005753 Cluster of acinar glands surrounding an intralobular duct. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050623-3 exocrine lobule ZFIN:ZDB-PUB-050623-3 The primary islet is the first islet to develop. Ceri 2013-08-01T04:05:06Z principal islet zebrafish_anatomy ZFA:0005754 primary islet ZFA:0005754 The primary islet is the first islet to develop. GOC:cvs ORCiD:0000-0002-2244-7917 Portion of tissue composed of a group of cells in the pancreas producing insulin, glucagon and somatostatin. Part of the endocrine pancreas. Ceri 2013-08-01T04:10:28Z zebrafish_anatomy ZFA:0005755 islet ZFA:0005755 Portion of tissue composed of a group of cells in the pancreas producing insulin, glucagon and somatostatin. Part of the endocrine pancreas. GOC:cvs ORCiD:0000-0002-2244-7917 Islets that develop after the primary islet. The secondary islets usually form around 7 dpf but can be induced to form as early as 5 dpf. Ceri 2013-08-01T04:10:55Z zebrafish_anatomy ZFA:0005756 Start stage known to be after 3dpf. secondary islet ZFA:0005756 Islets that develop after the primary islet. The secondary islets usually form around 7 dpf but can be induced to form as early as 5 dpf. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-130710-45 ZFIN:ZDB-PUB-140817-2 Portion of tissue composed of the signal-generating cells within the zona limitans intrathalamica. Ceri 2013-08-02T03:20:09Z MDO mid-diencephalic organizer zebrafish_anatomy ZFA:0005757 mid diencephalic organizer ZFA:0005757 Portion of tissue composed of the signal-generating cells within the zona limitans intrathalamica. GOC:DF GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-100621-4 ZFIN:ZDB-PUB-120105-73 Adipose tissue interspersed within the pancreatic acini. Ceri 2013-09-23T10:03:51Z zebrafish_anatomy ZFA:0005758 No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. pancreatic fat ZFA:0005758 Adipose tissue interspersed within the pancreatic acini. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101011-51 Adipose tissue on the surface of the organs within the pleuroperitoneal cavity. Visceral adipocytes were observed posterior to the swim bladder and lining the visceral cavity. Ceri 2013-09-23T10:23:07Z zebrafish_anatomy visceral fat deposit ZFA:0005759 No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. visceral fat ZFA:0005759 Adipose tissue on the surface of the organs within the pleuroperitoneal cavity. Visceral adipocytes were observed posterior to the swim bladder and lining the visceral cavity. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101011-51 Adipose tissue in the cranium. Cranial adipocytes are located within the ventral wall of the cranium, situated between the brain and the esophagus. Ceri 2013-09-23T10:26:44Z zebrafish_anatomy ZFA:0005760 No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. cranial fat ZFA:0005760 Adipose tissue in the cranium. Cranial adipocytes are located within the ventral wall of the cranium, situated between the brain and the esophagus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101011-51 Adipose tissue surrounding the eye. Ceri 2013-09-23T10:59:00Z zebrafish_anatomy ZFA:0005761 No evidence of septa surrounding fat has been presented so is a fat accumulation or deposit not a fat pad. periorbital fat ZFA:0005761 Adipose tissue surrounding the eye. GOC:cvs ORCiD:0000-0002-2244-7917 Adipose tissue between muscle and integument. Ceri 2013-09-23T11:20:54Z zebrafish_anatomy ZFA:0005762 subcutaneous fat ZFA:0005762 Adipose tissue between muscle and integument. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111012-7 Adipose tissue surrounding the esophagus. Ceri 2013-09-23T11:32:46Z zebrafish_anatomy ZFA:0005763 esophageal fat ZFA:0005763 Adipose tissue surrounding the esophagus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101011-51 Adipose tissue deposited along the mandible. Ceri 2013-09-23T11:33:07Z jaw fat deposit zebrafish_anatomy ZFA:0005764 mandibular fat ZFA:0005764 Adipose tissue deposited along the mandible. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101011-51 Adipose tissue surrounding the heart. Ceri 2013-09-23T11:41:21Z pericardial fat deposit zebrafish_anatomy ZFA:0005765 pericardial fat ZFA:0005765 Adipose tissue surrounding the heart. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090417-9 Adipose tissue that forms at the base of the pectoral fin. Ceri 2013-09-23T11:42:40Z pectoral fin plate deposit zebrafish_anatomy ZFA:0005766 pectoral fin plate fat ZFA:0005766 Adipose tissue that forms at the base of the pectoral fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090417-9 Subcutaneous adipose tissue deposit at the base of the caudal fin. Ceri 2013-09-23T12:46:21Z tail fin fat zebrafish_anatomy ZFA:0005767 caudal fin fat ZFA:0005767 Subcutaneous adipose tissue deposit at the base of the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-101011-51 Sensory neuron that extends a single axon shaft along the lateral white matter of the hindbrain and spinal cord. Numerous medially projecting branches are later formed and innervate a series of target nuclei along the anteroposterior axis of the hindbrain and spinal cord. The highly branched axons innervate the integument of the head. There are several subtypes with different afferent branching morphologies. Ceri 2013-09-30T03:31:51Z zebrafish_anatomy ZFA:0005768 trigeminal sensory neuron ZFA:0005768 Sensory neuron that extends a single axon shaft along the lateral white matter of the hindbrain and spinal cord. Numerous medially projecting branches are later formed and innervate a series of target nuclei along the anteroposterior axis of the hindbrain and spinal cord. The highly branched axons innervate the integument of the head. There are several subtypes with different afferent branching morphologies. ZFIN:ZDB-PUB-120106-15 A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa. Ceri 2013-10-04T03:51:27Z CL:0000018 zebrafish_anatomy ZFA:0005769 spermatid ZFA:0005769 A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa. CL:editor Specialized olfactory support cell that surrounds crypt olfactory sensory neurons. There are one or two support cells for each crypt neuron. The cytoplasm of crypt neuron olfactory support cells is less electron dense then other support cells. They also bear numerous microvilli at their apical rim. When two supporting cells are present, they interdigitate with each other Mitochondria in crypt supporting cells are larger than those in the common supporting cells. Ceri 2013-11-05T11:05:25Z zebrafish_anatomy ZFA:0005770 crypt neuron olfactory support cell ZFA:0005770 Specialized olfactory support cell that surrounds crypt olfactory sensory neurons. There are one or two support cells for each crypt neuron. The cytoplasm of crypt neuron olfactory support cells is less electron dense then other support cells. They also bear numerous microvilli at their apical rim. When two supporting cells are present, they interdigitate with each other Mitochondria in crypt supporting cells are larger than those in the common supporting cells. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060724-7 Portion of tissue that develops from the cranial neural crest and which cells populate a series of pharyngeal arches from which develops the support skeleton of the jaw and gills. Ceri 2013-11-25T12:11:28Z zebrafish_anatomy ZFA:0005771 ectomesenchyme ZFA:0005771 Portion of tissue that develops from the cranial neural crest and which cells populate a series of pharyngeal arches from which develops the support skeleton of the jaw and gills. ZFIN:ZDB-PUB-110609-14 ZFIN:ZDB-PUB-120517-11 Diploid cell produced by the fusion of sperm cell nucleus and egg cell. Ceri 2013-11-25T01:46:49Z CL:00000365 zygote zebrafish_anatomy ZFA:0005772 fertilized egg ZFA:0005772 Diploid cell produced by the fusion of sperm cell nucleus and egg cell. GOC:tjm An endothelial progenitor cell that participates in angiogenesis during development. Ceri 2013-12-02T02:57:49Z CL:0002546 zebrafish_anatomy ZFA:0005773 embryonic blood vessel endothelial progenitor cell ZFA:0005773 An endothelial progenitor cell that participates in angiogenesis during development. GOC:tjm The external layer of the atrium bounding the atrial myocardium. Ceri 2013-11-26T04:32:55Z zebrafish_anatomy ZFA:0005774 atrial epicardium ZFA:0005774 The external layer of the atrium bounding the atrial myocardium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-100112-31 Neuron that is part of the enteric nervous system. Ceri 2014-03-06T12:36:50Z CL:0007011 zebrafish_anatomy ZFA:0005775 enteric neuron ZFA:0005775 Neuron that is part of the enteric nervous system. CL:MAH Parasympathetic neurons are part of the parasympathetic nervous system and the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic. Ceri 2014-03-06T12:39:37Z CL:0011102 zebrafish_anatomy ZFA:0005776 parasympathetic neuron ZFA:0005776 Parasympathetic neurons are part of the parasympathetic nervous system and the cell bodies lie in the brain and sacral region of the spinal cord. The neurons are mainly cholinergic. ISBN:0080923437 Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides. Ceri 2014-03-06T12:42:24Z CL:0011103 zebrafish_anatomy ZFA:0005777 sympathetic neuron ZFA:0005777 Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides. ISBN:0080923437 A neuron that releases hypocretin as a neurotransmitter. Ceri 2014-03-06T01:14:29Z CL:0011109 zebrafish_anatomy orexin secreting neuron ZFA:0005778 hypocretin-secreting neuron ZFA:0005778 A neuron that releases hypocretin as a neurotransmitter. PMID:23848055 Epithelium within the thymus where lymphocytes mature. Cells of the thymic epithelium have cytoplasm that appear devoid of most membrane bound organelles but contain bundles of cytoplasmic filaments, and frequent desmosomes occur between these epithelial cells. There are also secretory epithelial cells that contain a heterogeneous population of electron-dense, cytoplasmic granules and a well developed Golgi complex. Epithelial cysts are present after 3 weeks. Ceri 2014-03-11T03:25:06Z zebrafish_anatomy ZFA:0005779 thymic epithelium ZFA:0005779 Epithelium within the thymus where lymphocytes mature. Cells of the thymic epithelium have cytoplasm that appear devoid of most membrane bound organelles but contain bundles of cytoplasmic filaments, and frequent desmosomes occur between these epithelial cells. There are also secretory epithelial cells that contain a heterogeneous population of electron-dense, cytoplasmic granules and a well developed Golgi complex. Epithelial cysts are present after 3 weeks. ZFIN:ZDB-PUB-990414-60 Epithelium of the thymus primordium composed of cells of immature morphology. The immature thymic epithelium is continuous with the pharyngeal epithelium. The immature thymic epithelium is composed of electron-lucent epithelial cells of irregular or polygonal shape and contain numerous ribosomes, large electron-lucent mitochondria, and rough endoplasmic reticulum. Nascent desmosomes join these primitive epithelial cells together. Ceri 2014-03-11T03:28:25Z zebrafish_anatomy ZFA:0005780 immature thymic epithelium ZFA:0005780 Epithelium of the thymus primordium composed of cells of immature morphology. The immature thymic epithelium is continuous with the pharyngeal epithelium. The immature thymic epithelium is composed of electron-lucent epithelial cells of irregular or polygonal shape and contain numerous ribosomes, large electron-lucent mitochondria, and rough endoplasmic reticulum. Nascent desmosomes join these primitive epithelial cells together. ZFIN:ZDB-PUB-990414-60 Part of the gut where the pronephric tubules come together with the caudal end of the intestine attaching at 4dpf. The oviduct or sperm duct connect later. Ceri 2014-03-12T09:34:37Z zebrafish_anatomy ZFA:0005781 cloaca ZFA:0005781 Part of the gut where the pronephric tubules come together with the caudal end of the intestine attaching at 4dpf. The oviduct or sperm duct connect later. ZFIN:ZDB-PUB-060508-11 The juncture where the intestine empties into the cloaca. Ceri 2014-03-12T09:39:01Z gut opening zebrafish_anatomy ZFA:0005782 intestinal opening ZFA:0005782 The juncture where the intestine empties into the cloaca. GOC:cvs ORCiD:0000-0002-2244-7917 Epithelium lining the cloaca. The epithelium is a simple cuboidal epithelium at Prim-5. Ceri 2014-03-12T10:18:40Z zebrafish_anatomy ZFA:0005783 cloacal epithelium ZFA:0005783 Epithelium lining the cloaca. The epithelium is a simple cuboidal epithelium at Prim-5. ZFIN:ZDB-PUB-000505-17 Muscle cell which has as its direct parts myofilaments organized into sarcomeres. Ceri 2014-03-18T03:14:29Z CL:0000737 zebrafish_anatomy ZFA:0005784 striated muscle cell ZFA:0005784 Muscle cell which has as its direct parts myofilaments organized into sarcomeres. GOC:tfm ISBN:0721662544 Striated muscle of the esophagus. Permits voluntary swallowing. Ceri 2014-03-18T03:37:56Z oesophageal striated muscle (OSM) zebrafish_anatomy ZFA:0005785 esophageal striated muscle ZFA:0005785 Striated muscle of the esophagus. Permits voluntary swallowing. ZFIN:ZDB-PUB-130709-61 oesophageal striated muscle (OSM) ZFIN:ZDB-PUB-130709-61 Wedge-shaped epidermal cell positioned along the apex of the developing fin fold. Each cleft cell retains a wedge-shaped form during fold formation and develops a basal cleft-shaped invagination. Invaginations are aligned in neighboring cleft cells so that these cells cap the distal boundary of the subepidermal space where collagenous extracellular fibres called actinotrichia run anteroposteriorly along the length of the fin fold. Ceri 2014-03-25T09:31:29Z zebrafish_anatomy ZFA:0005786 cleft cell ZFA:0005786 Wedge-shaped epidermal cell positioned along the apex of the developing fin fold. Each cleft cell retains a wedge-shaped form during fold formation and develops a basal cleft-shaped invagination. Invaginations are aligned in neighboring cleft cells so that these cells cap the distal boundary of the subepidermal space where collagenous extracellular fibres called actinotrichia run anteroposteriorly along the length of the fin fold. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-195 Artery that runs along the midline from anterior to posterior regions of the hypothalamus and splits into two capillary branches (hyc). The formation of the artery is initiated at the hypophysis itself and extends anteriorly until it connects with the palatocerebral arteries at day 2.5. Ceri 2014-04-03T10:42:12Z zebrafish_anatomy ZFA:0005787 hypophyseal artery ZFA:0005787 Artery that runs along the midline from anterior to posterior regions of the hypothalamus and splits into two capillary branches (hyc). The formation of the artery is initiated at the hypophysis itself and extends anteriorly until it connects with the palatocerebral arteries at day 2.5. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111027-47 ZFIN:ZDB-PUB-130222-26 Vein thats tarts posterior of the hypophysis and drains the hypophyseal capillaries. It empties into the primary head sinus. Ceri 2014-04-03T10:47:03Z zebrafish_anatomy ZFA:0005788 hypophyseal vein ZFA:0005788 Vein thats tarts posterior of the hypophysis and drains the hypophyseal capillaries. It empties into the primary head sinus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-130222-26 Axon tract originating from the two hemispheres of the neurosecretory preoptic areas converging into the midline and terminating at the ventral part of the hypothalamus at the presumed location of the pituitary. Analogous to the supraopticohypophyseal tract in mammals. Ceri 2014-04-03T11:19:03Z preopticohypophyseal axon tract zebrafish_anatomy ZFA:0005789 preopticohypophyseal tract ZFA:0005789 Axon tract originating from the two hemispheres of the neurosecretory preoptic areas converging into the midline and terminating at the ventral part of the hypothalamus at the presumed location of the pituitary. Analogous to the supraopticohypophyseal tract in mammals. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-111027-47 Pair of capillaries that bilaterally encompass the hypophysis starting at the anterior aspect of the hypophysis (pituitary). Directly posterior to the pituitary, the two capillaries fuse with the hypophyseal vein. Ceri 2014-04-03T11:27:53Z zebrafish_anatomy ZFA:0005790 hypophyseal capillary ZFA:0005790 Pair of capillaries that bilaterally encompass the hypophysis starting at the anterior aspect of the hypophysis (pituitary). Directly posterior to the pituitary, the two capillaries fuse with the hypophyseal vein. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-130222-26 Surface structure that is a keratinized epidermal appendages that is a contact organ and secondary sex organ. Ceri 2014-05-15T03:26:12Z zebrafish_anatomy ZFA:0005791 breeding tubercle ZFA:0005791 Surface structure that is a keratinized epidermal appendages that is a contact organ and secondary sex organ. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 ZFIN:ZDB-PUB-140519-1 Surface structure that is a protrusion from the rostral end of the jaw, supported by the mandibular projection. Ceri 2014-06-04T02:10:53Z lateral projections lower jaw zebrafish_anatomy ZFA:0005792 jaw flap ZFA:0005792 Surface structure that is a protrusion from the rostral end of the jaw, supported by the mandibular projection. ZFIN:ZDB-PUB-140317-29 ZFIN:ZDB-PUB-140519-1 Layer of smooth cells composing the outer layer of the breeding tubercle. Cells in this layer have a high keratin content, lamellar bodies, and condensed chromosomes. This layer is repeatedly shed and regenerated. Ceri 2014-06-04T02:33:07Z zebrafish_anatomy ZFA:0005793 superficial layer of breeding tubercle ZFA:0005793 Layer of smooth cells composing the outer layer of the breeding tubercle. Cells in this layer have a high keratin content, lamellar bodies, and condensed chromosomes. This layer is repeatedly shed and regenerated. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 Cell layer that lies underneath the superficial layer of the breeding tubercle. Characterized by tight junctions within the layer. Ceri 2014-06-04T02:46:01Z zebrafish_anatomy ZFA:0005794 second tier layer of breeding tubercle ZFA:0005794 Cell layer that lies underneath the superficial layer of the breeding tubercle. Characterized by tight junctions within the layer. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 Intermediate layer of the breeding tubercles characterized by cells with loose spinous organization connected to each other via desmosomes, but with wide extracellular spaces in between. Ceri 2014-06-04T02:46:51Z spinous keratinocyte layer zebrafish_anatomy ZFA:0005795 spinous layer of breeding tubercle ZFA:0005795 Intermediate layer of the breeding tubercles characterized by cells with loose spinous organization connected to each other via desmosomes, but with wide extracellular spaces in between. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 Layer of breeding tubercle proximal to basal lamina of the integument. Ceri 2014-06-04T02:48:25Z zebrafish_anatomy ZFA:0005796 basal layer breeding tubercle ZFA:0005796 Layer of breeding tubercle proximal to basal lamina of the integument. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 Breeding tubercles along the surface of the pectoral fin lepidotrichium of males. Ceri 2014-06-04T02:50:54Z zebrafish_anatomy ZFA:0005797 pectoral fin breeding tubercle ZFA:0005797 Breeding tubercles along the surface of the pectoral fin lepidotrichium of males. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 ZFIN:ZDB-PUB-140519-1 Surface structures composed of breeding tubercles arranged in a double row in the medial region on each side of the lower jaw. Ceri 2014-06-04T02:56:48Z zebrafish_anatomy ZFA:0005798 jaw row breeding tubercle ZFA:0005798 Surface structures composed of breeding tubercles arranged in a double row in the medial region on each side of the lower jaw. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 ZFIN:ZDB-PUB-140519-1 Breeding tubercles that cover the surface of the jaw flap. Ceri 2014-06-04T03:32:28Z zebrafish_anatomy ZFA:0005799 jaw flap breeding tubercle ZFA:0005799 Breeding tubercles that cover the surface of the jaw flap. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 ZFIN:ZDB-PUB-140519-1 Portion of organism substance that is located between the cap and second tier layers of the breeding tubercles. The lipid lamellae is composed of lipids. Ceri 2014-06-04T04:00:53Z zebrafish_anatomy ZFA:0005800 extracellular lipid lamellae ZFA:0005800 Portion of organism substance that is located between the cap and second tier layers of the breeding tubercles. The lipid lamellae is composed of lipids. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140317-29 The interrenal vessel (IRV) is the blood vessels supplying the interrenal gland. It is formed by sprouting from the dorsal aorta. The development of the IRV is temporally and spatially correlated with the initiation interrenal gland formation. After traversing the interrenal tissue, the IRV connects to the posterior end segment of the anterior mesenteric artery where two branches of swim bladder arteries branched out. Angiogenic sprout is visible between 34 and 48 hpf with blood flow by 3dpf. Ceri 2014-06-06T01:45:08Z IRV zebrafish_anatomy ZFA:0005801 interrenal vessel ZFA:0005801 The interrenal vessel (IRV) is the blood vessels supplying the interrenal gland. It is formed by sprouting from the dorsal aorta. The development of the IRV is temporally and spatially correlated with the initiation interrenal gland formation. After traversing the interrenal tissue, the IRV connects to the posterior end segment of the anterior mesenteric artery where two branches of swim bladder arteries branched out. Angiogenic sprout is visible between 34 and 48 hpf with blood flow by 3dpf. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120905-5 Sprout from the dorsal aorta that develops into the interrenal vessel. Ceri 2014-06-10T10:26:33Z zebrafish_anatomy ZFA:0005802 interrenal angiogenic sprout ZFA:0005802 Sprout from the dorsal aorta that develops into the interrenal vessel. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120905-5 Gelatinous substance surrounding the kinocila of the neuromast. Ceri 2014-06-24T09:55:56Z zebrafish_anatomy ZFA:0005803 cupula ZFA:0005803 Gelatinous substance surrounding the kinocila of the neuromast. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-768 Efferent neuron where the cell body is located in the hindbrain reticular formation immediately adjacent to the medial longitudinal fascicle at the rostrocaudal level between the MiDl and the CaD and adjacent to the descending Mauthner axon. RELL dendrites are large and extend bilaterally into the ventrolateral neuropil. The ipsilateral dendrite reaches into a single area of the ventrolateral neuropil whereas the contralateral dendrite branches and extends into two different levels of the same rostrocaudal column of the ventrolateral neuropil. The axon emerges from the ventral part of the perikaryon courses a short distance rostrally to the level of the ROLE cells and then turns laterally from the CNS accompanying the root of the posterior lateral line nerve. Ceri 2014-06-24T10:08:34Z RELL neuron zebrafish_anatomy ZFA:0005804 rhombencephalic efferent neurons to the lateral line ZFA:0005804 Efferent neuron where the cell body is located in the hindbrain reticular formation immediately adjacent to the medial longitudinal fascicle at the rostrocaudal level between the MiDl and the CaD and adjacent to the descending Mauthner axon. RELL dendrites are large and extend bilaterally into the ventrolateral neuropil. The ipsilateral dendrite reaches into a single area of the ventrolateral neuropil whereas the contralateral dendrite branches and extends into two different levels of the same rostrocaudal column of the ventrolateral neuropil. The axon emerges from the ventral part of the perikaryon courses a short distance rostrally to the level of the ROLE cells and then turns laterally from the CNS accompanying the root of the posterior lateral line nerve. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-768 Efferent neuron located in the hindbrain. The axon of ROLE cells travels rostrally near the ipsilateral medial longitudinal fascicle to the level of the Mauthner cell where it turns laterally to exit with the eighth nerve. Outside the brain the axon continues ventrally to the base of the saccular macula in the ear then turns caudally to ender the ganglion of the posterior lateral line. A branch of the axon turns ventrally before the main axon enters the LLG. The branch goes ventrally along the wall of the otic capsule. Ceri 2014-06-24T10:42:22Z ROLE neuron zebrafish_anatomy ZFA:0005805 rhombencephalic octavolateral efferent neuron ZFA:0005805 Efferent neuron located in the hindbrain. The axon of ROLE cells travels rostrally near the ipsilateral medial longitudinal fascicle to the level of the Mauthner cell where it turns laterally to exit with the eighth nerve. Outside the brain the axon continues ventrally to the base of the saccular macula in the ear then turns caudally to ender the ganglion of the posterior lateral line. A branch of the axon turns ventrally before the main axon enters the LLG. The branch goes ventrally along the wall of the otic capsule. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-768 Efferent neurons located ventrally in the diencephalon. The dendrites extend into a large area of the diencephalic neuropil rostral, caudal, lateral and ventral to the cell body. The axon courses dorsally and then caudally through the midbrain. As the axon descends through the brain it gives off branches at several levels. One branch usually exits the brain with the posterior lateral line nerve. The axon can be traced into the cervical spinal cord. Ceri 2014-06-24T11:50:49Z DELL neuron zebrafish_anatomy ZFA:0005806 There may be 2 neuron types grouped under this name since there are some instances the axons were seen to exit with the eighth cranial nerve instead of the PLL nerve: ZDB-PUB-961014-768. diencephalic efferent neurons to the lateral line ZFA:0005806 Efferent neurons located ventrally in the diencephalon. The dendrites extend into a large area of the diencephalic neuropil rostral, caudal, lateral and ventral to the cell body. The axon courses dorsally and then caudally through the midbrain. As the axon descends through the brain it gives off branches at several levels. One branch usually exits the brain with the posterior lateral line nerve. The axon can be traced into the cervical spinal cord. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-768 Anatomical space within the intestine where digestion normally occurs. The intestinal lumen begins as an interconnected web of small space at 43 hpf that over time remodels to form a single continuous tube at 68hpf. Lumen maturation proceeds from anterior to posterior along the intestine. Ceri 2014-07-14T01:57:57Z zebrafish_anatomy gut lumen ZFA:0005807 intestine lumen ZFA:0005807 Anatomical space within the intestine where digestion normally occurs. The intestinal lumen begins as an interconnected web of small space at 43 hpf that over time remodels to form a single continuous tube at 68hpf. Lumen maturation proceeds from anterior to posterior along the intestine. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140415-28 Transient cluster of cardiac progenitor cells that develops adjacent to the heart and migrates onto the heart to form the epicardium. Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole. Ceri 2014-07-28T03:01:42Z proepicardial organ proepicardium zebrafish_anatomy ZFA:0005808 Appears after cardiac looping ~30hpf. Derived from mesoderm. proepicardial cluster ZFA:0005808 Transient cluster of cardiac progenitor cells that develops adjacent to the heart and migrates onto the heart to form the epicardium. Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-080218-16 ZFIN:ZDB-PUB-140603-8 proepicardial organ ZFIN:ZDB-PUB-080218-16 proepicardium ZFIN:ZDB-PUB-140603-8 Network of heavily branched muscle in the atrium. Ceri 2014-07-28T04:28:45Z pectinate muscles zebrafish_anatomy ZFA:0005809 pectinate muscle ZFA:0005809 Network of heavily branched muscle in the atrium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-001026-2 pectinate muscles Trabecular layer of the atrial myocardium. Ceri 2014-07-28T04:35:49Z zebrafish_anatomy ZFA:0005810 trabecular layer of the atrium ZFA:0005810 Trabecular layer of the atrial myocardium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-121030-7 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart. Ceri 2014-07-31T10:04:10Z zebrafish_anatomy ZFA:0005811 heart vasculature ZFA:0005811 Is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart. GOC:cvs ORCiD:0000-0002-2244-7917 Artery that carries blood from the efferent branchial artery to the cardiac ventricle. The artery runs along the ventral surface of the bulbus arteriosus. Ceri 2014-07-31T10:05:29Z coronary vessel zebrafish_anatomy ZFA:0005812 coronary artery ZFA:0005812 Artery that carries blood from the efferent branchial artery to the cardiac ventricle. The artery runs along the ventral surface of the bulbus arteriosus. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010912-30 coronary vessel ZFIN:ZDB-PUB-010912-30 Capillaries that innervate the subtrabecular layer of the heart. Ceri 2014-07-31T10:09:35Z zebrafish_anatomy ZFA:0005813 coronary capillary ZFA:0005813 Capillaries that innervate the subtrabecular layer of the heart. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010912-30 Vein that carries blood from the coronary capillaries to the atrial chamber entering the atrium close to the atrioventricular region. Ceri 2014-07-31T10:11:35Z zebrafish_anatomy ZFA:0005814 coronary vein ZFA:0005814 Vein that carries blood from the coronary capillaries to the atrial chamber entering the atrium close to the atrioventricular region. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010912-30 TARGET DEFINITION: Hindbrain interneurons that are part of the reticular formation. The T interneurons receive synaptic input from the Mauthner neuron, from unidentified axons in the mlf, and perhaps from trigeminal sensory fibers. . The axon is T-shaped the proximal segment courses to the midline of the brain and near the midline bifurcates to form an ascending rostral segment and a descending caudal segment. The rostral and caudal segments join the dorsal component of the MLF. The T interneurons are located caudal to CaD and appear to be bilaterally paired. They project to cranial and pectoral motor nuclei. Ceri 2014-07-31T02:33:52Z ZFA:0005182 TAO:0005182 T-interneuron t-interneuron zebrafish_anatomy T shaped reticular neuron cranial relay neuron ZFA:0005815 This term is a leaf node in the zebrafish AO and is not in the CL. T interneuron ZFA:0005815 TARGET DEFINITION: Hindbrain interneurons that are part of the reticular formation. The T interneurons receive synaptic input from the Mauthner neuron, from unidentified axons in the mlf, and perhaps from trigeminal sensory fibers. . The axon is T-shaped the proximal segment courses to the midline of the brain and near the midline bifurcates to form an ascending rostral segment and a descending caudal segment. The rostral and caudal segments join the dorsal component of the MLF. The T interneurons are located caudal to CaD and appear to be bilaterally paired. They project to cranial and pectoral motor nuclei. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-588 cranial relay neuron ZFIN:ZDB-PUB-110110-13 Anterior longitudinal muscles of the dorsal fin. The dorsal fin protractor originates from the base of the first soft ray of the dorsal fin, extends along the midline just underneath the skin, and inserts at the posterior portion of the skull. Contracting the dorsal protractor will raise the fin. Ceri 2014-10-27T12:59:02Z protractor dorsalis zebrafish_anatomy ZFA:0005816 dorsal fin protractor ZFA:0005816 Anterior longitudinal muscles of the dorsal fin. The dorsal fin protractor originates from the base of the first soft ray of the dorsal fin, extends along the midline just underneath the skin, and inserts at the posterior portion of the skull. Contracting the dorsal protractor will raise the fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Anterior longitudinal muscles of the dorsal fin. That originates from the caudal end of the dorsal fin base, stretches along the midline between the right and left epaxial muscles, and inserts at the dorsal base of the tail fin. Contracting the dorsal retractor will lower the fin. Ceri 2014-10-27T01:05:51Z retractor dorsalis zebrafish_anatomy ZFA:0005817 dorsal fin retractor ZFA:0005817 Anterior longitudinal muscles of the dorsal fin. That originates from the caudal end of the dorsal fin base, stretches along the midline between the right and left epaxial muscles, and inserts at the dorsal base of the tail fin. Contracting the dorsal retractor will lower the fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 The layer of caudal fin musculature immediately under the integument that originate from the vertebral column and insert at the base of caudal fin rays. Ceri 2014-10-29T04:13:54Z zebrafish_anatomy ZFA:0005818 superficial caudal fin musculature ZFA:0005818 The layer of caudal fin musculature immediately under the integument that originate from the vertebral column and insert at the base of caudal fin rays. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 The layer of caudal fin musculature immediately under the superficial caudal fin musculature that originate from the vertebral column and insert at the base of caudal fin rays. The three most caudal vertebrae and the hypurals serve as attachment sites for these muscles. Ceri 2014-10-29T04:16:13Z zebrafish_anatomy ZFA:0005819 deep caudal fin musculature ZFA:0005819 The layer of caudal fin musculature immediately under the superficial caudal fin musculature that originate from the vertebral column and insert at the base of caudal fin rays. The three most caudal vertebrae and the hypurals serve as attachment sites for these muscles. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Paired, deep caudal fin muscles that arise broadly from the hypurals and extends dorsocaudally where the fiber bundles converge into a narrow insertion site on the 5th caudal fin ray. Ceri 2014-10-30T09:51:20Z adductor caudalis ventralis zebrafish_anatomy ACV ZFA:0005820 ventral caudal adductor ZFA:0005820 Paired, deep caudal fin muscles that arise broadly from the hypurals and extends dorsocaudally where the fiber bundles converge into a narrow insertion site on the 5th caudal fin ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis ventralis and fans out to attach broadly in a region between the 12th and 16th caudal fin ray. Ceri 2014-10-30T10:11:24Z interfilamenti caudalis ventralis zebrafish_anatomy ICV ZFA:0005821 ventral interfilamental caudal muscle ZFA:0005821 Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis ventralis and fans out to attach broadly in a region between the 12th and 16th caudal fin ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis dorsalis and fans out to attach broadly in a region between the 4th and 8th caudal fin ray. Ceri 2014-10-30T10:14:35Z interfilamenti caudalis dorsalis zebrafish_anatomy ICD ZFA:0005822 dorsal interfilamental caudal muscle ZFA:0005822 Paired superficial caudal fin muscle that has a narrow attachment site along the midline posterior to the attachment of the lateralis superficialis dorsalis and fans out to attach broadly in a region between the 4th and 8th caudal fin ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the dorsal tip of the caudal fin. Ceri 2014-10-30T12:34:51Z lateralis superficialis dorsalis zebrafish_anatomy LSD ZFA:0005823 external lateral dorsal muscle ZFA:0005823 Paired superficial caudal fin muscle that originates from a broad base at the midline and narrows toward its attachment at the dorsal tip of the caudal fin. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Paired superficial caudal fin muscle that is located ventrally and extends from the myoseptum to the ventral tip of the caudal fin where it attaches in the region of the second lowest (eighteenth) long fin ray. Ceri 2014-10-30T12:44:54Z lateralis profundus ventralis zebrafish_anatomy LPV ZFA:0005824 deep lateral ventral muscle ZFA:0005824 Paired superficial caudal fin muscle that is located ventrally and extends from the myoseptum to the ventral tip of the caudal fin where it attaches in the region of the second lowest (eighteenth) long fin ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Paired superfical caudal fin muscle that is located dorsally and extends from the myoseptum to the dorsal tip of the caudal fin where it attaches in the region of the second upper long fin ray. Ceri 2014-10-30T01:24:56Z lateralis profundus dorsalis zebrafish_anatomy LPD ZFA:0005825 deep lateral dorsal muscle ZFA:0005825 Paired superfical caudal fin muscle that is located dorsally and extends from the myoseptum to the dorsal tip of the caudal fin where it attaches in the region of the second upper long fin ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060623-21 Cardiac muscle located in the trabecular layer of the ventricle that is attached to the base of the AV and BV valves. It is similar to the papillary muscle in mammals and birds but, does not attach to the ends of the valve leaflets. Ceri 2015-02-19T03:45:32Z zebrafish_anatomy ZFA:0005826 tri-tipped trabecula ZFA:0005826 Cardiac muscle located in the trabecular layer of the ventricle that is attached to the base of the AV and BV valves. It is similar to the papillary muscle in mammals and birds but, does not attach to the ends of the valve leaflets. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-121030-7 Cardiac muscle located in the trabecular layer of the ventricle that spans the central lumen near the ventricular apex. The transverse muscle band superficially resembles the septomarginal trabecula found in reptilian and mammalian hearts in that it spans the ventricle. Ceri 2015-02-19T03:48:37Z zebrafish_anatomy ZFA:0005827 transverse band ZFA:0005827 Cardiac muscle located in the trabecular layer of the ventricle that spans the central lumen near the ventricular apex. The transverse muscle band superficially resembles the septomarginal trabecula found in reptilian and mammalian hearts in that it spans the ventricle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-121030-7 An olfactory receptor cells with apical microvilli. The pear shaped soma is located in the apical region of the olfactory epithelium. They project to a single glomerulus, mdG5. Ceri 2015-02-20T10:55:06Z kappe neuron zebrafish_anatomy ZFA:0005828 kappe olfactory receptor neuron ZFA:0005828 An olfactory receptor cells with apical microvilli. The pear shaped soma is located in the apical region of the olfactory epithelium. They project to a single glomerulus, mdG5. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140416-5 Vessel that drains aqueous humor from the eye. Ceri 2015-02-23T10:20:30Z zebrafish_anatomy ZFA:0005829 ZDB-PUB-140728-8 says the canal has lymphatic-like. Schlemm's canal ZFA:0005829 Vessel that drains aqueous humor from the eye. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-140728-8 A cell of a hematopoietic lineage. Ceri 2015-02-27T09:55:34Z CL:0000988 haematopoietic cell hemopoietic cell zebrafish_anatomy haemopoietic cell ZFA:0005830 hematopoietic cell ZFA:0005830 A cell of a hematopoietic lineage. CL:curator Interconnected lymph vasculature in the anterior portion of the head. Ceri 2015-04-21T03:16:49Z zebrafish_anatomy facial lymphatics ZFA:0005831 facial lymphatic network ZFA:0005831 Interconnected lymph vasculature in the anterior portion of the head. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Superficial lymph vessel that is part of pharyngeal arch 3. The vessel sprouts from the lateral facial lymph vessel. Ceri 2015-04-21T04:16:23Z LAA1 zebrafish_anatomy ZFA:0005832 lymphatic branchial arch 1 ZFA:0005832 Superficial lymph vessel that is part of pharyngeal arch 3. The vessel sprouts from the lateral facial lymph vessel. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 LAA1 ZFIN:ZDB-PUB-120529-43 Superficial lymph vessel that is part of pharyngeal arch 4. The vessel sprouts from the lateral facial lymph vessel. Ceri 2015-04-22T10:05:13Z LAA2 zebrafish_anatomy ZFA:0005833 lymphatic branchial arch 2 ZFA:0005833 Superficial lymph vessel that is part of pharyngeal arch 4. The vessel sprouts from the lateral facial lymph vessel. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 LAA2 ZFIN:ZDB-PUB-120529-43 Superficial lymph vessel that is part of pharyngeal arch 5. The vessel sprouts from the lateral facial lymph vessel. Ceri 2015-04-22T10:06:52Z LAA3 zebrafish_anatomy ZFA:0005834 lymphatic branchial arch 3 ZFA:0005834 Superficial lymph vessel that is part of pharyngeal arch 5. The vessel sprouts from the lateral facial lymph vessel. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 LAA3 ZFIN:ZDB-PUB-120529-43 Superficial lymph vessel that is part of pharyngeal arch 6. The vessel sprouts from the lateral facial lymph vessel. Ceri 2015-04-22T10:18:37Z LAA4 zebrafish_anatomy ZFA:0005835 lymphatic branchial arch 4 ZFA:0005835 Superficial lymph vessel that is part of pharyngeal arch 6. The vessel sprouts from the lateral facial lymph vessel. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 LAA4 ZFIN:ZDB-PUB-120529-43 Lymphangiogenic sprout that originates from the common cardinal vein and extends along the primary head sinus. Ceri 2015-04-22T12:15:12Z FLS zebrafish_anatomy ZFA:0005836 Although a facial lymphatic vessel has previously been described using lymphangiography in 5-week-old zebrafish (Yaniv et al., 2006), we are not sure whether this previously described vessel is connected to, or derived from, the FL network that we have identified (ZDB-PUB-120529-43). facial lymphatic sprout ZFA:0005836 Lymphangiogenic sprout that originates from the common cardinal vein and extends along the primary head sinus. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Superfical lymph vessel part of the facial lymphatic network that develops from the facial lymphatic sprout. The lateral facial lymph vessel runs toward the mandibular arch and tracks around the eye toward the jaw. Ceri 2015-04-22T12:41:36Z LFL lateral facial lymphatic zebrafish_anatomy ZFA:0005837 lateral facial lymph vessel ZFA:0005837 Superfical lymph vessel part of the facial lymphatic network that develops from the facial lymphatic sprout. The lateral facial lymph vessel runs toward the mandibular arch and tracks around the eye toward the jaw. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Facial lymphatic vessel that sprouts from the lateral facial lymph vessel. The path lies parallel to the posterior cerebral vein but is not in contact with a blood vessel. Ceri 2015-04-22T02:06:44Z otolithic lymphatic vessel zebrafish_anatomy ZFA:0005838 otolithic lymph vessel ZFA:0005838 Facial lymphatic vessel that sprouts from the lateral facial lymph vessel. The path lies parallel to the posterior cerebral vein but is not in contact with a blood vessel. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 otolithic lymphatic vessel ZFIN:ZDB-PUB-120529-43 Facial lymph vessel that sprouts from the lateral facial lymph vessel. The path of the medial vessel runs ventromedially towards the ventral aorta. Ceri 2015-04-23T01:49:47Z MFL medial facial lymphatic zebrafish_anatomy ZFA:0005839 medial facial lymph vessel ZFA:0005839 Facial lymph vessel that sprouts from the lateral facial lymph vessel. The path of the medial vessel runs ventromedially towards the ventral aorta. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Lymph vasculature surrounding the intestines. Ceri 2015-04-30T11:15:28Z intestinal lymphatics zebrafish_anatomy <new synonym> ZFA:0005840 intestinal lymphatic network ZFA:0005840 Lymph vasculature surrounding the intestines. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Lymph vessel that follows the supraintestinal artery. Ceri 2015-04-30T11:25:27Z UR-IL zebrafish_anatomy ZFA:0005841 upper right intestinal lymph vessel ZFA:0005841 Lymph vessel that follows the supraintestinal artery. GOC:CVS ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 UR-IL ZFIN:ZDB-PUB-120529-43 Pair of lymph vessel that follows the right subintestinal vein. At 6 dpf, the LR-IL appears to bifurcate and form two separate vessels that both run in close proximity to one another along the right sub intestinal vein. These vessels are difficult to distinguish from each other at 6dp. Ceri 2015-04-30T11:28:11Z LR-IL zebrafish_anatomy ZFA:0005842 lower right intestinal lymph vessel ZFA:0005842 Pair of lymph vessel that follows the right subintestinal vein. At 6 dpf, the LR-IL appears to bifurcate and form two separate vessels that both run in close proximity to one another along the right sub intestinal vein. These vessels are difficult to distinguish from each other at 6dp. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Lymph vessels that are on the right side of the intestine. Ceri 2015-04-30T11:31:28Z zebrafish_anatomy ZFA:0005843 right intestinal lymphatics ZFA:0005843 Lymph vessels that are on the right side of the intestine. GOC:cvs ORCID:0000-0002-2244-7917 Any of the tubular multi-tissue structures through which lymph moves in the body. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. Ceri 2015-04-30T11:44:00Z zebrafish_anatomy ZFA:0005844 lymph vessel ZFA:0005844 Any of the tubular multi-tissue structures through which lymph moves in the body. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. GOC:cvs ORCID:0000-0002-2244-7917 Lymph vessel that extends along the left subintestinal vein. Ceri 2015-04-30T11:49:08Z LL-IL lower left intestinal lymphatic zebrafish_anatomy ZFA:0005845 lower left intestinal lymph vessel ZFA:0005845 Lymph vessel that extends along the left subintestinal vein. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Lymph vessels that are on the left side of the intestine. These do not run as far posteriorly as the right intestinal lymphatics. Ceri 2015-04-30T11:52:58Z zebrafish_anatomy ZFA:0005846 left intestinal lymphatics ZFA:0005846 Lymph vessels that are on the left side of the intestine. These do not run as far posteriorly as the right intestinal lymphatics. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Lymph vessel on the left of the intestine that runs parallel to the upper right intestinal lymph vessel. There does not appear to be an associated blood vessel. Ceri 2015-04-30T12:28:46Z UL-IL zebrafish_anatomy ZFA:0005847 upper left intestinal lymph vessel ZFA:0005847 Lymph vessel on the left of the intestine that runs parallel to the upper right intestinal lymph vessel. There does not appear to be an associated blood vessel. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-120529-43 Lymph vessel that connects lymph vessels within the intestinal lymphatic network. Ceri 2015-04-30T01:40:05Z zebrafish_anatomy ZFA:0005848 intestinal interlymphatic vessel ZFA:0005848 Lymph vessel that connects lymph vessels within the intestinal lymphatic network. GOC:cvs ORCID:0000-0002-2244-7917 Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These structures successively replace the primary ceratobranchial teeth. 2015-06-19T12:48:15Z zebrafish_anatomy ZFA:0005849 ceratobranchial 5 replacement tooth ZFA:0005849 Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These structures successively replace the primary ceratobranchial teeth. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-001208-4 A cluster of neurons first visible in the embryonic diencephalon located in the dorsolateral brain just posterior to the posterior commissure, that project growth cones ventrally along the posterior commissure to the anterior tegmentum where the PC intersects two longitudinal tracts, the tract of the postoptic commissure (TPOC) and the medial longitudinal fasciculus (MLF). Once at the intersection, nuc PC growth cones turn posteriorly onto the TPOC in the dorsal tegmentum and follow it to the hindbrain. Ceri 2015-06-19T03:27:22Z nuc PC nucleus of posterior commissure zebrafish_anatomy nTPC nucleus of the tract of the posterior commissure ZFA:0005850 nucleus of the caudal commissure ZFA:0005850 A cluster of neurons first visible in the embryonic diencephalon located in the dorsolateral brain just posterior to the posterior commissure, that project growth cones ventrally along the posterior commissure to the anterior tegmentum where the PC intersects two longitudinal tracts, the tract of the postoptic commissure (TPOC) and the medial longitudinal fasciculus (MLF). Once at the intersection, nuc PC growth cones turn posteriorly onto the TPOC in the dorsal tegmentum and follow it to the hindbrain. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-167 ZFIN:ZDB-PUB-961014-170 Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These are the first teeth to develop. Ceri 2015-07-01T04:53:58Z zebrafish_anatomy ZFA:0005851 ceratobranchial 5 primary tooth ZFA:0005851 Is a multi-tissue structure composed of dentine, enameloid and tooth pulp that develops from the dental organ. These are the first teeth to develop. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-020820-10 Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 4V. Ceri 2015-07-01T04:55:16Z zebrafish_anatomy ZFA:0005852 replacement tooth 4V ZFA:0005852 Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 4V. GOC:cvs ORCiD:0000-0002-2244-7917 Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 5V. Ceri 2015-07-02T09:04:21Z zebrafish_anatomy ZFA:0005853 replacement tooth 5V ZFA:0005853 Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 5V. GOC:cvs ORCiD:0000-0002-2244-7917 Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 3V. Ceri 2015-07-02T09:05:23Z zebrafish_anatomy ZFA:0005854 replacement tooth 3V ZFA:0005854 Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 3V. GOC:cvs ORCiD:0000-0002-2244-7917 Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 2V. Ceri 2015-07-02T09:18:29Z zebrafish_anatomy ZFA:0005855 replacement tooth 2V ZFA:0005855 Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 2V. GOC:cvs ORCiD:0000-0002-2244-7917 Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 1V. Ceri 2015-07-02T09:19:35Z zebrafish_anatomy ZFA:0005856 replacement tooth 1V ZFA:0005856 Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. This tooth develops from the dental epithelium at the position of primary tooth 1V. GOC:cvs ORCiD:0000-0002-2244-7917 Zebrafish bile contains the bile alcohol cyprinol sulfate. Ceri 2015-07-31T11:15:59Z zebrafish_anatomy ZFA:0005857 bile ZFA:0005857 Zebrafish bile contains the bile alcohol cyprinol sulfate. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120822-8 Capillaries that branch from the hyaloid artery and drain into the hyaloid vein. The hyaloid capillaries are located behind the lens and may be transient. Ceri 2015-08-17T04:43:51Z zebrafish_anatomy ZFA:0005858 hyaloid capillaries ZFA:0005858 Capillaries that branch from the hyaloid artery and drain into the hyaloid vein. The hyaloid capillaries are located behind the lens and may be transient. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-150419-5 Joint that articulates the interhyal skeletal element and ceratohyal skeletal element. The ceratohyal-interhyal joint is paired. Ceri 2015-09-09T01:15:07Z zebrafish_anatomy ZFA:0005859 ceratohyal-interhyal joint ZFA:0005859 Joint that articulates the interhyal skeletal element and ceratohyal skeletal element. The ceratohyal-interhyal joint is paired. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-970210-30 Joint that articulates the interhyal element and the hyosymplectic element. The interhyal-hyosymplectic joint is paired. Ceri 2015-09-09T01:28:54Z zebrafish_anatomy ZFA:0005860 interhyal-hyosymplectic joint ZFA:0005860 Joint that articulates the interhyal element and the hyosymplectic element. The interhyal-hyosymplectic joint is paired. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-970210-30 Joint that articulates the opercle and they hyosymplectic. The opercle-hyosymplectic joint is paired. Ceri 2015-09-09T01:33:46Z zebrafish_anatomy ZFA:0005861 opercle-hyosymplectic joint ZFA:0005861 Joint that articulates the opercle and they hyosymplectic. The opercle-hyosymplectic joint is paired. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-970210-30 Lymph vessels within the ovary. These vessels are located in the interstitium between ovarian follicles and appear to envelop arterioles. Ceri 2015-10-28T12:00:39Z zebrafish_anatomy ZFA:0005862 ovarian lymph vessel ZFA:0005862 Lymph vessels within the ovary. These vessels are located in the interstitium between ovarian follicles and appear to envelop arterioles. GOC:CVS ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-130218-10 Pectoral fin muscle. Links pectoral fin and branchial movement and stabilizes the pectoral girdle. Thought to be the teleost homologue of the cucullaris muscle group. Ceri 2015-10-28T04:41:12Z protractor pectoralis zebrafish_anatomy ZFA:0005863 pectoral protractor ZFA:0005863 Pectoral fin muscle. Links pectoral fin and branchial movement and stabilizes the pectoral girdle. Thought to be the teleost homologue of the cucullaris muscle group. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-110803-26 protractor pectoralis ZFIN:ZDB-PUB-110803-26 Portion of optic tract that innervates the optic tectum. Ceri 2016-01-11T03:48:45Z zebrafish_anatomy ZFA:0005864 retinotectal tract ZFA:0005864 Portion of optic tract that innervates the optic tectum. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1095 ZFIN:ZDB-PUB-961014-148 Neuron with the large soma in the brain with an axon projecting caudally to the spinal cord. Ceri 2016-01-12T10:33:08Z zebrafish_anatomy ZFA:0005865 reticulospinal neuron ZFA:0005865 Neuron with the large soma in the brain with an axon projecting caudally to the spinal cord. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-594 CNS interneuron with a soma located in a cluster in the lateral wall of the medulla, with dendrites confined to the neuropil, that has connections to the vestibular and lateral line neurons. Ceri 2016-01-12T11:25:07Z zebrafish_anatomy V ZFA:0005866 vestibulospinal neuron ZFA:0005866 CNS interneuron with a soma located in a cluster in the lateral wall of the medulla, with dendrites confined to the neuropil, that has connections to the vestibular and lateral line neurons. ZFIN:ZDB-PUB-961014-572 Mesoderm part of the head. Ceri 2016-01-14T02:01:33Z zebrafish_anatomy ZFA:0005867 cephalic mesoderm ZFA:0005867 Mesoderm part of the head. GOC:cvs ORCiD:0000-0002-2244-7917, Rostral cell mass bordering the pretectum. The cells are stained with the gene nurod and are Hu positive. The region is named for its presumed homology to the avian griseum tectale. Ceri 2016-01-22T12:54:41Z tectal grey zebrafish_anatomy ZFA:0005868 griseum tectale ZFA:0005868 Rostral cell mass bordering the pretectum. The cells are stained with the gene nurod and are Hu positive. The region is named for its presumed homology to the avian griseum tectale. ZFIN:ZDB-PUB-070711-1 Multi-tissue structure that is made up of the external granular layer and the ventral proliferative layer. Ceri 2016-02-02T11:33:30Z zebrafish_anatomy ZFA:0005869 cerebellar plate ZFA:0005869 Multi-tissue structure that is made up of the external granular layer and the ventral proliferative layer. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070711-1 Proliferative zone on the ventral side of the cerebellar plate. Ceri 2016-02-02T11:45:44Z zebrafish_anatomy ZFA:0005870 cerebellar plate ventral proliferative layer ZFA:0005870 Proliferative zone on the ventral side of the cerebellar plate. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070711-1 Portion of tissue in the midbrain that will develop into the nucleus of the medial longitudinal fasciculus synencephalon. Ceri 2016-02-02T11:47:50Z zebrafish_anatomy ZFA:0005871 region of the nucleus of the medial longitudinal fascicle ZFA:0005871 Portion of tissue in the midbrain that will develop into the nucleus of the medial longitudinal fasciculus synencephalon. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070711-1 Proliferative region that forms on peripheral side of the cerebellar plate. Ceri 2016-02-02T11:50:39Z EGL zebrafish_anatomical_ontology cerebellar plate peripheral proliferative zone ZFA:0005872 external granular layer of the cerebellar plate ZFA:0005872 Proliferative region that forms on peripheral side of the cerebellar plate. GOC:cvs ORCiD:0000-0002-2244-7917 ORDCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-070711-1 A neuron that releases norephinephrine (noradrenaline) as a neurotransmitter. Ceri 2016-03-22T02:18:57Z CL:0008025 zebrafish_anatomy ZFA:0005873 noradrenergic neuron ZFA:0005873 A neuron that releases norephinephrine (noradrenaline) as a neurotransmitter. CL:Curator Spiral neurons are excitatory interneurons located in rhombomere 3 and have contralateral projections that cross the midline forming commissures in rhombomere 3. After crossing the midline the two commissures fuse and project caudally synapsing with the Mauthner neuron. As they enter the axon cap, spiral fiber neurons lose their myelin and wrap around the axon hillock in a stereotyped spiral, where they make both electrical and glutamatergic synapses on the M cell axon close to the M-cell soma and with one another. Spiral neurons produced biphasic excitatory postsynaptic potentials (EPSPs) in the contralateral M-cell with a short latency. Ceri 2016-03-23T01:14:15Z zebrafish_anatomy ZFA:0005874 spiral neuron ZFA:0005874 Spiral neurons are excitatory interneurons located in rhombomere 3 and have contralateral projections that cross the midline forming commissures in rhombomere 3. After crossing the midline the two commissures fuse and project caudally synapsing with the Mauthner neuron. As they enter the axon cap, spiral fiber neurons lose their myelin and wrap around the axon hillock in a stereotyped spiral, where they make both electrical and glutamatergic synapses on the M cell axon close to the M-cell soma and with one another. Spiral neurons produced biphasic excitatory postsynaptic potentials (EPSPs) in the contralateral M-cell with a short latency. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-010711-2 ZFIN:ZDB-PUB-110110-13 ZFIN:ZDB-PUB-150512-4 Tract that extends from the intersection of the tract of the postoptic commissure and supraoptic tract that projects caudally across the hypothalamus and into the commissure of the caudal tuberculum. The axons appear to originate from a symmetric group of neurons in the forebrain that travel caudally into the diencephalon and then decussate, with some axons continuing to travel longitudinally and join other axons crossing the midline. There does not appear to be a clear ortholog of the TCPT in mammals; and the function(s) of the TCPT are not currently known. Ceri 2016-06-07T10:08:17Z TCPT tract of the commissure of the posterior tuberculum zebrafish_anatomy ZFA:0005875 This tract was originally identified in zebrafish by Wilson et al., 1990. tract of the commissure of the caudal tuberculum ZFA:0005875 Tract that extends from the intersection of the tract of the postoptic commissure and supraoptic tract that projects caudally across the hypothalamus and into the commissure of the caudal tuberculum. The axons appear to originate from a symmetric group of neurons in the forebrain that travel caudally into the diencephalon and then decussate, with some axons continuing to travel longitudinally and join other axons crossing the midline. There does not appear to be a clear ortholog of the TCPT in mammals; and the function(s) of the TCPT are not currently known. GOC:cvs GOC:dsf ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-1268 TCPT ZFIN:ZDB-PUB-961014-1268 The space between the cornea and lens in the anterior segment of the eye where the aqueous humor is located. Ceri 2016-10-13T15:42:03Z zebrafish_anatomy ZFA:0005876 anterior chamber eye ZFA:0005876 The space between the cornea and lens in the anterior segment of the eye where the aqueous humor is located. GOC:cvs ORCiD:0000-0002-2244-7917 Commissure that is formed by a subset of TCPT axons that cross the midline in the diencephalon. The TCPTc does not appear to cross with other commissures. The initial crossing of the TCPTc occurs at approximately 36 hpf. Ceri 2016-10-18T10:07:14Z Commissure of the TCPT zebrafish_anatomy ZFA:0005877 commissure of the tract of the commissure of the caudal tuberculum ZFA:0005877 Commissure that is formed by a subset of TCPT axons that cross the midline in the diencephalon. The TCPTc does not appear to cross with other commissures. The initial crossing of the TCPTc occurs at approximately 36 hpf. GOC:cvs GOC:dsf ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120419-3. An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes. In zebrafish oogonia are round cells, with centrally located nucleoli, which are strongly basophilic. Oogonia in larva zebrafish fish are often found in clusters of two or four cells, corresponding to the second, or third oogonial divisions, presumably arising from mitotic divisions of primordial germ cells. Ceri 2016-12-14T12:05:24Z CL:0000024 zebrafish_anatomy ZFA:0005878 oogonia ZFA:0005878 An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes. In zebrafish oogonia are round cells, with centrally located nucleoli, which are strongly basophilic. Oogonia in larva zebrafish fish are often found in clusters of two or four cells, corresponding to the second, or third oogonial divisions, presumably arising from mitotic divisions of primordial germ cells. GOC:cvs GOC:tfm ISBN:0721662544 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-120718-30 Tubules formed by the seminiferous epithelium that contains spermatogenic cyst surrounded by somatic support cells, called Sertoli cells. The lumen of he seminiferous tubules connects to the sperm or efferent duct. Ceri 2017-04-28T11:17:00Z sperm duct seminiferous tubules zebrafish_anatomy ZFA:0005879 seminiferous tubule ZFA:0005879 Tubules formed by the seminiferous epithelium that contains spermatogenic cyst surrounded by somatic support cells, called Sertoli cells. The lumen of he seminiferous tubules connects to the sperm or efferent duct. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090407-9 seminiferous tubules Epithelium that lines the seminiferous tubules. Ceri 2017-05-16T12:39:16Z zebrafish_anatomy ZFA:0005880 seminiferous epithelium ZFA:0005880 Epithelium that lines the seminiferous tubules. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090407-9 The membranous sheath that surrounding the seminiferous tubule. Ceri 2017-05-16T12:44:18Z zebrafish_anatomy ZFA:0005881 tunica propria of seminiferous tubule ZFA:0005881 The membranous sheath that surrounding the seminiferous tubule. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090407-9 Structure in the testis formed by cytoplasmic projections of one or two Sertoli cells that surround a single spermatogonium. Sperm production occurs with in the cyst and the spermatogonium divides to generate approximately 1300 mature sperm. A given Sertoli cell is in contact with only one germ cell clone. Ceri 2017-05-16T12:48:48Z zebrafish_anatomy ZFA:0005882 spermatogenic cyst ZFA:0005882 Structure in the testis formed by cytoplasmic projections of one or two Sertoli cells that surround a single spermatogonium. Sperm production occurs with in the cyst and the spermatogonium divides to generate approximately 1300 mature sperm. A given Sertoli cell is in contact with only one germ cell clone. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090407-9 Membranous sheath that surrounds the testis. Ceri 2017-05-16T12:51:24Z zebrafish_anatomy ZFA:0005883 tunica albuginea testis ZFA:0005883 Membranous sheath that surrounds the testis. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090407-9 Lumen of the seminiferous tubule. Mature sperm is stored in the tubular lumen. Ceri 2017-05-16T13:18:07Z zebrafish_anatomy ZFA:0005884 seminiferous tubule lumen ZFA:0005884 Lumen of the seminiferous tubule. Mature sperm is stored in the tubular lumen. GOC:cvs ORCiD:0000-0002-2244-7917 https://en.wikibooks.org/wiki/The_Zebrafish_in_Toxicology/Spermatogenesis Ligament that connects the anterior apex of the opercle to the posterior end of the ceratohyal. The ligament extends orthogonal and anterior to the opercle. 2017-06-12T13:27:26Z zebrafish_anatomy ZFA:0005885 operculohyoid ligament ZFA:0005885 Ligament that connects the anterior apex of the opercle to the posterior end of the ceratohyal. The ligament extends orthogonal and anterior to the opercle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-161030-16 Cartilage that attaches the parachordal cartilage to the auditory capsule anterior to the basicapsular fenestra. The anterior basicapsular commissure are paired. Ceri 2017-10-20T11:38:57Z anterior basicranial commissure zebrafish_anatomy ZFA:0005886 anterior basicapsular commissure ZFA:0005886 Cartilage that attaches the parachordal cartilage to the auditory capsule anterior to the basicapsular fenestra. The anterior basicapsular commissure are paired. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 anterior basicranial commissure ZFIN:ZDB-PUB-970819-13 Cartilage that attaches the parachordal cartilage to the auditory capsule posterior of the basicapsular fenestra. The posterior basicapsular commissure are paired. Ceri 2017-10-20T11:42:11Z posterior basicranial commissure zebrafish_anatomy ZFA:0005887 posterior basicapsular commissure ZFA:0005887 Cartilage that attaches the parachordal cartilage to the auditory capsule posterior of the basicapsular fenestra. The posterior basicapsular commissure are paired. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 posterior basicranial commissure ZFIN:ZDB-PUB-970819-13 Cartilage that grows from the auditory capsule medially toward the anterior end of the parachordal cartilage to enclose the hyomandibular (facial) foramen. The lateral basicapsular commissure are paired. Ceri 2017-10-20T11:51:14Z lateral basicranial commissure zebrafish_anatomy lateral commissure ZFA:0005888 lateral basicapsular commissure ZFA:0005888 Cartilage that grows from the auditory capsule medially toward the anterior end of the parachordal cartilage to enclose the hyomandibular (facial) foramen. The lateral basicapsular commissure are paired. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-970819-13 lateral basicranial commissure ZFIN:ZDB-PUB-970819-13 lateral commissure ZFIN:ZDB-PUB-970819-13 Syndesmosis that connects the posterior lateral edge of the epiotic to the posttemporal. The epiotic-posttemporal joint is paired. Ceri 2017-10-20T15:00:45Z epioccipital-posttemporal joint zebrafish_anatomy ZFA:0005889 epiotic-posttemporal joint ZFA:0005889 Syndesmosis that connects the posterior lateral edge of the epiotic to the posttemporal. The epiotic-posttemporal joint is paired. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Canal where the carotid artery enters the cranium. Located between the parasphenoid and prootic bones in adult fish. Ceri 2017-10-25T14:53:32Z zebrafish_anatomy ZFA:0005890 carotid artery canal ZFA:0005890 Canal where the carotid artery enters the cranium. Located between the parasphenoid and prootic bones in adult fish. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Syndesmosis that connects the anterior edge epiotic to the parietal. The epiotic-parietal joint is paired. Ceri 2017-10-20T15:30:23Z epioccipital-parietal zebrafish_anatomy ZFA:0005891 epiotic-parietal joint ZFA:0005891 Syndesmosis that connects the anterior edge epiotic to the parietal. The epiotic-parietal joint is paired. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development. Ceri 2017-10-20T16:00:30Z lateral occipital foramina zebrafish_anatomy ZFA:0005892 lateral occipital foramen ZFA:0005892 Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 lateral occipital foramina ZFIN:ZDB-PUB-961014-192 Foramen in the exoccipital through which the glossopharyngeal nerve (cranial nerve IX) passes. Ceri 2017-10-20T16:05:15Z zebrafish_anatomy ZFA:0005893 glossopharyngeal foramen ZFA:0005893 Foramen in the exoccipital through which the glossopharyngeal nerve (cranial nerve IX) passes. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Foramen in the exoccipital through which the vagus nerve (cranial nerve X) passes. Ceri 2017-10-20T16:06:35Z zebrafish_anatomy ZFA:0005894 vagus foramen ZFA:0005894 Foramen in the exoccipital through which the vagus nerve (cranial nerve X) passes. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Chamber in the prootic where the trunks of the trigeminal facial nerve complex pass from the brain to the outside of the cranium. In the adult, a posteromedial extension from the prootic delimits the medial boundary of the trigeminal-facial chamber. The anterior opening of the trigeminal-facial chamber lies between the prootic and the pterosphenoid. Ceri 2017-10-27T16:53:59Z trigeminofacialis chamber zebrafish_anatomy ZFA:0005895 trigeminal-facial chamber ZFA:0005895 Chamber in the prootic where the trunks of the trigeminal facial nerve complex pass from the brain to the outside of the cranium. In the adult, a posteromedial extension from the prootic delimits the medial boundary of the trigeminal-facial chamber. The anterior opening of the trigeminal-facial chamber lies between the prootic and the pterosphenoid. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-192 Longitudinal unpaired muscle that attaches to the base of the most posterior ray of the anal fin (usually ray 14) and runs posteriorly into he hypaxial musculature of the caudal fin. The anal retractor pulls the anal fin toward the body. ceriv 2018-02-12T10:14:25Z infracarinalis posterior retractor analis zebrafish_anatomy ZFA:0005896 anal retractor ZFA:0005896 Longitudinal unpaired muscle that attaches to the base of the most posterior ray of the anal fin (usually ray 14) and runs posteriorly into he hypaxial musculature of the caudal fin. The anal retractor pulls the anal fin toward the body. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 infracarinalis posterior ZFIN:ZDB-PUB-151106-17 ZFIN:ZDB-PUB-180212-2 retractor analis ZFIN:ZDB-PUB-171118-8 Longitudinal muscle that on the anterior end is continuous with the retractor ischii and on the posterior end inserts into the base of the first anal ray. ceriv 2018-02-12T10:37:38Z protractor analis zebrafish_anatomy infracarinalis medius ZFA:0005897 anal protractor ZFA:0005897 Longitudinal muscle that on the anterior end is continuous with the retractor ischii and on the posterior end inserts into the base of the first anal ray. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-171118-8 protractor analis ZFIN:ZDB-PUB-171118-8 infracarinalis medius ZFIN:ZDB-PUB-151106-17 ZFIN:ZDB-PUB-180212-2 Tissue that lies between the caudal artery and the caudal vein plexus where definitive hematopoiesis occurs after 48hpf and before the hematopoietic progenitors migrate to the thymus and kidney. Ceri 2018-02-21T12:40:50Z zebrafish_anatomy posterior blood island ZFA:0005898 caudal hematopoietic tissue ZFA:0005898 Tissue that lies between the caudal artery and the caudal vein plexus where definitive hematopoiesis occurs after 48hpf and before the hematopoietic progenitors migrate to the thymus and kidney. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-061227-29 ZFIN:ZDB-PUB-070303-37 posterior blood island ZFIN:ZDB-PUB-070303-37 The initial growth point of the scale. In zebrafish the focus is on the anterior edge of the scale. Ceri 2018-08-30T16:47:45Z zebrafish_anatomy ZFA:0005899 scale focus ZFA:0005899 The initial growth point of the scale. In zebrafish the focus is on the anterior edge of the scale. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180311-2 Grooves on the scale radiating from the focus. Zebrafish have primary radii that start at the focus and extend to the posterior margin of the scale. Ceri 2018-08-30T16:50:48Z scale radii zebrafish_anatomy ZFA:0005900 scale radius ZFA:0005900 Grooves on the scale radiating from the focus. Zebrafish have primary radii that start at the focus and extend to the posterior margin of the scale. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180311-2 scale radii Transient groove in the dorsal eye lined by basal lamina. The groove extends across the dorsal retina to partially separate the nasal and temporal retinal lobes. The sulcus forms soon after optic cup formation and as the eye develops it becomes broader and shallower until it is undetectable. Ceri 2018-09-05T16:23:34Z dorsal ocular sulcus zebrafish_anatomy ZFA:0005901 superior ocular sulcus ZFA:0005901 Transient groove in the dorsal eye lined by basal lamina. The groove extends across the dorsal retina to partially separate the nasal and temporal retinal lobes. The sulcus forms soon after optic cup formation and as the eye develops it becomes broader and shallower until it is undetectable. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180310-10 A medial cartilaginous spur that develops from the dorsomedial edge of the palatoquadrate. It is derived from cells located in the maxillary prominence of the first pharyngeal arch and gives rise to the metapterygoid. Ceri 2018-09-12T09:53:49Z zebrafish_anatomy Ptp ZFA:0005902 pterygoid process ZFA:0005902 A medial cartilaginous spur that develops from the dorsomedial edge of the palatoquadrate. It is derived from cells located in the maxillary prominence of the first pharyngeal arch and gives rise to the metapterygoid. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-100726-23 ZFIN:ZDB-PUB-961014-192 Skeletal tissue that is an extension of a skeletal element composed of cartilage. Ceri 2018-09-12T10:11:35Z zebrafish_anatomy ZFA:0005903 cartilaginous projection ZFA:0005903 Skeletal tissue that is an extension of a skeletal element composed of cartilage. GOC:cvs ORCiD:0000-0002-2244-7917 A protrusion of cartilage at the posteroventral tip of Meckel's cartilage that gives rise to the retroarticular. Ceri 2018-09-12T10:37:59Z zebrafish_anatomy ZFA:0005904 retroarticular process ZFA:0005904 A protrusion of cartilage at the posteroventral tip of Meckel's cartilage that gives rise to the retroarticular. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-161203-3 Cartilaginous protrusion on the posterodorsal region of Meckel's cartilage. The coronoid process of Meckel's cartilage forms the dorsal portion of the articulation with the anteroventral corner of the palatoquadrate. Ceri 2018-09-12T14:26:48Z coronoid process of Meckel's cartilage zebrafish_anatomy ZFA:0005905 coronoid process ZFA:0005905 Cartilaginous protrusion on the posterodorsal region of Meckel's cartilage. The coronoid process of Meckel's cartilage forms the dorsal portion of the articulation with the anteroventral corner of the palatoquadrate. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060724-1 ZFIN:ZDB-PUB-161203-3 Thread-like fibrous aggregation of secreted molecules extending from the subcommissural organ (SCO) through the ventricular system and central canal to the end of the spinal cord. ceriv 2018-11-29T11:06:47Z zebrafish_anatomy ZFA:0005906 Reissner's fiber ZFA:0005906 Thread-like fibrous aggregation of secreted molecules extending from the subcommissural organ (SCO) through the ventricular system and central canal to the end of the spinal cord. GOC:cvs ISBN:978-0471888895 ZFIN:ZDB-PUB-980205-16 Neuronal tissue that is the arborization field for the majority of the ganglion cell axons, it also holds other incoming axons, for example, from the pretectum and the contralateral tectum, as well as the dendrites and axons of tectal interneurons and projection neurons. Ceri 2019-01-28T17:08:19Z zebrafish_anatomy synaptic neuropil tectial lamina ZFA:0005907 tectal neuropile ZFA:0005907 Neuronal tissue that is the arborization field for the majority of the ganglion cell axons, it also holds other incoming axons, for example, from the pretectum and the contralateral tectum, as well as the dendrites and axons of tectal interneurons and projection neurons. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-081218-37 synaptic neuropil ZFIN:ZDB-PUB-101101-16 tectial lamina ZFIN:ZDB-PUB-081218-37 Region the larval brain that is a forerunner of the adult central and superficial pretectal regions. This region is non ventricular neural proliferation zone. Ceri 2019-01-29T16:22:51Z M1 zebrafish_anatomy ZFA:0005908 presumptive pretectum proliferative zone ZFA:0005908 Region the larval brain that is a forerunner of the adult central and superficial pretectal regions. This region is non ventricular neural proliferation zone. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-030115-8 ZFIN:ZDB-PUB-990406-3 M1 ZFIN:ZDB-PUB-070711-1 Region that gives rise to various caudal tubercular structures in the preglomerular region This region is non ventricular neural proliferation zone and doesn't express GABA. Ceri 2019-01-29T16:37:24Z zebrafish_anatomy M2 early migrated posterior tubercular region preglomerular anlagen ZFA:0005909 presumptive preglomerular region ZFA:0005909 Region that gives rise to various caudal tubercular structures in the preglomerular region This region is non ventricular neural proliferation zone and doesn't express GABA. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-020912-2 ZFIN:ZDB-PUB-030115-8 M2 ZFIN:ZDB-PUB-070711-1 early migrated posterior tubercular region ZFIN:ZDB-PUB-070711-1 preglomerular anlagen ZFIN:ZDB-PUB-020912-2 Portion of tissue that is presumed to give rise to the entopenduncular nucleus. Ceri 2019-01-30T13:02:59Z M3 zebrafish_anatomy ZFA:0005910 presumptive ventral entopeduncular nucleus ZFA:0005910 Portion of tissue that is presumed to give rise to the entopenduncular nucleus. ZFIN:ZDB-PUB-040304-8 ZFIN:ZDB-PUB-090914-27 Portion of tissue that gives rise to the lateral nucleus of the ventral telencephalon. The area sometimes called M4 does not express GABA or dlx2a. Ceri 2019-01-30T13:42:52Z zebrafish_anatomy M4 lateral nucleus of area ventralis telencepha ZFA:0005911 presumptive lateral nucleus of ventral telencephalon ZFA:0005911 Portion of tissue that gives rise to the lateral nucleus of the ventral telencephalon. The area sometimes called M4 does not express GABA or dlx2a. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-090814-14 ZFIN:ZDB-PUB-090914-27 M4 ZFIN:ZDB-PUB-090814-14 lateral nucleus of area ventralis telencepha ZFIN:ZDB-PUB-090814-14 Pouch at the end of the endolymphatic duct that helps regulates pressure on the inner ear. The endolymphatic sac is separated from the endolymphatic duct by a dynamic lamellar barrier. The lamellar barrier is composed of long, thin lamellar sheets that form tongue-and-groove structure or interwoven broadly overlapping structures. In adults, the endolymphatic duct and sac are partially encased within the temporal bone such that the distal end of the endolymphatic sac protrudes out of the temporal bone into the cranial cavity . 2019-04-16T14:25:54Z TAO:0002194 zebrafish_anatomy ZFA:0005912 endolymphatic sac ZFA:0005912 Pouch at the end of the endolymphatic duct that helps regulates pressure on the inner ear. The endolymphatic sac is separated from the endolymphatic duct by a dynamic lamellar barrier. The lamellar barrier is composed of long, thin lamellar sheets that form tongue-and-groove structure or interwoven broadly overlapping structures. In adults, the endolymphatic duct and sac are partially encased within the temporal bone such that the distal end of the endolymphatic sac protrudes out of the temporal bone into the cranial cavity . GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180622-24 Organism substance that is the output of the nephron. 2019-05-02T16:21:42Z zebrafish_anatomy ZFA:0005913 urine ZFA:0005913 Organism substance that is the output of the nephron. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-050818-17 Iridophore layer of iris composed of a outer layer of regularly tiled iridophores and an inner layer of randomly arranged iridophores. The outer regularly tiled iridophores reflect blue green light. The light reflecting crystals in the iris iridophores are composed of anhydrous Beta-guanine. Ceri 2019-05-29T15:43:36Z argenta iridophore layer iris zebrafish_anatomy ZFA:0005914 argentum ZFA:0005914 Iridophore layer of iris composed of a outer layer of regularly tiled iridophores and an inner layer of randomly arranged iridophores. The outer regularly tiled iridophores reflect blue green light. The light reflecting crystals in the iris iridophores are composed of anhydrous Beta-guanine. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180822-3 argenta Layer of melanophores that are positioned behind the argenta. The melanophore layer absorbs unfocused light preventing it from reaching the retina. Ceri 2019-05-29T15:55:27Z zebrafish_anatomy ZFA:0005915 iris melanophore layer ZFA:0005915 Layer of melanophores that are positioned behind the argenta. The melanophore layer absorbs unfocused light preventing it from reaching the retina. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180822-3 Iridophore layer that forms along the dorsal region of the poster segment of the eye. The tapetum is formed by a single layer of Iridophores and is proximal to the photoreceptors and is located in the choroid. The tapetum reflects photons back to the photoreceptors if they were not initially absorbed by the photoreceptors. Ceri 2019-05-29T16:15:09Z zebrafish_anatomy tapetum cellulosum ZFA:0005916 tapetum lucidum ZFA:0005916 Iridophore layer that forms along the dorsal region of the poster segment of the eye. The tapetum is formed by a single layer of Iridophores and is proximal to the photoreceptors and is located in the choroid. The tapetum reflects photons back to the photoreceptors if they were not initially absorbed by the photoreceptors. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-180822-3 Neuromast where the paired hair cells are polarized along the anterior-posterior body axis. ceriv 2020-06-18T10:40:23Z zebrafish_anatomy anteroposterior oriented neuromast ZFA:0005917 anterior-posterior polarized neuromast ZFA:0005917 Neuromast where the paired hair cells are polarized along the anterior-posterior body axis. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-061205-16 Neuromast where the paired hair cells are polarized along the dorsal-ventral body axis. ceriv 2020-06-18T10:44:49Z zebrafish_anatomy dorsoventral oriented neuromast ZFA:0005918 dorsal-ventral polarized neuromast ZFA:0005918 Neuromast where the paired hair cells are polarized along the dorsal-ventral body axis. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-061205-16 Posterior lateral line neuromast where the paired hair cells are polarized along the dorsal-ventral body axis. Develops from the secondary lateral line primordium. ceriv 2020-06-18T10:46:54Z perpendicular posterior lateral line neuromast zebrafish_anatomy ZFA:0005919 dorsal-ventral polarized posterior lateral line neuromast ZFA:0005919 Posterior lateral line neuromast where the paired hair cells are polarized along the dorsal-ventral body axis. Develops from the secondary lateral line primordium. GOC:CVS ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040916-1 perpendicular posterior lateral line neuromast ZFIN:ZDB-PUB-040916-1 Posterior lateral line neuromast where the paired hair cells are polarized along the anterior-posterior body axis. Deposited by the primary lateral line primordium. ceriv 2020-06-18T10:53:53Z zebrafish_anatomy parallel posterior lateral line neuromast ZFA:0005920 anterior-posterior polarized posterior lateral line neuromast ZFA:0005920 Posterior lateral line neuromast where the paired hair cells are polarized along the anterior-posterior body axis. Deposited by the primary lateral line primordium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040916-1 parallel posterior lateral line neuromast ZFIN:ZDB-PUB-040916-1 Muscle precursor cells that delaminate from the dermomyotome after epithelial-to-mesenchymal transition (EMT) and undergo long-range migration while retaining proliferative capacity. 2020-07-01T10:51:34Z migratory mesenchymal precursor zebrafish_anatomy MMP ZFA:0005921 migratory muscle precursor ZFA:0005921 Muscle precursor cells that delaminate from the dermomyotome after epithelial-to-mesenchymal transition (EMT) and undergo long-range migration while retaining proliferative capacity. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-001205-1 ZFIN:ZDB-PUB-200701-39 migratory mesenchymal precursor ZFIN:ZDB-PUB-001205-1 Groups of migratory muscle precursor that migrate from a conserved origination in concerted manner along stereotyped path. ceriv 2020-07-01T11:06:26Z zebrafish_anatomy ZFA:0005922 migratory muscle precursor stream ZFA:0005922 Groups of migratory muscle precursor that migrate from a conserved origination in concerted manner along stereotyped path. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040908-9 Muscle precursor stream that originates from the ventral regions of somites 1-3 and migrates anterior of the pectoral fin bud. Migratory muscle precursor from this stream form the esophageal striated muscle and sternohyoid. ceriv 2020-07-01T11:10:27Z zebrafish_anatomy first migratory stream ZFA:0005923 anterior migratory muscle precursor stream ZFA:0005923 Muscle precursor stream that originates from the ventral regions of somites 1-3 and migrates anterior of the pectoral fin bud. Migratory muscle precursor from this stream form the esophageal striated muscle and sternohyoid. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040908-9 ZFIN:ZDB-PUB-130709-61 Muscle precursor stream that originates from the ventral regions of somites 2-4 and migrates toward the pectoral fin bud. Migratory muscle precursors from this stream contribute to the pectoral fin musculature and make a small contribution to the posterior hypaxial muscle. ceriv 2020-07-01T11:14:03Z zebrafish_anatomy middle migratory muscle precursor stream ZFA:0005924 middle migratory muscle precursor stream ZFA:0005924 Muscle precursor stream that originates from the ventral regions of somites 2-4 and migrates toward the pectoral fin bud. Migratory muscle precursors from this stream contribute to the pectoral fin musculature and make a small contribution to the posterior hypaxial muscle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040908-9 ZFIN:ZDB-PUB-190808-2 Migratory muscle precursor stream that originates from the ventral regions of somites 5-7 that migrates posterior to the pectoral fin bud. Migratory muscle precursors from this stream form the posterior hypaxial muscle. ceriv 2020-07-01T11:17:29Z zebrafish_anatomy third migratory stream ZFA:0005925 posterior migratory muscle precursor stream ZFA:0005925 Migratory muscle precursor stream that originates from the ventral regions of somites 5-7 that migrates posterior to the pectoral fin bud. Migratory muscle precursors from this stream form the posterior hypaxial muscle. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040908-9 ZFIN:ZDB-PUB-190427-4 The posterior hypaxial muscle is an early-forming ventral body wall muscle, located immediately posterior to the fin and positioned like a chest muscle. Migratory muscle precursor from somites 4-7 using the middle and posterior stream contribute to the PHM. Stabilizes the sternohyoid during suction feeding. Insertion point is on the cleithrum. ceriv 2020-07-01T11:21:03Z inferior obliquus muscle anterior hypaxial muscle ventral-most hypaxial muscle zebrafish_anatomy PHM ZFA:0005926 posterior hypaxial muscle ZFA:0005926 The posterior hypaxial muscle is an early-forming ventral body wall muscle, located immediately posterior to the fin and positioned like a chest muscle. Migratory muscle precursor from somites 4-7 using the middle and posterior stream contribute to the PHM. Stabilizes the sternohyoid during suction feeding. Insertion point is on the cleithrum. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-040908-9 ZFIN:ZDB-PUB-190427-4 ZFIN:ZDB-PUB-200701-39 inferior obliquus muscle ZFIN:ZDB-PUB-020913-1 anterior hypaxial muscle ZFIN:ZDB-PUB-050318-5 ventral-most hypaxial muscle ZFIN:ZDB-PUB-010924-1 Blood vessel endothelium that restricts the passage of circulating substances from the blood to the brain parenchyma while actively facilitating the passage of nutrients and removal of waste products. The developing blood brain barrier undergoes a period of transcytosis and leaks that decrease as the mature form is established. The barrier matures in a posterior to anterior direction. 2020-07-30T10:25:52Z zebrafish_anatomy ZFA:0005927 endothelial blood brain barrier ZFA:0005927 Blood vessel endothelium that restricts the passage of circulating substances from the blood to the brain parenchyma while actively facilitating the passage of nutrients and removal of waste products. The developing blood brain barrier undergoes a period of transcytosis and leaks that decrease as the mature form is established. The barrier matures in a posterior to anterior direction. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-190821-6 Lecophores that develop from melanophores. Melanoleucophore are located at the margin of the dorsal fin, in the dorsal and ventral lobes of the caudal fin. Melanoleucophores lack pterdines and carotenoids; exhibited variably shaped organelles distinct from iridophore reflecting platelets and melanosomes and have crystalline Beta-guanine. Melanoleucophores express tyrosinase related protein 1b and purine nucleoside phosphorylase 4a. Immature cells may contain melanin. 2020-11-04T13:46:59Z zebrafish_anatomy ZFA:0005928 melanoleucophore ZFA:0005928 Lecophores that develop from melanophores. Melanoleucophore are located at the margin of the dorsal fin, in the dorsal and ventral lobes of the caudal fin. Melanoleucophores lack pterdines and carotenoids; exhibited variably shaped organelles distinct from iridophore reflecting platelets and melanosomes and have crystalline Beta-guanine. Melanoleucophores express tyrosinase related protein 1b and purine nucleoside phosphorylase 4a. Immature cells may contain melanin. GOC:cvs GOC:st ORCID:0000-0002-2244-7917 ORCID:0000-0002-4142-7153 ZFIN:ZDB-PUB-190530-2 Lecophores that develops from xanthophores. Xantholeucophores are located on the anal fin. Xantholeucophores contain round organelles carotenoid vesicles containing yellow/orange pigment as well as irregular organelles indistinguishable from pterinosomes, which contain yellow or colorless pteridines. During development white pigmentation surrounds a yellow-orange center, gradually increasing until whole cell appears white. Xantholeucophore express aldehyde oxidase 5 and purine nucleoside phosphorylase 4a. These cells most closely resemble the leucophores of other teleost. ceriv 2020-11-04T14:18:50Z zebrafish_anatomy ZFA:0005929 ZDB-PUB-190912-11 mentions that on the 8th day of development Yellow EL xanthophores gradually fade from view, entering a cryptic state. These same progenitors contribute to adult melanophores (black cell) and at least some xanthophores (orange cell). Additionally, some embryonic/EL melanophores persist into the adult stage (brown cell), and EL xanthophores lose their pigment, entering a cryptic phase (light yellow cell), and then reacquire pigment at a late stage of adult pattern development. xantholeucophore ZFA:0005929 Lecophores that develops from xanthophores. Xantholeucophores are located on the anal fin. Xantholeucophores contain round organelles carotenoid vesicles containing yellow/orange pigment as well as irregular organelles indistinguishable from pterinosomes, which contain yellow or colorless pteridines. During development white pigmentation surrounds a yellow-orange center, gradually increasing until whole cell appears white. Xantholeucophore express aldehyde oxidase 5 and purine nucleoside phosphorylase 4a. These cells most closely resemble the leucophores of other teleost. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-190530-2 Anatomical space within a tubular organ, duct, or vessel. 2020-11-20T13:39:11Z zebrafish_anatomy ZFA:0005930 lumen ZFA:0005930 Anatomical space within a tubular organ, duct, or vessel. GOC:cvs ORCID:0000-0002-2244-7917 https:en.org/wiki/Lumen_(anatomy) Nonhierarchical network of interconnected vessels. May be the primitive state of a mature vascular structure. ceriv 2020-11-20T14:12:43Z zebrafish_anatomy ZFA:0005931 vascular plexus ZFA:0005931 Nonhierarchical network of interconnected vessels. May be the primitive state of a mature vascular structure. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-150418-3 Transient plexus formed by vasculogenesis that results in the formation of an intermediate network of similar sized vessels with polygonal-shaped avascular spaces. As the vasculature matures it is remodeled into a hierarchical vascular tree. ceriv 2020-11-20T14:29:48Z zebrafish_anatomy ZFA:0005932 developmental vascular plexus ZFA:0005932 Transient plexus formed by vasculogenesis that results in the formation of an intermediate network of similar sized vessels with polygonal-shaped avascular spaces. As the vasculature matures it is remodeled into a hierarchical vascular tree. GOC:cvs ORCID:0000-0002-2244-7917 PMID:23799579 ZFIN:ZDB-PUB-150418-3 Stable vascular plexus that persist in the adult animal. ceriv 2020-11-20T14:32:44Z capillary plexus mature vascular plexus zebrafish_anatomy ZFA:0005933 mature plexus ZFA:0005933 Stable vascular plexus that persist in the adult animal. GOC:cvs ORCID:0000-0002-2244-7917 PMID:23799579 ZFIN:ZDB-PUB-150418-3 Non stereotyped venous plexus derived from specialised angioblast that originate in the floor of the posterior cardinal vein. Emerges from the duct of Cuvier at 2dpf as a reticular structure that spreads bilaterally over the surface of the yolk and gut. ceriv 2020-11-20T14:35:56Z subintestinal plexus zebrafish_anatomy ZFA:0005934 subintestinal venous plexus ZFA:0005934 Non stereotyped venous plexus derived from specialised angioblast that originate in the floor of the posterior cardinal vein. Emerges from the duct of Cuvier at 2dpf as a reticular structure that spreads bilaterally over the surface of the yolk and gut. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-150418-3 ZFIN:ZDB-PUB-151021-20 ZFIN:ZDB-PUB-151104-9 Subintestinal venous plexus that wraps the yolk. Anterior vessels connected to both the left and right subintestinal vein drain into the liver. These vessels are reabsorbed after the yolk is depleted. ceriv 2020-11-20T14:41:40Z zebrafish_anatomy yolk plexus ZFA:0005935 superficial subintestinal venous plexus ZFA:0005935 Subintestinal venous plexus that wraps the yolk. Anterior vessels connected to both the left and right subintestinal vein drain into the liver. These vessels are reabsorbed after the yolk is depleted. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-150418-3 Plexus that wraps the anterior digestive system. These vessels form the permanent, superficial vessels of the digestive system. The left subintestinal vein regresses and empties into the right subintestinal vein. ceriv 2020-11-20T14:43:36Z zebrafish_anatomy ZFA:0005936 deep subintestinal venous plexus ZFA:0005936 Plexus that wraps the anterior digestive system. These vessels form the permanent, superficial vessels of the digestive system. The left subintestinal vein regresses and empties into the right subintestinal vein. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-151021-20 Vessels that form connections between the sub intestinal vein and the supraintestinal artery. There are fewer ICVs on the right side of the fish due to the asymmetrical development of the subintestinal veins. ceriv 2020-11-20T15:14:22Z zebrafish_anatomy ICV ZFA:0005937 interconnecting vessels ZFA:0005937 Vessels that form connections between the sub intestinal vein and the supraintestinal artery. There are fewer ICVs on the right side of the fish due to the asymmetrical development of the subintestinal veins. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-151104-9 Blood vessel that bridge between organs. 2020-12-02T09:24:58Z zebrafish_anatomy ZFA:0005938 inter-organ blood vessel ZFA:0005938 Blood vessel that bridge between organs. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-130710-65 Blood vessels that bridge between the liver and pancreas. Four of these vessels have been described, called V1 LP-V4LP. The vessels may be transient or permanent and may make direct or indirect connections between the organ vasculature. ceriv 2020-12-02T09:30:41Z zebrafish_anatomy ZFA:0005939 liver pancreas connecting vessel ZFA:0005939 Blood vessels that bridge between the liver and pancreas. Four of these vessels have been described, called V1 LP-V4LP. The vessels may be transient or permanent and may make direct or indirect connections between the organ vasculature. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-130710-65 Temporary regenerating structure composed of chondrocytes and fibroblast that stabilizes the bone ends at a fracture site. The fibrocartilagionous callus surrounds the bone ends. 2021-01-27T10:34:06Z zebrafish_anatomy ZFA:0005940 fibrocartilaginous callus ZFA:0005940 Temporary regenerating structure composed of chondrocytes and fibroblast that stabilizes the bone ends at a fracture site. The fibrocartilagionous callus surrounds the bone ends. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-190807-16 Temporary regenerating structure wider than the original bone composed of osteoblast and mineralized tissue that replaces the fibrocartilagenous callus at a bone fracture site. The bone callus is eventually remodeled to be the width of the surrounding bone. ceriv 2021-01-27T10:38:07Z zebrafish_anatomy ZFA:0005941 bone callus ZFA:0005941 Temporary regenerating structure wider than the original bone composed of osteoblast and mineralized tissue that replaces the fibrocartilagenous callus at a bone fracture site. The bone callus is eventually remodeled to be the width of the surrounding bone. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-190807-16 Enterocytes that possess a large supranuclear vacuolar system that preferentially internalize dietary protein via receptor-mediated and fluid-phase endocytosis for intracellular digestion and trans-cellular transport. In zebrafish these cells are located in the posterior region of the mid intestine throughout life. In mammals they are found in the ileum pre-weaning and later are replaced by mature enterocytes . ceriv 2021-01-27T10:44:40Z zebrafish_anatomy ZFA:0005942 lysosome-rich enterocyte ZFA:0005942 Enterocytes that possess a large supranuclear vacuolar system that preferentially internalize dietary protein via receptor-mediated and fluid-phase endocytosis for intracellular digestion and trans-cellular transport. In zebrafish these cells are located in the posterior region of the mid intestine throughout life. In mammals they are found in the ileum pre-weaning and later are replaced by mature enterocytes . GOC:cvs ORCID:0000-0002-1009-339X ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-190903-3 Extraembryonic fluid that fills the space between the embryo and the chorion. Provides mechanical cushion, defense from pathogens and helps maintain osmotic balance. ceriv 2021-03-25T15:52:05Z zebrafish_anatomy ZFA:0005943 perivitelline fluid ZFA:0005943 Extraembryonic fluid that fills the space between the embryo and the chorion. Provides mechanical cushion, defense from pathogens and helps maintain osmotic balance. ZFIN:ZDB-PUB-200910-2 Cells that localize on the abluminal side of the vascular endothelium that regulate vessel stability and function. Mural cells are categorized into vascular smooth muscle cells or pericytes. ceriv 2021-01-27T11:37:04Z CL:0008034 zebrafish_anatomy ZFA:0005944 mural cell ZFA:0005944 Cells that localize on the abluminal side of the vascular endothelium that regulate vessel stability and function. Mural cells are categorized into vascular smooth muscle cells or pericytes. ORCID:0000-0002-2244-7917 ORCID:0000-0002-4142-7153 ZFIN:ZDB-PUB-190116-4 Retinal cone cell with a long outer segment that form pairs with the short double cone cell as part of the retinal cone mosaic pattern. The long double cone cell is positioned immediately adjacent to the long single cone cell and is sensitive to red light. The double cone cells have membrane projections at the level of the lobed nucleus. 2021-07-09T09:06:25Z red-sensitive cone cell zebrafish_anatomy unequal double cone cell ZFA:0005945 long double cone cell ZFA:0005945 Retinal cone cell with a long outer segment that form pairs with the short double cone cell as part of the retinal cone mosaic pattern. The long double cone cell is positioned immediately adjacent to the long single cone cell and is sensitive to red light. The double cone cells have membrane projections at the level of the lobed nucleus. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-677 ZFIN:ZDB-PUB-990520-1 goc:cvs red-sensitive cone cell ZFIN:ZDB-PUB-990520-1 unequal double cone cell ZFIN:ZDB-PUB-961014-677 Retinal cone cell with a shorter outer segment that form pairs with the long double cone cell as part of the retinal cone mosaic pattern. The short double cone cell is positioned immediately adjacent to the short single cone cell and is sensitive to green light. The double cone cells have membrane projections at the level of the lobed nucleus. ceriv 2021-07-09T10:53:10Z green-sensitive cone zebrafish_anatomy unequal double cone cell ZFA:0005946 short double cone cell ZFA:0005946 Retinal cone cell with a shorter outer segment that form pairs with the long double cone cell as part of the retinal cone mosaic pattern. The short double cone cell is positioned immediately adjacent to the short single cone cell and is sensitive to green light. The double cone cells have membrane projections at the level of the lobed nucleus. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-677 ZFIN:ZDB-PUB-990520-1 goc:cvs green-sensitive cone ZFIN:ZDB-PUB-990520-1 unequal double cone cell ZFIN:ZDB-PUB-961014-677 Retinal cone cell with a long outer segment. The long single cone cells are sensitive to blue light and are flanked by the long double cone cells. ceriv 2021-07-09T11:01:04Z blue-sensitive cone cell zebrafish_anatomy ZFA:0005947 long single cone cell ZFA:0005947 Retinal cone cell with a long outer segment. The long single cone cells are sensitive to blue light and are flanked by the long double cone cells. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-677 ZFIN:ZDB-PUB-990520-1 goc:cvs blue-sensitive cone cell ZFIN:ZDB-PUB-990520-1 Retinal cone cell with the shortest outer segment that is located below the outer segments of the adjacent double cone cells. The short single cone cell is sensitive to UV light and has pronounced endoplasmic reticulum in electron micrographs. ceriv 2021-07-09T11:10:25Z UV-sensitive cone ultraviolet-sensitive cone zebrafish_anatomy ZFA:0005948 short single cone cell ZFA:0005948 Retinal cone cell with the shortest outer segment that is located below the outer segments of the adjacent double cone cells. The short single cone cell is sensitive to UV light and has pronounced endoplasmic reticulum in electron micrographs. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-677 ZFIN:ZDB-PUB-990520-1 goc:cvs UV-sensitive cone ZFIN:ZDB-PUB-990520-1 Lymph vessel located in the heart. 2021-08-13T11:47:35Z zebrafish_anatomy ZFA:0005949 heart lymph vessel ZFA:0005949 Lymph vessel located in the heart. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-191110-11 Lymph vessel located in the bulbus arteriosus (outflow tract). These vessels develop from the facial lymphatic vessels and their appearance correlates with the larval to juvenile transition. ceriv 2021-08-13T11:53:55Z outflow tract lymph vessel zebrafish_anatomy ZFA:0005950 bulbus arteriosus lymph vessel ZFA:0005950 Lymph vessel located in the bulbus arteriosus (outflow tract). These vessels develop from the facial lymphatic vessels and their appearance correlates with the larval to juvenile transition. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-191110-11 Lymph vessel located in the cardiac ventricle. The ventricular lymph vessels develop from the bulbus arteriosus lymph vessels and sprout in close proximity to the ventricular blood vessels. ceriv 2021-08-13T11:58:24Z zebrafish_anatomy ZFA:0005951 cardiac ventricle lymph vessel ZFA:0005951 Lymph vessel located in the cardiac ventricle. The ventricular lymph vessels develop from the bulbus arteriosus lymph vessels and sprout in close proximity to the ventricular blood vessels. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-191110-11 Lymphatic system of the heart. ceriv 2021-08-13T12:23:44Z zebrafish_anatomy ZFA:0005952 heart lymphatic system ZFA:0005952 Lymphatic system of the heart. GOC:CVS ORCID:0000-0002-2244-7917 Capillary plexus that is located in the heart. ceriv 2021-08-13T12:26:17Z zebrafish_anatomy ZFA:0005953 coronary capillary plexus ZFA:0005953 Capillary plexus that is located in the heart. GOC:cvs ORCID:0000-0002-2244-7917 Group of lymphatic cells in the heart that form independently of sprouting lymphangiogenesis. These cells appear as single cells that may expand into isolated lymph vessels as development progresses with no connection to the coronary capillary plexus or the lymphatic network. ceriv 2021-08-13T12:30:04Z isolated lymph endothelial cells zebrafish_anatomy ZFA:0005954 cardiac lymphatic endothelial cluster ZFA:0005954 Group of lymphatic cells in the heart that form independently of sprouting lymphangiogenesis. These cells appear as single cells that may expand into isolated lymph vessels as development progresses with no connection to the coronary capillary plexus or the lymphatic network. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-191110-11 Group of lymphatic endothelial cells that is separate from the lymphatic vasculature. These clusters may serve as repositories for lymphatic progenitors in case of tissue damage. ceriv 2021-08-13T12:53:02Z zebrafish_anatomy ZFA:0005955 lymphatic endothelial cluster ZFA:0005955 Group of lymphatic endothelial cells that is separate from the lymphatic vasculature. These clusters may serve as repositories for lymphatic progenitors in case of tissue damage. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-191110-11 A stem cell that can give rise to cell types of the germ-line. ceriv 2021-08-13T13:44:39Z CL:0000014 zebrafish_anatomy ZFA:0005956 germline stem cell ZFA:0005956 A stem cell that can give rise to cell types of the germ-line. ORCID:0000-0002-4142-7153 A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. ceriv 2021-08-13T13:47:16Z CL:0000034 zebrafish_anatomy ZFA:0005957 stem cell ZFA:0005957 A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. GOC:tfm The cartilage which make up the anterior neurocranium that forms the roof of the oral cavity during pharyngeal and early larval stages. This cluster is used to model the mammalian palate. ceriv 2023-06-09T09:20:28Z zebrafish_anatomy ZFA:0005958 early palate ZFA:0005958 The cartilage which make up the anterior neurocranium that forms the roof of the oral cavity during pharyngeal and early larval stages. This cluster is used to model the mammalian palate. GOC:CVS ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-151122-6 Vertebrae that are posterior to the preural vertebrae. There is disagreement whether the diural interpretation or polyural interpretation of the caudal skeleton is what is observed in zebrafish. These two interpretations lead to differences in counting the ural vertebrae. Diural interpretations consider the basic bauplan of the caudal fin to be composed of an anterior centrum (preural centrum 1 + ural centrum 1) supporting the parhypural and hypurals 1 and 2 and a posterior centrum supporting hypurals 3 -5 or 3-6 with variations in hypural number due to fusion or loss. From the polyural perspective, the teleost caudal fin is considered an evolutionary derivation of a fully metameristic caudal fin in which each hypural is supported by a single ural centrum with its own neural arch. zfinf 2024-08-15T12:42:50Z zebrafish_anatomy ZFA:0005959 ural vertebra ZFA:0005959 Vertebrae that are posterior to the preural vertebrae. There is disagreement whether the diural interpretation or polyural interpretation of the caudal skeleton is what is observed in zebrafish. These two interpretations lead to differences in counting the ural vertebrae. Diural interpretations consider the basic bauplan of the caudal fin to be composed of an anterior centrum (preural centrum 1 + ural centrum 1) supporting the parhypural and hypurals 1 and 2 and a posterior centrum supporting hypurals 3 -5 or 3-6 with variations in hypural number due to fusion or loss. From the polyural perspective, the teleost caudal fin is considered an evolutionary derivation of a fully metameristic caudal fin in which each hypural is supported by a single ural centrum with its own neural arch. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-011008-1 ZFIN:ZDB-PUB-020807-1 ZFIN:ZDB-PUB-031103-13 ZFIN:ZDB-PUB-170304-9 Gap between hypural two and three separating the upper and lower lobes of the caudal fin. zfinf 2024-08-15T14:56:17Z zebrafish_anatomy ZFA:0005960 hypural diastema ZFA:0005960 Gap between hypural two and three separating the upper and lower lobes of the caudal fin. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-240120-4 A specialized cartilaginous structure derived from the notochordal sheath that covers the posterior end of the notochord. zfinf 2024-08-15T15:09:45Z zebrafish_anatomy ZFA:0005961 opisthural cartilage ZFA:0005961 A specialized cartilaginous structure derived from the notochordal sheath that covers the posterior end of the notochord. ORCID:0000-0002-2244-7917 Ionocytes associated with neuromasts. Nm ionocytes are not present at the time of neuromast deposition, and are derived from basal keratinocytes surrounding neuromasts. Nm ionocyte progenitors migrate into neuromasts as pairs of cells. The invasion process is triggered in response to changing environmental stimuli such as salinity and pH. zfinf 2024-08-15T15:20:01Z zebrafish_anatomy ZFA:0005962 neuromast-associated ionocyte ZFA:0005962 Ionocytes associated with neuromasts. Nm ionocytes are not present at the time of neuromast deposition, and are derived from basal keratinocytes surrounding neuromasts. Nm ionocyte progenitors migrate into neuromasts as pairs of cells. The invasion process is triggered in response to changing environmental stimuli such as salinity and pH. ORCID:0000-0002-1009-339X ZFIN:ZDB-PUB-210421-6. Large pear-shaped dopaminergic neuron that ascend from the ventral diencephalon group DC2 to the telencephalon. These neurons may be the correlate of mammalian substantia nigra (SNc) neurons. DC2 neurons are located rostrally and their processes project laterally. zfinf 2024-08-15T15:39:04Z zebrafish_anatomy ZFA:0005963 DC2 dopaminergic neuron ZFA:0005963 Large pear-shaped dopaminergic neuron that ascend from the ventral diencephalon group DC2 to the telencephalon. These neurons may be the correlate of mammalian substantia nigra (SNc) neurons. DC2 neurons are located rostrally and their processes project laterally. ORCID:0000-0002-1009-339X ZFIN:ZDB-PUB-001220-2 ZFIN:ZDB-PUB-020730-6 ZFIN:ZDB-PUB-110131-27 ZFIN:ZDB-PUB-210319-11 Large pear-shaped dopaminergic neuron that ascend from the posterior tuberculum to the subpallium. These neurons may be the correlate of mammalian substantia nigra (SNc) neurons. DC4 neurons are located caudally and their processes projected dorsolaterally. zfinf 2024-08-15T15:42:05Z zebrafish_anatomy ZFA:0005964 DC4 dopaminergic neuron ZFA:0005964 Large pear-shaped dopaminergic neuron that ascend from the posterior tuberculum to the subpallium. These neurons may be the correlate of mammalian substantia nigra (SNc) neurons. DC4 neurons are located caudally and their processes projected dorsolaterally. ORCID:0000-0002-1009-339X ZFIN:ZDB-PUB-001220-2 ZFIN:ZDB-PUB-020730-6 ZFIN:ZDB-PUB-110131-27 ZFIN:ZDB-PUB-210319-11 Hair cell that is located in the macula and cristae along the central area of polarity reversal where hair cell change their stereocilia orientation. The kinocilium and tallest stereocilium are roughly equal in height when the cells are mature. These cells carry high-pass signals which are predominantly relayed by irregular-firing vestibular afferents with phasic kinetics. zfinf 2024-08-28T16:48:03Z zebrafish_anatomy ZFA:0005965 striolar hair cell ZFA:0005965 Hair cell that is located in the macula and cristae along the central area of polarity reversal where hair cell change their stereocilia orientation. The kinocilium and tallest stereocilium are roughly equal in height when the cells are mature. These cells carry high-pass signals which are predominantly relayed by irregular-firing vestibular afferents with phasic kinetics. GOC:cvs ORCID:0000-0002-1009-339X ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-220829-1 ZFIN:ZDB-PUB-230105-1 Hair cell that is located in the macula and cristae surrounding the central area of polarity reversal where hair cell change their stereocilia orientation. The kinocilium and tallest stereocilium are unequal in height when the cells are mature. Extrastriolar hair cells excite predominantly regular-firing vestibular afferents with tonic or phasic-tonic dynamic. zfinf 2024-08-28T17:10:48Z zebrafish_anatomy ZFA:0005966 extrastriolar hair cell ZFA:0005966 Hair cell that is located in the macula and cristae surrounding the central area of polarity reversal where hair cell change their stereocilia orientation. The kinocilium and tallest stereocilium are unequal in height when the cells are mature. Extrastriolar hair cells excite predominantly regular-firing vestibular afferents with tonic or phasic-tonic dynamic. GOC:cvs ORCID:0000-0002-1009-339X ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-220829-1 ZFIN:ZDB-PUB-230105-1 An epithelial structure located anterior to the gill filaments and connected to the eye via the ophthalmic artery. It arises from mandibular arch neural crest-derived mesenchyme and first pouch endodermal epithelia. The pseudobranch appears as a small bud behind the eye at 4dpf. At 17 dpf, the pseudobranch is composed of five distinct filaments that resemble the primary gill filaments, with the five filaments merging to form a single pseudobranch by adult stages (90 dpf). The pseudobranch is not exposed to the outside environment unlike the gills. The pseudobranch may regulate ocular blood pressure and/or have an endocrine function. zfinf 2024-09-20T07:10:16Z zebrafish_anatomy ZFA:0005967 pseudobranch ZFA:0005967 An epithelial structure located anterior to the gill filaments and connected to the eye via the ophthalmic artery. It arises from mandibular arch neural crest-derived mesenchyme and first pouch endodermal epithelia. The pseudobranch appears as a small bud behind the eye at 4dpf. At 17 dpf, the pseudobranch is composed of five distinct filaments that resemble the primary gill filaments, with the five filaments merging to form a single pseudobranch by adult stages (90 dpf). The pseudobranch is not exposed to the outside environment unlike the gills. The pseudobranch may regulate ocular blood pressure and/or have an endocrine function. ORCID:0000-0002-1009-339X ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-080722-8 ZFIN:ZDB-PUB-220629-5 Pseudobranch cells are epithelial cells characterized by apical localization of the enzyme Na + /K + -ATPase and an extensive cytoplasmic tubular network. zfinf 2024-09-20T07:14:56Z zebrafish_anatomy ZFA:0005968 pseudobranch cell ZFA:0005968 Pseudobranch cells are epithelial cells characterized by apical localization of the enzyme Na + /K + -ATPase and an extensive cytoplasmic tubular network. ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-080722-8 Descending interneurons that are the most ventrally positioned in the spinal cord. The cell body are ventral to the level of the Mauthner axon. The cell body is positioned medial to the central canal but do not contact it differentiating them from KA cells. There are multiple VeMe cells in each segment and they are mulitipolar with elaborate local branching. These neurons are glutamatergic. zfinf 2024-10-25T12:53:16Z ventral medial interneuron zebrafish_anatomy V3 interneuron ZFA:0005969 VeMe ZFA:0005969 Descending interneurons that are the most ventrally positioned in the spinal cord. The cell body are ventral to the level of the Mauthner axon. The cell body is positioned medial to the central canal but do not contact it differentiating them from KA cells. There are multiple VeMe cells in each segment and they are mulitipolar with elaborate local branching. These neurons are glutamatergic. ORCID:0000-0002-2244-7917 ORCID:0000-0002-7496-2937 ZFIN:ZDB-PUB-010807-17 ZFIN:ZDB-PUB-220202-37 ventral medial interneuron ZFIN:ZDB-PUB-010807-17 V3 interneuron ZFIN:ZDB-PUB-230515-30 Lymphatic endothelial cells located in the meningeal layer of the brain. They are derived from venous vascular endothelium and can be found associated with meningeal blood vessels. zfinf 2024-10-25T13:23:05Z fluorescent granular perithelial cell mural lymphatic endothelial cell zebrafish_anatomy FGP ZFA:0005970 brain lymphatic endothelial cell ZFA:0005970 Lymphatic endothelial cells located in the meningeal layer of the brain. They are derived from venous vascular endothelium and can be found associated with meningeal blood vessels. ORCID:0000-0002-1009-339X ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-170412-9 ZFIN:ZDB-PUB-170502-5 ZFIN:ZDB-PUB-170513-1 ZFIN:ZDB-PUB-210907-11 fluorescent granular perithelial cell ZFIN:ZDB-PUB-170412-9 mural lymphatic endothelial cell ZFIN:ZDB-PUB-170502-5 FGP ZFIN:ZDB-PUB-170412-9 Glial cell that restricts CNS-residing myelinating glia from entering the PNS. MEP glia originate from within the CNS, then migrate into the PNS, divide and produce cells that ensheath and myelinate spinal motor root axons. zfinf 2024-10-28T16:11:46Z MEP glia zebrafish_anatomy ZFA:0005971 motor exit point glia ZFA:0005971 Glial cell that restricts CNS-residing myelinating glia from entering the PNS. MEP glia originate from within the CNS, then migrate into the PNS, divide and produce cells that ensheath and myelinate spinal motor root axons. ORCID:0000-0002-1009-339X ZFIN:ZDB-PUB-141001-1 ZFIN:ZDB-PUB-181026-18 Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe. giles 2009-03-26T02:23:30Z TAO:0006000 Hi zebrafish_anatomy ZFA:0006000 intermediate hypothalamus ZFA:0006000 Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe. ZFIN:ZDB-PUB-001018-1 ZFIN:ZDB-PUB-020730-6 ZFIN:ZDB-PUB-081114-19 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula saccule senses linear acceleration and gravity. In juveniles the macula saccule is oriented vertically in a plane running along the anterioposterior body axis. It covers the medial wall of the saccule along most of its length. TAO:0007000 saccular macula zebrafish_anatomy ZFA:0007000 macula saccule ZFA:0007000 Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula saccule senses linear acceleration and gravity. In juveniles the macula saccule is oriented vertically in a plane running along the anterioposterior body axis. It covers the medial wall of the saccule along most of its length. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-010912-7 Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). TAO:0007001 dorsal rostral cluster dorsorostral cluster drc zebrafish_anatomy ZFA:0007001 dorso-rostral cluster ZFA:0007001 Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-955 Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). TAO:0007002 ventral rostral cluster ventrorostral cluster vrc zebrafish_anatomy ZFA:0007002 ventro-rostral cluster ZFA:0007002 Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-955 Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). TAO:0007003 vcc ventral caudal cluster ventrocaudal cluster zebrafish_anatomy ZFA:0007003 ventro-caudal cluster ZFA:0007003 Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-955 Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. TAO:0007004 ec zebrafish_anatomy ZFA:0007004 epiphyseal cluster ZFA:0007004 Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-955 Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygapophyses. ZFA:0001380 TAO:0007005 haemal prezygapophysis hemal prezygopophysis zebrafish_anatomy ZFA:0007005 hemal prezygapophysis ZFA:0007005 Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygapophyses. GOC:ymb ORCiD:0000-0002-9900-7880 Surface structure that is one of the fleshy folds surrounding the opening of the mouth. TAO:0007006 lips zebrafish_anatomy ZFA:0007006 lip ZFA:0007006 Surface structure that is one of the fleshy folds surrounding the opening of the mouth. GOC:ymb ORCiD:0000-0002-9900-7880 http://www.medterms.com/script/main/art.asp?articlekey=9458 lips true ZFA:0007007 Is a mandibular muscle that attaches to Meckel's cartilage and functions during jaw closing. TAO:0007008 intermandibularis anterior ventral intermandibulari anterior zebrafish_anatomy ZFA:0007008 ventral intermandibularis anterior ZFA:0007008 Is a mandibular muscle that attaches to Meckel's cartilage and functions during jaw closing. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 ZFIN:ZDB-PUB-061010-9 ventral intermandibulari anterior A portion of tissue which is a fasciculated group of axons. Many time axons in the nerve are enveloped by the glial cells of the peripheral nervous system, the Schwann cells. TAO:0007009 nerves zebrafish_anatomy ZFA:0007009 nerve ZFA:0007009 A portion of tissue which is a fasciculated group of axons. Many time axons in the nerve are enveloped by the glial cells of the peripheral nervous system, the Schwann cells. GOC:ymb ISBN:0878937420 ORCiD:0000-0002-9900-7880 nerves Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development. TAO:0007010 eminentia thalami zebrafish_anatomy ZFA:0007010 thalamic eminence ZFA:0007010 Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-070711-1 Part of cranial nerve X. TAO:0007011 rX vagus root zebrafish_anatomy ZFA:0007011 vagal root ZFA:0007011 Part of cranial nerve X. GOC:cvs ORCiD:0000-0002-2244-7917 In the adult bilaterally paired compact tract located lateral to the medial forebrain bundle that extends to the diencephalon. Formed from several fascicles that originate in the precommissural telencephalon and converge rostrocaudally. In the seven day old fish bilaterally paired bundle that runs caudally from the anterior commissure to the forebrain. In the caudal diencephalon the bundle divides into two parts. The thinner part runs more laterally and ventrally, and the thicker part was located more medially and dorsally. Both bundles run in the caudal direction toward the cranial wall of the lateral recess of the diencephalic ventricle, where they apparently exchange some fibers. Then, they continue in the caudal direction, surrounding the lateral recess from the ventral and dorsal side, and meet close to the caudal wall of lateral recess at the level of the commissure of the posterior tuberculum. TAO:0007012 fasciculus lateralis telencephali lateral forebrain bundles zebrafish_anatomy ZFA:0007012 lateral forebrain bundle ZFA:0007012 In the adult bilaterally paired compact tract located lateral to the medial forebrain bundle that extends to the diencephalon. Formed from several fascicles that originate in the precommissural telencephalon and converge rostrocaudally. In the seven day old fish bilaterally paired bundle that runs caudally from the anterior commissure to the forebrain. In the caudal diencephalon the bundle divides into two parts. The thinner part runs more laterally and ventrally, and the thicker part was located more medially and dorsally. Both bundles run in the caudal direction toward the cranial wall of the lateral recess of the diencephalic ventricle, where they apparently exchange some fibers. Then, they continue in the caudal direction, surrounding the lateral recess from the ventral and dorsal side, and meet close to the caudal wall of lateral recess at the level of the commissure of the posterior tuberculum. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-051207-17 ZFIN:ZDB-PUB-961014-1280 fasciculus lateralis telencephali ZFIN:ZDB-PUB-961014-1280 lateral forebrain bundles Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes. TAO:0007013 panplacodal ectoderm zebrafish_anatomy ZFA:0007013 preplacodal ectoderm ZFA:0007013 Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes. GOC:ymb ORCiD:0000-0002-9900-7880 panplacodal ectoderm ZFIN:ZDB-PUB-070122-31 Rostral portion of embryonic tissue that gives rise to the anterior neural plate. TAO:0007014 zebrafish_anatomy ZFA:0007014 anterior presumptive neural plate ZFA:0007014 Rostral portion of embryonic tissue that gives rise to the anterior neural plate. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Caudal portion of embryonic tissue that gives rise to the posterior neural plate. TAO:0007015 zebrafish_anatomy ZFA:0007015 posterior presumptive neural plate ZFA:0007015 Caudal portion of embryonic tissue that gives rise to the posterior neural plate. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Rostral portion of the neural plate. Develops into the anterior neural keel. TAO:0007016 zebrafish_anatomy ZFA:0007016 anterior neural plate ZFA:0007016 Rostral portion of the neural plate. Develops into the anterior neural keel. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Posterior portion of the neural plate that gives rise to the posterior neural keel. TAO:0007017 zebrafish_anatomy ZFA:0007017 posterior neural plate ZFA:0007017 Posterior portion of the neural plate that gives rise to the posterior neural keel. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Anterior portion of anterior neural plate that gives rise to the forebrain neural keel. TAO:0007018 zebrafish_anatomy ZFA:0007018 forebrain neural plate ZFA:0007018 Anterior portion of anterior neural plate that gives rise to the forebrain neural keel. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural plate that gives rise to the midbrain neural keel. TAO:0007019 zebrafish_anatomy ZFA:0007019 midbrain neural plate ZFA:0007019 Portion of neural plate that gives rise to the midbrain neural keel. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of anterior neural plate that gives rise to the forebrain midbrain boundary neural keel. TAO:0007020 diencephalic-mesencephalic boundary neural plate zebrafish_anatomy ZFA:0007020 forebrain midbrain boundary neural plate ZFA:0007020 Portion of anterior neural plate that gives rise to the forebrain midbrain boundary neural keel. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of the posterior neural plate that gives rise to the spinal cord neural keel. TAO:0007021 zebrafish_anatomy ZFA:0007021 spinal cord neural plate ZFA:0007021 Portion of the posterior neural plate that gives rise to the spinal cord neural keel. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Portion of posterior neural plate that gives rise to the hindbrain neural keel. TAO:0007022 zebrafish_anatomy ZFA:0007022 hindbrain neural plate ZFA:0007022 Portion of posterior neural plate that gives rise to the hindbrain neural keel. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Posterior portion of the neural keel that gives rise to the posterior neural rod. TAO:0007023 zebrafish_anatomy ZFA:0007023 posterior neural keel ZFA:0007023 Posterior portion of the neural keel that gives rise to the posterior neural rod. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Rostral portion of the neural keel. Develops into the anterior neural rod. TAO:0007024 zebrafish_anatomy ZFA:0007024 anterior neural keel ZFA:0007024 Rostral portion of the neural keel. Develops into the anterior neural rod. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural keel that gives rise to the midbrain neural rod. TAO:0007025 zebrafish_anatomy ZFA:0007025 midbrain neural keel ZFA:0007025 Portion of neural keel that gives rise to the midbrain neural rod. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Anterior portion of anterior neural keel that gives rise to the forebrain neural rod. TAO:0007026 zebrafish_anatomy ZFA:0007026 forebrain neural keel ZFA:0007026 Anterior portion of anterior neural keel that gives rise to the forebrain neural rod. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of anterior neural keel that gives rise to the forebrain midbrain boundary neural rod. TAO:0007027 diencephalic-mesencephalic boundary neural keel zebrafish_anatomy ZFA:0007027 forebrain midbrain boundary neural keel ZFA:0007027 Portion of anterior neural keel that gives rise to the forebrain midbrain boundary neural rod. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of the posterior neural keel that gives rise to the spinal cord neural rod. TAO:0007028 zebrafish_anatomy ZFA:0007028 spinal cord neural keel ZFA:0007028 Portion of the posterior neural keel that gives rise to the spinal cord neural rod. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Portion of posterior neural keel that gives rise to the hindbrain neural rod. TAO:0007029 zebrafish_anatomy ZFA:0007029 hindbrain neural keel ZFA:0007029 Portion of posterior neural keel that gives rise to the hindbrain neural rod. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Posterior portion of the neural rod that gives rise to the posterior neural tube. TAO:0007030 zebrafish_anatomy ZFA:0007030 posterior neural rod ZFA:0007030 Posterior portion of the neural rod that gives rise to the posterior neural tube. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Rostral portion of the neural rod. Develops into the anterior neural tube. TAO:0007031 zebrafish_anatomy ZFA:0007031 anterior neural rod ZFA:0007031 Rostral portion of the neural rod. Develops into the anterior neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural rod that gives rise to the midbrain neural tube. TAO:0007032 zebrafish_anatomy ZFA:0007032 midbrain neural rod ZFA:0007032 Portion of neural rod that gives rise to the midbrain neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of anterior neural rod that gives rise to the forebrain midbrain boundary neural tube. TAO:0007033 diencephalic-mesencephalic boundary neural rod zebrafish_anatomy ZFA:0007033 forebrain midbrain boundary neural rod ZFA:0007033 Portion of anterior neural rod that gives rise to the forebrain midbrain boundary neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Anterior portion of anterior neural rod that gives rise to the forebrain neural tube. TAO:0007034 zebrafish_anatomy ZFA:0007034 forebrain neural rod ZFA:0007034 Anterior portion of anterior neural rod that gives rise to the forebrain neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of the posterior neural rod that gives rise to the spinal cord neural tube. TAO:0007035 zebrafish_anatomy ZFA:0007035 spinal cord neural rod ZFA:0007035 Portion of the posterior neural rod that gives rise to the spinal cord neural tube. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Portion of posterior neural rod that gives rise to the hindbrain neural tube. TAO:0007036 zebrafish_anatomy ZFA:0007036 hindbrain neural rod ZFA:0007036 Portion of posterior neural rod that gives rise to the hindbrain neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Posterior portion of the neural tube that gives rise to the hindbrain and spinal cord. TAO:0007037 zebrafish_anatomy ZFA:0007037 posterior neural tube ZFA:0007037 Posterior portion of the neural tube that gives rise to the hindbrain and spinal cord. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Rostral portion of the neural tube. TAO:0007038 zebrafish_anatomy ZFA:0007038 anterior neural tube ZFA:0007038 Rostral portion of the neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural tube that gives rise to the midbrain. TAO:0007039 zebrafish_anatomy ZFA:0007039 midbrain neural tube ZFA:0007039 Portion of neural tube that gives rise to the midbrain. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of anterior neural tube that gives rise to the forebrain midbrain boundary. TAO:0007040 diencephalic-mesencephalic boundary neural tube zebrafish_anatomy ZFA:0007040 forebrain midbrain boundary neural tube ZFA:0007040 Portion of anterior neural tube that gives rise to the forebrain midbrain boundary. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Anterior portion of anterior neural rod that gives rise to the forebrain. TAO:0007041 zebrafish_anatomy ZFA:0007041 forebrain neural tube ZFA:0007041 Anterior portion of anterior neural rod that gives rise to the forebrain. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of the posterior neural tube that gives rise to the spinal cord. TAO:0007042 zebrafish_anatomy ZFA:0007042 spinal cord neural tube ZFA:0007042 Portion of the posterior neural tube that gives rise to the spinal cord. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 Portion of posterior neural tube that gives rise to the hindbrain. TAO:0007043 zebrafish_anatomy ZFA:0007043 hindbrain neural tube ZFA:0007043 Portion of posterior neural tube that gives rise to the hindbrain. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural plate that gives rise to the midbrain hindbrain boundary neural keel. TAO:0007044 midbrain-hindbrain boundary neural plate zebrafish_anatomy ZFA:0007044 midbrain hindbrain boundary neural plate ZFA:0007044 Portion of neural plate that gives rise to the midbrain hindbrain boundary neural keel. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural keel that gives rise to the midbrain hindbrain boundary neural rod. TAO:0007045 midbrain-hindbrain boundary neural keel zebrafish_anatomy ZFA:0007045 midbrain hindbrain boundary neural keel ZFA:0007045 Portion of neural keel that gives rise to the midbrain hindbrain boundary neural rod. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural rod that gives rise to the midbrain hindbrain boundary neural tube. TAO:0007046 midbrain-hindbrain boundary neural rod zebrafish_anatomy ZFA:0007046 midbrain hindbrain boundary neural rod ZFA:0007046 Portion of neural rod that gives rise to the midbrain hindbrain boundary neural tube. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Portion of neural tube that gives rise to the midbrain hindbrain boundary. TAO:0007047 midbrain-hindbrain boundary neural tube zebrafish_anatomy ZFA:0007047 midbrain hindbrain boundary neural tube ZFA:0007047 Portion of neural tube that gives rise to the midbrain hindbrain boundary. GOC:mh GOC:ymb ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-9900-7880 Is a mandibular muscle that attaches Meckel's cartilage to the basihyal cartilage and functions in jaw opening. TAO:0007048 intermandibularis posterior ventral intermandibulari posterior zebrafish_anatomy ZFA:0007048 ventral intermandibularis posterior ZFA:0007048 Is a mandibular muscle that attaches Meckel's cartilage to the basihyal cartilage and functions in jaw opening. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 ZFIN:ZDB-PUB-061010-9 ventral intermandibulari posterior Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing. TAO:0007049 dorsal adductor mandibulae zebrafish_anatomy ZFA:0007049 adductor mandibulae ZFA:0007049 Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 ZFIN:ZDB-PUB-050318-5 Dorsal subdivision of the putative mandibular muscle plate. Splits into the dilatator operculi and the levator arcus palatini. TAO:0007050 constrictors dorsalis zebrafish_anatomy ZFA:0007050 constrictor dorsalis ZFA:0007050 Dorsal subdivision of the putative mandibular muscle plate. Splits into the dilatator operculi and the levator arcus palatini. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-970819-13 constrictors dorsalis Is a ventral paired hyoid muscle that has attachment sites on the basihyal and the posterior end of the ceratohyals and functions in jaw opening. TAO:0007051 interhyal ventral interhyoidei ventral interhyoideus zebrafish_anatomy ZFA:0007051 interhyoideus ZFA:0007051 Is a ventral paired hyoid muscle that has attachment sites on the basihyal and the posterior end of the ceratohyals and functions in jaw opening. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 ventral interhyoidei Is a ventral,paired hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure. TAO:0007052 hyohyal zebrafish_anatomy ZFA:0007052 hyohyoideus ZFA:0007052 Is a ventral,paired hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 Is a dorsal, paired hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics. TAO:0007053 dorsal adductor hyomandibulae dorsal adductors hyomandibulae zebrafish_anatomy ZFA:0007053 adductor hyomandibulae ZFA:0007053 Is a dorsal, paired hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-020703-2 dorsal adductors hyomandibulae Pillar of the semicircular canal around whose perimeter runs the anterior semicircular canal. TAO:0007054 anterior hub of the semicircular canal anterior pillar anterior pillar of the semicircular canal zebrafish_anatomy horizontal hub ZFA:0007054 pillar of the anterior semicircular canal ZFA:0007054 Pillar of the semicircular canal around whose perimeter runs the anterior semicircular canal. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-383 Pillar of the semicircular canal around whose perimeter runs the lateral semicircular canal. TAO:0007055 lateral hub of the semicircular canal ventral bar ventral pillar ventral piller of the semicircular canal zebrafish_anatomy ZFA:0007055 pillar of the lateral semicircular canal ZFA:0007055 Pillar of the semicircular canal around whose perimeter runs the lateral semicircular canal. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-383 Pillar of the semicircular canal around whose perimeter runs the posterior semicircular canal. posterior hub of the semicircular canal posterior pillar posterior pillar of the semicircular zebrafish_anatomy horizontal hub ZFA:0007056 pillar of the posterior semicircular canal ZFA:0007056 Pillar of the semicircular canal around whose perimeter runs the posterior semicircular canal. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-961014-383 Blood vessel within the eye. TAO:0007057 eye vasculature optic vasculature zebrafish_anatomy ocular vasculature ZFA:0007057 ocular blood vessel ZFA:0007057 Blood vessel within the eye. GOC:ymb ORCiD:0000-0002-9900-7880 Multi-tissue structure that is the dorsal-most aspect of the developing neural tube. TAO:0007058 zebrafish_anatomy ZFA:0007058 roof plate ZFA:0007058 Multi-tissue structure that is the dorsal-most aspect of the developing neural tube. GOC:ymb ORCiD:0000-0002-9900-7880 Portion of tissue fated to develop into neurogenic placode. TAO:0007059 neurogenic fields zebrafish_anatomy ZFA:0007059 neurogenic field ZFA:0007059 Portion of tissue fated to develop into neurogenic placode. GOC:ymb ORCiD:0000-0002-9900-7880 neurogenic fields Neurogenic field fated to develop into a dorsolateral placode. TAO:0007060 dorsolateral fields zebrafish_anatomy ZFA:0007060 dorsolateral field ZFA:0007060 Neurogenic field fated to develop into a dorsolateral placode. GOC:ymb ORCiD:0000-0002-9900-7880 dorsolateral fields Neurogenic field fated to develop into an epibranchial placode. TAO:0007061 epibranchial fields zebrafish_anatomy ZFA:0007061 epibranchial field ZFA:0007061 Neurogenic field fated to develop into an epibranchial placode. GOC:ymb ORCiD:0000-0002-9900-7880 epibranchial fields Neurogenic field fated to develop into the olfactory placode. TAO:0007062 olfactory fields zebrafish_anatomy ZFA:0007062 olfactory field ZFA:0007062 Neurogenic field fated to develop into the olfactory placode. GOC:ymb ORCiD:0000-0002-9900-7880 olfactory fields Cranial neural crest that is part of the hindbrain. Yvonne Bradford 2009-04-29T04:51:35Z TAO:0007063 rhombencephalic neural crest zebrafish_anatomy ZFA:0007063 neural crest hindbrain ZFA:0007063 Cranial neural crest that is part of the hindbrain. GOC:ymb ORCiD:0000-0002-9900-7880 Cranial neural crest that migrates into the mandibular arch. Yvonne Bradford 2009-04-29T04:53:53Z TAO:0007064 zebrafish_anatomy ZFA:0007064 mandibular neural crest ZFA:0007064 Cranial neural crest that migrates into the mandibular arch. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-061108-6 Cranial neural crest that migrates into the hyoid arch. Yvonne Bradford 2009-04-29T04:56:12Z TAO:0007065 zebrafish_anatomy ZFA:0007065 hyoid neural crest ZFA:0007065 Cranial neural crest that migrates into the hyoid arch. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-061108-6 Cranial neural crest which gives rise to the glossopharyngeal ganglion. Yvonne Bradford 2009-11-04T03:39:42Z TAO:0007066 zebrafish_anatomy ZFA:0007066 glossopharyngeal neural crest ZFA:0007066 Cranial neural crest which gives rise to the glossopharyngeal ganglion. GOC:ymb ORCiD:0000-0002-9900-7880 Yvonne Bradford 2010-04-21T09:45:38Z TAO:0007067 gX zebrafish_anatomy ZFA:0007067 vagal ganglion ZFA:0007067 Is an epithelium of the auditory apparatus. Yvonne Bradford 2011-04-26T12:34:16Z zebrafish_anatomy ZFA:0007068 otic epithelium ZFA:0007068 Is an epithelium of the auditory apparatus. GOC:ymb ORCiD:0000-0002-9900-7880 Is an otic epithelium composed of cells with a squamous morphology. Yvonne Bradford 2011-04-26T12:38:05Z zebrafish_anatomy ZFA:0007069 otic squamous epithelium ZFA:0007069 Is an otic epithelium composed of cells with a squamous morphology. GOC:ymb ISBN:019514502X ORCiD:0000-0002-9900-7880 Is an otic epithelium that is a neuroepithelium which is pseudostratified and senses sound. Yvonne Bradford 2011-04-26T12:43:35Z zebrafish_anatomy ZFA:0007070 otic sensory epithelium ZFA:0007070 Is an otic epithelium that is a neuroepithelium which is pseudostratified and senses sound. GOC:ymb ORCiD:0000-0002-9900-7880 Is a portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin. yvonne 2012-07-18T02:12:26Z zebrafish_anatomy ZFA:0007071 flexural organ ZFA:0007071 Is a portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-120709-5 Is a multitissue structure that accumulates blood. yvonne 2014-10-24T02:12:44Z zebrafish_anatomy ZFA:0007072 blood sinus ZFA:0007072 Is a multitissue structure that accumulates blood. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 An enlarged chamber in the blood sinus capable of accumulating a large volume of blood. yvonne 2014-10-24T02:14:28Z blood sinus lumen zebrafish_anatomy ZFA:0007073 blood sinus cavity ZFA:0007073 An enlarged chamber in the blood sinus capable of accumulating a large volume of blood. GOC:ymb ORCiD:0000-0002-9900-7880 Is a three-chambered blood sinus found at the base of the maxillary barbel. Responsible, in part, for the movement of the maxillary barbel. yvonne 2014-10-24T02:18:03Z zebrafish_anatomy ZFA:0007074 maxillary barbel blood sinus ZFA:0007074 Is a three-chambered blood sinus found at the base of the maxillary barbel. Responsible, in part, for the movement of the maxillary barbel. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-140816-6 Is a multi-tissue structure forming the smallest chamber of the maxillary barbel blood sinus. It projects into the barbel shaft and has a blood filled lumen, into which extend irregular septa of vascular smooth muscle cells. Additional smooth muscle cells surround the lumen and attach the bulb to the barbel core. Circumferential to the core, there is a thin band of dermal tissue through with run several smaller capillaries and the barbel branch of the of the facial nerve (cranial nerve VII). The entire structure is wrapped by a glandular, stratified epithelium. yvonne 2014-10-24T02:22:04Z zebrafish_anatomy ZFA:0007075 distal bulb of the maxillary blood sinus ZFA:0007075 Is a multi-tissue structure forming the smallest chamber of the maxillary barbel blood sinus. It projects into the barbel shaft and has a blood filled lumen, into which extend irregular septa of vascular smooth muscle cells. Additional smooth muscle cells surround the lumen and attach the bulb to the barbel core. Circumferential to the core, there is a thin band of dermal tissue through with run several smaller capillaries and the barbel branch of the of the facial nerve (cranial nerve VII). The entire structure is wrapped by a glandular, stratified epithelium. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-140813-6 Is a multi-tissue structure that is located outside the maxillary barbel proper and is positioned on the lateral surface of the maxilla, medially attached to the lateral surface of the maxillary bone and is laterally is attached to a hemispheric capsule of dense connective tissue of the distal bulb. It connects with the smaller accessory chamber through a slight isthmus. It has a smooth muscle tunic from which extend luminally projecting muscular septa. yvonne 2014-10-24T02:27:58Z zebrafish_anatomy ZFA:0007076 central chamber of the maxillary blood sinus ZFA:0007076 Is a multi-tissue structure that is located outside the maxillary barbel proper and is positioned on the lateral surface of the maxilla, medially attached to the lateral surface of the maxillary bone and is laterally is attached to a hemispheric capsule of dense connective tissue of the distal bulb. It connects with the smaller accessory chamber through a slight isthmus. It has a smooth muscle tunic from which extend luminally projecting muscular septa. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-140813-6 Is a multi-tissue structure part of the maxillary barbel blood sinus which is connected to the central chamber of the maxillary blood sinus by a slight isthmus. It is not muscularized, has no dense connective tissue capsule and is not attached to adjacent bone. Is composed of dark tunica intima wrapped by thick, light tunica adventitia; cells within the adventitia are widely separated, with extended cytoplasmic veils. External to the adventitia, a branch of the facial nerve and several smaller nerve bundles appear in cross section just lateral to the isthmus. These nerves are in the dermis, but outside the sinus. yvonne 2014-10-24T02:34:40Z zebrafish_anatomy ZFA:0007077 accessory chamber of the maxillary blood sinus ZFA:0007077 Is a multi-tissue structure part of the maxillary barbel blood sinus which is connected to the central chamber of the maxillary blood sinus by a slight isthmus. It is not muscularized, has no dense connective tissue capsule and is not attached to adjacent bone. Is composed of dark tunica intima wrapped by thick, light tunica adventitia; cells within the adventitia are widely separated, with extended cytoplasmic veils. External to the adventitia, a branch of the facial nerve and several smaller nerve bundles appear in cross section just lateral to the isthmus. These nerves are in the dermis, but outside the sinus. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-140813-6 A blind end lymph vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper. yvonne 2014-10-24T02:41:22Z dorsal maxillary barbel lymph vessel zebrafish_anatomy ZFA:0007078 maxillary barbel lymph vessel ZFA:0007078 A blind end lymph vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-100121-1 ZFIN:ZDB-PUB-140816-6 Blood vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper. There are two ventral vessels that connect distally in the maxillary barbel forming a complete capillary loop. yvonne 2014-10-24T02:46:19Z ventral maxillary barbel blood vessel zebrafish_anatomy ZFA:0007079 maxillary barbel blood vessel ZFA:0007079 Blood vessel that emerges from the maxilla, wraps around the sinus isthmus, then runs alongside the distal bulb to enter the barbel shaft proper. There are two ventral vessels that connect distally in the maxillary barbel forming a complete capillary loop. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-100121-1 ZFIN:ZDB-PUB-140816-6 Is a vasculature that delivers fluid to the maxillary barbel. yvonne 2014-10-24T02:52:05Z zebrafish_anatomy ZFA:0007080 maxillary barbel vasculature ZFA:0007080 Is a vasculature that delivers fluid to the maxillary barbel. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-100121-1 Is a vascular plexus at the base, or proximal end, of the developing maxillary barbel. yvonne 2014-10-24T02:55:07Z zebrafish_anatomy ZFA:0007081 maxillary barbel proximal plexus ZFA:0007081 Is a vascular plexus at the base, or proximal end, of the developing maxillary barbel. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-100121-1 ZFIN:ZDB-PUB-140816-6 Region of the neural plate that will give rise to the neural crest. The neural plate border includes progenitors for the dorsal neural tube, the neural crest, and placodes. It is a broad competence domain, established between neural and non-neural ectoderm within which subtle and sequential cell autonomous and non-cell autonomous molecular interactions will progressively define the neural crest fate from adjacent dorsal neural fates. yvonne 2016-01-28T08:43:28Z zebrafish_anatomy ZFA:0007082 neural plate border ZFA:0007082 Region of the neural plate that will give rise to the neural crest. The neural plate border includes progenitors for the dorsal neural tube, the neural crest, and placodes. It is a broad competence domain, established between neural and non-neural ectoderm within which subtle and sequential cell autonomous and non-cell autonomous molecular interactions will progressively define the neural crest fate from adjacent dorsal neural fates. GOC:ymb ORCiD:0000-0002-9900-7880 PMID:22305800 Premigratory neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory neural crest. yvonne 2016-01-28T09:06:50Z zebrafish_anatomy ZFA:0007083 premigratory neural crest ZFA:0007083 Premigratory neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 Cell that is part of the premigratory neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory neural crest. yvonne 2016-01-28T09:29:06Z CL:0007004 premigratory neural crest cells zebrafish_anatomy ZFA:0007084 premigratory neural crest cell ZFA:0007084 Cell that is part of the premigratory neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 premigratory neural crest cells Migratory neural crest population that develops from premigratory neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination. yvonne 2016-01-28T12:04:14Z zebrafish_anatomy ZFA:0007085 migratory neural crest ZFA:0007085 Migratory neural crest population that develops from premigratory neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination. GOC:ymb ORCiD:0000-0002-9900-7880 Cell that is part of the migratory neural crest population. Migratory neural crest cells develop from premigratory neural crest cells and have undergone epithelial to mesenchymal transition and delamination. yvonne 2016-01-28T01:35:09Z CL:0000333 migratory neural crest cells zebrafish_anatomy ZFA:0007086 migratory neural crest cell ZFA:0007086 Cell that is part of the migratory neural crest population. Migratory neural crest cells develop from premigratory neural crest cells and have undergone epithelial to mesenchymal transition and delamination. GOC:ymb ORCiD:0000-0002-9900-7880 migratory neural crest cells Migratory cranial neural crest population that develops from premigratory cranial neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination. yvonne 2016-03-07T11:45:15Z zebrafish_anatomy ZFA:0007087 migratory cranial neural crest ZFA:0007087 Migratory cranial neural crest population that develops from premigratory cranial neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination. GOC:ymb ORCiD:0000-0002-9900-7880 Premigratory cranial neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory cranial neural crest. yvonne 2016-03-07T03:27:33Z zebrafish_anatomy ZFA:0007088 premigratory cranial neural crest ZFA:0007088 Premigratory cranial neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory cranial neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 A cell of the embryo. yvonne 2016-03-30T01:24:36Z CL:0002321 zebrafish_anatomy ZFA:0007089 embryonic cell ZFA:0007089 A cell of the embryo. CL:curator Cell that is part of the premigratory cranial neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory cranial neural crest. yvonne 2016-03-31T12:37:58Z premigratory cranial neural crest cells zebrafish_anatomy ZFA:0007090 premigratory cranial neural crest cell ZFA:0007090 Cell that is part of the premigratory cranial neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory cranial neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 premigratory cranial neural crest cells Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination. yvonne 2016-03-31T12:43:55Z CL:0000008 migratory cranial neural crest cells zebrafish_anatomy ZFA:0007091 migratory cranial neural crest cell ZFA:0007091 Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination. GOC:ymb ORCiD:0000-0002-9900-7880 migratory cranial neural crest cells Premigratory trunk neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory trunk neural crest. yvonne 2016-03-31T01:03:25Z zebrafish_anatomy ZFA:0007092 premigratory trunk neural crest ZFA:0007092 Premigratory trunk neural crest population that develops from the neural plate border. The cells of this group will undergo epithelial to mesenchymal transition and delaminate to produce the migratory trunk neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 Migratory trunk neural crest population that develops from premigratory trunk neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination. yvonne 2016-03-31T01:11:09Z zebrafish_anatomy ZFA:0007093 migratory trunk neural crest ZFA:0007093 Migratory trunk neural crest population that develops from premigratory trunk neural crest. This group of neural crest has undergone ectomesenchymal transition and delamination. GOC:ymb ORCiD:0000-0002-9900-7880 Cell that is part of the premigratory trunk neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory trunk neural crest. yvonne 2016-03-31T01:18:04Z premigratory trunk neural crest cells zebrafish_anatomy ZFA:0007094 premigratory trunk neural crest cell ZFA:0007094 Cell that is part of the premigratory trunk neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory trunk neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 premigratory trunk neural crest cells Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination. yvonne 2016-03-31T01:22:09Z CL:0000011 migratory trunk neural crest cells zebrafish_anatomy ZFA:0007095 migratory trunk neural crest cell ZFA:0007095 Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination. GOC:ymb ORCiD:0000-0002-9900-7880 migratory trunk neural crest cells Vertebra that is posteriorly adjacent to vertebra 12. yvonne 2016-10-19T14:15:01Z zebrafish_anatomy ZFA:0007096 vertebra 13 ZFA:0007096 Vertebra that is posteriorly adjacent to vertebra 12. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 13. yvonne 2016-10-19T14:22:33Z zebrafish_anatomy ZFA:0007097 vertebra 14 ZFA:0007097 Vertebra that is posteriorly adjacent to vertebra 13. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 14. yvonne 2016-10-19T15:10:35Z zebrafish_anatomy ZFA:0007098 vertebra 15 ZFA:0007098 Vertebra that is posteriorly adjacent to vertebra 14. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 15. yvonne 2016-10-19T15:15:45Z zebrafish_anatomy ZFA:0007099 vertebra 16 ZFA:0007099 Vertebra that is posteriorly adjacent to vertebra 15. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 16. yvonne 2016-10-19T15:17:20Z zebrafish_anatomy ZFA:0007100 vertebra 17 ZFA:0007100 Vertebra that is posteriorly adjacent to vertebra 16. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 17. yvonne 2016-10-19T15:19:07Z zebrafish_anatomy ZFA:0007101 vertebra 18 ZFA:0007101 Vertebra that is posteriorly adjacent to vertebra 17. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 18. yvonne 2016-10-19T15:20:46Z zebrafish_anatomy ZFA:0007102 vertebra 19 ZFA:0007102 Vertebra that is posteriorly adjacent to vertebra 18. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 19. yvonne 2016-10-19T15:22:42Z zebrafish_anatomy ZFA:0007103 vertebra 20 ZFA:0007103 Vertebra that is posteriorly adjacent to vertebra 19. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 20. yvonne 2016-10-19T15:24:43Z zebrafish_anatomy ZFA:0007104 vertebra 21 ZFA:0007104 Vertebra that is posteriorly adjacent to vertebra 20. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 21. yvonne 2016-10-19T15:26:15Z zebrafish_anatomy ZFA:0007105 vertebra 22 ZFA:0007105 Vertebra that is posteriorly adjacent to vertebra 21. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 22. yvonne 2016-10-19T15:29:09Z zebrafish_anatomy ZFA:0007106 vertebra 23 ZFA:0007106 Vertebra that is posteriorly adjacent to vertebra 22. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 23. yvonne 2016-10-19T15:31:04Z zebrafish_anatomy ZFA:0007107 vertebra 24 ZFA:0007107 Vertebra that is posteriorly adjacent to vertebra 23. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 24. yvonne 2016-10-19T15:32:40Z zebrafish_anatomy ZFA:0007108 vertebra 25 ZFA:0007108 Vertebra that is posteriorly adjacent to vertebra 24. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 25. yvonne 2016-10-19T15:34:15Z zebrafish_anatomy ZFA:0007109 vertebra 26 ZFA:0007109 Vertebra that is posteriorly adjacent to vertebra 25. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 26. yvonne 2016-10-19T15:36:10Z zebrafish_anatomy ZFA:0007110 vertebra 27 ZFA:0007110 Vertebra that is posteriorly adjacent to vertebra 26. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 27. yvonne 2016-10-19T15:37:40Z zebrafish_anatomy ZFA:0007111 vertebra 28 ZFA:0007111 Vertebra that is posteriorly adjacent to vertebra 27. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 28. yvonne 2016-10-19T15:39:17Z zebrafish_anatomy ZFA:0007112 vertebra 29 ZFA:0007112 Vertebra that is posteriorly adjacent to vertebra 28. GOC:ymb ORCiD:0000-0002-9900-7880 Vertebra that is posteriorly adjacent to vertebra 29. yvonne 2016-10-19T15:41:01Z zebrafish_anatomy ZFA:0007113 vertebra 30 ZFA:0007113 Vertebra that is posteriorly adjacent to vertebra 29. GOC:ymb ORCiD:0000-0002-9900-7880 An anatomical structure that is an opening or tube that connects two distinct anatomical spaces. Yvonne 2018-03-23T11:46:06Z zebrafish_anatomy ZFA:0007114 anatomical conduit ZFA:0007114 An anatomical structure that is an opening or tube that connects two distinct anatomical spaces. GOC:ymb ORCid:0000-0002-9900-7880 An anatomical cluster composed of the heart and associated structures. Yvonne 2018-03-26T11:52:32Z zebrafish_anatomy ZFA:0007115 pericardial region ZFA:0007115 An anatomical cluster composed of the heart and associated structures. GOC:ymb ORCid:0000-0002-9900-7880 An anatomical cluster composed of the organs of the pleuroperitoneal cavity and associated structures. Yvonne 2018-03-26T14:19:43Z zebrafish_anatomy ZFA:0007116 pleuroperitoneal region ZFA:0007116 An anatomical cluster composed of the organs of the pleuroperitoneal cavity and associated structures. GOC:ymb ORCid:0000-0002-9900-7880 Joint between Meckel's cartilage and palatoquadrate cartilage. Yvonne 2019-04-05T15:06:57Z jaw joint zebrafish_anatomy ZFA:0007117 Meckel's cartilage-palatoquadrate cartilage joint ZFA:0007117 Joint between Meckel's cartilage and palatoquadrate cartilage. GOC:ymb ORCid:0000-0002-9900-7880 ZFIN:ZDB-PUB-151122-6 The vertebral body end plate is part of the autocentrum. The anterior and posterior surfaces of the autocentrum constitute the funnel shaped vertebral body end plates. The outer rim of the end plate is the vertebral body growth zone. The anterior and posterior end plates are connected by bony plates that are horizontally attached to the ourter contour of the autocentrum. Yvonne 2019-04-08T12:21:06Z vertebral body endplate zebrafish_anatomy ZFA:0007118 vertebral body end plate ZFA:0007118 The vertebral body end plate is part of the autocentrum. The anterior and posterior surfaces of the autocentrum constitute the funnel shaped vertebral body end plates. The outer rim of the end plate is the vertebral body growth zone. The anterior and posterior end plates are connected by bony plates that are horizontally attached to the ourter contour of the autocentrum. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-180228-2 Ligament that connects adjacent vertebra. The intervertebral ligament (IVL) connects the posterior vertebral end plate to the anterior vertebral end plate of adjacent vertebra. For example the IVL connects the posterior end plate of vertebra 14 to the anterior end plate of vertebra 15. It is typically composed of three distinct layers: the notochord sheath which is mainly type II collagen; the outer elastin layer; and a layer of type I collagen fiber bundles. Yvonne 2019-04-08T13:27:22Z IVL annulus fibrosus zebrafish_anatomy ZFA:0007119 intervertebral ligament ZFA:0007119 Ligament that connects adjacent vertebra. The intervertebral ligament (IVL) connects the posterior vertebral end plate to the anterior vertebral end plate of adjacent vertebra. For example the IVL connects the posterior end plate of vertebra 14 to the anterior end plate of vertebra 15. It is typically composed of three distinct layers: the notochord sheath which is mainly type II collagen; the outer elastin layer; and a layer of type I collagen fiber bundles. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-180808-7 annulus fibrosus ZFIN:ZDB-PUB-210902-3 Spinal cord interneuron located along the central canal that extends a microvilliated apical process into the cerebrospinal fluid and extends ascending axonal projections ventrally and ipsilaterally. CSF-cNs are GABAergic neurons that express PKD2L1 (TRPP3) channels and have been shown to be chemosensory and mechanosensory, responding to pH and osmolarity changes as well as mechanical stimuli associated with tail bending. CSF-cNs originate from two distinct progenitor domains, p3 and pMN. CSF-cNs project onto caudal primary (CaP motor neurons) and commissural primary ascending (CoPA) sensory interneurons within the escape circuit as well as onto V0-v interneurons within the slow swimming circuit. Yvonne 2020-03-03T10:15:16Z CSF-cN CSF-cNs zebrafish_anatomy ZFA:0007120 cerebrospinal fluid contacting neuron ZFA:0007120 Spinal cord interneuron located along the central canal that extends a microvilliated apical process into the cerebrospinal fluid and extends ascending axonal projections ventrally and ipsilaterally. CSF-cNs are GABAergic neurons that express PKD2L1 (TRPP3) channels and have been shown to be chemosensory and mechanosensory, responding to pH and osmolarity changes as well as mechanical stimuli associated with tail bending. CSF-cNs originate from two distinct progenitor domains, p3 and pMN. CSF-cNs project onto caudal primary (CaP motor neurons) and commissural primary ascending (CoPA) sensory interneurons within the escape circuit as well as onto V0-v interneurons within the slow swimming circuit. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-170409-2 CSF-cN ZFIN:ZDB-PUB-170409-2 CSF-cNs ZFIN:ZDB-PUB-170409-2 A cerebrospinal fluid contacting neuron that originates form p3 progenitor domain. The apical extension of ventral CSF-cNs are more compact than that of dorsal CSF-cNs. Ventral CSF-cNs synapse with CaP motor neurons and project onto CoPA sensory interneurons. Ventral CSF-cNs respond to longitudinal contractions of the spinal cord. Frequently called "KA neurons". Yvonne 2020-03-03T10:51:35Z ventral CSF-cN ventral CSF-cNs zebrafish_anatomy KA 2 ZFA:0007121 ventral cerebrospinal fluid contacting neuron ZFA:0007121 A cerebrospinal fluid contacting neuron that originates form p3 progenitor domain. The apical extension of ventral CSF-cNs are more compact than that of dorsal CSF-cNs. Ventral CSF-cNs synapse with CaP motor neurons and project onto CoPA sensory interneurons. Ventral CSF-cNs respond to longitudinal contractions of the spinal cord. Frequently called "KA neurons". GOC:ymb ORDiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-170409-2 ventral CSF-cN ZFIN:ZDB-PUB-170409-2 ventral CSF-cNs ZFIN:ZDB-PUB-170409-2 A stem cell that gives rise to several epidermal cell types, including ionocytes and keratinocytes. Yvonne 2020-03-03T13:31:57Z CL:1000428 zebrafish_anatomy <new synonym> ZFA:0007122 epidermal stem cell ZFA:0007122 A stem cell that gives rise to several epidermal cell types, including ionocytes and keratinocytes. GOC:ymb ORCiD:0000-0002-9900-7880 A cell that will become an ionocyte. Ionocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC and Tp63 positive. Yvonne 2020-03-03T14:01:21Z ionocyte progenitor cells zebrafish_anatomy ZFA:0007123 ionocyte progenitor cell ZFA:0007123 A cell that will become an ionocyte. Ionocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC and Tp63 positive. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-190402-19 ionocyte progenitor cells A cell that will become a keratinocyte. Keratinocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC negative and Tp63 positive. Yvonne 2020-03-03T14:12:30Z keratinocyte progenitor cells zebrafish_anatomy ZFA:0007124 keratinocyte progenitor cell ZFA:0007124 A cell that will become a keratinocyte. Keratinocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC negative and Tp63 positive. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-190402-19 keratinocyte progenitor cells A portion of tissue that is the deepest point of the fold of the midbrain hindbrain boundary. In zebrafish the midbrain hindbrain boundary constriction (MHBC) is formed soon after neural tube closure. The MHBC is formed by the bending of the basal side of the neuroepithelium. Yvonne 2020-03-04T12:35:25Z MHBC zebrafish_anatomy ZFA:0007125 midbrain hindbrain boundary constriction ZFA:0007125 A portion of tissue that is the deepest point of the fold of the midbrain hindbrain boundary. In zebrafish the midbrain hindbrain boundary constriction (MHBC) is formed soon after neural tube closure. The MHBC is formed by the bending of the basal side of the neuroepithelium. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-080825-24 MHBC ZFIN:ZDB-PUB-080825-24 Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. CARO:0000013 CL:0000000 TAO:0009000 cells zebrafish_anatomy ZFA:0009000 cell ZFA:0009000 Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. CARO:MAH ORCiD:0000-0001-9114-8737 cells CL:0000006 TAO:0009001 receptor cells (sensu Animalia) zebrafish_anatomy ZFA:0009001 receptor cell (sensu Animalia) ZFA:0009001 receptor cells (sensu Animalia) An embryonic cell that is formed before the germ layers have been formed. CL:0000007 TAO:0009002 early embryonic cells zebrafish_anatomy ZFA:0009002 early embryonic cell ZFA:0009002 An embryonic cell that is formed before the germ layers have been formed. CL:curator early embryonic cells A cell of the cranial neural crest. cranial neural crest cells zebrafish_anatomy ZFA:0009003 cranial neural crest cell ZFA:0009003 A cell of the cranial neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 cranial neural crest cells A cell of the trunk neural crest. trunk neural crest cells zebrafish_anatomy ZFA:0009004 trunk neural crest cell ZFA:0009004 A cell of the trunk neural crest. GOC:ymb ORCiD:0000-0002-9900-7880 trunk neural crest cells A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids. CL:0000017 TAO:0009005 spermatocytes zebrafish_anatomy ZFA:0009005 spermatocyte ZFA:0009005 A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids. CL:curator spermatocytes A mature male germ cell that develops from a spermatid. CL:0000019 TAO:0009006 sperm cell spermatozoid spermatozoon zebrafish_anatomy ZFA:0009006 sperm ZFA:0009006 A mature male germ cell that develops from a spermatid. CL:curator An euploid male germ cell of an early stage of spermatogenesis. ZFA:0001337 CL:0000020 TAO:0001337 TAO:0009007 spermatogonia zebrafish_anatomy ZFA:0009007 spermatogonium ZFA:0009007 An euploid male germ cell of an early stage of spermatogenesis. CL:curator spermatogonia true ZFA:0009008 CL:0000029 TAO:0009009 zebrafish_anatomy ZFA:0009009 neuron neural crest derived ZFA:0009009 CL:0000030 TAO:0009010 glioblasts zebrafish_anatomy ZFA:0009010 glioblast ZFA:0009010 glioblasts CL:0000031 TAO:0009011 neuroblasts zebrafish_anatomy ZFA:0009011 neuroblast ZFA:0009011 neuroblasts CL:0000032 TAO:0009012 neuroplacodal cells zebrafish_anatomy ZFA:0009012 neuroplacodal cell ZFA:0009012 neuroplacodal cells CL:0000035 TAO:0009013 single fate stem cells zebrafish_anatomy ZFA:0009013 single fate stem cell ZFA:0009013 single fate stem cells A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. CL:0000037 TAO:0009014 HSC hemopoietic stem cell zebrafish_anatomy colony forming unit hematopoietic hematopoietic progenitor cell hemopoietic progenitor cell ZFA:0009014 hematopoietic stem cell ZFA:0009014 A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. CL:curator A progenitor cell committed to the erythroid lineage. CL:0000038 TAO:0009015 zebrafish_anatomy BFU-E CFU-E blast forming unit erythroid burst forming unit erythroid colony forming unit erythroid erythroid stem cell ZFA:0009015 erythroid progenitor cell ZFA:0009015 A progenitor cell committed to the erythroid lineage. ZFIN:ZDB-PUB-070221-1 A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. CL:0000039 TAO:0009016 germ line cells zebrafish_anatomy ZFA:0009016 germ line cell ZFA:0009016 A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. GOC:tfm germ line cells A myeloid progenitor cell committed to the monocyte lineage. CL:0000040 TAO:0009017 CFU-M colony forming unit macrophage monocyte stem cell zebrafish_anatomy ZFA:0009017 monoblast ZFA:0009017 A myeloid progenitor cell committed to the monocyte lineage. CL:curator http://www.copewithcytokines.de A myeloblast committed to the neutrophil lineage. A myeloblast is the most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm. CL:0000042 TAO:0009018 zebrafish_anatomy neutrophilic granuloblast ZFA:0009018 neutrophilic myeloblast ZFA:0009018 A myeloblast committed to the neutrophil lineage. A myeloblast is the most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm. ZFIN:ZDB-PUB-070221-1 CL:0000047 TAO:0009019 neuronal stem cells zebrafish_anatomy ZFA:0009019 neuronal stem cell ZFA:0009019 neuronal stem cells A stem cell that can give rise to mulitple lineages of cells. CL:0000048 TAO:0009020 multipotent stem cell zebrafish_anatomy ZFA:0009020 multi fate stem cell ZFA:0009020 A stem cell that can give rise to mulitple lineages of cells. CL:curator A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. CL:0000049 TAO:0009021 CMP zebrafish_anatomy colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte multipotential myeloid stem cell myeloid stem cell pluripotent stem cell (bone marrow) ZFA:0009021 common myeloid progenitor ZFA:0009021 A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. ZFIN:ZDB-PUB-070221-2 CMP ZFIN:ZDB-PUB-070221-2 colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte ZFIN:ZDB-PUB-070221-2 multipotential myeloid stem cell ZFIN:ZDB-PUB-070221-2 myeloid stem cell ZFIN:ZDB-PUB-070221-2 pluripotent stem cell (bone marrow) ZFIN:ZDB-PUB-070221-2 A progenitor cell committed to the megakaryocyte and erythroid lineages. CL:0000050 TAO:0009022 MEP colony forming unit erythroid megakaryocyte zebrafish_anatomy ZFA:0009022 megakaryocyte erythroid progenitor cell ZFA:0009022 A progenitor cell committed to the megakaryocyte and erythroid lineages. CL:curator An oligopotent progenitor cell committed to the lymphoid lineage. CL:0000051 TAO:0009023 CLP zebrafish_anatomy ELP committed lymphopoietic stem cell early lymphocyte progenitor lymphoid stem cell lymphopoietic stem cell ZFA:0009023 common lymphoid progenitor ZFA:0009023 An oligopotent progenitor cell committed to the lymphoid lineage. CL:curator A stem cell from which all cells of the body can form. CL:0000052 TAO:0009024 totipotent stem cells zebrafish_anatomy ZFA:0009024 totipotent stem cell ZFA:0009024 A stem cell from which all cells of the body can form. CL:curator totipotent stem cells An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. CL:0000056 TAO:0009025 myoblasts zebrafish_anatomy ZFA:0009025 myoblast ZFA:0009025 An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. CL:curator myoblasts A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. CL:0000057 TAO:0009026 fibroblasts zebrafish_anatomy ZFA:0009026 Not in CL. fibroblast ZFA:0009026 A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. CL:curator fibroblasts Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium). CL:0000058 TAO:0009027 chondroblasts zebrafish_anatomy ZFA:0009027 chondroblast ZFA:0009027 Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium). GOC:tfm chondroblasts A cylindrical epithelial cell in the innermost layer of the enamel organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamel), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992). CL:0000059 TAO:0009028 ameloblasts zebrafish_anatomy ZFA:0009028 ameloblast ZFA:0009028 A cylindrical epithelial cell in the innermost layer of the enamel organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamel), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992). CL:curator ameloblasts Skeletogenic cell that secretes dentine matrix, is derived from the tooth pulp. CL:0000060 TAO:0009029 odontoblasts zebrafish_anatomy ZFA:0009029 odontoblast ZFA:0009029 Skeletogenic cell that secretes dentine matrix, is derived from the tooth pulp. GOC:cvs odontoblasts A cell of ectomesenchymal origin concerned with the formation of the layer of cementum on the roots of teeth. CL:0000061 TAO:0009030 cementoblasts zebrafish_anatomy ZFA:0009030 cementoblast ZFA:0009030 A cell of ectomesenchymal origin concerned with the formation of the layer of cementum on the roots of teeth. ISBN:0781733901 cementoblasts A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. CL:0000062 TAO:0009031 osteoblasts zebrafish_anatomy ZFA:0009031 osteoblast ZFA:0009031 A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. CL:curator osteoblasts CL:0000064 TAO:0009032 ciliated cells zebrafish_anatomy ZFA:0009032 ciliated cell ZFA:0009032 ciliated cells A neurectoderm derived cell that lines the neural lumen. CL:0000065 TAO:0009033 ependymocyte zebrafish_anatomy ZFA:0009033 ependymal cell ZFA:0009033 A neurectoderm derived cell that lines the neural lumen. CL:curator A cell that is usually found in a two-dimensional sheet with a free surface. CL:0000066 TAO:0009034 epithelial cells zebrafish_anatomy ZFA:0009034 epithelial cell ZFA:0009034 A cell that is usually found in a two-dimensional sheet with a free surface. CL:curator epithelial cells CL:0000067 TAO:0009035 ciliated epithelial cells zebrafish_anatomy ZFA:0009035 ciliated epithelial cell ZFA:0009035 ciliated epithelial cells CL:0000071 TAO:0009036 blood vessel endothelial cells zebrafish_anatomy ZFA:0009036 blood vessel endothelial cell ZFA:0009036 blood vessel endothelial cells CL:0000073 TAO:0009037 barrier epithelial cells zebrafish_anatomy ZFA:0009037 barrier epithelial cell ZFA:0009037 barrier epithelial cells CL:0000075 TAO:0009038 columnar/cuboidal epithelial cells zebrafish_anatomy ZFA:0009038 columnar/cuboidal epithelial cell ZFA:0009038 columnar/cuboidal epithelial cells CL:0000076 TAO:0009039 squamous epithelial cells zebrafish_anatomy ZFA:0009039 squamous epithelial cell ZFA:0009039 squamous epithelial cells CL:0000077 TAO:0009040 mesothelial cells zebrafish_anatomy ZFA:0009040 mesothelial cell ZFA:0009040 mesothelial cells CL:0000078 TAO:0009041 peridermal cells zebrafish_anatomy ZFA:0009041 peridermal cell ZFA:0009041 peridermal cells CL:0000079 TAO:0009042 stratified epithelial cells zebrafish_anatomy ZFA:0009042 stratified epithelial cell ZFA:0009042 stratified epithelial cells A cell which moves among different tissues of the body, via blood, lymph, or other medium. CL:0000080 TAO:0009043 circulating cells zebrafish_anatomy ZFA:0009043 circulating cell ZFA:0009043 A cell which moves among different tissues of the body, via blood, lymph, or other medium. CL:curator circulating cells A cell found predominately in the blood. CL:0000081 TAO:0009044 blood cells zebrafish_anatomy ZFA:0009044 blood cell ZFA:0009044 A cell found predominately in the blood. CL:curator blood cells CL:0000083 TAO:0009045 epithelial cells of pancreas zebrafish_anatomy ZFA:0009045 epithelial cell of pancreas ZFA:0009045 epithelial cells of pancreas A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. ZFA:0009340 ZFA:0009341 CL:0000084 TAO:0009046 TAO:0009340 TAO:0009341 T lymphocyte T-cell T-lymphocyte immature T cell immature T lymphocyte immature T-cell immature T-lymphocyte mature T cell mature T lymphocyte mature T-cell mature T-lymphocyte zebrafish_anatomy ZFA:0009046 CL:0000804 and CL:0000812 were merged in the cell ontology into CL:0000084. T cell ZFA:0009046 A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. ZFIN:ZDB-PUB-070221-3 A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. CL:0000092 TAO:0009047 zebrafish_anatomy chondroclast ZFA:0009047 Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid. osteoclast ZFA:0009047 A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. CL:curator ZFIN:ZDB-PUB-070221-3 A leukocyte with abundant granules in the cytoplasm. CL:0000094 TAO:0009048 granulocytes zebrafish_anatomy ZFA:0009048 granulocyte ZFA:0009048 A leukocyte with abundant granules in the cytoplasm. CL:curator granulocytes A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. CL:0000096 TAO:0009049 PMN mature neutrocyte mature neutrophil leucocyte mature neutrophil leukocyte mature neutrophilic leucocyte mature neutrophilic leukocyte polymorphonuclear neutrophil polynuclear neutrophilic leucocyte polynuclear neutrophilic leukocyte zebrafish_anatomy poly polymorphonuclear leucocyte polymorphonuclear leukocyte ZFA:0009049 mature neutrophil ZFA:0009049 A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. CL:curator CL:0000098 TAO:0009050 sensory epithelial cells zebrafish_anatomy ZFA:0009050 sensory epithelial cell ZFA:0009050 sensory epithelial cells Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. CL:0000099 TAO:0009051 interneurons zebrafish_anatomy ZFA:0009051 interneuron ZFA:0009051 Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. CL:curator interneurons An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement. CL:0000100 TAO:0009052 motoneuron zebrafish_anatomy ZFA:0009052 motor neuron ZFA:0009052 An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement. CL:curator ZFA:0000432 CL:0000101 TAO:0009053 zebrafish_anatomy ZFA:0009053 sensory neuron ZFA:0009053 CL:0000102 TAO:0009054 polymodal neurons zebrafish_anatomy ZFA:0009054 polymodal neuron ZFA:0009054 polymodal neurons A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body. CL:0000103 TAO:0009055 bipolar neurons zebrafish_anatomy ZFA:0009055 bipolar neuron ZFA:0009055 A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body. ZFIN:ZDB-PUB-070221-4 bipolar neurons CL:0000104 TAO:0009056 multipolar neurons zebrafish_anatomy ZFA:0009056 multipolar neuron ZFA:0009056 multipolar neurons CL:0000105 TAO:0009057 pseudounipolar neurons zebrafish_anatomy ZFA:0009057 pseudounipolar neuron ZFA:0009057 pseudounipolar neurons CL:0000106 TAO:0009058 unipolar neurons zebrafish_anatomy ZFA:0009058 unipolar neuron ZFA:0009058 unipolar neurons CL:0000107 TAO:0009059 autonomic neurons zebrafish_anatomy ZFA:0009059 autonomic neuron ZFA:0009059 autonomic neurons A neuron that uses acetylcholine as a vesicular neurotransmitter. CL:0000108 TAO:0009060 cholinergic neurons zebrafish_anatomy ZFA:0009060 cholinergic neuron ZFA:0009060 A neuron that uses acetylcholine as a vesicular neurotransmitter. GOC:tfm cholinergic neurons CL:0000109 TAO:0009061 adrenergic neurons zebrafish_anatomy ZFA:0009061 adrenergic neuron ZFA:0009061 adrenergic neurons CL:0000110 TAO:0009062 peptidergic neurons zebrafish_anatomy ZFA:0009062 peptidergic neuron ZFA:0009062 peptidergic neurons CL:0000111 TAO:0009063 peripheral neurons zebrafish_anatomy ZFA:0009063 peripheral neuron ZFA:0009063 peripheral neurons A vertebrate phagocyte with a single nucleus. CL:0000113 TAO:0009064 mononuclear phagocytes zebrafish_anatomy ZFA:0009064 mononuclear phagocyte ZFA:0009064 A vertebrate phagocyte with a single nucleus. ZFIN:ZDB-PUB-070221-3 mononuclear phagocytes CL:0000115 TAO:0009065 endothelial cells zebrafish_anatomy ZFA:0009065 endothelial cell ZFA:0009065 endothelial cells Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance. ZFA:0000409 CL:0000116 TAO:0009066 zebrafish_anatomy ZFA:0009066 pioneer neuron ZFA:0009066 Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance. GOC:mh ORCiD:0000-0001-9114-8737 ZFIN:ZDB-PUB-070131-1 CL:0000117 TAO:0009067 CNS neurons (sensu Vertebrata) zebrafish_anatomy ZFA:0009067 CNS neuron (sensu Vertebrata) ZFA:0009067 CNS neurons (sensu Vertebrata) CL:0000118 TAO:0009068 basket cells zebrafish_anatomy ZFA:0009068 basket cell ZFA:0009068 basket cells CL:0000119 TAO:0009069 Golgi cells zebrafish_anatomy ZFA:0009069 Golgi cell ZFA:0009069 Golgi cells CL:0000120 TAO:0009070 granule cells zebrafish_anatomy ZFA:0009070 granule cell ZFA:0009070 granule cells The output neuron of the cerebellar cortex. CL:0000121 TAO:0009071 Purkinje cells zebrafish_anatomy ZFA:0009071 Purkinje cell ZFA:0009071 The output neuron of the cerebellar cortex. CL:curator Purkinje cells CL:0000122 TAO:0009072 stellate cells zebrafish_anatomy ZFA:0009072 stellate cell ZFA:0009072 stellate cells A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. ZFA:0000025 CL:0000125 TAO:0009073 neuroglia zebrafish_anatomy ZFA:0009073 glial cell ZFA:0009073 A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. CL:curator CL:0000126 TAO:0009074 macroglial cells zebrafish_anatomy ZFA:0009074 macroglial cell ZFA:0009074 macroglial cells A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. CL:0000127 TAO:0009075 astrocytes zebrafish_anatomy ZFA:0009075 astrocyte ZFA:0009075 A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. CL:curator astrocytes A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. CL:0000128 TAO:0009076 zebrafish_anatomy oligodendroglia ZFA:0009076 oligodendrocyte ZFA:0009076 A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. CL:curator A central nervous system macrophage found in the parenchyma of the central nervous system. CL:0000129 TAO:0009077 microglia zebrafish_anatomy ZFA:0009077 microglial cell ZFA:0009077 A central nervous system macrophage found in the parenchyma of the central nervous system. ZFIN:ZDB-PUB-070221-1 CL:0000131 TAO:0009078 gut endothelial cells zebrafish_anatomy ZFA:0009078 gut endothelial cell ZFA:0009078 gut endothelial cells Cell of the single layer of large flattened cells covering the surface of the cornea. CL:0000132 TAO:0009079 corneal endothelial cells zebrafish_anatomy ZFA:0009079 corneal endothelial cell ZFA:0009079 Cell of the single layer of large flattened cells covering the surface of the cornea. CL:curator corneal endothelial cells CL:0000133 TAO:0009080 neurectoderm cell zebrafish_anatomy ZFA:0009080 neurectodermal cell ZFA:0009080 A cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. CL:0000134 TAO:0009081 mesenchymal cells zebrafish_anatomy ZFA:0009081 mesenchymal cell ZFA:0009081 A cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. CL:curator mesenchymal cells A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. Cell that stores fat in a unilocular lipid droplet, has a thin circular cytoplasm and pericentral nucleus. The average adult adipocyte diameter is between 30 and 40 micrometers. No adipocytes were observed in larvae on 6 or 9 dpf. ZFA:0009208 CL:0000136 CL:0000450 TAO:0009082 TAO:0009208 adipocyte lipocyte lipocytes zebrafish_anatomy ZFA:0009082 fat cell ZFA:0009082 A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. Cell that stores fat in a unilocular lipid droplet, has a thin circular cytoplasm and pericentral nucleus. The average adult adipocyte diameter is between 30 and 40 micrometers. No adipocytes were observed in larvae on 6 or 9 dpf. CL:curator ZFIN:ZDB-PUB-090417-9 ZFIN:ZDB-PUB-101011-51 A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi. CL:0000137 TAO:0009083 osteocytes zebrafish_anatomy ZFA:0009083 osteocyte ZFA:0009083 A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi. CL:curator osteocytes Polymorphic cell that form cartilage. CL:0000138 TAO:0009084 chondrocytes zebrafish_anatomy ZFA:0009084 chondrocyte ZFA:0009084 Polymorphic cell that form cartilage. CL:curator chondrocytes Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell. CL:0000059 TAO:0009085 amelocytes zebrafish_anatomical_ontology ZFA:0009085 Was CL:0000139, seems that cell type was merged into CL:0000059 along with CL:0000053. amelocyte ZFA:0009085 Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell. GOC:tfm amelocytes CL:0000140 TAO:0009086 odontocytes zebrafish_anatomy ZFA:0009086 odontocyte ZFA:0009086 odontocytes An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth. CL:0000141 TAO:0009087 cementocytes zebrafish_anatomy ZFA:0009087 cementocyte ZFA:0009087 An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth. ISBN:0781733901 cementocytes A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response. CL:0000145 TAO:0009088 APC zebrafish_anatomy ZFA:0009088 Note change of name; nearly all somatic cells can present antigens to T cells via MHC Class I complexes leading to effector responses, but professional antigen presenting cells constitutively express MHC Class II as well as constimulatory molecules, and thus can initiate immune responses via T cells. professional antigen presenting cell ZFA:0009088 A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response. ZFIN:ZDB-PUB-070221-3 CL:0000146 TAO:0009089 simple columnar epithelial cells zebrafish_anatomy ZFA:0009089 simple columnar epithelial cell ZFA:0009089 simple columnar epithelial cells ZFA:0000057 CL:0000147 TAO:0009090 chromatocyte chromatophore zebrafish_anatomy ZFA:0009090 pigment cell ZFA:0009090 A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. ZFA:0001091 CL:0000148 TAO:0009091 melanophore zebrafish_anatomy ZFA:0009091 melanocyte ZFA:0009091 A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. CL:curator A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct. CL:0000152 TAO:0009092 exocrine cells zebrafish_anatomy ZFA:0009092 exocrine cell ZFA:0009092 A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct. ZFIN:ZDB-PUB-070221-5 exocrine cells CL:0000153 TAO:0009093 hyaluronic acid secreting cell zebrafish_anatomy ZFA:0009093 GAG secreting cell ZFA:0009093 A cell of the epithelial lining that produce and secrete mucins. CL:0000160 TAO:0009094 chalice cell zebrafish_anatomy ZFA:0009094 goblet cell ZFA:0009094 A cell of the epithelial lining that produce and secrete mucins. CL:curator CL:0000161 TAO:0009095 acid secreting cells zebrafish_anatomy ZFA:0009095 acid secreting cell ZFA:0009095 acid secreting cells A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions. CL:0000163 TAO:0009096 endocrine cells zebrafish_anatomy ZFA:0009096 endocrine cell ZFA:0009096 A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions. CL:curator endocrine cells An endocrine cell that is located in the epithelium of the gastrointestinal tract. CL:0000164 TAO:0009097 enteroendocrine cells zebrafish_anatomy ZFA:0009097 enteroendocrine cell ZFA:0009097 An endocrine cell that is located in the epithelium of the gastrointestinal tract. SANBI:curator enteroendocrine cells A neuron that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system. CL:0000165 TAO:0009098 neurosecretory cell zebrafish_anatomy ZFA:0009098 neuroendocrine cell ZFA:0009098 A neuron that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system. CL:curator A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system. CL:0000166 TAO:0009099 phaeochromocyte zebrafish_anatomy ZFA:0009099 chromaffin cell ZFA:0009099 A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system. CL:curator CL:0000167 TAO:0009100 peptide hormone secreting cells zebrafish_anatomy ZFA:0009100 peptide hormone secreting cell ZFA:0009100 peptide hormone secreting cells CL:0000168 TAO:0009101 insulin secreting cells zebrafish_anatomy ZFA:0009101 insulin secreting cell ZFA:0009101 insulin secreting cells CL:0000169 TAO:0009102 beta cell zebrafish_anatomy ZFA:0009102 pancreatic B cell ZFA:0009102 CL:0000170 TAO:0009103 glucagon secreting cells zebrafish_anatomy ZFA:0009103 glucagon secreting cell ZFA:0009103 glucagon secreting cells CL:0000171 TAO:0009104 alpha cell zebrafish_anatomy ZFA:0009104 pancreatic A cell ZFA:0009104 CL:0000172 TAO:0009105 somatostatin secreting cells zebrafish_anatomy ZFA:0009105 somatostatin secreting cell ZFA:0009105 somatostatin secreting cells CL:0000174 TAO:0009106 steroid hormone secreting cells zebrafish_anatomy ZFA:0009106 steroid hormone secreting cell ZFA:0009106 steroid hormone secreting cells CL:0000177 TAO:0009107 testosterone secreting cells zebrafish_anatomy ZFA:0009107 testosterone secreting cell ZFA:0009107 testosterone secreting cells A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis. CL:0000178 TAO:0009108 interstitial cell zebrafish_anatomy ZFA:0009108 Leydig cell ZFA:0009108 A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis. PMID:12050120 CL:0000179 TAO:0009109 progesterone secreting cells zebrafish_anatomy ZFA:0009109 progesterone secreting cell ZFA:0009109 progesterone secreting cells CL:0000180 TAO:0009110 estradiol secreting cells zebrafish_anatomy ZFA:0009110 estradiol secreting cell ZFA:0009110 estradiol secreting cells The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. CL:0000182 TAO:0009111 hepatocytes zebrafish_anatomy ZFA:0009111 hepatocyte ZFA:0009111 The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. CL:curator hepatocytes An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitial and muscle layer are missing (thus distinguishing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells. CL:0000669 TAO:0009112 pericytes perivascular cell zebrafish_anatomy ZFA:0009112 CL:0000184 was merged into CL:0000699. pericyte ZFA:0009112 An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitial and muscle layer are missing (thus distinguishing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells. CL:curator ISBN:0721662544 PMID:16807374 PMID:17986482 PMID:20024907 pericytes CL:0000185 TAO:0009113 myoepithelial cells zebrafish_anatomy ZFA:0009113 myoepithelial cell ZFA:0009113 myoepithelial cells A mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle. CL:0000187 TAO:0009114 myocyte myofiber zebrafish_anatomy ZFA:0009114 muscle cell ZFA:0009114 A mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle. CL:curator CL:0000188 TAO:0009115 skeletal muscle fiber zebrafish_anatomy striated muscle cell ZFA:0009115 skeletal muscle cell ZFA:0009115 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. ZFA:0001087 CL:0000189 TAO:0009116 red muscle cell slow muscle fiber zebrafish_anatomy ZFA:0009116 slow muscle cell ZFA:0009116 A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. CL:curator slow muscle fiber ISBN:0815316208 A muscle cell that has a fast contractile response. Fast muscle fibers make up the deep portion of the myotome and are also known as white muscle cells. ZFA:0001088 CL:0000190 TAO:0009117 fast muscle fiber white muscle cell zebrafish_anatomy ZFA:0009117 fast muscle cell ZFA:0009117 A muscle cell that has a fast contractile response. Fast muscle fibers make up the deep portion of the myotome and are also known as white muscle cells. GOC:ymb ORCiD:0000-0002-9900-7880 ZFIN:ZDB-PUB-080501-8 ZFIN:ZDB-PUB-961219-12 A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). CL:0000192 TAO:0009118 non-striated muscle cell zebrafish_anatomy ZFA:0009118 smooth muscle cell ZFA:0009118 A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). CL:curator The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings. CL:0000198 TAO:0009119 nociceptor nocireceptor zebrafish_anatomy ZFA:0009119 pain receptor cell ZFA:0009119 The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings. CL:curator A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system. CL:0000199 TAO:0009120 mechanoreceptor cells zebrafish_anatomy ZFA:0009120 mechanoreceptor cell ZFA:0009120 A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system. CL:curator mechanoreceptor cells A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. CL:0000202 TAO:0009121 auditory hair cell auditory receptor cells zebrafish_anatomy ZFA:0009121 Has alt_id CL:0000201. auditory receptor cell ZFA:0009121 A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. CL:curator auditory receptor cells ZFA:0009121 zebrafish_anatomy ZFA:0009122 obsolete_auditory hair cell true ZFA:0009122 A cellular receptor which mediates the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain. CL:0000205 TAO:0009123 thermoreceptor cells zebrafish_anatomy ZFA:0009123 thermoreceptor cell ZFA:0009123 A cellular receptor which mediates the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain. CL:curator thermoreceptor cells A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood. CL:0000206 TAO:0009124 chemoreceptor cells zebrafish_anatomy ZFA:0009124 chemoreceptor cell ZFA:0009124 A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood. CL:curator chemoreceptor cells CL:0000207 TAO:0009125 Schultze's cell olfactory receptor neuron olfactory sensory neuron zebrafish_anatomy ZFA:0009125 olfactory receptor cell ZFA:0009125 CL:0000209 TAO:0009126 taste receptor cells zebrafish_anatomy ZFA:0009126 taste receptor cell ZFA:0009126 taste receptor cells A cell specialized to detect and transduce light. CL:0000210 TAO:0009127 photoreceptor cells zebrafish_anatomy ZFA:0009127 photoreceptor cell ZFA:0009127 A cell specialized to detect and transduce light. CL:curator photoreceptor cells A cell whose function is determined by the generation or the reception of an electric signal. CL:0000211 TAO:0009128 electrically active cells zebrafish_anatomy ZFA:0009128 electrically active cell ZFA:0009128 A cell whose function is determined by the generation or the reception of an electric signal. CL:curator electrically active cells A cell that takes up and metabolizes substances. CL:0000212 TAO:0009129 absorptive cells zebrafish_anatomy ZFA:0009129 absorptive cell ZFA:0009129 A cell that takes up and metabolizes substances. CL:curator absorptive cells A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism. CL:0000213 TAO:0009130 boundary cell zebrafish_anatomy ZFA:0009130 lining cell ZFA:0009130 A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism. CL:curator CL:0000214 TAO:0009131 synovial cells zebrafish_anatomy ZFA:0009131 synovial cell ZFA:0009131 synovial cells A cell whose primary function is to prevent the transport of stuff across compartments. CL:0000215 TAO:0009132 barrier cells zebrafish_anatomy ZFA:0009132 barrier cell ZFA:0009132 A cell whose primary function is to prevent the transport of stuff across compartments. CL:curator barrier cells A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier. CL:0000216 TAO:0009133 Sertoli cells zebrafish_anatomy ZFA:0009133 Sertoli cell ZFA:0009133 A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier. CL:curator Sertoli cells CL:0000217 TAO:0009134 insulating cells zebrafish_anatomy ZFA:0009134 insulating cell ZFA:0009134 insulating cells A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons. CL:0000218 TAO:0009135 Schwann cells zebrafish_anatomy ZFA:0009135 myelinating Schwann cell ZFA:0009135 A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons. CL:curator Schwann cells A cell that moves by its own activities. CL:0000219 TAO:0009136 motile cells zebrafish_anatomy ZFA:0009136 motile cell ZFA:0009136 A cell that moves by its own activities. CL:curator motile cells A cell of the outer of the three germ layers of the embryo. CL:0000221 TAO:0009137 ectoderm cell zebrafish_anatomy ZFA:0009137 ectodermal cell ZFA:0009137 A cell of the outer of the three germ layers of the embryo. CL:curator A cell of the middle germ layer of the embryo. CL:0000222 TAO:0009138 mesoblast mesoderm cell zebrafish_anatomy ZFA:0009138 mesodermal cell ZFA:0009138 A cell of the middle germ layer of the embryo. CL:curator A cell of the inner of the three germ layers of the embryo. CL:0000223 TAO:0009139 endoderm cell zebrafish_anatomy ZFA:0009139 endodermal cell ZFA:0009139 A cell of the inner of the three germ layers of the embryo. CL:curator Any cell capable of ingesting particulate matter via phagocytosis. CL:0000234 TAO:0009140 phagocytes zebrafish_anatomy ZFA:0009140 phagocyte ZFA:0009140 Any cell capable of ingesting particulate matter via phagocytosis. ZFIN:ZDB-PUB-070221-1 phagocytes A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. CL:0000235 TAO:0009141 histiocyte zebrafish_anatomy ZFA:0009141 macrophage ZFA:0009141 A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. CL:curator A type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex. CL:0000236 TAO:0009142 B lymphocyte B-cell B-lymphocyte zebrafish_anatomy ZFA:0009142 B cell ZFA:0009142 A type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex. ZFIN:ZDB-PUB-070221-3 CL:0000239 TAO:0009143 brush border epithelial cells zebrafish_anatomy ZFA:0009143 brush border epithelial cell ZFA:0009143 brush border epithelial cells CL:0000240 TAO:0009144 stratified squamous epithelial cells zebrafish_anatomy ZFA:0009144 stratified squamous epithelial cell ZFA:0009144 stratified squamous epithelial cells CL:0000241 TAO:0009145 stratified cuboidal epithelial cells zebrafish_anatomy ZFA:0009145 stratified cuboidal epithelial cell ZFA:0009145 stratified cuboidal epithelial cells A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber. CL:0000242 TAO:0009146 Merkel cells zebrafish_anatomy ZFA:0009146 Merkel cell ZFA:0009146 A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber. CL:curator Merkel cells A non-neuronal cells of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. CL:0000243 TAO:0009147 glial cells (sensu Vertebrata) zebrafish_anatomy ZFA:0009147 glial cell (sensu Vertebrata) ZFA:0009147 A non-neuronal cells of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. CL:curator glial cells (sensu Vertebrata) CL:0000244 TAO:0009148 transitional epithelial cells zebrafish_anatomy ZFA:0009148 transitional epithelial cell ZFA:0009148 transitional epithelial cells Is a hindbrain interneuron. Giant reticulospinal neurons possessing thick crossed axons and positioned dorsally in the hindbrain tegmentum at the level of entrance of the eighth cranial nerve. The Mauthner neuron is paired. The M-cell has two large invariant dendrites: The lateral dendrite terminates in the sensory neuropil of the acoustico-lateral area, and the ventral dendrite terminates in the neuropil of the motor tegmentum. Fine dendrites are present, and mostly arise from three regions; from the terminus of each major dendrite and from the ventral surface of the perikaryon. ZFA:0000087 ZFA:0000613 CL:0000246 TAO:0009149 zebrafish_anatomy ZFA:0009149 Mauthner neuron ZFA:0009149 Is a hindbrain interneuron. Giant reticulospinal neurons possessing thick crossed axons and positioned dorsally in the hindbrain tegmentum at the level of entrance of the eighth cranial nerve. The Mauthner neuron is paired. The M-cell has two large invariant dendrites: The lateral dendrite terminates in the sensory neuropil of the acoustico-lateral area, and the ventral dendrite terminates in the neuropil of the motor tegmentum. Fine dendrites are present, and mostly arise from three regions; from the terminus of each major dendrite and from the ventral surface of the perikaryon. GOC:CVS GOC:MH ORCiD:0000-0001-9114-8737 ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-961014-599 ZFIN:ZDB-PUB-961014-770 Primary sensory neurons with cell bodies located in the dorsal spinal cord, that innervate the integument of the trunk and tail at early larval stages. The cutaneous axons of Rohon-Beard neurons display a broad spectrum of peripheral axon branching patterns. Most Rohon-Beard neurons undergo apoptosis by 5dpf. ZFA:0000002 CL:0000247 TAO:0009150 RB neuron Rohon-Beard cell Rohon-Beard neurons zebrafish_anatomy ZFA:0009150 Rohon-Beard neuron ZFA:0009150 Primary sensory neurons with cell bodies located in the dorsal spinal cord, that innervate the integument of the trunk and tail at early larval stages. The cutaneous axons of Rohon-Beard neurons display a broad spectrum of peripheral axon branching patterns. Most Rohon-Beard neurons undergo apoptosis by 5dpf. ZFIN:ZDB-PUB-120807-45 Rohon-Beard neurons CL:0000249 TAO:0009151 hatching gland cells zebrafish_anatomy ZFA:0009151 hatching gland cell ZFA:0009151 hatching gland cells CL:0000251 TAO:0009152 extramedullary cells zebrafish_anatomy ZFA:0009152 extramedullary cell ZFA:0009152 extramedullary cells CL:0000253 TAO:0009153 eurydendroid cells zebrafish_anatomy ZFA:0009153 eurydendroid cell ZFA:0009153 eurydendroid cells CL:0000287 TAO:0009154 eye photoreceptor cells zebrafish_anatomy ZFA:0009154 eye photoreceptor cell ZFA:0009154 eye photoreceptor cells An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin. CL:0000295 TAO:0009155 somatotrophin secreting cell somatotropic cell zebrafish_anatomy growth hormone secreting cell somatotrope somatotroph somatrophic cell ZFA:0009155 somatotropin secreting cell ZFA:0009155 An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin. CL:curator A mature sexual reproductive cell having a single set of unpaired chromosomes. CL:0000300 TAO:0009156 gametes zebrafish_anatomy ZFA:0009156 gamete ZFA:0009156 A mature sexual reproductive cell having a single set of unpaired chromosomes. GOC:tfm gametes CL:0000311 TAO:0009157 keratin accumulating cells zebrafish_anatomy ZFA:0009157 keratin accumulating cell ZFA:0009157 keratin accumulating cells An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell. CL:0000312 TAO:0009158 keratinocytes zebrafish_anatomy ZFA:0009158 keratinocyte ZFA:0009158 An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell. CL:curator keratinocytes ZFA:0000129 CL:0000319 TAO:0009159 mucous cell zebrafish_anatomy ZFA:0009159 mucus secreting cell ZFA:0009159 CL:0000321 TAO:0009160 seminal fluid secreting cells zebrafish_anatomy ZFA:0009160 seminal fluid secreting cell ZFA:0009160 seminal fluid secreting cells CL:0000324 TAO:0009161 metanephric mesenchyme stem cells zebrafish_anatomy ZFA:0009161 No metanephrose in zebrafish. Consider nephrogenic mesenchyme stem cell ZFA:0009187. metanephric mesenchyme stem cell true ZFA:0009161 metanephric mesenchyme stem cells CL:0000327 TAO:0009162 extracellular matrix secreting cells zebrafish_anatomy ZFA:0009162 extracellular matrix secreting cell ZFA:0009162 extracellular matrix secreting cells CL:0000328 TAO:0009163 myelin accumulating cells zebrafish_anatomy ZFA:0009163 myelin accumulating cell ZFA:0009163 myelin accumulating cells CL:0000329 TAO:0009164 oxygen accumulating cells zebrafish_anatomy ZFA:0009164 oxygen accumulating cell ZFA:0009164 oxygen accumulating cells A cell of the neural crest. The neural crest is a strip of specialized ectoderm, the neural plate border, which flanks each side of the embryonic neural plate. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesenchymal transition and delamination to form migratory neural crest cells. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells. neural crest cells zebrafish_anatomy ZFA:0009165 neural crest cell ZFA:0009165 A cell of the neural crest. The neural crest is a strip of specialized ectoderm, the neural plate border, which flanks each side of the embryonic neural plate. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesenchymal transition and delamination to form migratory neural crest cells. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells. GOC:ymb ORCiD:0000-0002-9900-7880 neural crest cells CL:0000335 TAO:0009166 mesenchyme condensation cells zebrafish_anatomy ZFA:0009166 mesenchyme condensation cell ZFA:0009166 mesenchyme condensation cells CL:0000336 TAO:0009167 chromafin cell zebrafish_anatomy ZFA:0009167 adrenal medulla cell ZFA:0009167 CL:0000337 TAO:0009168 zebrafish_anatomy ZFA:0009168 neuroblast (sensu Vertebrata) ZFA:0009168 CL:0000339 TAO:0009169 glioblasts (sensu Vertebrata) zebrafish_anatomy ZFA:0009169 glioblast (sensu Vertebrata) ZFA:0009169 glioblasts (sensu Vertebrata) CL:0000342 TAO:0009170 pigment cells (sensu Vertebrata) zebrafish_anatomy ZFA:0009170 pigment cell (sensu Vertebrata) ZFA:0009170 pigment cells (sensu Vertebrata) CL:0000343 TAO:0009171 visual pigment cells (sensu Vertebrata) zebrafish_anatomy ZFA:0009171 visual pigment cell (sensu Vertebrata) ZFA:0009171 visual pigment cells (sensu Vertebrata) CL:0000344 TAO:0009172 non-visual cells (sensu Vertebrata) zebrafish_anatomy ZFA:0009172 Obsoleted because CL obsoleted. Consider pigment cell ZFA:0009090 non-visual cell (sensu Vertebrata) true ZFA:0009172 non-visual cells (sensu Vertebrata) CL:0000345 TAO:0009173 dental papilla cells zebrafish_anatomy ZFA:0009173 dental papilla cell ZFA:0009173 dental papilla cells A cell of the sclera of the eye. CL:0000347 TAO:0009174 scleral cells zebrafish_anatomy ZFA:0009174 scleral cell ZFA:0009174 A cell of the sclera of the eye. GOC:cvs ORCiD:0000-0002-2244-7917 scleral cells A cell of the choroid of the eye. CL:0000348 TAO:0009175 choroidal cells zebrafish_anatomy ZFA:0009175 choroidal cell of the eye ZFA:0009175 A cell of the choroid of the eye. GOC:cvs ORCiD:0000-0002-2244-7917 choroidal cells CL:0000349 TAO:0009176 extraembryonic cells zebrafish_anatomy ZFA:0009176 extraembryonic cell ZFA:0009176 extraembryonic cells An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). CL:0000353 TAO:0009177 zebrafish_anatomy blastomere ZFA:0009177 blastoderm cell ZFA:0009177 An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). CL:curator CL:0000354 TAO:0009178 blastemal cells zebrafish_anatomy ZFA:0009178 blastemal cell ZFA:0009178 blastemal cells CL:0000355 TAO:0009179 muscle stem cells zebrafish_anatomy ZFA:0009179 muscle stem cell ZFA:0009179 muscle stem cells CL:0000357 TAO:0009180 stratified epithelial stem cells zebrafish_anatomy ZFA:0009180 stratified epithelial stem cell ZFA:0009180 stratified epithelial stem cells CL:0000359 TAO:0009181 vascular associated smooth muscle cells zebrafish_anatomy ZFA:0009181 vascular associated smooth muscle cell ZFA:0009181 vascular associated smooth muscle cells A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. CL:0000361 TAO:0009182 gastrula cells zebrafish_anatomy ZFA:0009182 gastrula cell ZFA:0009182 A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. CL:curator gastrula cells A cell found in the outermost layer of the organism. CL:0000362 TAO:0009183 epidermal cells zebrafish_anatomy ZFA:0009183 epidermal cell ZFA:0009183 A cell found in the outermost layer of the organism. CL:curator epidermal cells CL:0000375 TAO:0009184 osteoprogenitor cells zebrafish_anatomy ZFA:0009184 osteoprogenitor cell ZFA:0009184 osteoprogenitor cells CL:0000379 TAO:0009185 sensory processing neurons zebrafish_anatomy ZFA:0009185 sensory processing neuron ZFA:0009185 sensory processing neurons CL:0000381 TAO:0009186 neurosecretory neurons zebrafish_anatomy ZFA:0009186 neurosecretory neuron ZFA:0009186 neurosecretory neurons CL:0000383 TAO:0009187 nephrogenic mesenchyme stem cells zebrafish_anatomy ZFA:0009187 nephrogenic mesenchyme stem cell ZFA:0009187 nephrogenic mesenchyme stem cells CL:0000384 TAO:0009188 ligament cells zebrafish_anatomy ZFA:0009188 ligament cell ZFA:0009188 ligament cells CL:0000388 TAO:0009189 muscle attachment cell zebrafish_anatomy ZFA:0009189 tendon cell ZFA:0009189 A cell whose function is determined by its response to an electric signal. CL:0000393 TAO:0009190 electrically responsive cells zebrafish_anatomy ZFA:0009190 electrically responsive cell ZFA:0009190 A cell whose function is determined by its response to an electric signal. CL:curator electrically responsive cells Interneuron that is part of the central nervous system. CL:0000402 TAO:0009191 CNS interneurons zebrafish_anatomy ZFA:0009191 CNS interneuron ZFA:0009191 Interneuron that is part of the central nervous system. GOC:cvs ORCiD:0000-0002-2244-7917 CNS interneurons true ZFA:0009192 A cell that initiates an electrical signal and passes that signal to another cell. CL:0000404 TAO:0009193 electrically signaling cells zebrafish_anatomy ZFA:0009193 electrically signaling cell ZFA:0009193 A cell that initiates an electrical signal and passes that signal to another cell. CL:curator electrically signaling cells CL:0000406 TAO:0009194 CNS short range interneurons zebrafish_anatomy ZFA:0009194 CNS short range interneuron ZFA:0009194 CNS short range interneurons CL:0000410 TAO:0009195 CNS long range interneurons zebrafish_anatomy ZFA:0009195 CNS long range interneuron ZFA:0009195 CNS long range interneurons CL:0000411 TAO:0009196 hypodermal cells zebrafish_anatomy ZFA:0009196 hypodermal cell ZFA:0009196 hypodermal cells true ZFA:0009197 A pigment cell derived from the neural crest. Contains carotenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. ZFA:0001092 CL:0000430 TAO:0009198 zebrafish_anatomy ZFA:0009198 xanthophore ZFA:0009198 A pigment cell derived from the neural crest. Contains carotenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. CL:curator A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. ZFA:0001090 CL:0000431 TAO:0009199 zebrafish_anatomy iridocyte iridosome ZFA:0009199 iridophore ZFA:0009199 A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. CL:curator CL:0000432 TAO:0009200 reticular cells zebrafish_anatomy ZFA:0009200 reticular cell ZFA:0009200 reticular cells CL:0000435 TAO:0009201 alkali secreting cells zebrafish_anatomy ZFA:0009201 alkali secreting cell ZFA:0009201 alkali secreting cells CL:0000437 TAO:0009202 delta basophil gonadotrope gonadotroph zebrafish_anatomy ZFA:0009202 follicle stimulating hormone secreting cell ZFA:0009202 Cell that secretes luteinizing hormone. CL:0000438 TAO:0009203 delta basophila gonadotrope zebrafish_anatomy gonadotroph ZFA:0009203 luteinizing hormone secreting cell ZFA:0009203 Cell that secretes luteinizing hormone. CVS:0000-0002-2244-7917 An acidophilic cell of the anterior pituitary that produces prolactin. CL:0000439 TAO:0009204 epsilon-acidophil lactotrope lactotroph lactotropic cell mammotrope mammotroph mammotrophic cell mammotropic cell zebrafish_anatomy ZFA:0009204 prolactin secreting cell ZFA:0009204 An acidophilic cell of the anterior pituitary that produces prolactin. CL:curator A cell of the intermediate pituitary that produces melanocyte stimulating hormone. CL:0000440 TAO:0009205 melanotrope melanotroph zebrafish_anatomy ZFA:0009205 melanocyte stimulating hormone secreting cell ZFA:0009205 A cell of the intermediate pituitary that produces melanocyte stimulating hormone. CL:curator CL:0000443 TAO:0009206 calcitonin secreting cells zebrafish_anatomy ZFA:0009206 calcitonin secreting cell ZFA:0009206 calcitonin secreting cells TAO:0009207 chief cell zebrafish_anatomy ZFA:0009207 parathyroid hormone secreting cell ZFA:0009207 true ZFA:0009208 A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. CL:0000451 TAO:0009209 zebrafish_anatomy interdigitating cell veiled cell ZFA:0009209 dendritic cell ZFA:0009209 A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. ZFIN:ZDB-PUB-070221-3 CL:0000452 TAO:0009210 thyroid hormone secreting cells zebrafish_anatomy ZFA:0009210 thyroid hormone secreting cell ZFA:0009210 thyroid hormone secreting cells CL:0000454 TAO:0009211 epinephrin secreting cells zebrafish_anatomy ZFA:0009211 epinephrin secreting cell ZFA:0009211 epinephrin secreting cells CL:0000457 TAO:0009212 biogenic amine secreting cells zebrafish_anatomy ZFA:0009212 biogenic amine secreting cell ZFA:0009212 biogenic amine secreting cells CL:0000458 TAO:0009213 serotin secreting cells zebrafish_anatomy ZFA:0009213 serotonin secreting cell ZFA:0009213 serotin secreting cells A cell capable of producting norepinephrine. Norepinephrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epinephrine is synthesized from norepinephrine by the actions of the phenylethanolamine N-methyltransferase enzyme. CL:0000459 TAO:0009214 noradrenergic cell norepinephrin secreting cells zebrafish_anatomy ZFA:0009214 norepinephrine secreting cell ZFA:0009214 A cell capable of producting norepinephrine. Norepinephrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epinephrine is synthesized from norepinephrine by the actions of the phenylethanolamine N-methyltransferase enzyme. CL:curator norepinephrin secreting cells CL:0000460 TAO:0009215 glucocorticoid secreting cells zebrafish_anatomy ZFA:0009215 glucocorticoid secreting cell ZFA:0009215 glucocorticoid secreting cells A basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin. CL:0000467 TAO:0009216 corticotrope corticotroph corticotropin hormone secreting cell zebrafish_anatomy adrenocorticotrophic hormone secreting cell corticotrophin hormone secreting cell ZFA:0009216 adrenocorticotropic hormone secreting cell ZFA:0009216 A basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin. CL:curator CL:0000470 TAO:0009217 digestive enzyme secreting cells zebrafish_anatomy ZFA:0009217 digestive enzyme secreting cell ZFA:0009217 digestive enzyme secreting cells A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin. CL:0000476 TAO:0009218 beta-basophil thyrotrope thyrotroph zebrafish_anatomy ZFA:0009218 thyroid stimulating hormone secreting cell ZFA:0009218 A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin. CL:curator CL:0000488 TAO:0009219 visible light photoreceptor cells zebrafish_anatomy ZFA:0009219 visible light photoreceptor cell ZFA:0009219 visible light photoreceptor cells CL:0000490 TAO:0009220 photopic photoreceptor cells zebrafish_anatomy ZFA:0009220 photopic photoreceptor cell ZFA:0009220 photopic photoreceptor cells CL:0000494 TAO:0009221 UV sensitive photoreceptor cells zebrafish_anatomy ZFA:0009221 UV sensitive photoreceptor cell ZFA:0009221 UV sensitive photoreceptor cells CL:0000495 TAO:0009222 blue sensitive photoreceptor cells zebrafish_anatomy ZFA:0009222 blue sensitive photoreceptor cell ZFA:0009222 blue sensitive photoreceptor cells CL:0000496 TAO:0009223 green sensitive photoreceptor cells zebrafish_anatomy ZFA:0009223 green sensitive photoreceptor cell ZFA:0009223 green sensitive photoreceptor cells CL:0000497 TAO:0009224 red sensitive photoreceptor cells zebrafish_anatomy ZFA:0009224 red sensitive photoreceptor cell ZFA:0009224 red sensitive photoreceptor cells CL:0000498 TAO:0009225 inhibitory interneurons zebrafish_anatomy ZFA:0009225 inhibitory interneuron ZFA:0009225 inhibitory interneurons A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. CL:0000499 TAO:0009226 stromal cells zebrafish_anatomy ZFA:0009226 stromal cell ZFA:0009226 A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. CL:curator stromal cells A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors. CL:0000501 TAO:0009227 granulosa cells zebrafish_anatomy ZFA:0009227 granulosa cell ZFA:0009227 A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors. CL:curator granulosa cells A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin. CL:0000502 TAO:0009228 D cells zebrafish_anatomy ZFA:0009228 D cell ZFA:0009228 A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin. CL:curator D cells A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precursors of estrogens in the granulosa cells. CL:0000503 TAO:0009229 theca cells zebrafish_anatomy ZFA:0009229 theca cell ZFA:0009229 A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precursors of estrogens in the granulosa cells. CL:curator theca cells CL:0000505 TAO:0009230 substance P secreting cells zebrafish_anatomy ZFA:0009230 substance P secreting cell ZFA:0009230 substance P secreting cells CL:0000506 TAO:0009231 enkephalin secreting cells zebrafish_anatomy ZFA:0009231 enkephalin secreting cell ZFA:0009231 enkephalin secreting cells CL:0000507 TAO:0009232 endorphin secreting cells zebrafish_anatomy ZFA:0009232 endorphin secreting cell ZFA:0009232 endorphin secreting cells CL:0000512 TAO:0009233 paracrine cells zebrafish_anatomy ZFA:0009233 paracrine cell ZFA:0009233 paracrine cells A precursor cell destined to differentiate into cardiac myocytes. CL:0000513 TAO:0009234 zebrafish_anatomy cardioblast ZFA:0009234 cardiac muscle myoblast ZFA:0009234 A precursor cell destined to differentiate into cardiac myocytes. CL:curator A precursor cell destined to differentiate into smooth muscle myocytes. CL:0000514 TAO:0009235 zebrafish_anatomy satellite cell ZFA:0009235 smooth muscle myoblast ZFA:0009235 A precursor cell destined to differentiate into smooth muscle myocytes. CL:curator A myoblast that differentiates into skeletal muscle fibers. CL:0000515 TAO:0009236 skeletal muscle myoblasts zebrafish_anatomy ZFA:0009236 skeletal muscle myoblast ZFA:0009236 A myoblast that differentiates into skeletal muscle fibers. CL:curator skeletal muscle myoblasts A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia. CL:0000516 TAO:0009237 perineural satellite cell zebrafish_anatomy ZFA:0009237 perineuronal satellite cell ZFA:0009237 A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia. CL:curator A neuron which conveys sensory information centrally from the periphery. CL:0000526 TAO:0009238 input neuron zebrafish_anatomy ZFA:0009238 afferent neuron ZFA:0009238 A neuron which conveys sensory information centrally from the periphery. CL:curator A neuron which sends impulses peripherally to activate muscles or secretory cells. CL:0000527 TAO:0009239 output neuron zebrafish_anatomy ZFA:0009239 efferent neuron ZFA:0009239 A neuron which sends impulses peripherally to activate muscles or secretory cells. CL:curator A nerve cell where transmission is mediated by nitric oxide. CL:0000528 TAO:0009240 nitrergic neurons zebrafish_anatomy ZFA:0009240 nitrergic neuron ZFA:0009240 A nerve cell where transmission is mediated by nitric oxide. CL:curator nitrergic neurons CL:0000529 TAO:0009241 pigmented epithelial cells zebrafish_anatomy ZFA:0009241 pigmented epithelial cell ZFA:0009241 pigmented epithelial cells ZFA:0000055 CL:0000530 TAO:0009242 zebrafish_anatomy ZFA:0009242 primary neuron ZFA:0009242 A primary motor neuron part of the spinal cord. The CaP motoneuron is found within 1 soma diameter of the ventral root. The axon of the CaP motoneuron extends ventrally from the ventral root, within the space between the notochord and the medial surface of the axial muscles. Below the notochord, the axon extends within the ventral median septum to the ventral edge of the axial muscles, where it turns dorsally and laterally to project over the lateral surface of the axial muscles. CL:0000532 TAO:0009243 CAP motoneurons caudal primary motoneuron zebrafish_anatomy ZFA:0009243 CaP motoneuron ZFA:0009243 A primary motor neuron part of the spinal cord. The CaP motoneuron is found within 1 soma diameter of the ventral root. The axon of the CaP motoneuron extends ventrally from the ventral root, within the space between the notochord and the medial surface of the axial muscles. Below the notochord, the axon extends within the ventral median septum to the ventral edge of the axial muscles, where it turns dorsally and laterally to project over the lateral surface of the axial muscles. ZFIN:ZDB-PUB-961014-272 ZFIN:ZDB-PUB-961014-649 ZFIN:ZDB-PUB-961014-814 CAP motoneurons Motor neurons that arise during the first day of development. Primary motoneurons have larger diameter cell bodies and axons than secondary motoneurons and are positioned more dorsally and medially than secondary motoneurons. Primary motoneurons are present in a single bilateral pair of clusters in each spinal segment and innervate axial muscle fibers in the corresponding pair of myotomes. Axons make a conspicuous loop around the Mauthner axon before entering the ventral root. ZFA:0000572 CL:0000533 TAO:0009244 primary motoneuron zebrafish_anatomy ZFA:0009244 primary motor neuron ZFA:0009244 Motor neurons that arise during the first day of development. Primary motoneurons have larger diameter cell bodies and axons than secondary motoneurons and are positioned more dorsally and medially than secondary motoneurons. Primary motoneurons are present in a single bilateral pair of clusters in each spinal segment and innervate axial muscle fibers in the corresponding pair of myotomes. Axons make a conspicuous loop around the Mauthner axon before entering the ventral root. ISBN:0471530506 ZFA:0000945 CL:0000534 TAO:0009245 zebrafish_anatomy ZFA:0009245 primary interneuron ZFA:0009245 CL:0000535 TAO:0009246 secondary neurons zebrafish_anatomy ZFA:0009246 secondary neuron ZFA:0009246 secondary neurons Motor neurons that develop several hours later than primary motoneurons and sprout axons several hours after the primary motor growth cones have extended to the periphery. They have smaller cell bodies and are located more ventrally and laterally in the spinal cord than primary motoneurons. Axons usually project directly out of the spinal cord with no apparent contact with the Mauthner axon and are positioned lateral to the Mauthner axon in their path to the ventral root. Secondary motoneurons have smaller fields, which can overlap one another, and innervate many fewer muscle fibers than primary motoneurons. ZFA:0000584 CL:0000536 TAO:0009247 secondary motoneuron zebrafish_anatomy ZFA:0009247 secondary motor neuron ZFA:0009247 Motor neurons that develop several hours later than primary motoneurons and sprout axons several hours after the primary motor growth cones have extended to the periphery. They have smaller cell bodies and are located more ventrally and laterally in the spinal cord than primary motoneurons. Axons usually project directly out of the spinal cord with no apparent contact with the Mauthner axon and are positioned lateral to the Mauthner axon in their path to the ventral root. Secondary motoneurons have smaller fields, which can overlap one another, and innervate many fewer muscle fibers than primary motoneurons. ISBN:0471530506 ZFIN:ZDB-PUB-961014-1247 The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. ZFA:0000134 CL:0000540 TAO:0009248 zebrafish_anatomy ZFA:0009248 neuron ZFA:0009248 The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. CL:curator A cell that originates from the neural crest and differentiates into a pigment cell. CL:0000541 TAO:0009249 melanoblasts zebrafish_anatomy ZFA:0009249 melanoblast ZFA:0009249 A cell that originates from the neural crest and differentiates into a pigment cell. CL:curator melanoblasts A cell of the B cell, T cell, or natural killer cell lineage. CL:0000542 TAO:0009250 lymphocytes zebrafish_anatomy ZFA:0009250 lymphocyte ZFA:0009250 A cell of the B cell, T cell, or natural killer cell lineage. ZFIN:ZDB-PUB-070221-3 lymphocytes A progenitor cell committed to the granulocyte and monocyte lineages. CL:0000557 TAO:0009251 GMP colony forming unit granulocyte macrophage granulocyte-macrophage progenitor zebrafish_anatomy CFU-C , Colony forming unit in culture ZFA:0009251 granulocyte monocyte progenitor cell ZFA:0009251 A progenitor cell committed to the granulocyte and monocyte lineages. ZFIN:ZDB-PUB-070221-1 http://www.copewithcytokines.de GMP ZFIN:ZDB-PUB-070221-1 colony forming unit granulocyte macrophage ZFIN:ZDB-PUB-070221-1 granulocyte-macrophage progenitor ZFIN:ZDB-PUB-070221-1 An immature erythrocyte showing a basophilic reticulum under vital staining. CL:0000558 TAO:0009252 reticulocytes zebrafish_anatomy ZFA:0009252 reticulocyte ZFA:0009252 An immature erythrocyte showing a basophilic reticulum under vital staining. ZFIN:ZDB-PUB-070221-1 reticulocytes A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. CL:0000559 TAO:0009253 promonocytes zebrafish_anatomy ZFA:0009253 promonocyte ZFA:0009253 A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. ZFIN:ZDB-PUB-070221-1 promonocytes A late neutrophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil. CL:0000560 TAO:0009254 band cell band form rod neutrophil stab cell zebrafish_anatomy band ZFA:0009254 band form neutrophil ZFA:0009254 A late neutrophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil. ZFIN:ZDB-PUB-070221-1 Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. CL:0000561 TAO:0009255 amacrine neuron zebrafish_anatomy ZFA:0009255 amacrine cell ZFA:0009255 Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. CL:curator An erythrocyte having a nucleus. CL:0000562 TAO:0009256 RBC red blood cell zebrafish_anatomy ZFA:0009256 nucleate erythrocyte ZFA:0009256 An erythrocyte having a nucleus. CL:curator A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, and containing a few, as yet undifferentiated, cytoplasmic granules. CL:0000564 TAO:0009257 neutrophilic premyelocyte neutrophilic progranulocyte promyelocyte zebrafish_anatomy ZFA:0009257 neutrophilic promyelocyte ZFA:0009257 A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, and containing a few, as yet undifferentiated, cytoplasmic granules. ZFIN:ZDB-PUB-070221-1 CL:0000566 TAO:0009258 angioblast zebrafish_anatomy ZFA:0009258 angioblastic mesenchymal cell ZFA:0009258 A mesenchymal cell found in the developing heart. CL:0000569 TAO:0009259 cardiac mesenchymal cells zebrafish_anatomy ZFA:0009259 cardiac mesenchymal cell ZFA:0009259 A mesenchymal cell found in the developing heart. PMID:18816864 cardiac mesenchymal cells CL:0000570 TAO:0009260 C cell zebrafish_anatomy ZFA:0009260 parafollicular cell ZFA:0009260 A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light. These cells express purine nucleoside phosphorylase 4a. CL:0000571 TAO:0009261 zebrafish_anatomy guaninophores guanophore ZFA:0009261 leucophore ZFA:0009261 A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light. These cells express purine nucleoside phosphorylase 4a. CL:curator guanophore PMID:16588565 One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision. CL:0000573 TAO:0009262 retinal cone cells zebrafish_anatomy ZFA:0009262 retinal cone cell ZFA:0009262 One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision. CL:curator retinal cone cells A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance. CL:0000574 TAO:0009263 erythrophores zebrafish_anatomy ZFA:0009263 erythrophore ZFA:0009263 A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance. CL:curator erythrophores CL:0000575 TAO:0009264 corneal epithelial cells zebrafish_anatomy ZFA:0009264 corneal epithelial cell ZFA:0009264 corneal epithelial cells Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells. CL:0000576 TAO:0009265 monocytes zebrafish_anatomy ZFA:0009265 monocyte ZFA:0009265 Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells. CL:curator monocytes A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, differentiation of cytoplasmic granules has begun. CL:0000580 TAO:0009266 neutrophilic myelocytes zebrafish_anatomy ZFA:0009266 neutrophilic myelocyte ZFA:0009266 A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, differentiation of cytoplasmic granules has begun. ZFIN:ZDB-PUB-070221-1 neutrophilic myelocytes A macrophage resident in the peritoneum under non-inlfammatory conditions. CL:0000581 TAO:0009267 peritoneal macrophages zebrafish_anatomy ZFA:0009267 peritoneal macrophage ZFA:0009267 A macrophage resident in the peritoneum under non-inlfammatory conditions. CL:curator peritoneal macrophages A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented and its chromatin becomes coarse and clumped; and the cytoplasm becomes pink like that of a mature granulocyte. CL:0000582 TAO:0009268 juvenile neutrophil zebrafish_anatomy ZFA:0009268 neutrophilic metamyelocyte ZFA:0009268 A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented and its chromatin becomes coarse and clumped; and the cytoplasm becomes pink like that of a mature granulocyte. ZFIN:ZDB-PUB-070221-1 An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen. CL:0000584 TAO:0009269 enterocytes zebrafish_anatomy ZFA:0009269 enterocyte ZFA:0009269 An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen. SANBI:curator enterocytes A specialized osteoclast associated with the absorption and removal of cementum. CL:0000588 TAO:0009270 odontoclasts zebrafish_anatomy ZFA:0009270 odontoclast ZFA:0009270 A specialized osteoclast associated with the absorption and removal of cementum. CL:curator odontoclasts CL:0000593 TAO:0009271 androgen secreting cells zebrafish_anatomy ZFA:0009271 androgen secreting cell ZFA:0009271 androgen secreting cells An elongated, spindle-shaped, quiescent myoblast lying in close contact with adult skeletal muscle. They are thought to play a role in muscle repair and regeneration. CL:0000594 TAO:0009272 skeletal muscle satellite cells zebrafish_anatomy ZFA:0009272 skeletal muscle satellite cell ZFA:0009272 An elongated, spindle-shaped, quiescent myoblast lying in close contact with adult skeletal muscle. They are thought to play a role in muscle repair and regeneration. CL:curator skeletal muscle satellite cells A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region. CL:0000598 TAO:0009273 pyramidal cells zebrafish_anatomy ZFA:0009273 pyramidal cell ZFA:0009273 A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region. CL:curator pyramidal cells A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls. CL:0000602 TAO:0009274 pressoreceptor cells zebrafish_anatomy ZFA:0009274 pressoreceptor cell ZFA:0009274 A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls. CL:curator pressoreceptor cells One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision. CL:0000604 TAO:0009275 retinal rod cells zebrafish_anatomy ZFA:0009275 retinal rod cell ZFA:0009275 One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision. CL:curator retinal rod cells A neuron that uses GABA as a vesicular neurotransmitter. CL:0000617 TAO:0009276 GABAergic neurons zebrafish_anatomy ZFA:0009276 GABAergic neuron ZFA:0009276 A neuron that uses GABA as a vesicular neurotransmitter. GOC:tfm GABAergic neurons A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus). CL:0000622 TAO:0009277 acinar cells zebrafish_anatomy ZFA:0009277 acinar cell ZFA:0009277 A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus). GOC:tfm acinar cells A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. CL:0000623 TAO:0009278 NK cell zebrafish_anatomy large granular lymphocyte null cell ZFA:0009278 natural killer cell ZFA:0009278 A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. ZFIN:ZDB-PUB-070221-3 A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype. CL:0000632 TAO:0009279 hepatic stellate cell perisinusoidal cell zebrafish_anatomy ZFA:0009279 ito cell ZFA:0009279 A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype. GOC:tm Glial cell of the retina that forms a support structure stretching radially across the thickness of the retina. Muller cell bodies are found in the inner nuclear layer and send projection to the outer limiting membrane and inner limiting membrane. CL:0000636 TAO:0009280 Mueller cell Muller cells zebrafish_anatomy ZFA:0009280 Muller cell ZFA:0009280 Glial cell of the retina that forms a support structure stretching radially across the thickness of the retina. Muller cell bodies are found in the inner nuclear layer and send projection to the outer limiting membrane and inner limiting membrane. GOC:cvs GOC:ymb ORCiD:0000-0002-2244-7917 ORCiD:0000-0002-9900-7880 http://webvision.med.utah.edu/book/part-ii-anatomy-and-physiology-of-the-retina/glial-cells-of-the-retina/ Mueller cell ZFIN:ZDB-PUB-150220-2 Muller cells A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones. CL:0000642 TAO:0009281 folliculostellate cells zebrafish_anatomy ZFA:0009281 folliculostellate cell ZFA:0009281 A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones. CL:curator folliculostellate cells CL:0000644 TAO:0009282 Bergmann glial cells zebrafish_anatomy ZFA:0009282 Bergmann glial cell ZFA:0009282 Bergmann glial cells CL:0000650 TAO:0009283 mesangial cells zebrafish_anatomy ZFA:0009283 mesangial cell ZFA:0009283 mesangial cells CL:0000652 TAO:0009284 pinealocytes zebrafish_anatomy ZFA:0009284 pinealocyte ZFA:0009284 pinealocytes CL:0000653 TAO:0009285 podocytes zebrafish_anatomy ZFA:0009285 podocyte ZFA:0009285 podocytes CL:0000666 TAO:0009286 window cell zebrafish_anatomy ZFA:0009286 fenestrated cell ZFA:0009286 CL:0000667 TAO:0009287 collagen secreting cells zebrafish_anatomy ZFA:0009287 collagen secreting cell ZFA:0009287 collagen secreting cells A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. ZFA:0000065 CL:0000670 TAO:0009288 PGC zebrafish_anatomy ZFA:0009288 primordial germ cell ZFA:0009288 A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. CL:curator Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules. CL:0000677 TAO:0009289 gut absorptive cells zebrafish_anatomy ZFA:0009289 gut absorptive cell ZFA:0009289 Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules. CL:curator gut absorptive cells CL:0000679 TAO:0009290 glutamatergic neurons zebrafish_anatomy ZFA:0009290 glutamatergic neuron ZFA:0009290 glutamatergic neurons CL:0000680 TAO:0009291 muscle precursor cells zebrafish_anatomy ZFA:0009291 muscle precursor cell ZFA:0009291 muscle precursor cells A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration. CL:0000681 TAO:0009292 radial glial cells zebrafish_anatomy ZFA:0009292 radial glial cell ZFA:0009292 A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration. CL:curator radial glial cells An absorptive cell of the mammalian gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes. CL:0000682 TAO:0009293 M cells zebrafish_anatomy ZFA:0009293 M cell ZFA:0009293 An absorptive cell of the mammalian gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes. CL:curator M cells A cell that transports hormones from neurosecretory cells. CL:0000683 TAO:0009294 ependymoglial cells zebrafish_anatomy ZFA:0009294 ependymoglial cell ZFA:0009294 A cell that transports hormones from neurosecretory cells. CL:curator ependymoglial cells CL:0000686 TAO:0009295 cerebrospinal fluid secreting cells zebrafish_anatomy ZFA:0009295 cerebrospinal fluid secreting cell ZFA:0009295 cerebrospinal fluid secreting cells A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina. CL:0000688 TAO:0009296 perijunctional fibroblasts zebrafish_anatomy ZFA:0009296 perijunctional fibroblast ZFA:0009296 A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina. CL:curator perijunctional fibroblasts CL:0000691 TAO:0009297 stellate interneurons zebrafish_anatomy ZFA:0009297 stellate interneuron ZFA:0009297 stellate interneurons A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse. CL:0000692 TAO:0009298 terminal Schwann cells zebrafish_anatomy ZFA:0009298 terminal Schwann cell ZFA:0009298 A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse. CL:curator terminal Schwann cells A stellate interneuron having 7-10 dendrites that may branch. CL:0000693 TAO:0009299 spiderweb cell zebrafish_anatomy ZFA:0009299 neuroglioform cell ZFA:0009299 A stellate interneuron having 7-10 dendrites that may branch. CL:curator One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene. CL:0000695 TAO:0009300 Cajal-Retzius cells zebrafish_anatomy ZFA:0009300 Cajal-Retzius cell ZFA:0009300 One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene. CL:curator Cajal-Retzius cells A neuron that releases dopamine as a neurotransmitter. CL:0000700 TAO:0009301 dopaminergic neurons zebrafish_anatomy ZFA:0009301 dopaminergic neuron ZFA:0009301 A neuron that releases dopamine as a neurotransmitter. CL:dhill dopaminergic neurons Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors. CL:0000703 TAO:0009302 sustentacular cells zebrafish_anatomy ZFA:0009302 sustentacular cell ZFA:0009302 Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors. CL:curator sustentacular cells A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels. CL:0000704 TAO:0009303 endothelial tip cells zebrafish_anatomy ZFA:0009303 endothelial tip cell ZFA:0009303 A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels. CL:curator endothelial tip cells Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord. CL:0000706 TAO:0009304 choroid plexus epithelial cells zebrafish_anatomy ZFA:0009304 choroid plexus epithelial cell ZFA:0009304 Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord. CL:curator choroid plexus epithelial cells Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus. CL:0000708 TAO:0009305 leptomeningeal cells zebrafish_anatomy leptomemingeal cell ZFA:0009305 leptomeningeal cell ZFA:0009305 Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus. CL:curator leptomeningeal cells CL:0000710 TAO:0009306 neuroepithelial cells zebrafish_anatomy ZFA:0009306 neuroepithelial cell ZFA:0009306 neuroepithelial cells A stem cell that can give rise to cell types of the body other than those of the germ-line. CL:0000723 TAO:0009307 somatic stem cells zebrafish_anatomy ZFA:0009307 Definition originally referred to GO:0048103. Changed to GOC: CJM to match other references. somatic stem cell ZFA:0009307 A stem cell that can give rise to cell types of the body other than those of the germ-line. GO:cjm somatic stem cells A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria. CL:0000731 TAO:0009308 urothelial cells zebrafish_anatomy ZFA:0009308 urothelial cell ZFA:0009308 A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria. CL:curator urothelial cells An achromatic cell of the myeloid or lymphoid lineages, found in blood or other tissue. CL:0000738 TAO:0009309 immune cell leucocyte white blood cell zebrafish_anatomy ZFA:0009309 leukocyte ZFA:0009309 An achromatic cell of the myeloid or lymphoid lineages, found in blood or other tissue. CL:curator The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve. CL:0000740 TAO:0009310 RGC gangliocyte zebrafish_anatomy ZFA:0009310 retinal ganglion cell ZFA:0009310 The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve. CL:curator A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord. CL:0000741 TAO:0009311 SACMN zebrafish_anatomy ZFA:0009311 spinal accessory motor neuron ZFA:0009311 A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord. CL:curator A round chondrocyte that first differentiates in the late embryonic growth plate of bone. CL:0000742 TAO:0009312 periarticular chondrocytes zebrafish_anatomy ZFA:0009312 periarticular chondrocyte ZFA:0009312 A round chondrocyte that first differentiates in the late embryonic growth plate of bone. CL:curator periarticular chondrocytes A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone. CL:0000743 TAO:0009313 hypertrophic chondrocytes zebrafish_anatomy ZFA:0009313 hypertrophic chondrocyte ZFA:0009313 A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone. CL:curator hypertrophic chondrocytes A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate. CL:0000744 TAO:0009314 columnar chondrocytes zebrafish_anatomy ZFA:0009314 columnar chondrocyte ZFA:0009314 A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate. CL:curator columnar chondrocytes A neuron that laterally connects other neurons in the inner nuclear layer of the retina. CL:0000745 TAO:0009315 horizontal cells zebrafish_anatomy ZFA:0009315 horizontal cell ZFA:0009315 A neuron that laterally connects other neurons in the inner nuclear layer of the retina. ZFIN:ZDB-PUB-070221-6 horizontal cells CL:0000746 TAO:0009316 cardiac muscle cells cardiac myocyte cardiomyocyte zebrafish_anatomy ZFA:0009316 cardiac muscle cell ZFA:0009316 cardiac muscle cells A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance. CL:0000747 TAO:0009317 blue chromatophore zebrafish_anatomy ZFA:0009317 cyanophore ZFA:0009317 A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance. CL:curator A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. CL:0000748 TAO:0009318 zebrafish_anatomy ZFA:0009318 retinal bipolar neuron ZFA:0009318 A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. CL:curator A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors. CL:0000749 TAO:0009319 ON-bipolar cells zebrafish_anatomy ZFA:0009319 ON-bipolar cell ZFA:0009319 A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors. CL:curator ON-bipolar cells A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors. CL:0000750 TAO:0009320 OFF-bipolar cells zebrafish_anatomy ZFA:0009320 OFF-bipolar cell ZFA:0009320 A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors. CL:curator OFF-bipolar cells A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer. CL:0000751 TAO:0009321 rod bipolar cells zebrafish_anatomy ZFA:0009321 rod bipolar cell ZFA:0009321 A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer. CL:curator rod bipolar cells A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer. CL:0000752 TAO:0009322 cone retinal bipolar cells zebrafish_anatomy ZFA:0009322 cone retinal bipolar cell ZFA:0009322 A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer. CL:curator cone retinal bipolar cells A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates. CL:0000762 TAO:0009323 thrombocytes zebrafish_anatomy ZFA:0009323 Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals. thrombocyte ZFA:0009323 A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates. CL:curator thrombocytes A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage. CL:0000763 TAO:0009324 myeloid cells zebrafish_anatomy ZFA:0009324 myeloid cell ZFA:0009324 A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage. CL:curator myeloid cells A immature or mature cell in the lineage leading to and including erythrocytes. CL:0000764 TAO:0009325 erythroid lineage cells zebrafish_anatomy ZFA:0009325 erythroid lineage cell ZFA:0009325 A immature or mature cell in the lineage leading to and including erythrocytes. CL:curator erythroid lineage cells A cell of the monocyte, granulocyte, or mast cell lineage. CL:0000766 TAO:0009326 myeloid leukocytes zebrafish_anatomy ZFA:0009326 myeloid leukocyte ZFA:0009326 A cell of the monocyte, granulocyte, or mast cell lineage. CL:curator myeloid leukocytes Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. CL:0000775 TAO:0009327 neutrocyte neutrophil leucocyte neutrophil leukocyte neutrophilic leucocyte neutrophilic leukocyte zebrafish_anatomy PMN polymorphonuclear leucocyte polymorphonuclear leukocyte polymorphonuclear neutrophil polynuclear neutrophilic leucocyte polynuclear neutrophilic leukocyte ZFA:0009327 neutrophil ZFA:0009327 Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. ZFIN:ZDB-PUB-070221-1 Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. A neutrophil is a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. CL:0000776 TAO:0009328 immature neutrocyte immature neutrophil leucocyte immature neutrophil leukocyte immature neutrophilic leucocyte zebrafish_anatomy ZFA:0009328 immature neutrophil ZFA:0009328 Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. A neutrophil is a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. ZFIN:ZDB-PUB-070221-1 A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts. CL:0000778 TAO:0009329 mononuclear osteoclasts zebrafish_anatomy ZFA:0009329 mononuclear osteoclast ZFA:0009329 A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts. CL:curator mononuclear osteoclasts A specialized mononuclear osteoclast associated with the absorption and removal of cementum. CL:0000781 TAO:0009330 mononuclear odontoclasts zebrafish_anatomy ZFA:0009330 mononuclear odontoclast ZFA:0009330 A specialized mononuclear osteoclast associated with the absorption and removal of cementum. CL:curator mononuclear odontoclasts A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen. CL:0000785 TAO:0009331 mature B lymphocyte mature B-cell mature B-lymphocyte zebrafish_anatomy ZFA:0009331 mature B cell ZFA:0009331 A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen. ZFIN:ZDB-PUB-070221-3 A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin. CL:0000786 TAO:0009332 plasmacyte zebrafish_anatomy ZFA:0009332 plasma cell ZFA:0009332 A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin. ZFIN:ZDB-PUB-070221-1 ZFIN:ZDB-PUB-070221-3 A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative. CL:0000787 TAO:0009333 memory B lymphocyte memory B-cell memory B-lymphocyte zebrafish_anatomy ZFA:0009333 memory B cell ZFA:0009333 A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative. ZFIN:ZDB-PUB-070221-3 A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD27-negative, and CD38-negative, and that has not yet been activated by antigen in the periphery. CL:0000788 TAO:0009334 naive B lymphocyte naive B-cell naive B-lymphocyte zebrafish_anatomy ZFA:0009334 naive B cell ZFA:0009334 A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD27-negative, and CD38-negative, and that has not yet been activated by antigen in the periphery. CL:curator IBSN:0781765196 A T cell that expresses an alpha-beta T cell receptor complex. CL:0000789 TAO:0009335 alpha-beta T lymphocyte alpha-beta T-cell alpha-beta T-lymphocyte zebrafish_anatomy ZFA:0009335 alpha-beta T cell ZFA:0009335 A T cell that expresses an alpha-beta T cell receptor complex. ZFIN:ZDB-PUB-070221-3 A T cell that expresses a gamma-delta T cell receptor complex. CL:0000798 TAO:0009336 gamma-delta T lymphocyte gamma-delta T-cell gamma-delta T-lymphocyte zebrafish_anatomy ZFA:0009336 Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. gamma-delta T cell ZFA:0009336 A T cell that expresses a gamma-delta T cell receptor complex. ZFIN:ZDB-PUB-070221-3 A gamma-delta T cell that has an immature phenotype. CL:0000799 TAO:0009337 immature gamma-delta T lymphocyte immature gamma-delta T-cell immature gamma-delta T-lymphocyte zebrafish_anatomy ZFA:0009337 Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. immature gamma-delta T cell ZFA:0009337 A gamma-delta T cell that has an immature phenotype. ZFIN:ZDB-PUB-070221-3 A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location. CL:0000800 TAO:0009338 mature gamma-delta T lymphocyte mature gamma-delta T-cell mature gamma-delta T-lymphocyte zebrafish_anatomy ZFA:0009338 mature gamma-delta T cell ZFA:0009338 A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location. ZFIN:ZDB-PUB-070221-3 A gamma-delta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements. CL:0000801 TAO:0009339 gamma-delta intraepithelial T lymphocyte gamma-delta intraepithelial T-cell gamma-delta intraepithelial T-lymphocyte zebrafish_anatomy IEL intraepithelial lymphocyte ZFA:0009339 gamma-delta intraepithelial T cell ZFA:0009339 A gamma-delta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements. ZFIN:ZDB-PUB-070221-3 true ZFA:0009340 true ZFA:0009341 A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive. CL:0000813 TAO:0009342 memory T lymphocyte memory T-cell memory T-lymphocyte zebrafish_anatomy ZFA:0009342 memory T cell ZFA:0009342 A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive. ZFIN:ZDB-PUB-070221-3 An immature B cell is a precursor B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation. CL:0000816 TAO:0009343 immature B lymphocyte immature B-cell immature B-lymphocyte newly formed B Cell zebrafish_anatomy ZFA:0009343 immature B cell ZFA:0009343 An immature B cell is a precursor B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation. ZFIN:ZDB-PUB-070221-3 newly formed B Cell ZFIN:ZDB-PUB-070221-3 A precursor B cell is a B cell with the phenotype CD10-positive. CL:0000817 TAO:0009344 pre-B lymphocyte zebrafish_anatomy ZFA:0009344 precursor B cell ZFA:0009344 A precursor B cell is a B cell with the phenotype CD10-positive. ZFIN:ZDB-PUB-070221-3 An immature B cell of an intermediate stage between the pre-B cell stage and the mature nave stage. Transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection. CL:0000818 TAO:0009345 transitional stage B lymphocyte transitional stage B-cell transitional stage B-lymphocyte zebrafish_anatomy T1 B cell T2 B cell T3 B cell ZFA:0009345 transitional stage B cell ZFA:0009345 An immature B cell of an intermediate stage between the pre-B cell stage and the mature nave stage. Transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection. ZFIN:ZDB-PUB-070221-3 A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD117-positive, CD122-positive, and CD161-positive, and expresses additional natural killer cell receptors (NKR). CL:0000823 TAO:0009346 immature NK cell zebrafish_anatomy p-NK ZFA:0009346 immature natural killer cell ZFA:0009346 A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD117-positive, CD122-positive, and CD161-positive, and expresses additional natural killer cell receptors (NKR). ZFIN:ZDB-PUB-070221-3 A natural killer cell that is developmentally mature, has the phenotype CD16-positive, and expresses a variety of inhibitory and activating receptors that recognize NHC class I and other stress related molecules. CL:0000824 TAO:0009347 mature NK cell zebrafish_anatomy LAK cell lymphokine activated killer cell ZFA:0009347 mature natural killer cell ZFA:0009347 A natural killer cell that is developmentally mature, has the phenotype CD16-positive, and expresses a variety of inhibitory and activating receptors that recognize NHC class I and other stress related molecules. ZFIN:ZDB-PUB-070221-3 A progenitor committed to the natural killer cell lineage, expressing certain phenotypic markers of the natural killer cell lineage such as the IL-15 receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules. CL:0000825 TAO:0009348 NKP natural killer cell progenitor pro-natural killer cell zebrafish_anatomy null cell preNK cell ZFA:0009348 pro-NK cell ZFA:0009348 A progenitor committed to the natural killer cell lineage, expressing certain phenotypic markers of the natural killer cell lineage such as the IL-15 receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules. CL:curator A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs. CL:0000826 TAO:0009349 pro-B lymphocyte pro-B-cell pro-B-lymphocyte progenitor B cell zebrafish_anatomy ZFA:0009349 pro-B cell ZFA:0009349 A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs. ZFIN:ZDB-PUB-070221-3 A progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage. CL:0000827 TAO:0009350 pro-T lymphocyte zebrafish_anatomy DN1 cell DN1 thymocyte TN1 cell ZFA:0009350 pro-T cell ZFA:0009350 A progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage. ZFIN:ZDB-PUB-070221-3 A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates. CL:0000828 TAO:0009351 thromboblasts zebrafish_anatomy ZFA:0009351 Note that this is a non-mammalian cell type. thromboblast ZFA:0009351 A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates. CL:curator thromboblasts A progenitor cell of the neutrophil lineage. CL:0000834 TAO:0009352 zebrafish_anatomy neutrophil stem cell ZFA:0009352 neutrophil progenitor cell ZFA:0009352 A progenitor cell of the neutrophil lineage. ZFIN:ZDB-PUB-070221-1 The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm. CL:0000835 TAO:0009353 myeloblasts zebrafish_anatomy ZFA:0009353 myeloblast ZFA:0009353 The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm. ZFIN:ZDB-PUB-070221-1 myeloblasts A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans. CL:0000837 TAO:0009354 hematopoietic progenitor cell hemopoietic progenitor cell zebrafish_anatomy ZFA:0009354 Note that this is a class of cell types, not an identified single cell type. hematopoietic multipotent progenitor cell ZFA:0009354 A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans. CL:curator PMID:19022770 A progenitor cell restricted to the lymphoid lineage. CL:0000838 TAO:0009355 lymphoid progenitor cells zebrafish_anatomy ZFA:0009355 Note that this is a class of cell types, not an identified single cell type. lymphoid progenitor cell ZFA:0009355 A progenitor cell restricted to the lymphoid lineage. CL:curator PMID:19022770 lymphoid progenitor cells A progenitor cell restricted to the myeloid lineage. CL:0000839 TAO:0009356 myeloid progenitor cells zebrafish_anatomy myeloid progenitor cell ZFA:0009356 Note that this is a class of cell types, not an identified single cell type. myeloid lineage restricted progenitor cell ZFA:0009356 A progenitor cell restricted to the myeloid lineage. CL:curator PMID:19022770 myeloid progenitor cells A leukocyte with a single non-segmented nucleus in the mature form. CL:0000842 TAO:0009357 mononuclear cells zebrafish_anatomy ZFA:0009357 mononuclear cell ZFA:0009357 A leukocyte with a single non-segmented nucleus in the mature form. CL:curator mononuclear cells An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob. The soma is located basally in the olfactory epithelium. CL:0000847 TAO:0009358 ciliated olfactory sensory neuron ciliated sensory neuron zebrafish_anatomy ZFA:0009358 ciliated olfactory receptor neuron ZFA:0009358 An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob. The soma is located basally in the olfactory epithelium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060724-7 ZFIN:ZDB-PUB-140416-5 An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli. The cell body is plump and the soma is at an intermediate position in the olfactory epithelium. CL:0000848 TAO:0009359 microvillous olfactory sensory neuron zebrafish_anatomy microvillous sensory neuron ZFA:0009359 microvillous olfactory receptor neuron ZFA:0009359 An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli. The cell body is plump and the soma is at an intermediate position in the olfactory epithelium. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060724-7 ZFIN:ZDB-PUB-140416-5 An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli. The soma is large and globose located in the apical region of the olfactory epithelium. The axons project to a single glomerulus mdG2. CL:0000849 TAO:0009360 crypt cell crypt olfactory sensory neuron crypt sensory neuron zebrafish_anatomy ZFA:0009360 crypt olfactory receptor neuron ZFA:0009360 An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli. The soma is large and globose located in the apical region of the olfactory epithelium. The axons project to a single glomerulus mdG2. GOC:cvs ORCiD:0000-0002-2244-7917 ZFIN:ZDB-PUB-060724-7 ZFIN:ZDB-PUB-130710-55 ZFIN:ZDB-PUB-140416-5 A neuron that releases serotonin as a neurotransmitter. ZFA:0009192 CL:0000850 TAO:0009192 TAO:0009361 5-HT neuron 5-hydroxytryptamine neuron zebrafish_anatomy serotinergic neuron serotinergic neurons ZFA:0009361 Has alternate ID CL:0000403. serotonergic neuron ZFA:0009361 A neuron that releases serotonin as a neurotransmitter. CL:curator Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded. CL:0000851 TAO:0009362 neuromast mantle cells zebrafish_anatomy ZFA:0009362 neuromast mantle cell ZFA:0009362 Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded. ZFIN:ZDB-PUB-070221-7 neuromast mantle cells Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells. CL:0000852 TAO:0009363 neuromast support cells zebrafish_anatomy ZFA:0009363 neuromast support cell ZFA:0009363 Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells. ZFIN:ZDB-PUB-070221-7 neuromast support cells Olfactory epithelial support cell is a non ciliated columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. CL:0000853 TAO:0009364 olfactory sustentacular cell zebrafish_anatomy ZFA:0009364 olfactory epithelial support cell ZFA:0009364 Olfactory epithelial support cell is a non ciliated columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. CL:curator Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts. CL:0000854 TAO:0009365 interneuromast cells zebrafish_anatomy ZFA:0009365 interneuromast cell ZFA:0009365 Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts. CL:curator interneuromast cells Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. CL:0000855 TAO:0009366 hair cells zebrafish_anatomy ZFA:0009366 hair cell ZFA:0009366 Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system. CL:curator hair cells Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. CL:0000856 TAO:0009367 neuromast hair cells zebrafish_anatomy ZFA:0009367 neuromast hair cell ZFA:0009367 Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. CL:curator neuromast hair cells A skeletal muscle myoblast that differentiates into slow muscle fibers. CL:0000857 TAO:0009368 slow muscle myoblasts zebrafish_anatomy ZFA:0009368 slow muscle myoblast ZFA:0009368 A skeletal muscle myoblast that differentiates into slow muscle fibers. CL:curator slow muscle myoblasts A skeletal muscle myoblast that differentiates into fast muscle fibers. CL:0000858 TAO:0009369 fast muscle myoblasts zebrafish_anatomy ZFA:0009369 fast muscle myoblast ZFA:0009369 A skeletal muscle myoblast that differentiates into fast muscle fibers. CL:curator fast muscle myoblasts CL:1000082 TAO:0009370 stretch receptor cells zebrafish_anatomy ZFA:0009370 stretch receptor cell ZFA:0009370 stretch receptor cells CL:1000083 TAO:0009371 stratified keratinized epithelial stem cells zebrafish_anatomy ZFA:0009371 stratified keratinized epithelial stem cell ZFA:0009371 stratified keratinized epithelial stem cells Epithelial cell part of duct. Ceri 2013-07-29T05:17:20Z CL:0000068 zebrafish_anatomy ZFA:0009372 Definition not present in CL. duct epithelial cell ZFA:0009372 Epithelial cell part of duct. GOC:cvs ORCiD:0000-0002-2244-7917 true ZFA:0009373 An epithelial cell of the kidney. CL:0002518 zebrafish_anatomy ZFA:0009374 kidney epithelial cell ZFA:0009374 An epithelial cell of the kidney. GOC:tfm KUPO:SJ A cuboidal epithelial cell of the kidney that regulates acid/base balance. Ceri 2013-03-06T01:42:07Z CL:0005010 intercalated cell zebrafish_anatomy ZFA:0009375 renal intercalated cell ZFA:0009375 A cuboidal epithelial cell of the kidney that regulates acid/base balance. CL:CVS A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance. Ceri 2013-03-06T01:42:03Z CL:0005011 zebrafish_anatomy ZFA:0009376 renal alpha-intercalated cell ZFA:0009376 A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance. CL:CVS true ZFA:0009377 true ZFA:0009378 An epithelial cell of the intrahepatic portion of the bile duct. Ceri 2013-07-29T05:21:19Z CL:0002538 zebrafish_anatomy ZFA:0009379 intrahepatic bile duct epithelial cell ZFA:0009379 An epithelial cell of the intrahepatic portion of the bile duct. GOC:tfm Epithelial cell found in the ducts of the pancreas. Ceri 2013-07-29T05:23:07Z CL:0002079 zebrafish_anatomy ZFA:0009380 pancreatic ductal cell ZFA:0009380 Epithelial cell found in the ducts of the pancreas. GOC:tfm true ZFA:0009381 true ZFA:0009382 An epithelial cell derived from endoderm. Ceri 2013-08-02T04:25:16Z CL:0002076 zebrafish_anatomy ZFA:0009383 endo-epithelial cell ZFA:0009383 An epithelial cell derived from endoderm. GOC:tfm Epithelial cells derived from neural plate and neural crest. neuroepithelial cell CL:0000710 zebrafish_anatomy ZFA:0009384 The term "neuroepithelial cell" is used to describe both this cell type and sensory epithelial cell (CL:0000098). neurecto-epithelial cell ZFA:0009384 Epithelial cells derived from neural plate and neural crest. GOC:tfm An epithelial cell derived from ectoderm. CL:0002077 zebrafish_anatomy ZFA:0009385 ecto-epithelial cell ZFA:0009385 An epithelial cell derived from ectoderm. FMA:69074 A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). CL:0002371 zebrafish_anatomy ZFA:0009386 somatic cell ZFA:0009386 A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). GOC:tfm ISBN:0721662544 A cell whose primary function is to support other cell types. CL:0000630 zebrafish_anatomy ZFA:0009387 supportive cell ZFA:0009387 A cell whose primary function is to support other cell types. FB:ma GOC:tfm Epithelial cell derived from mesoderm or mesenchyme. CL:0002078 epithelial mesenchymal cell zebrafish_anatomy ZFA:0009388 meso-epithelial cell ZFA:0009388 Epithelial cell derived from mesoderm or mesenchyme. FMA:69076 GOC:tfm Cell that is part of the kidney. CL:1000497 zebrafish_anatomy ZFA:0009389 kidney cell ZFA:0009389 Cell that is part of the kidney. GOC:cvs ORCiD:0000-0002-2244-7917 CL:1000500 zebrafish_anatomy ZFA:0009390 kidney interstitial cell ZFA:0009390 CL:1000504 zebrafish_anatomy ZFA:0009391 kidney medulla cell ZFA:0009391 A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. CL:0002320 zebrafish_anatomy ZFA:0009392 connective tissue cell ZFA:0009392 A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. GOC:tfm ISBN:0618947256 Lymphatic progenitor cells. Ceri 2012-01-12T04:44:34Z CL:0005020 zebrafish_anatomy ZFA:0009393 Usually express Prox1, or prox1b. lymphangioblast ZFA:0009393 Lymphatic progenitor cells. CL:CVS Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics. Ceri 2012-01-12T05:01:22Z CL:0005021 zebrafish_anatomy ZFA:0009394 mesenchymal lymphangioblast ZFA:0009394 Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics. PMID:15624319 PMID:18430230 Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells. Ceri 2012-01-12T05:21:09Z CL:0005022 parachordal lymphangioblast zebrafish_anatomy ZFA:0009395 vascular lymphangioblast ZFA:0009395 Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells. CL:CVS The neurons that utilize glycine as a neurotransmitter. CL:1001509 zebrafish_anatomy ZFA:0009396 glycinergic neuron ZFA:0009396 The neurons that utilize glycine as a neurotransmitter. MP:0010385 An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts. Ceri 2013-08-02T12:08:01Z CL:1000488 epithelial cell of bile duct zebrafish_anatomy bile duct cells ZFA:0009397 cholangiocyte ZFA:0009397 An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts. PMID:16550043 PMID:18356246 Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants. Ceri 2013-08-02T12:13:12Z zebrafish_anatomy ZFA:0009398 hepatoblast ZFA:0009398 Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants. GOC:cvs ORCiD:0000-0002-2244-7917 PMID:18356246 PMID:20483998 An epithelial cell of the intestine. Ceri 2013-08-02T04:26:27Z CL:0002563 zebrafish_anatomy ZFA:0009399 intestinal epithelial cell ZFA:0009399 An epithelial cell of the intestine. GOC:tfm An epithelial cell of the esophagus. Ceri 2013-08-02T04:32:14Z CL:0002252 zebrafish_anatomy ZFA:0009400 epithelial cell of esophagus ZFA:0009400 An epithelial cell of the esophagus. GOC:tfm A vertebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. Ceri 2017-09-01T15:46:37Z CL:0011004 zebrafish_anatomy ZFA:0009401 lens fiber cell ZFA:0009401 A vertebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye. GOC:nv Cell that is part of the heart valve. ceriv 2020-12-08T09:32:56Z CL:1000147 zebrafish_anatomy ZFA:0009402 heart valve cell ZFA:0009402 Cell that is part of the heart valve. CL:editor Cells that secrete the extracellular matrix of the heart valve. ceriv 2020-12-08T09:43:48Z zebrafish_anatomy VIC ZFA:0009403 heart valve interstitial cell ZFA:0009403 Cells that secrete the extracellular matrix of the heart valve. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-191202-2 VIC ZFIN:ZDB-PUB-191202-2 Endothelial cells that surround the heart valve extracellular matrix. ceriv 2020-12-08T09:48:24Z heart valve endocardial cell zebrafish_anatomy VEC ZFA:0009404 heart valve endothelial cell ZFA:0009404 Endothelial cells that surround the heart valve extracellular matrix. GOC:cvs ORCID:0000-0002-2244-7917 ZFIN:ZDB-PUB-191202-2 heart valve endocardial cell ZFIN:ZDB-PUB-200221-32 VEC ZFIN:ZDB-PUB-191202-2 zebrafish_anatomy ZFA:0100000 zebrafish anatomical entity ZFA:0100000 ZFIN:ZDB-STAGE-050211-1 ZFIN:ZDB-TERM-100331-2430 zebrafish_stages ZFS:0000000 unknown ZFS:0000000 ZFIN:ZDB-STAGE-010723-4 ZFIN:ZDB-TERM-100331-2431 zebrafish_stages ZFS:0000001 zygote:1-cell ZFS:0000001 ZFIN:ZDB-STAGE-010723-15 ZFIN:ZDB-TERM-100331-2432 zebrafish_stages ZFS:0000002 cleavage:2-cell ZFS:0000002 ZFIN:ZDB-STAGE-010723-11 ZFIN:ZDB-TERM-100331-2433 zebrafish_stages ZFS:0000003 cleavage:4-cell ZFS:0000003 ZFIN:ZDB-STAGE-010723-33 ZFIN:ZDB-TERM-100331-2434 zebrafish_stages ZFS:0000004 cleavage:8-cell ZFS:0000004 ZFIN:ZDB-STAGE-010723-20 ZFIN:ZDB-TERM-100331-2435 zebrafish_stages ZFS:0000005 cleavage:16-cell ZFS:0000005 ZFIN:ZDB-STAGE-010723-25 ZFIN:ZDB-TERM-100331-2436 zebrafish_stages ZFS:0000006 cleavage:32-cell ZFS:0000006 ZFIN:ZDB-STAGE-010723-28 ZFIN:ZDB-TERM-100331-2437 zebrafish_stages ZFS:0000007 cleavage:64-cell ZFS:0000007 ZFIN:ZDB-STAGE-010723-7 ZFIN:ZDB-TERM-100331-2438 zebrafish_stages ZFS:0000008 blastula:128-cell ZFS:0000008 ZFIN:ZDB-STAGE-010723-1 ZFIN:ZDB-TERM-100331-2439 zebrafish_stages ZFS:0000009 blastula:256-cell ZFS:0000009 ZFIN:ZDB-STAGE-010723-14 ZFIN:ZDB-TERM-100331-2440 zebrafish_stages ZFS:0000010 blastula:512-cell ZFS:0000010 ZFIN:ZDB-STAGE-010723-22 ZFIN:ZDB-TERM-100331-2441 zebrafish_stages ZFS:0000011 blastula:1k-cell ZFS:0000011 ZFIN:ZDB-STAGE-010723-27 ZFIN:ZDB-TERM-100331-2442 zebrafish_stages ZFS:0000012 blastula:high ZFS:0000012 ZFIN:ZDB-STAGE-010723-24 ZFIN:ZDB-TERM-100331-2443 zebrafish_stages ZFS:0000013 blastula:oblong ZFS:0000013 ZFIN:ZDB-STAGE-010723-21 ZFIN:ZDB-TERM-100331-2444 zebrafish_stages ZFS:0000014 blastula:sphere ZFS:0000014 ZFIN:ZDB-STAGE-010723-19 ZFIN:ZDB-TERM-100331-2445 zebrafish_stages ZFS:0000015 blastula:dome ZFS:0000015 ZFIN:ZDB-STAGE-010723-17 ZFIN:ZDB-TERM-100331-2446 zebrafish_stages ZFS:0000016 blastula:30%-epiboly ZFS:0000016 ZFIN:ZDB-STAGE-010723-6 ZFIN:ZDB-TERM-100331-2447 zebrafish_stages ZFS:0000017 gastrula:50%-epiboly ZFS:0000017 ZFIN:ZDB-STAGE-010723-3 ZFIN:ZDB-TERM-100331-2448 zebrafish_stages ZFS:0000018 gastrula:germ-ring ZFS:0000018 ZFIN:ZDB-STAGE-010723-2 ZFIN:ZDB-TERM-100331-2449 zebrafish_stages ZFS:0000019 gastrula:shield ZFS:0000019 ZFIN:ZDB-STAGE-010723-18 ZFIN:ZDB-TERM-100331-2450 zebrafish_stages ZFS:0000020 gastrula:75%-epiboly ZFS:0000020 ZFIN:ZDB-STAGE-010723-29 ZFIN:ZDB-TERM-100331-2451 zebrafish_stages ZFS:0000021 gastrula:90%-epiboly ZFS:0000021 ZFIN:ZDB-STAGE-010723-12 ZFIN:ZDB-TERM-100331-2452 zebrafish_stages ZFS:0000022 gastrula:bud ZFS:0000022 ZFIN:ZDB-STAGE-010723-23 ZFIN:ZDB-TERM-100331-2453 zebrafish_stages ZFS:0000023 segmentation:1-4 somites ZFS:0000023 ZFIN:ZDB-STAGE-010723-5 ZFIN:ZDB-TERM-100331-2454 zebrafish_stages ZFS:0000024 segmentation:5-9 somites ZFS:0000024 ZFIN:ZDB-STAGE-020626-1 ZFIN:ZDB-TERM-100331-2455 zebrafish_stages ZFS:0000025 segmentation:10-13 somites ZFS:0000025 ZFIN:ZDB-STAGE-010723-30 ZFIN:ZDB-TERM-100331-2456 zebrafish_stages ZFS:0000026 segmentation:14-19 somites ZFS:0000026 ZFIN:ZDB-STAGE-010723-16 ZFIN:ZDB-TERM-100331-2457 zebrafish_stages ZFS:0000027 segmentation:20-25 somites ZFS:0000027 ZFIN:ZDB-STAGE-010723-34 ZFIN:ZDB-TERM-100331-2458 zebrafish_stages ZFS:0000028 segmentation:26+ somites ZFS:0000028 ZFIN:ZDB-STAGE-010723-10 ZFIN:ZDB-TERM-100331-2439 zebrafish_stages ZFS:0000029 pharyngula:prim-5 ZFS:0000029 ZFIN:ZDB-STAGE-010723-32 ZFIN:ZDB-TERM-100331-2460 zebrafish_stages ZFS:0000030 pharyngula:prim-15 ZFS:0000030 ZFIN:ZDB-STAGE-010723-13 ZFIN:ZDB-TERM-100331-2461 zebrafish_stages ZFS:0000031 pharyngula:prim-25 ZFS:0000031 ZFIN:ZDB-STAGE-010723-31 ZFIN:ZDB-TERM-100331-2462 zebrafish_stages ZFS:0000032 pharyngula:high-pec ZFS:0000032 ZFIN:ZDB-STAGE-010723-9 ZFIN:ZDB-TERM-100331-2463 zebrafish_stages ZFS:0000033 hatching:long-pec ZFS:0000033 ZFIN:ZDB-STAGE-010723-26 ZFIN:ZDB-TERM-100331-2464 zebrafish_stages ZFS:0000034 hatching:pec-fin ZFS:0000034 ZFIN:ZDB-STAGE-010723-8 ZFIN:ZDB-TERM-100331-2465 zebrafish_stages ZFS:0000035 larval:protruding-mouth ZFS:0000035 ZFIN:ZDB-STAGE-010723-35 ZFIN:ZDB-TERM-100331-2466 zebrafish_stages ZFS:0000036 larval:day 4 ZFS:0000036 ZFIN:ZDB-STAGE-010723-36 ZFIN:ZDB-TERM-100331-2467 zebrafish_stages ZFS:0000037 larval:day 5 ZFS:0000037 ZFIN:ZDB-STAGE-010723-37 ZFIN:ZDB-TERM-100331-2468 zebrafish_stages ZFS:0000038 larval:day 6 ZFS:0000038 ZFIN:ZDB-STAGE-010723-47 ZFIN:ZDB-TERM-100331-2469 zebrafish_stages ZFS:0000039 larval:days 7-13 ZFS:0000039 ZFIN:ZDB-STAGE-010723-48 ZFIN:ZDB-TERM-100331-2470 zebrafish_stages ZFS:0000040 larval:days 14-20 ZFS:0000040 ZFIN:ZDB-STAGE-010723-49 ZFIN:ZDB-TERM-100331-2471 zebrafish_stages ZFS:0000041 larval:days 21-29 ZFS:0000041 ZFIN:ZDB-STAGE-010723-51 ZFIN:ZDB-TERM-100331-2472 zebrafish_stages ZFS:0000042 juvenile:days 30-44 ZFS:0000042 ZFIN:ZDB-STAGE-010723-52 ZFIN:ZDB-TERM-100331-2473 zebrafish_stages ZFS:0000043 juvenile:days 45-89 ZFS:0000043 ZFIN:ZDB-STAGE-010723-39 ZFIN:ZDB-TERM-100331-2474 zebrafish_stages ZFS:0000044 adult ZFS:0000044 zebrafish_stages ZFS:0000045 blastula ZFS:0000045 zebrafish_stages ZFS:0000046 cleavage ZFS:0000046 zebrafish_stages ZFS:0000047 gastrula ZFS:0000047 zebrafish_stages ZFS:0000048 larva ZFS:0000048 zebrafish_stages ZFS:0000049 segmentation ZFS:0000049 zebrafish_stages ZFS:0000050 pharyngula ZFS:0000050 zebrafish_stages ZFS:0000051 juvenile ZFS:0000051 yvonne 2014-11-05T08:33:09Z zebrafish_stages ZFS:0007000 hatching ZFS:0007000 zebrafish_stages ZFS:0100000 zebrafish stage ZFS:0100000 2025-01-28 releases/2025-01-28 X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y). RO:0002087 zebrafish_anatomical_ontology immediately_preceded_by immediately_preceded_by immediately_preceded_by X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y). goc:cjm RO:0002131 zebrafish_anatomical_ontology overlaps overlaps overlaps X continuous_with Y if and only if X and Y share a fiat boundary. RO:0002150 continuous_with zebrafish_anatomical_ontology continuous_with continuous_with continuous with X continuous_with Y if and only if X and Y share a fiat boundary. goc:cjm x has developmental contribution from y iff x has some part z such that z develops from y. RO:0002254 has_developmental_contribution_from zebrafish_anatomical_ontology has_developmental_contribution_from has_developmental_contribution_from has developmental contribution from x has developmental contribution from y iff x has some part z such that z develops from y. goc:cjm c existence starts during s iff start_of(c) part_of s. RO:0002496 starts_during zebrafish_anatomical_ontology existence starts during start start start stage c existence starts during s iff start_of(c) part_of s. goc:cjm c existence ends during s iff end_of(c) part_of s. RO:0002497 ends_during zebrafish_anatomical_ontology existence ends during end end end stage c existence ends during s iff end_of(c) part_of s. goc:cjm ZFA description. Zebrafish Anatomy Ontology (ZFA) OBO-Edit 2.3.1 28:01:2025 12:26 zebrafish_anatomical_ontology 1.2 ybrad CARO part_of NCBITaxon:7955 CL part_of NCBITaxon:7955 TAO part_of NCBITaxon:7955 VSAO part_of NCBITaxon:7955 2025-01-28